Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067357.t1 | PNY16524.1 | 44.2 | 224 | 41 | 1 | 288 | 427 | 30 | 253 | 1.10E-36 | 164.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067357.t1 | A0A2K3PMN3 | 44.2 | 224 | 41 | 1 | 288 | 427 | 30 | 253 | 8.0e-37 | 164.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051789 | MS.gene067357 | 0.800596 | 1.34E-48 | -1.69E-46 |
| MS.gene056760 | MS.gene067357 | 0.803132 | 4.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067357.t1 | MTR_2g046410 | 92.784 | 97 | 7 | 0 | 272 | 368 | 8 | 104 | 1.07e-55 | 188 |
| MS.gene067357.t1 | MTR_7g070750 | 41.509 | 159 | 83 | 5 | 27 | 175 | 94 | 252 | 2.69e-17 | 81.6 |
| MS.gene067357.t1 | MTR_3g071850 | 37.857 | 140 | 64 | 4 | 41 | 168 | 595 | 723 | 7.39e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGATCCTCCACAATTTCT+TGG | 0.249202 | 2.3:-36161752 | MS.gene067357:CDS |
| TTCCTGTGCATATCAGTGTT+TGG | 0.280833 | 2.3:+36162512 | None:intergenic |
| GACAAAGGAGCTTCCTCTTC+TGG | 0.283147 | 2.3:-36167246 | MS.gene067357:CDS |
| AGGAGATGCAGTTTGGGAAT+TGG | 0.292320 | 2.3:-36162545 | MS.gene067357:CDS |
| TCCTGTGCATATCAGTGTTT+GGG | 0.305294 | 2.3:+36162513 | None:intergenic |
| ATTGAGTGTCTGGAGGAAAT+AGG | 0.307141 | 2.3:-36162565 | MS.gene067357:CDS |
| TGAGATTGCACTAGTGGAAT+TGG | 0.312102 | 2.3:+36168128 | None:intergenic |
| AATCATATAGAAGCCGAAAA+TGG | 0.319780 | 2.3:-36161941 | MS.gene067357:intron |
| AGGAAATAGGAGATGCAGTT+TGG | 0.335676 | 2.3:-36162552 | MS.gene067357:CDS |
| TCCTTCGAATAATCAAAGTA+TGG | 0.349678 | 2.3:-36166890 | MS.gene067357:CDS |
| GTTGGCCAATACGGTTTCTA+AGG | 0.352677 | 2.3:-36166995 | MS.gene067357:CDS |
| GAGGAGGACGATAAATCTTT+TGG | 0.353036 | 2.3:+36167147 | None:intergenic |
| ATCCATTCCAGTGTTAGATT+TGG | 0.353474 | 2.3:-36167064 | MS.gene067357:CDS |
| AACCAGAGAAAGCTGACTTA+TGG | 0.375519 | 2.3:-36161721 | MS.gene067357:CDS |
| GAAGGTCTCCAGCAGCTTCC+GGG | 0.376115 | 2.3:-36167270 | MS.gene067357:CDS |
| TGCAGTTTGGGAATTGGATA+TGG | 0.377236 | 2.3:-36162539 | MS.gene067357:CDS |
| AGAAGGTCTCCAGCAGCTTC+CGG | 0.378305 | 2.3:-36167271 | MS.gene067357:CDS |
| GAAAGAAATGCTGAAAATAA+AGG | 0.381079 | 2.3:-36161794 | MS.gene067357:CDS |
| GCTTCTGTTGAGCACTTGAT+AGG | 0.392590 | 2.3:-36166739 | MS.gene067357:CDS |
| ATCCATAAGTCAGCTTTCTC+TGG | 0.396402 | 2.3:+36161719 | None:intergenic |
| TACAATTTGCAGATAATGTC+GGG | 0.399963 | 2.3:-36162619 | MS.gene067357:intron |
| AGGCAGATCCGTTGCACCTC+AGG | 0.401135 | 2.3:-36166719 | MS.gene067357:CDS |
| TATGTTACCTTTACTTCGTC+AGG | 0.404680 | 2.3:+36161659 | None:intergenic |
| TTCGAAGGAAGTACTTGAAC+TGG | 0.406221 | 2.3:+36166904 | None:intergenic |
| CTTTGTCACCCGGAAGCTGC+TGG | 0.413860 | 2.3:+36167262 | None:intergenic |
| GAACCGAAGGATTGAGTGTC+TGG | 0.416168 | 2.3:-36162575 | MS.gene067357:CDS |
| GGAAATAGGAGATGCAGTTT+GGG | 0.418307 | 2.3:-36162551 | MS.gene067357:CDS |
| TAAGTCAGCTTTCTCTGGTT+CGG | 0.423239 | 2.3:+36161724 | None:intergenic |
| CCTCCAGACACTCAATCCTT+CGG | 0.423683 | 2.3:+36162572 | None:intergenic |
| TATTCAAGCTATGGCAGAAA+TGG | 0.428109 | 2.3:-36161882 | MS.gene067357:CDS |
| TGATGAGTCTCAGTTTGAAT+TGG | 0.433284 | 2.3:-36166845 | MS.gene067357:CDS |
| GTTGGATATTTAGACCTAGA+TGG | 0.442309 | 2.3:+36161221 | None:intergenic |
| AGGACCAAGTGGATGAAGAT+TGG | 0.442604 | 2.3:-36161394 | MS.gene067357:CDS |
| AAGCAATACCGAAGGAGGTA+TGG | 0.447171 | 2.3:-36161912 | MS.gene067357:CDS |
| AACTGCTGCAAAGGCTGAAA+GGG | 0.452186 | 2.3:-36161840 | MS.gene067357:CDS |
| CCTCGCCATGTTCGATTGGC+AGG | 0.454895 | 2.3:-36168171 | None:intergenic |
| AGCTCTTCCCATACCTCCTT+CGG | 0.465200 | 2.3:+36161904 | None:intergenic |
| CAGGAAGATAGAAGCAATGA+AGG | 0.477605 | 2.3:-36161276 | MS.gene067357:CDS |
| AAATCTAACACTGGAATGGA+TGG | 0.477921 | 2.3:+36167066 | None:intergenic |
| ACAGATGGAGAAGATTGAAC+AGG | 0.488063 | 2.3:+36166970 | None:intergenic |
| GAGATTGCACTAGTGGAATT+GGG | 0.491180 | 2.3:+36168129 | None:intergenic |
| ACTGCCTCGCCATGTTCGAT+TGG | 0.496738 | 2.3:-36168175 | None:intergenic |
| TGCAGCAGTTTGTTCTGCAA+TGG | 0.504538 | 2.3:+36161853 | None:intergenic |
| GAAGTGTGGGCGGACCATCT+AGG | 0.506101 | 2.3:-36161235 | MS.gene067357:intron |
| AGAGGAGGGGTTGGCCAATA+CGG | 0.510832 | 2.3:-36167004 | MS.gene067357:CDS |
| AAACTGCTGCAAAGGCTGAA+AGG | 0.515036 | 2.3:-36161841 | MS.gene067357:CDS |
| ACTTCCTTGGCTGAAGCTTG+TGG | 0.518365 | 2.3:+36167198 | None:intergenic |
| TGCAGAACAAACTGCTGCAA+AGG | 0.522244 | 2.3:-36161849 | MS.gene067357:CDS |
| CACCAAATCTAACACTGGAA+TGG | 0.533287 | 2.3:+36167062 | None:intergenic |
| AAATGCTGAAAATAAAGGAT+TGG | 0.533850 | 2.3:-36161789 | MS.gene067357:CDS |
| GGATATTCGAAAGCAACAAA+GGG | 0.546128 | 2.3:-36161819 | MS.gene067357:CDS |
| ATTATTTAGAGAAAAGCTAA+AGG | 0.546935 | 2.3:+36167125 | None:intergenic |
| GGGATATTCGAAAGCAACAA+AGG | 0.547460 | 2.3:-36161820 | MS.gene067357:CDS |
| TATTTCTGAAGAGGAGGGGT+TGG | 0.548272 | 2.3:-36167013 | MS.gene067357:CDS |
| GGAGACTGAGATTGCACTAG+TGG | 0.549896 | 2.3:+36168122 | None:intergenic |
| TAGAGAAAAGCTAAAGGAGG+AGG | 0.550542 | 2.3:+36167131 | None:intergenic |
| TTACAATTTGCAGATAATGT+CGG | 0.550814 | 2.3:-36162620 | MS.gene067357:intron |
| GTAACATTCTGACCAGTCAC+GGG | 0.552037 | 2.3:+36168062 | None:intergenic |
| AGCAATACCGAAGGAGGTAT+GGG | 0.552736 | 2.3:-36161911 | MS.gene067357:CDS |
| AGGATCCTTAGAAACCGTAT+TGG | 0.553054 | 2.3:+36166990 | None:intergenic |
| GGGAAGAGCTATTCAAGCTA+TGG | 0.554031 | 2.3:-36161891 | MS.gene067357:CDS |
| TGGAATCAATCGAGGAAGTG+TGG | 0.554352 | 2.3:-36161249 | MS.gene067357:CDS |
| ATAGAAGCAATGAAGGAAGG+TGG | 0.555130 | 2.3:-36161269 | MS.gene067357:CDS |
| CAGCAGCTTCCGGGTGACAA+AGG | 0.559695 | 2.3:-36167261 | MS.gene067357:CDS |
| GAGGTGTCCTGACGAAGTAA+AGG | 0.560366 | 2.3:-36161666 | MS.gene067357:intron |
| GGGAAGTCATTGAGTCACTC+GGG | 0.562221 | 2.3:-36162598 | MS.gene067357:CDS |
| ACCATACTTTGATTATTCGA+AGG | 0.567135 | 2.3:+36166889 | None:intergenic |
| TTCAGTTGCTGCATCTTGCG+TGG | 0.571910 | 2.3:-36166782 | MS.gene067357:CDS |
| TGGCTATGTGAACGATTTGA+AGG | 0.572118 | 2.3:-36161374 | MS.gene067357:CDS |
| TGCACTAGTGGAATTGGGAT+CGG | 0.572136 | 2.3:+36168134 | None:intergenic |
| TGTAACATTCTGACCAGTCA+CGG | 0.572286 | 2.3:+36168061 | None:intergenic |
| TGAGTCACTCGGGGAACCGA+AGG | 0.576536 | 2.3:-36162588 | MS.gene067357:CDS |
| TTCCGCCTGCCAATCGAACA+TGG | 0.578225 | 2.3:+36168166 | None:intergenic |
| TGCATATTTCTGAAGAGGAG+GGG | 0.579038 | 2.3:-36167017 | MS.gene067357:CDS |
| TCCCAAACACTGATATGCAC+AGG | 0.582176 | 2.3:-36162514 | MS.gene067357:CDS |
| CGTGCATATTTCTGAAGAGG+AGG | 0.586604 | 2.3:-36167019 | MS.gene067357:CDS |
| ACTGTCACCAAATCTAACAC+TGG | 0.587425 | 2.3:+36167057 | None:intergenic |
| GATAGTATCCTGAGGTGCAA+CGG | 0.587517 | 2.3:+36166711 | None:intergenic |
| GGGGAAGTCATTGAGTCACT+CGG | 0.590627 | 2.3:-36162599 | MS.gene067357:CDS |
| AACACTGGAATGGATGGGAT+CGG | 0.591089 | 2.3:+36167072 | None:intergenic |
| GTGCATATTTCTGAAGAGGA+GGG | 0.592120 | 2.3:-36167018 | MS.gene067357:CDS |
| TGGAATTGACGAATTTCTAG+TGG | 0.593112 | 2.3:+36161317 | None:intergenic |
| CGCCATGTTCGATTGGCAGG+CGG | 0.593971 | 2.3:-36168168 | None:intergenic |
| TATGGTTGATCAAGCTGCCA+TGG | 0.594925 | 2.3:-36166872 | MS.gene067357:CDS |
| GGAATCAATCGAGGAAGTGT+GGG | 0.596116 | 2.3:-36161248 | MS.gene067357:CDS |
| TGTCGTGCATATTTCTGAAG+AGG | 0.603892 | 2.3:-36167022 | MS.gene067357:CDS |
| AAAAGATATTCACTGTGTTG+AGG | 0.607254 | 2.3:-36161685 | MS.gene067357:CDS |
| ATAGCCAATCTTCATCCACT+TGG | 0.610115 | 2.3:+36161390 | None:intergenic |
| AATCTAACACTGGAATGGAT+GGG | 0.610217 | 2.3:+36167067 | None:intergenic |
| GAGGAAGCTCCTTTGTCACC+CGG | 0.614467 | 2.3:+36167252 | None:intergenic |
| ATTTAGAGAAAAGCTAAAGG+AGG | 0.623134 | 2.3:+36167128 | None:intergenic |
| AAGATAGAAGCAATGAAGGA+AGG | 0.625382 | 2.3:-36161272 | MS.gene067357:CDS |
| TGTTGTGCACTCTACAGTTG+CGG | 0.625596 | 2.3:-36168087 | MS.gene067357:CDS |
| TCGGTCTCTCCAAGAAATTG+TGG | 0.627925 | 2.3:+36161743 | None:intergenic |
| ATTCAAACTGAGACTCATCA+AGG | 0.628248 | 2.3:+36166848 | None:intergenic |
| GAAGCAAGCAATACCGAAGG+AGG | 0.630174 | 2.3:-36161917 | MS.gene067357:CDS |
| ATCAATCGAGGAAGTGTGGG+CGG | 0.630964 | 2.3:-36161245 | MS.gene067357:CDS |
| ATCTTTACAGTATGTCGCAG+TGG | 0.632222 | 2.3:-36167223 | MS.gene067357:CDS |
| AGTTGCTGCATCTTGCGTGG+TGG | 0.636190 | 2.3:-36166779 | MS.gene067357:CDS |
| ACGCAAGATGCAGCAACTGA+AGG | 0.641431 | 2.3:+36166784 | None:intergenic |
| TAACATTCTGACCAGTCACG+GGG | 0.650717 | 2.3:+36168063 | None:intergenic |
| GGTTCCACAAGCTTCAGCCA+AGG | 0.652287 | 2.3:-36167202 | MS.gene067357:CDS |
| TCGTTTCTTTCAGGACCAAG+TGG | 0.653481 | 2.3:-36161405 | MS.gene067357:intron |
| ATACTGTAAAGATCCAGAAG+AGG | 0.657496 | 2.3:+36167233 | None:intergenic |
| GTCTCTCCAAGAAATTGTGG+AGG | 0.658532 | 2.3:+36161746 | None:intergenic |
| ACAATTTGCAGATAATGTCG+GGG | 0.658616 | 2.3:-36162618 | MS.gene067357:intron |
| CTGAGACTCATCAAGGACCA+TGG | 0.661066 | 2.3:+36166855 | None:intergenic |
| GGAGAAGCAAGCAATACCGA+AGG | 0.661940 | 2.3:-36161920 | MS.gene067357:CDS |
| CCGAAGGATTGAGTGTCTGG+AGG | 0.663528 | 2.3:-36162572 | MS.gene067357:CDS |
| CTATGTGAACGATTTGAAGG+TGG | 0.665932 | 2.3:-36161371 | MS.gene067357:CDS |
| GGGATCGGAAGCGCACCTTG+TGG | 0.669101 | 2.3:+36167087 | None:intergenic |
| ACTAGTGGAATTGGGATCGG+AGG | 0.671025 | 2.3:+36168137 | None:intergenic |
| GTCACAGACTCAGTTCCACA+AGG | 0.687036 | 2.3:-36167102 | MS.gene067357:CDS |
| AAGGAAGGTGGAATCAATCG+AGG | 0.691870 | 2.3:-36161257 | MS.gene067357:CDS |
| GGAAGTCATTGAGTCACTCG+GGG | 0.700450 | 2.3:-36162597 | MS.gene067357:CDS |
| TGAACAAGGATAGTATCCTG+AGG | 0.743465 | 2.3:+36166703 | None:intergenic |
| AACATTCTGACCAGTCACGG+GGG | 0.768860 | 2.3:+36168064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 36160525 | 36168186 | 36160525 | ID=MS.gene067357 |
| chr2.3 | mRNA | 36160525 | 36168186 | 36160525 | ID=MS.gene067357.t1;Parent=MS.gene067357 |
| chr2.3 | exon | 36168075 | 36168186 | 36168075 | ID=MS.gene067357.t1.exon1;Parent=MS.gene067357.t1 |
| chr2.3 | CDS | 36168075 | 36168186 | 36168075 | ID=cds.MS.gene067357.t1;Parent=MS.gene067357.t1 |
| chr2.3 | exon | 36166708 | 36167291 | 36166708 | ID=MS.gene067357.t1.exon2;Parent=MS.gene067357.t1 |
| chr2.3 | CDS | 36166708 | 36167291 | 36166708 | ID=cds.MS.gene067357.t1;Parent=MS.gene067357.t1 |
| chr2.3 | exon | 36162509 | 36162629 | 36162509 | ID=MS.gene067357.t1.exon3;Parent=MS.gene067357.t1 |
| chr2.3 | CDS | 36162509 | 36162629 | 36162509 | ID=cds.MS.gene067357.t1;Parent=MS.gene067357.t1 |
| chr2.3 | exon | 36161667 | 36161953 | 36161667 | ID=MS.gene067357.t1.exon4;Parent=MS.gene067357.t1 |
| chr2.3 | CDS | 36161667 | 36161953 | 36161667 | ID=cds.MS.gene067357.t1;Parent=MS.gene067357.t1 |
| chr2.3 | exon | 36161236 | 36161414 | 36161236 | ID=MS.gene067357.t1.exon5;Parent=MS.gene067357.t1 |
| chr2.3 | CDS | 36161236 | 36161414 | 36161236 | ID=cds.MS.gene067357.t1;Parent=MS.gene067357.t1 |
| chr2.3 | exon | 36160525 | 36160534 | 36160525 | ID=MS.gene067357.t1.exon6;Parent=MS.gene067357.t1 |
| chr2.3 | CDS | 36160525 | 36160534 | 36160525 | ID=cds.MS.gene067357.t1;Parent=MS.gene067357.t1 |
| Gene Sequence |
| Protein sequence |