Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067726.t1 | GAU13159.1 | 74.6 | 59 | 6 | 1 | 45 | 103 | 273 | 322 | 4.40E-13 | 84.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067726.t1 | Q9LZX8 | 56.7 | 60 | 23 | 2 | 54 | 113 | 281 | 337 | 3.7e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067726.t1 | A0A2Z6MJ94 | 74.6 | 59 | 6 | 1 | 45 | 103 | 273 | 322 | 3.2e-13 | 84.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060553 | MS.gene067726 | 0.80715 | 5.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067726.t1 | MTR_7g075030 | 53.125 | 96 | 27 | 4 | 10 | 103 | 239 | 318 | 1.46e-21 | 90.9 |
| MS.gene067726.t1 | MTR_3g064940 | 71.739 | 46 | 13 | 0 | 1 | 46 | 244 | 289 | 4.95e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGATAACCTTGTATAATT+CGG | 0.341234 | 4.2:+49076275 | None:intergenic |
| TTGAAAATTCTTCTTGAAGC+TGG | 0.343668 | 4.2:-49078588 | MS.gene067726:CDS |
| TTGCAGGGAGCGTTGGAATA+TGG | 0.387255 | 4.2:-49075945 | MS.gene067726:intron |
| GCCTTCAATTCCTGTTCCAT+TGG | 0.389915 | 4.2:+49078699 | None:intergenic |
| ATTTGTTCCGCCAATGGAAC+AGG | 0.406733 | 4.2:-49078709 | None:intergenic |
| TATGTTGGATGCAAGGTATT+GGG | 0.411203 | 4.2:-49078466 | MS.gene067726:CDS |
| ACAAGCTGAAATTGAAGTAT+AGG | 0.414537 | 4.2:-49075168 | MS.gene067726:CDS |
| GATGCAAGGTATTGGGAGAT+TGG | 0.419649 | 4.2:-49078459 | MS.gene067726:intron |
| ATATGTTGGATGCAAGGTAT+TGG | 0.422599 | 4.2:-49078467 | MS.gene067726:CDS |
| TCTTCTTGAAGCTGGGAGTA+AGG | 0.424697 | 4.2:-49078580 | MS.gene067726:CDS |
| AGTTTCAACCACATCTGAAA+TGG | 0.434434 | 4.2:+49075911 | None:intergenic |
| TTCAGATGTGGTTGAAACTT+CGG | 0.458890 | 4.2:-49075907 | MS.gene067726:CDS |
| TGGGAGTAAGGTTGCGGCGA+TGG | 0.460634 | 4.2:-49078568 | MS.gene067726:CDS |
| TGAAAATTCTTCTTGAAGCT+GGG | 0.464708 | 4.2:-49078587 | MS.gene067726:CDS |
| TCATTGATATTATTGTCAAA+TGG | 0.472865 | 4.2:-49078654 | MS.gene067726:CDS |
| GCCAATGGAACAGGAATTGA+AGG | 0.504708 | 4.2:-49078700 | None:intergenic |
| GAAACTTCGGTGAGCAAACA+AGG | 0.509029 | 4.2:-49075894 | MS.gene067726:CDS |
| GTGACAGAATTCACAATCAA+TGG | 0.510051 | 4.2:+49076297 | None:intergenic |
| TGAAGCTGGGAGTAAGGTTG+CGG | 0.527529 | 4.2:-49078574 | MS.gene067726:CDS |
| TTCGACGGATAAAGATATGT+TGG | 0.536663 | 4.2:-49078481 | MS.gene067726:CDS |
| TTCTGTCACCGAATTATACA+AGG | 0.539024 | 4.2:-49076283 | MS.gene067726:intron |
| CTCTGTTTCTGAGATGGACA+AGG | 0.539403 | 4.2:-49075197 | MS.gene067726:CDS |
| TTATTGATTGCAGGGAGCGT+TGG | 0.540616 | 4.2:-49075952 | MS.gene067726:intron |
| GACGGTTGAGACTACAAGTC+CGG | 0.547399 | 4.2:-49078517 | MS.gene067726:CDS |
| AAGTATCCGTTTCTCTCTTG+CGG | 0.554018 | 4.2:-49078617 | MS.gene067726:CDS |
| GACTAACTCTGTTTCTGAGA+TGG | 0.558357 | 4.2:-49075203 | MS.gene067726:CDS |
| TAGATTCCGCAAGAGAGAAA+CGG | 0.559557 | 4.2:+49078611 | None:intergenic |
| TTCGTCAACCATTTCAGATG+TGG | 0.562559 | 4.2:-49075919 | MS.gene067726:CDS |
| GAAACAGAGTTAGTCATCAA+AGG | 0.570516 | 4.2:+49075211 | None:intergenic |
| TGAGCAAACAAGGCTTAAAG+AGG | 0.587033 | 4.2:-49075884 | MS.gene067726:CDS |
| ATAAAGATATGTTGGATGCA+AGG | 0.594071 | 4.2:-49078473 | MS.gene067726:CDS |
| GGCGGATTTGCTGAATTCGA+CGG | 0.602022 | 4.2:-49078496 | MS.gene067726:CDS |
| GGAACAGGAATTGAAGGCAC+AGG | 0.606830 | 4.2:-49078694 | MS.gene067726:CDS |
| GTCGAATTCAGCAAATCCGC+CGG | 0.613451 | 4.2:+49078498 | None:intergenic |
| TGCGTTTCAGACTACTGCGA+CGG | 0.647410 | 4.2:-49078535 | MS.gene067726:CDS |
| AATGATAATGTTCTAGATTG+CGG | 0.652129 | 4.2:-49075837 | MS.gene067726:intron |
| GTTGCGGCGATGGCTCATGA+TGG | 0.676101 | 4.2:-49078558 | MS.gene067726:CDS |
| GGTTGAGACTACAAGTCCGG+CGG | 0.733892 | 4.2:-49078514 | MS.gene067726:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTTAAATATATTAATTG+TGG | + | chr4.2:49078279-49078298 | None:intergenic | 10.0% |
| !! | TAAATACAAACAAAAATAAT+GGG | + | chr4.2:49077766-49077785 | None:intergenic | 10.0% |
| !!! | TATATTTTTCTGATAATATT+TGG | - | chr4.2:49077800-49077819 | MS.gene067726:intron | 10.0% |
| !! | AAACACATAGAAAATTATTT+GGG | + | chr4.2:49075561-49075580 | None:intergenic | 15.0% |
| !! | ATTTGATTAAGAAAAAGAAA+AGG | + | chr4.2:49076702-49076721 | None:intergenic | 15.0% |
| !! | CTAAATACAAACAAAAATAA+TGG | + | chr4.2:49077767-49077786 | None:intergenic | 15.0% |
| !! | TTAAATATATTAATTGTGGA+TGG | + | chr4.2:49078275-49078294 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTTTGTTTTTGT+TGG | + | chr4.2:49076854-49076873 | None:intergenic | 15.0% |
| !!! | AACAAAAACAAAAACATTTT+TGG | - | chr4.2:49076853-49076872 | MS.gene067726:intron | 15.0% |
| !!! | ATTAAACTTTTAAATGTGTT+TGG | - | chr4.2:49078028-49078047 | MS.gene067726:intron | 15.0% |
| !!! | ATTTTAATACACCATTTTTT+TGG | - | chr4.2:49077625-49077644 | MS.gene067726:intron | 15.0% |
| !!! | ATTTTCACTTTATTAATCAT+TGG | - | chr4.2:49078178-49078197 | MS.gene067726:intron | 15.0% |
| !!! | CATTATTTTTGTTTGTATTT+AGG | - | chr4.2:49077765-49077784 | MS.gene067726:intron | 15.0% |
| !!! | TAAACATGATTATTTTTCAT+TGG | + | chr4.2:49076726-49076745 | None:intergenic | 15.0% |
| !!! | TTAAAACTGATTTTTTATGA+AGG | - | chr4.2:49078347-49078366 | MS.gene067726:intron | 15.0% |
| !!! | TTGAAATTTGAAATGATTAA+AGG | + | chr4.2:49078682-49078701 | None:intergenic | 15.0% |
| !!! | TTTTATTTTAGTTGAATTGA+AGG | + | chr4.2:49076936-49076955 | None:intergenic | 15.0% |
| !! | AAAAGAAAAGGAAAATACAA+TGG | + | chr4.2:49076690-49076709 | None:intergenic | 20.0% |
| !! | AAAGAAAAGGAAAATACAAT+GGG | + | chr4.2:49076689-49076708 | None:intergenic | 20.0% |
| !! | AAATAGAAACAACATACTAA+AGG | + | chr4.2:49076257-49076276 | None:intergenic | 20.0% |
| !! | AAATCTAAATTAGTTGTTAG+TGG | + | chr4.2:49078418-49078437 | None:intergenic | 20.0% |
| !! | AAATTAGAATGTAAAGACTT+AGG | - | chr4.2:49076375-49076394 | MS.gene067726:intron | 20.0% |
| !! | AATTAGTCATTTGCAAAATA+TGG | + | chr4.2:49076751-49076770 | None:intergenic | 20.0% |
| !! | ATAAAAACATGCTAATGATA+AGG | + | chr4.2:49078251-49078270 | None:intergenic | 20.0% |
| !! | ATATTGCAGATTATAACATT+GGG | - | chr4.2:49077546-49077565 | MS.gene067726:intron | 20.0% |
| !! | GAAAATCTAAATTAAAGATC+TGG | + | chr4.2:49078455-49078474 | None:intergenic | 20.0% |
| !! | GAAACACATAGAAAATTATT+TGG | + | chr4.2:49075562-49075581 | None:intergenic | 20.0% |
| !! | TCATTGATATTATTGTCAAA+TGG | - | chr4.2:49075121-49075140 | MS.gene067726:intron | 20.0% |
| !!! | AAAGTGGCTTTTTTTTTTTA+TGG | - | chr4.2:49077370-49077389 | MS.gene067726:intron | 20.0% |
| !!! | ACATTTTTAAAACCATTCTA+AGG | + | chr4.2:49076163-49076182 | None:intergenic | 20.0% |
| !!! | AGTCTTTACATTCTAATTTT+TGG | + | chr4.2:49076374-49076393 | None:intergenic | 20.0% |
| !!! | ATCATTTTCAAAATAAACCT+TGG | - | chr4.2:49076654-49076673 | MS.gene067726:intron | 20.0% |
| !!! | ATTGATAACCTTGTATAATT+CGG | + | chr4.2:49077503-49077522 | None:intergenic | 20.0% |
| !!! | GATCTTTAATTTAGATTTTC+TGG | - | chr4.2:49078455-49078474 | MS.gene067726:intron | 20.0% |
| !!! | GGTTTTTTTTTTTTTGTTGA+GGG | - | chr4.2:49077347-49077366 | MS.gene067726:intron | 20.0% |
| !!! | GTTGATTTTAAGTTTGAAAA+TGG | + | chr4.2:49076832-49076851 | None:intergenic | 20.0% |
| !!! | TAAAGTTTGTTTGAAACATA+TGG | + | chr4.2:49078330-49078349 | None:intergenic | 20.0% |
| !!! | TATTTGAAGTATTTATTCTG+AGG | - | chr4.2:49078216-49078235 | MS.gene067726:intron | 20.0% |
| !!! | TCATTTTCAAAATAAACCTT+GGG | - | chr4.2:49076655-49076674 | MS.gene067726:intron | 20.0% |
| !!! | TGGTTTTTTTTTTTTTGTTG+AGG | - | chr4.2:49077346-49077365 | MS.gene067726:intron | 20.0% |
| !!! | TTTTTTTCTTAGTGTTTTTG+TGG | - | chr4.2:49075588-49075607 | MS.gene067726:intron | 20.0% |
| ! | AAAACTTCTCTAATATCATG+AGG | - | chr4.2:49076118-49076137 | MS.gene067726:intron | 25.0% |
| ! | AACGAAAACAGAATAATGTT+AGG | + | chr4.2:49078532-49078551 | None:intergenic | 25.0% |
| ! | AAGAAAAAATGAGATATCAC+CGG | - | chr4.2:49077173-49077192 | MS.gene067726:intron | 25.0% |
| ! | AATAAACTGAGATTGCAATA+TGG | - | chr4.2:49077520-49077539 | MS.gene067726:intron | 25.0% |
| ! | ATATAAGATGTGAAATGCTA+TGG | + | chr4.2:49076319-49076338 | None:intergenic | 25.0% |
| ! | ATGAGATTTATGAAATTGTG+AGG | + | chr4.2:49076777-49076796 | None:intergenic | 25.0% |
| ! | CATATTGCAGATTATAACAT+TGG | - | chr4.2:49077545-49077564 | MS.gene067726:intron | 25.0% |
| ! | GAAATTAATAACCTCATGTT+TGG | - | chr4.2:49078301-49078320 | MS.gene067726:intron | 25.0% |
| ! | GGTGTATTAAAATCAGAAAA+CGG | + | chr4.2:49077618-49077637 | None:intergenic | 25.0% |
| ! | GTATGTTTAGATGAATGTTT+AGG | - | chr4.2:49076579-49076598 | MS.gene067726:intron | 25.0% |
| ! | GTTGAAAAATTATCTGTGAT+TGG | - | chr4.2:49078130-49078149 | MS.gene067726:intron | 25.0% |
| !! | AATATTTGGTTATTGATTGC+AGG | - | chr4.2:49077814-49077833 | MS.gene067726:intron | 25.0% |
| !! | AATGATAATGTTCTAGATTG+CGG | - | chr4.2:49077938-49077957 | MS.gene067726:intron | 25.0% |
| !! | ATATTTGGTTATTGATTGCA+GGG | - | chr4.2:49077815-49077834 | MS.gene067726:intron | 25.0% |
| !! | CATATTCTTGAAGTGAATTT+TGG | + | chr4.2:49075787-49075806 | None:intergenic | 25.0% |
| !! | TTCTAGCTATATATCTAAAG+TGG | + | chr4.2:49076530-49076549 | None:intergenic | 25.0% |
| !!! | GTGATATCTCATTTTTTCTT+GGG | + | chr4.2:49077173-49077192 | None:intergenic | 25.0% |
| !!! | GTGTAATTTTGAAGTGATTT+TGG | - | chr4.2:49075852-49075871 | MS.gene067726:CDS | 25.0% |
| AAATTAAAGACGGTTCCTAT+AGG | - | chr4.2:49077055-49077074 | MS.gene067726:intron | 30.0% | |
| AAATTTAAGTAGCTACCCAT+TGG | - | chr4.2:49077994-49078013 | MS.gene067726:intron | 30.0% | |
| ACAAGCTGAAATTGAAGTAT+AGG | - | chr4.2:49078607-49078626 | MS.gene067726:CDS | 30.0% | |
| AGCAAAGATAACATATCAAC+AGG | + | chr4.2:49077408-49077427 | None:intergenic | 30.0% | |
| ATAAAGATATGTTGGATGCA+AGG | - | chr4.2:49075302-49075321 | MS.gene067726:intron | 30.0% | |
| ATAGGATACTATAGTCGTTA+TGG | - | chr4.2:49077073-49077092 | MS.gene067726:intron | 30.0% | |
| CTCTAATATCATGAGGATTT+AGG | - | chr4.2:49076125-49076144 | MS.gene067726:intron | 30.0% | |
| CTTAGTATTAGCAAAGAGTT+AGG | + | chr4.2:49077437-49077456 | None:intergenic | 30.0% | |
| CTTGCAATCTTTATGATCTT+TGG | - | chr4.2:49076034-49076053 | MS.gene067726:intron | 30.0% | |
| GAAAACCAAGATAAAACAAG+CGG | - | chr4.2:49077232-49077251 | MS.gene067726:intron | 30.0% | |
| TAACGACTATAGTATCCTAT+AGG | + | chr4.2:49077073-49077092 | None:intergenic | 30.0% | |
| TAATGCCAACAAAAACCAAT+GGG | + | chr4.2:49078012-49078031 | None:intergenic | 30.0% | |
| TACGAAAATCTAACACAACA+GGG | + | chr4.2:49075530-49075549 | None:intergenic | 30.0% | |
| TAGGATACTATAGTCGTTAT+GGG | - | chr4.2:49077074-49077093 | MS.gene067726:intron | 30.0% | |
| TCGAATTTGATGCATAATTG+TGG | - | chr4.2:49075878-49075897 | MS.gene067726:CDS | 30.0% | |
| TCTTCACTTAGAACATTCTT+AGG | - | chr4.2:49076983-49077002 | MS.gene067726:intron | 30.0% | |
| TGAAAATTCTTCTTGAAGCT+GGG | - | chr4.2:49075188-49075207 | MS.gene067726:CDS | 30.0% | |
| TGAATTTGATCTCCAAAATC+AGG | + | chr4.2:49077686-49077705 | None:intergenic | 30.0% | |
| TGATGTTGTTCACATTTGTT+TGG | + | chr4.2:49076629-49076648 | None:intergenic | 30.0% | |
| TTAATGCCAACAAAAACCAA+TGG | + | chr4.2:49078013-49078032 | None:intergenic | 30.0% | |
| TTGAAAATTCTTCTTGAAGC+TGG | - | chr4.2:49075187-49075206 | MS.gene067726:CDS | 30.0% | |
| TTGCACGTTAAAAAATTGTG+AGG | - | chr4.2:49075615-49075634 | MS.gene067726:intron | 30.0% | |
| ! | GAATGTTCTAAGTGAAGAAT+TGG | + | chr4.2:49076981-49077000 | None:intergenic | 30.0% |
| ! | TCTGTTTTCGTTTATTTGAC+AGG | - | chr4.2:49078540-49078559 | MS.gene067726:CDS | 30.0% |
| !! | ACATTTTTGGAAGAGAACTA+CGG | - | chr4.2:49076866-49076885 | MS.gene067726:intron | 30.0% |
| !! | ACCATTCTAAGGTATAGTTA+AGG | + | chr4.2:49076152-49076171 | None:intergenic | 30.0% |
| !! | CCATTCTAAGGTATAGTTAA+GGG | + | chr4.2:49076151-49076170 | None:intergenic | 30.0% |
| !! | TTGAGCGTCGTTTAATATTT+TGG | - | chr4.2:49078064-49078083 | MS.gene067726:intron | 30.0% |
| !! | TTTGAAGTGAATTTTCCCTT+TGG | - | chr4.2:49075917-49075936 | MS.gene067726:CDS | 30.0% |
| !!! | ATACACCATTTTTTTGGTTC+AGG | - | chr4.2:49077631-49077650 | MS.gene067726:intron | 30.0% |
| !!! | ATCTCATTTTTTCTTGGGAA+GGG | + | chr4.2:49077168-49077187 | None:intergenic | 30.0% |
| !!! | CTTGTTTTATCTTGGTTTTC+GGG | + | chr4.2:49077232-49077251 | None:intergenic | 30.0% |
| !!! | GCTTGTTTTATCTTGGTTTT+CGG | + | chr4.2:49077233-49077252 | None:intergenic | 30.0% |
| !!! | GGTGATATCTCATTTTTTCT+TGG | + | chr4.2:49077174-49077193 | None:intergenic | 30.0% |
| !!! | TACACCATTTTTTTGGTTCA+GGG | - | chr4.2:49077632-49077651 | MS.gene067726:intron | 30.0% |
| !!! | TATCTCATTTTTTCTTGGGA+AGG | + | chr4.2:49077169-49077188 | None:intergenic | 30.0% |
| !!! | TGGCTTTTTTTTTTTATGGC+TGG | - | chr4.2:49077374-49077393 | MS.gene067726:intron | 30.0% |
| !!! | TTTTTTTTGTTGAGGGAAAG+TGG | - | chr4.2:49077354-49077373 | MS.gene067726:intron | 30.0% |
| AAATCAGGACCAAACATAGT+AGG | + | chr4.2:49077671-49077690 | None:intergenic | 35.0% | |
| AAGGAGACATGAAACAAGAA+AGG | + | chr4.2:49076295-49076314 | None:intergenic | 35.0% | |
| ACATATGGTTACCAAACATG+AGG | + | chr4.2:49078315-49078334 | None:intergenic | 35.0% | |
| ACGAAAATCTAACACAACAG+GGG | + | chr4.2:49075529-49075548 | None:intergenic | 35.0% | |
| ACTTTGTATTGAGTCTGCTA+AGG | - | chr4.2:49077717-49077736 | MS.gene067726:intron | 35.0% | |
| AGATGTGAAATGCTATGGAA+AGG | + | chr4.2:49076314-49076333 | None:intergenic | 35.0% | |
| AGCTACTTAAATTTCCCTTC+TGG | + | chr4.2:49077988-49078007 | None:intergenic | 35.0% | |
| AGTGACTTAGTTCAAGAAGA+AGG | + | chr4.2:49076097-49076116 | None:intergenic | 35.0% | |
| AGTTTCAACCACATCTGAAA+TGG | + | chr4.2:49077867-49077886 | None:intergenic | 35.0% | |
| ATATGTTGGATGCAAGGTAT+TGG | - | chr4.2:49075308-49075327 | MS.gene067726:intron | 35.0% | |
| CAAGACCATAGAATGTATCT+AGG | - | chr4.2:49076436-49076455 | MS.gene067726:intron | 35.0% | |
| CCCTTAACTATACCTTAGAA+TGG | - | chr4.2:49076148-49076167 | MS.gene067726:intron | 35.0% | |
| CGAAACTATCTTGTGAAACA+AGG | - | chr4.2:49076000-49076019 | MS.gene067726:intron | 35.0% | |
| CTACGAAAATCTAACACAAC+AGG | + | chr4.2:49075531-49075550 | None:intergenic | 35.0% | |
| GAAACAGAGTTAGTCATCAA+AGG | + | chr4.2:49078567-49078586 | None:intergenic | 35.0% | |
| GAGTTTGAAGAATAAGAGAG+AGG | + | chr4.2:49076810-49076829 | None:intergenic | 35.0% | |
| GCATGTTTAGATGTATGTCT+AGG | - | chr4.2:49076553-49076572 | MS.gene067726:intron | 35.0% | |
| GGAGATTGGTATGTATGAAA+CGG | - | chr4.2:49075330-49075349 | MS.gene067726:intron | 35.0% | |
| GTGACAGAATTCACAATCAA+TGG | + | chr4.2:49077481-49077500 | None:intergenic | 35.0% | |
| TACTTAAATTTCCCTTCTGG+TGG | + | chr4.2:49077985-49078004 | None:intergenic | 35.0% | |
| TATCTAGGCCAATGATGTAA+AGG | - | chr4.2:49076451-49076470 | MS.gene067726:intron | 35.0% | |
| TCCATTGTCCTTTACATCAT+TGG | + | chr4.2:49076462-49076481 | None:intergenic | 35.0% | |
| TTCAGATGTGGTTGAAACTT+CGG | - | chr4.2:49077868-49077887 | MS.gene067726:intron | 35.0% | |
| TTCGACGGATAAAGATATGT+TGG | - | chr4.2:49075294-49075313 | MS.gene067726:intron | 35.0% | |
| TTCTGTCACCGAATTATACA+AGG | - | chr4.2:49077492-49077511 | MS.gene067726:intron | 35.0% | |
| TTGATGCATAATTGTGGCTT+TGG | - | chr4.2:49075884-49075903 | MS.gene067726:CDS | 35.0% | |
| ! | AAGTGAATTTTCCCTTTGGT+TGG | - | chr4.2:49075921-49075940 | MS.gene067726:CDS | 35.0% |
| ! | ACTATGTTTGGTCCTGATTT+TGG | - | chr4.2:49077671-49077690 | MS.gene067726:intron | 35.0% |
| ! | ATTGGCCTAGATACATTCTA+TGG | + | chr4.2:49076444-49076463 | None:intergenic | 35.0% |
| ! | CAAGTCTCTTTCATCACTTT+TGG | - | chr4.2:49076183-49076202 | MS.gene067726:intron | 35.0% |
| ! | GTTCTAAGTGAAGAATTGGA+GGG | + | chr4.2:49076977-49076996 | None:intergenic | 35.0% |
| ! | TATGTTGGATGCAAGGTATT+GGG | - | chr4.2:49075309-49075328 | MS.gene067726:intron | 35.0% |
| ! | TGTTCTAAGTGAAGAATTGG+AGG | + | chr4.2:49076978-49076997 | None:intergenic | 35.0% |
| !! | CACAATCAATGGTGCTATTA+CGG | + | chr4.2:49077470-49077489 | None:intergenic | 35.0% |
| !! | GTGCAACATTTTGATGCTTT+TGG | - | chr4.2:49075806-49075825 | MS.gene067726:intron | 35.0% |
| !!! | ACACCATTTTTTTGGTTCAG+GGG | - | chr4.2:49077633-49077652 | MS.gene067726:intron | 35.0% |
| AAGTATCCGTTTCTCTCTTG+CGG | - | chr4.2:49075158-49075177 | MS.gene067726:CDS | 40.0% | |
| CACGTTTGAACCTTTCTAAC+CGG | + | chr4.2:49077195-49077214 | None:intergenic | 40.0% | |
| CGAAAATCTAACACAACAGG+GGG | + | chr4.2:49075528-49075547 | None:intergenic | 40.0% | |
| GCCAATGATGTAAAGGACAA+TGG | - | chr4.2:49076458-49076477 | MS.gene067726:intron | 40.0% | |
| GCTATGCTACCTACTATGTT+TGG | - | chr4.2:49077659-49077678 | MS.gene067726:intron | 40.0% | |
| GTGGATTTGATCCCTTAAAC+GGG | - | chr4.2:49076888-49076907 | MS.gene067726:intron | 40.0% | |
| TAGATTCCGCAAGAGAGAAA+CGG | + | chr4.2:49075167-49075186 | None:intergenic | 40.0% | |
| TATTGAGTCTGCTAAGGATG+TGG | - | chr4.2:49077723-49077742 | MS.gene067726:intron | 40.0% | |
| TGAGCAAACAAGGCTTAAAG+AGG | - | chr4.2:49077891-49077910 | MS.gene067726:intron | 40.0% | |
| TGGTATGTATGAAACGGCTT+TGG | - | chr4.2:49075336-49075355 | MS.gene067726:intron | 40.0% | |
| TTACCAAAAACGCTCAGACA+GGG | + | chr4.2:49075489-49075508 | None:intergenic | 40.0% | |
| TTCGTCAACCATTTCAGATG+TGG | - | chr4.2:49077856-49077875 | MS.gene067726:intron | 40.0% | |
| TTCTTCCTCTTTCCTTCTAC+TGG | + | chr4.2:49075385-49075404 | None:intergenic | 40.0% | |
| ! | ACCTTTGCTCGTGGTAATTT+TGG | - | chr4.2:49075726-49075745 | MS.gene067726:intron | 40.0% |
| ! | GGTGGATTTGATCCCTTAAA+CGG | - | chr4.2:49076887-49076906 | MS.gene067726:intron | 40.0% |
| ! | TGAGATATCACCGGTTAGAA+AGG | - | chr4.2:49077182-49077201 | MS.gene067726:intron | 40.0% |
| ! | TGGAGGGAGAAGAATGTTTT+TGG | + | chr4.2:49076961-49076980 | None:intergenic | 40.0% |
| !! | ACAATGGGATTTTGATCCCA+AGG | + | chr4.2:49076674-49076693 | None:intergenic | 40.0% |
| !! | ATGTATGAAACGGCTTTGGA+AGG | - | chr4.2:49075340-49075359 | MS.gene067726:intron | 40.0% |
| !! | GACTAACTCTGTTTCTGAGA+TGG | - | chr4.2:49078572-49078591 | MS.gene067726:CDS | 40.0% |
| !! | TCTTTCCTTCTACTGGTTTG+CGG | + | chr4.2:49075378-49075397 | None:intergenic | 40.0% |
| !! | TTTTTGGAAGAGAACTACGG+TGG | - | chr4.2:49076869-49076888 | MS.gene067726:intron | 40.0% |
| !!! | AGCTACCCATTGGTTTTTGT+TGG | - | chr4.2:49078004-49078023 | MS.gene067726:intron | 40.0% |
| !!! | CACCATTTTTTTGGTTCAGG+GGG | - | chr4.2:49077634-49077653 | MS.gene067726:intron | 40.0% |
| !!! | GCATCTGCTTCTTTTTTACG+AGG | - | chr4.2:49077306-49077325 | MS.gene067726:intron | 40.0% |
| ACACATAGCAGAATGCAGCA+AGG | + | chr4.2:49075450-49075469 | None:intergenic | 45.0% | |
| ACATAGCAGAATGCAGCAAG+GGG | + | chr4.2:49075448-49075467 | None:intergenic | 45.0% | |
| ACGAATATGAGCCACCAGAA+GGG | - | chr4.2:49077971-49077990 | MS.gene067726:intron | 45.0% | |
| AGCAAAACCCTTGAGAATCG+AGG | + | chr4.2:49077137-49077156 | None:intergenic | 45.0% | |
| AGCAAGCATACACCAACCAA+AGG | + | chr4.2:49075936-49075955 | None:intergenic | 45.0% | |
| AGCCCCCTGAACCAAAAAAA+TGG | + | chr4.2:49077639-49077658 | None:intergenic | 45.0% | |
| CACATAGCAGAATGCAGCAA+GGG | + | chr4.2:49075449-49075468 | None:intergenic | 45.0% | |
| CATGAAACCACATCCCAAAG+GGG | + | chr4.2:49075764-49075783 | None:intergenic | 45.0% | |
| CTTACCAAAAACGCTCAGAC+AGG | + | chr4.2:49075490-49075509 | None:intergenic | 45.0% | |
| GAAAACGGTAGTAACAACGC+AGG | + | chr4.2:49077603-49077622 | None:intergenic | 45.0% | |
| GAAACTTCGGTGAGCAAACA+AGG | - | chr4.2:49077881-49077900 | MS.gene067726:intron | 45.0% | |
| GAGTATGACGCAGAAGATGT+GGG | - | chr4.2:49078642-49078661 | MS.gene067726:CDS | 45.0% | |
| GCAAACCAGTAGAAGGAAAG+AGG | - | chr4.2:49075377-49075396 | MS.gene067726:intron | 45.0% | |
| GCAAGCATACACCAACCAAA+GGG | + | chr4.2:49075935-49075954 | None:intergenic | 45.0% | |
| GCATGAAACCACATCCCAAA+GGG | + | chr4.2:49075765-49075784 | None:intergenic | 45.0% | |
| GCCAAAATTACCACGAGCAA+AGG | + | chr4.2:49075730-49075749 | None:intergenic | 45.0% | |
| GCGCGCGTAGAAATTAAAGA+CGG | - | chr4.2:49077045-49077064 | MS.gene067726:intron | 45.0% | |
| GCTGATAACAACTTGCACGA+CGG | - | chr4.2:49077272-49077291 | MS.gene067726:intron | 45.0% | |
| TACCAAAAACGCTCAGACAG+GGG | + | chr4.2:49075488-49075507 | None:intergenic | 45.0% | |
| TACGAATATGAGCCACCAGA+AGG | - | chr4.2:49077970-49077989 | MS.gene067726:intron | 45.0% | |
| TCATAAATCTCATGCCCTCG+AGG | - | chr4.2:49076784-49076803 | MS.gene067726:intron | 45.0% | |
| TCTTCTTGAAGCTGGGAGTA+AGG | - | chr4.2:49075195-49075214 | MS.gene067726:CDS | 45.0% | |
| TGAGTATGACGCAGAAGATG+TGG | - | chr4.2:49078641-49078660 | MS.gene067726:CDS | 45.0% | |
| TTCTTGTGAACCTTTGCTCG+TGG | - | chr4.2:49075717-49075736 | MS.gene067726:intron | 45.0% | |
| TTGCCTACGTACCCGTTTAA+GGG | + | chr4.2:49076902-49076921 | None:intergenic | 45.0% | |
| ! | TTATTGATTGCAGGGAGCGT+TGG | - | chr4.2:49077823-49077842 | MS.gene067726:intron | 45.0% |
| !! | CTCTGTTTCTGAGATGGACA+AGG | - | chr4.2:49078578-49078597 | MS.gene067726:CDS | 45.0% |
| !! | GATGCAAGGTATTGGGAGAT+TGG | - | chr4.2:49075316-49075335 | MS.gene067726:intron | 45.0% |
| !!! | TGTCGCCGCTTGTTTTATCT+TGG | + | chr4.2:49077240-49077259 | None:intergenic | 45.0% |
| AACCCTTGAGAATCGAGGTC+CGG | + | chr4.2:49077132-49077151 | None:intergenic | 50.0% | |
| ACCAAAAACGCTCAGACAGG+GGG | + | chr4.2:49075487-49075506 | None:intergenic | 50.0% | |
| AGAAGAGAAGAAGAGCTGCG+TGG | - | chr4.2:49075404-49075423 | MS.gene067726:intron | 50.0% | |
| AGAATAAGAGAGAGGCCTCG+AGG | + | chr4.2:49076802-49076821 | None:intergenic | 50.0% | |
| AGGTTCAGTCGTTCGTTCTG+TGG | - | chr4.2:49077326-49077345 | MS.gene067726:intron | 50.0% | |
| AGTGGTGTGTGTGCATGTGT+CGG | + | chr4.2:49076512-49076531 | None:intergenic | 50.0% | |
| CTTAAACGGGTACGTAGGCA+AGG | - | chr4.2:49076901-49076920 | MS.gene067726:intron | 50.0% | |
| CTTGCCTACGTACCCGTTTA+AGG | + | chr4.2:49076903-49076922 | None:intergenic | 50.0% | |
| GAAGAGAAGAAGAGCTGCGT+GGG | - | chr4.2:49075405-49075424 | MS.gene067726:intron | 50.0% | |
| GAATAAGAGAGAGGCCTCGA+GGG | + | chr4.2:49076801-49076820 | None:intergenic | 50.0% | |
| GACGGTTGAGACTACAAGTC+CGG | - | chr4.2:49075258-49075277 | MS.gene067726:intron | 50.0% | |
| GATAACAACTTGCACGACGG+CGG | - | chr4.2:49077275-49077294 | MS.gene067726:intron | 50.0% | |
| GATCCCTTAAACGGGTACGT+AGG | - | chr4.2:49076896-49076915 | MS.gene067726:intron | 50.0% | |
| GGCATGAAACCACATCCCAA+AGG | + | chr4.2:49075766-49075785 | None:intergenic | 50.0% | |
| GTCGAATTCAGCAAATCCGC+CGG | + | chr4.2:49075280-49075299 | None:intergenic | 50.0% | |
| TGAAGCTGGGAGTAAGGTTG+CGG | - | chr4.2:49075201-49075220 | MS.gene067726:CDS | 50.0% | |
| TGCGTTTCAGACTACTGCGA+CGG | - | chr4.2:49075240-49075259 | MS.gene067726:intron | 50.0% | |
| ! | GGAACAGGAATTGAAGGCAC+AGG | - | chr4.2:49075081-49075100 | MS.gene067726:intron | 50.0% |
| !! | GAGTTGTTTTCGCTACGGGA+AGG | + | chr4.2:49077109-49077128 | None:intergenic | 50.0% |
| !! | GGCGGATTTGCTGAATTCGA+CGG | - | chr4.2:49075279-49075298 | MS.gene067726:intron | 50.0% |
| !! | TCCGGGAGTTGTTTTCGCTA+CGG | + | chr4.2:49077114-49077133 | None:intergenic | 50.0% |
| !! | TTGCAGGGAGCGTTGGAATA+TGG | - | chr4.2:49077830-49077849 | MS.gene067726:intron | 50.0% |
| !! | TTTCGCTACGGGAAGGTGTT+AGG | + | chr4.2:49077102-49077121 | None:intergenic | 50.0% |
| ACAAGCGGCGACAGAGTATG+TGG | - | chr4.2:49077247-49077266 | MS.gene067726:intron | 55.0% | |
| ACCCTTGAGAATCGAGGTCC+GGG | + | chr4.2:49077131-49077150 | None:intergenic | 55.0% | |
| CCAAAAACGCTCAGACAGGG+GGG | + | chr4.2:49075486-49075505 | None:intergenic | 55.0% | |
| CCCGTAGCGAAAACAACTCC+CGG | - | chr4.2:49077110-49077129 | MS.gene067726:intron | 55.0% | |
| GAAACCACATCCCAAAGGGG+AGG | + | chr4.2:49075761-49075780 | None:intergenic | 55.0% | |
| GCAGTTGAAGCCTCCCCTTT+GGG | - | chr4.2:49075748-49075767 | MS.gene067726:intron | 55.0% | |
| GGTTGAGACTACAAGTCCGG+CGG | - | chr4.2:49075261-49075280 | MS.gene067726:intron | 55.0% | |
| TCCCGGACCTCGATTCTCAA+GGG | - | chr4.2:49077127-49077146 | MS.gene067726:intron | 55.0% | |
| ! | GAGTGCCGCAAACCAGTAGA+AGG | - | chr4.2:49075370-49075389 | MS.gene067726:intron | 55.0% |
| ! | GCATGTGTCGGTGCTTGTGT+CGG | + | chr4.2:49076500-49076519 | None:intergenic | 55.0% |
| !! | CCGGGAGTTGTTTTCGCTAC+GGG | + | chr4.2:49077113-49077132 | None:intergenic | 55.0% |
| AAGAAGAGCTGCGTGGGCCT+GGG | - | chr4.2:49075411-49075430 | MS.gene067726:intron | 60.0% | |
| CTCCCGGACCTCGATTCTCA+AGG | - | chr4.2:49077126-49077145 | MS.gene067726:intron | 60.0% | |
| GCAGAATGCAGCAAGGGGCA+AGG | + | chr4.2:49075443-49075462 | None:intergenic | 60.0% | |
| GGCAGTTGAAGCCTCCCCTT+TGG | - | chr4.2:49075747-49075766 | MS.gene067726:intron | 60.0% | |
| GTTGCGGCGATGGCTCATGA+TGG | - | chr4.2:49075217-49075236 | MS.gene067726:intron | 60.0% | |
| TGGGAGTAAGGTTGCGGCGA+TGG | - | chr4.2:49075207-49075226 | MS.gene067726:CDS | 60.0% | |
| ! | CCCCCCTGTCTGAGCGTTTT+TGG | - | chr4.2:49075483-49075502 | MS.gene067726:intron | 60.0% |
| !! | GAAGCCTCCCCTTTGGGATG+TGG | - | chr4.2:49075754-49075773 | MS.gene067726:intron | 60.0% |
| GAAGAAGAGCTGCGTGGGCC+TGG | - | chr4.2:49075410-49075429 | MS.gene067726:intron | 65.0% | |
| TGCAGCAAGGGGCAAGGACC+AGG | + | chr4.2:49075437-49075456 | None:intergenic | 65.0% | |
| AAGGGGCAAGGACCAGGCCC+AGG | + | chr4.2:49075431-49075450 | None:intergenic | 70.0% | |
| ! | GAGCTGCGTGGGCCTGGGCC+TGG | - | chr4.2:49075416-49075435 | MS.gene067726:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 49075079 | 49078718 | 49075079 | ID=MS.gene067726 |
| chr4.2 | mRNA | 49075079 | 49078718 | 49075079 | ID=MS.gene067726.t1;Parent=MS.gene067726 |
| chr4.2 | exon | 49078460 | 49078718 | 49078460 | ID=MS.gene067726.t1.exon1;Parent=MS.gene067726.t1 |
| chr4.2 | CDS | 49078460 | 49078718 | 49078460 | ID=cds.MS.gene067726.t1;Parent=MS.gene067726.t1 |
| chr4.2 | exon | 49076284 | 49076321 | 49076284 | ID=MS.gene067726.t1.exon2;Parent=MS.gene067726.t1 |
| chr4.2 | CDS | 49076284 | 49076321 | 49076284 | ID=cds.MS.gene067726.t1;Parent=MS.gene067726.t1 |
| chr4.2 | exon | 49075838 | 49075961 | 49075838 | ID=MS.gene067726.t1.exon3;Parent=MS.gene067726.t1 |
| chr4.2 | CDS | 49075838 | 49075961 | 49075838 | ID=cds.MS.gene067726.t1;Parent=MS.gene067726.t1 |
| chr4.2 | exon | 49075154 | 49075235 | 49075154 | ID=MS.gene067726.t1.exon4;Parent=MS.gene067726.t1 |
| chr4.2 | CDS | 49075154 | 49075235 | 49075154 | ID=cds.MS.gene067726.t1;Parent=MS.gene067726.t1 |
| chr4.2 | exon | 49075079 | 49075085 | 49075079 | ID=MS.gene067726.t1.exon5;Parent=MS.gene067726.t1 |
| chr4.2 | CDS | 49075079 | 49075085 | 49075079 | ID=cds.MS.gene067726.t1;Parent=MS.gene067726.t1 |
| Gene Sequence |
| Protein sequence |
