Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067778.t1 | QCD97309.1 | 53.3 | 906 | 226 | 5 | 1 | 712 | 11 | 913 | 5.70E-264 | 920.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067778.t1 | P52914 | 72.9 | 432 | 116 | 1 | 282 | 712 | 24 | 455 | 9.8e-188 | 658.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067778.t1 | A0A4D6M7F8 | 53.3 | 906 | 226 | 5 | 1 | 712 | 11 | 913 | 4.1e-264 | 920.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053171 | MS.gene067778 | 0.804351 | 2.25E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067778.t1 | MTR_7g085180 | 96.056 | 431 | 17 | 0 | 282 | 712 | 25 | 455 | 0.0 | 871 |
MS.gene067778.t1 | MTR_7g085180 | 87.662 | 154 | 19 | 0 | 16 | 169 | 17 | 170 | 4.48e-87 | 281 |
MS.gene067778.t1 | MTR_7g085180 | 66.875 | 160 | 11 | 1 | 166 | 283 | 277 | 436 | 1.12e-62 | 216 |
MS.gene067778.t1 | MTR_7g085120 | 74.074 | 432 | 111 | 1 | 282 | 712 | 25 | 456 | 0.0 | 655 |
MS.gene067778.t1 | MTR_7g085120 | 77.922 | 154 | 34 | 0 | 16 | 169 | 17 | 170 | 2.19e-78 | 258 |
MS.gene067778.t1 | MTR_7g085120 | 46.296 | 162 | 44 | 2 | 166 | 284 | 277 | 438 | 1.01e-34 | 138 |
MS.gene067778.t1 | MTR_7g085150 | 73.041 | 434 | 114 | 3 | 282 | 712 | 45 | 478 | 0.0 | 641 |
MS.gene067778.t1 | MTR_7g085150 | 78.235 | 170 | 35 | 2 | 1 | 169 | 23 | 191 | 3.68e-84 | 274 |
MS.gene067778.t1 | MTR_7g085150 | 44.172 | 163 | 47 | 3 | 166 | 284 | 298 | 460 | 8.96e-33 | 132 |
MS.gene067778.t1 | MTR_7g085200 | 67.277 | 437 | 143 | 0 | 276 | 712 | 18 | 454 | 0.0 | 608 |
MS.gene067778.t1 | MTR_7g085200 | 74.556 | 169 | 43 | 0 | 1 | 169 | 1 | 169 | 3.98e-80 | 263 |
MS.gene067778.t1 | MTR_7g085200 | 35.160 | 219 | 78 | 3 | 114 | 286 | 238 | 438 | 6.84e-33 | 132 |
MS.gene067778.t1 | MTR_7g085200 | 67.123 | 438 | 142 | 1 | 276 | 711 | 18 | 455 | 0.0 | 603 |
MS.gene067778.t1 | MTR_7g085200 | 73.684 | 171 | 43 | 1 | 1 | 169 | 1 | 171 | 3.34e-78 | 258 |
MS.gene067778.t1 | MTR_7g085200 | 35.160 | 219 | 78 | 3 | 114 | 286 | 240 | 440 | 7.11e-33 | 132 |
MS.gene067778.t1 | MTR_7g085150 | 72.938 | 388 | 102 | 3 | 282 | 666 | 45 | 432 | 0.0 | 568 |
MS.gene067778.t1 | MTR_7g085150 | 78.235 | 170 | 35 | 2 | 1 | 169 | 23 | 191 | 1.77e-84 | 274 |
MS.gene067778.t1 | MTR_7g085150 | 38.519 | 135 | 39 | 3 | 166 | 256 | 298 | 432 | 2.95e-18 | 88.6 |
MS.gene067778.t1 | MTR_4g036220 | 66.282 | 433 | 111 | 4 | 282 | 712 | 34 | 433 | 0.0 | 558 |
MS.gene067778.t1 | MTR_4g036220 | 68.235 | 170 | 33 | 3 | 1 | 169 | 12 | 161 | 4.18e-67 | 228 |
MS.gene067778.t1 | MTR_4g036220 | 46.707 | 167 | 44 | 3 | 163 | 284 | 249 | 415 | 5.57e-36 | 141 |
MS.gene067778.t1 | MTR_7g085090 | 56.667 | 420 | 179 | 2 | 283 | 701 | 49 | 466 | 5.12e-167 | 488 |
MS.gene067778.t1 | MTR_7g085090 | 58.896 | 163 | 67 | 0 | 7 | 169 | 31 | 193 | 1.35e-58 | 206 |
MS.gene067778.t1 | MTR_7g085090 | 49.474 | 95 | 48 | 0 | 192 | 286 | 367 | 461 | 2.41e-26 | 113 |
MS.gene067778.t1 | MTR_6g033000 | 53.957 | 417 | 191 | 1 | 287 | 702 | 66 | 482 | 1.15e-152 | 452 |
MS.gene067778.t1 | MTR_6g033000 | 54.777 | 157 | 71 | 0 | 13 | 169 | 50 | 206 | 5.96e-50 | 182 |
MS.gene067778.t1 | MTR_6g033000 | 48.421 | 95 | 49 | 0 | 192 | 286 | 382 | 476 | 7.93e-25 | 108 |
MS.gene067778.t1 | MTR_7g085160 | 75.843 | 178 | 32 | 2 | 535 | 712 | 53 | 219 | 4.54e-78 | 249 |
MS.gene067778.t1 | MTR_7g085160 | 64.286 | 154 | 16 | 1 | 169 | 283 | 55 | 208 | 1.45e-57 | 195 |
MS.gene067778.t1 | MTR_5g040710 | 30.435 | 299 | 171 | 10 | 302 | 576 | 79 | 364 | 7.29e-33 | 134 |
MS.gene067778.t1 | MTR_5g040710 | 34.270 | 178 | 90 | 7 | 1 | 170 | 45 | 203 | 5.44e-18 | 88.6 |
MS.gene067778.t1 | MTR_8g072360 | 32.990 | 194 | 108 | 4 | 292 | 463 | 92 | 285 | 4.37e-20 | 95.5 |
MS.gene067778.t1 | MTR_8g072360 | 30.921 | 152 | 84 | 3 | 38 | 168 | 96 | 247 | 1.53e-11 | 68.2 |
MS.gene067778.t1 | MTR_4g105480 | 21.564 | 473 | 271 | 16 | 295 | 696 | 45 | 488 | 2.36e-18 | 89.7 |
MS.gene067778.t1 | MTR_4g105480 | 26.512 | 215 | 120 | 6 | 7 | 197 | 28 | 228 | 7.81e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067778.t1 | AT5G18280 | 52.657 | 414 | 195 | 1 | 289 | 701 | 58 | 471 | 1.22e-150 | 446 |
MS.gene067778.t1 | AT5G18280 | 56.115 | 139 | 61 | 0 | 31 | 169 | 58 | 196 | 2.35e-42 | 160 |
MS.gene067778.t1 | AT5G18280 | 32.298 | 161 | 66 | 1 | 169 | 286 | 306 | 466 | 6.02e-24 | 106 |
MS.gene067778.t1 | AT3G04080 | 52.488 | 402 | 190 | 1 | 301 | 701 | 69 | 470 | 5.92e-145 | 432 |
MS.gene067778.t1 | AT3G04080 | 50.000 | 154 | 77 | 0 | 16 | 169 | 42 | 195 | 2.45e-41 | 157 |
MS.gene067778.t1 | AT3G04080 | 45.192 | 104 | 53 | 1 | 183 | 286 | 366 | 465 | 3.40e-23 | 103 |
MS.gene067778.t1 | AT1G14240 | 28.604 | 437 | 264 | 12 | 284 | 699 | 53 | 462 | 2.66e-41 | 157 |
MS.gene067778.t1 | AT1G14240 | 37.984 | 129 | 77 | 2 | 44 | 170 | 70 | 197 | 1.02e-17 | 87.4 |
MS.gene067778.t1 | AT1G14240 | 28.604 | 437 | 264 | 12 | 284 | 699 | 53 | 462 | 2.66e-41 | 157 |
MS.gene067778.t1 | AT1G14240 | 37.984 | 129 | 77 | 2 | 44 | 170 | 70 | 197 | 1.02e-17 | 87.4 |
MS.gene067778.t1 | AT1G14240 | 28.604 | 437 | 264 | 12 | 284 | 699 | 53 | 462 | 2.66e-41 | 157 |
MS.gene067778.t1 | AT1G14240 | 37.984 | 129 | 77 | 2 | 44 | 170 | 70 | 197 | 1.02e-17 | 87.4 |
MS.gene067778.t1 | AT1G14250 | 27.273 | 440 | 268 | 13 | 284 | 699 | 55 | 466 | 1.39e-40 | 155 |
MS.gene067778.t1 | AT1G14250 | 41.085 | 129 | 73 | 2 | 44 | 170 | 71 | 198 | 2.48e-19 | 92.4 |
MS.gene067778.t1 | AT1G14230 | 28.103 | 427 | 245 | 11 | 302 | 699 | 81 | 474 | 2.28e-40 | 155 |
MS.gene067778.t1 | AT1G14230 | 39.535 | 129 | 75 | 2 | 44 | 170 | 81 | 208 | 1.09e-16 | 84.0 |
MS.gene067778.t1 | AT1G14240 | 28.146 | 437 | 262 | 13 | 284 | 699 | 53 | 458 | 6.46e-38 | 148 |
MS.gene067778.t1 | AT1G14240 | 37.903 | 124 | 74 | 2 | 44 | 165 | 70 | 192 | 6.80e-16 | 81.6 |
MS.gene067778.t1 | AT2G02970 | 28.132 | 423 | 252 | 14 | 302 | 697 | 87 | 484 | 1.71e-36 | 145 |
MS.gene067778.t1 | AT2G02970 | 39.535 | 129 | 75 | 2 | 44 | 170 | 87 | 214 | 8.82e-17 | 84.7 |
MS.gene067778.t1 | AT4G19180 | 25.588 | 340 | 191 | 12 | 253 | 536 | 68 | 401 | 1.38e-16 | 84.3 |
MS.gene067778.t1 | AT4G19180 | 25.588 | 340 | 191 | 12 | 253 | 536 | 68 | 401 | 1.38e-16 | 84.3 |
MS.gene067778.t1 | AT4G19180 | 25.588 | 340 | 191 | 12 | 253 | 536 | 68 | 401 | 1.38e-16 | 84.3 |
Find 165 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACTATGTATTGGGGAATT+TGG | 0.093358 | 7.1:-19864104 | MS.gene067778:CDS |
CCCAAGCCTAAGGGGTGTTT+TGG | 0.171551 | 7.1:+19866417 | None:intergenic |
TCCTCTCCATCTGCAACTTT+TGG | 0.191761 | 7.1:+19863986 | None:intergenic |
AGCATGGAATTAGGTTTATT+TGG | 0.205910 | 7.1:+19867900 | None:intergenic |
AGTATGGAATTAGGTTTATT+TGG | 0.217073 | 7.1:+19862639 | None:intergenic |
TGCAGGCAACCGCGGGTTTA+AGG | 0.218539 | 7.1:-19869583 | MS.gene067778:intron |
AAAATCTCTCATTCCACTTT+TGG | 0.222729 | 7.1:-19866476 | MS.gene067778:CDS |
AGCACAAGCTTCTTAATATA+TGG | 0.233885 | 7.1:+19863962 | None:intergenic |
AACTATGTATTGGGGAATTT+GGG | 0.257906 | 7.1:-19864103 | MS.gene067778:CDS |
ACTGGATGAAGCATGGAATT+AGG | 0.266923 | 7.1:+19867891 | None:intergenic |
CCCACATATAAGAACCTTCT+TGG | 0.273411 | 7.1:+19864308 | None:intergenic |
CCCACATATAAGAACCTTCT+TGG | 0.273411 | 7.1:+19869347 | None:intergenic |
ACTGGATGAAGTATGGAATT+AGG | 0.275392 | 7.1:+19862630 | None:intergenic |
CCCAAGCCTAAGGGGTGTTT+TGG | 0.282023 | 7.1:+19872008 | None:intergenic |
CCCTATCCGAGTTGCACTTT+TGG | 0.286988 | 7.1:-19862855 | MS.gene067778:CDS |
GAGGTTAGGGCTTCTTGTTT+TGG | 0.293335 | 7.1:+19872335 | None:intergenic |
AAAGGGACCTTTACATATTC+AGG | 0.293841 | 7.1:-19862972 | MS.gene067778:intron |
AAACTTAGGTAACGCTGATA+TGG | 0.305974 | 7.1:+19862079 | None:intergenic |
TGGAATGGTGGAGGAGGGAG+TGG | 0.310304 | 7.1:-19862825 | MS.gene067778:CDS |
CAACATGTGTTGCTCGTTCA+TGG | 0.310629 | 7.1:-19862492 | MS.gene067778:CDS |
CAACATGTGTTGCTCGTTCA+TGG | 0.311386 | 7.1:-19867753 | MS.gene067778:CDS |
AAAATCTACTGGATGAAGTA+TGG | 0.311449 | 7.1:+19862623 | None:intergenic |
GTGACAGTTAACTATGTATT+GGG | 0.320917 | 7.1:-19864112 | MS.gene067778:CDS |
CTCCGTAAGACGAGGATAAA+TGG | 0.342782 | 7.1:+19867812 | None:intergenic |
ATATTCAGGAGTGGAGTATA+AGG | 0.350913 | 7.1:-19862958 | MS.gene067778:CDS |
ATATTCAGGAGTGGAGTATA+AGG | 0.350913 | 7.1:-19868222 | MS.gene067778:intron |
AACCGCGGGTTTAAGGCTTT+TGG | 0.352299 | 7.1:-19869576 | MS.gene067778:CDS |
AATATGATCTCTATGTTCAT+AGG | 0.360539 | 7.1:-19863928 | MS.gene067778:intron |
TTGCAAAGAAATAATTCTTA+AGG | 0.362668 | 7.1:-19862901 | MS.gene067778:CDS |
TTGCAAAGAAATAATTCTTA+AGG | 0.362668 | 7.1:-19868165 | MS.gene067778:intron |
GATGCAGTTTCTATTATTGA+TGG | 0.366866 | 7.1:-19864334 | MS.gene067778:CDS |
GATGCAGTTTCAATTATAGA+TGG | 0.368431 | 7.1:-19869373 | MS.gene067778:CDS |
TGTGAAGTAGATCTAAGTTT+TGG | 0.369352 | 7.1:+19866704 | None:intergenic |
CCAAAACACCCCTTAGGCTT+GGG | 0.374595 | 7.1:-19866417 | MS.gene067778:CDS |
ATATGACAACATACGAGGTT+AGG | 0.374979 | 7.1:+19872321 | None:intergenic |
GCTTCAATTTCAAAATCTAC+TGG | 0.378157 | 7.1:+19862612 | None:intergenic |
TACTTCAGCTTTCGCTTACC+TGG | 0.385501 | 7.1:-19862784 | MS.gene067778:CDS |
CCAAAACACCCCTTAGGCTT+GGG | 0.387043 | 7.1:-19872008 | MS.gene067778:CDS |
GCTTCAATTTCGAAATCTAC+TGG | 0.387215 | 7.1:+19867873 | None:intergenic |
GATCTAAGTTCTGATCAAAA+TGG | 0.389966 | 7.1:+19872261 | None:intergenic |
TACATTAATCGCTTAAACTT+AGG | 0.392460 | 7.1:+19862065 | None:intergenic |
TATGACAGCGTAAGAGGTTA+AGG | 0.393565 | 7.1:+19866774 | None:intergenic |
CTCTCTTCCTCCCAATATCT+TGG | 0.395649 | 7.1:-19872389 | MS.gene067778:CDS |
TTCTTTGCAATCATCAAAGT+TGG | 0.402098 | 7.1:+19862914 | None:intergenic |
TTCTTTGCAATCATCAAAGT+TGG | 0.402098 | 7.1:+19868178 | None:intergenic |
ATCAAATATGACAGCGTAAG+AGG | 0.408728 | 7.1:+19866768 | None:intergenic |
TCTTGTAGTTACTTGCGCTT+TGG | 0.424535 | 7.1:-19863788 | MS.gene067778:intron |
GGTGACAGTTAACTATGTAT+TGG | 0.433794 | 7.1:-19864113 | MS.gene067778:CDS |
ATCCATTTATCCTCGTCTTA+CGG | 0.437580 | 7.1:-19867814 | MS.gene067778:CDS |
CCCAAAACACCCCTTAGGCT+TGG | 0.438369 | 7.1:-19866418 | MS.gene067778:CDS |
GTGTTGCTCGTTCATGGATT+TGG | 0.442498 | 7.1:-19862486 | MS.gene067778:intron |
GTGTTGCTCGTTCATGGATT+TGG | 0.442498 | 7.1:-19867747 | MS.gene067778:intron |
CCACATATAAGAACCTTCTT+GGG | 0.448076 | 7.1:+19864309 | None:intergenic |
AGCTTGTGCATTAAACTTTG+AGG | 0.451748 | 7.1:-19862583 | MS.gene067778:CDS |
AGCTTGTGCATTAAACTTTG+AGG | 0.451748 | 7.1:-19867844 | MS.gene067778:CDS |
CCCAAGAAGGTTCTTATATG+TGG | 0.452789 | 7.1:-19864309 | MS.gene067778:CDS |
AAGAGATCCATGCATACATA+TGG | 0.456674 | 7.1:+19862519 | None:intergenic |
AAGAGATCCATGCATACATA+TGG | 0.457084 | 7.1:+19867780 | None:intergenic |
ATTATAGATGGAACCCAAGA+AGG | 0.461015 | 7.1:-19869361 | MS.gene067778:intron |
TATTGGGAGGAAGAGAGAGC+AGG | 0.461825 | 7.1:+19872395 | None:intergenic |
ATTATTGATGGAACCCAAGA+AGG | 0.464764 | 7.1:-19864322 | MS.gene067778:CDS |
GTGGAAGCTGCATGGCCTCT+AGG | 0.467397 | 7.1:-19862116 | MS.gene067778:CDS |
GTGGAAGCTGCATGGCCTCT+AGG | 0.468068 | 7.1:-19867529 | MS.gene067778:intron |
ACGAGAAATTACAGTGGGGC+AGG | 0.473748 | 7.1:-19867575 | MS.gene067778:CDS |
TCCAAAACACCCCTTAGGCT+TGG | 0.473783 | 7.1:-19872009 | MS.gene067778:CDS |
CCACATATAAGAACCTTCTT+GGG | 0.475690 | 7.1:+19869348 | None:intergenic |
AAAACTTTCGATTAGTGAGT+AGG | 0.480626 | 7.1:+19866812 | None:intergenic |
GGAATATGGAATGGTGGAGG+AGG | 0.482405 | 7.1:-19862831 | MS.gene067778:CDS |
TGCAGGCAACCGCAGGTTTG+AGG | 0.484016 | 7.1:-19864546 | MS.gene067778:intron |
GAAAACTCACCCCAAGCCTA+AGG | 0.486209 | 7.1:+19866407 | None:intergenic |
AAACCAGGTTTGAGTGCGTA+TGG | 0.488828 | 7.1:-19866520 | MS.gene067778:CDS |
TACGCTGTCATATTTGATGC+TGG | 0.490658 | 7.1:-19866763 | MS.gene067778:CDS |
TCAAAGTTGGAGCCAGAAGA+AGG | 0.491011 | 7.1:+19862927 | None:intergenic |
TCAAAGTTGGAGCCAGAAGA+AGG | 0.491011 | 7.1:+19868191 | None:intergenic |
TCTTCTGCTTCCTCCAAAAG+TGG | 0.496021 | 7.1:+19866463 | None:intergenic |
TAAATATTACCATTAAATCC+AGG | 0.499439 | 7.1:+19863701 | None:intergenic |
TATTAAGAAGCTTGTGCTCA+AGG | 0.501262 | 7.1:-19863957 | MS.gene067778:CDS |
TATGACAACATACGAGGTTA+GGG | 0.506011 | 7.1:+19872322 | None:intergenic |
AAAACTCACCCCAAGCCTAA+GGG | 0.507438 | 7.1:+19871999 | None:intergenic |
CTCTCTGCTTCTTCTAGAAG+TGG | 0.508455 | 7.1:+19872054 | None:intergenic |
TCCGCGTATGCACTCAAACC+TGG | 0.513693 | 7.1:+19872108 | None:intergenic |
TGCATCACGTTGAACGTTGA+GGG | 0.516798 | 7.1:+19864351 | None:intergenic |
ATATTTGATGCTGGTAGCAC+TGG | 0.520451 | 7.1:-19866754 | MS.gene067778:CDS |
ATATTTGATGCTGGTAGCAC+TGG | 0.520451 | 7.1:-19872302 | MS.gene067778:CDS |
GAATATGGAATGGTGGAGGA+GGG | 0.520495 | 7.1:-19862830 | MS.gene067778:CDS |
CAAAGAAGCAACTCGAGCAC+AGG | 0.521520 | 7.1:-19863765 | MS.gene067778:CDS |
TCCCCATACGCACTCAAACC+TGG | 0.522924 | 7.1:+19866517 | None:intergenic |
GGAGTAATTGACCTTGGAGG+TGG | 0.525763 | 7.1:-19864058 | MS.gene067778:CDS |
CTCTGTAAGACGTGGATAAG+TGG | 0.526420 | 7.1:+19862551 | None:intergenic |
GAAATGTGATGAGTGTGGTT+AGG | 0.529722 | 7.1:+19872432 | None:intergenic |
CAAAGTTGGAGCCAGAAGAA+GGG | 0.531298 | 7.1:+19862928 | None:intergenic |
CAAAGTTGGAGCCAGAAGAA+GGG | 0.531298 | 7.1:+19868192 | None:intergenic |
AAAACTCACCCCAAGCCTAA+GGG | 0.532118 | 7.1:+19866408 | None:intergenic |
CTCCACTCCTGAATATGTAA+AGG | 0.532753 | 7.1:+19862965 | None:intergenic |
TTAAATCCAGGTAAAATGCA+AGG | 0.532782 | 7.1:+19863713 | None:intergenic |
TATGTTGTCATATTTGATGC+TGG | 0.538638 | 7.1:-19872311 | MS.gene067778:CDS |
ACCAAAAGTGCAACTCGGAT+AGG | 0.539445 | 7.1:+19862854 | None:intergenic |
CCAAAAGTGCAACTCGGATA+GGG | 0.540474 | 7.1:+19862855 | None:intergenic |
AACCAGGTTTGAGTGCGTAT+GGG | 0.542174 | 7.1:-19866519 | MS.gene067778:CDS |
ATAATAATGCAGGCAACCGC+AGG | 0.543205 | 7.1:-19864553 | MS.gene067778:intron |
TCAATATCAGAATTCTGTTG+TGG | 0.555684 | 7.1:-19862135 | MS.gene067778:CDS |
TCAATATCAGAATTCTGTTG+TGG | 0.555684 | 7.1:-19867548 | MS.gene067778:CDS |
CCCACTGTAATTTCTCGTTG+AGG | 0.560516 | 7.1:+19867580 | None:intergenic |
ATTAAGAAGCTTGTGCTCAA+GGG | 0.561023 | 7.1:-19863956 | MS.gene067778:CDS |
AATATTGATGCAGGCAACCG+CGG | 0.563655 | 7.1:-19869591 | MS.gene067778:intron |
AATGCTCCAAAAGTTGCAGA+TGG | 0.567798 | 7.1:-19863992 | MS.gene067778:CDS |
GAAATCTACTGGATGAAGCA+TGG | 0.572004 | 7.1:+19867884 | None:intergenic |
AAAGAGATTACAGTAGGTGA+GGG | 0.573833 | 7.1:-19862161 | MS.gene067778:CDS |
GTGCAACTCGGATAGGGACA+TGG | 0.575560 | 7.1:+19862861 | None:intergenic |
ATATTGATGCAGGCAACCGC+GGG | 0.575628 | 7.1:-19869590 | MS.gene067778:intron |
ACCAGGTTTGAGTGCGTATG+GGG | 0.578560 | 7.1:-19866518 | MS.gene067778:CDS |
TGATATTGAGTTTGTTGACA+AGG | 0.580220 | 7.1:-19866674 | MS.gene067778:intron |
TTTGGTCAAAATGGTAAACA+TGG | 0.580756 | 7.1:+19866722 | None:intergenic |
CTGCATCACGTTGAACGTTG+AGG | 0.583648 | 7.1:+19864350 | None:intergenic |
AAAAGAGATTACAGTAGGTG+AGG | 0.588180 | 7.1:-19862162 | MS.gene067778:CDS |
GGAATGGTGGAGGAGGGAGT+GGG | 0.590419 | 7.1:-19862824 | MS.gene067778:CDS |
TTTGGAGGAAGCAGAAGATG+TGG | 0.592449 | 7.1:-19866458 | MS.gene067778:CDS |
GTGGGAGTAATTGACCTTGG+AGG | 0.593027 | 7.1:-19864061 | MS.gene067778:CDS |
AAAGTTGGAGCCAGAAGAAG+GGG | 0.597511 | 7.1:+19862929 | None:intergenic |
AAAGTTGGAGCCAGAAGAAG+GGG | 0.597511 | 7.1:+19868193 | None:intergenic |
CCAAGAAGGTTCTTATATGT+GGG | 0.599714 | 7.1:-19864308 | MS.gene067778:intron |
CAAAACACCCCTTAGGCTTG+GGG | 0.599749 | 7.1:-19866416 | MS.gene067778:intron |
GGTGGAATATGGAATGGTGG+AGG | 0.599785 | 7.1:-19862834 | MS.gene067778:CDS |
CAAAACACCCCTTAGGCTTG+GGG | 0.601715 | 7.1:-19872007 | MS.gene067778:intron |
TCAGTGGGAGTAATTGACCT+TGG | 0.602293 | 7.1:-19864064 | MS.gene067778:CDS |
GACCTTTACATATTCAGGAG+TGG | 0.602637 | 7.1:-19862967 | MS.gene067778:CDS |
CATGAACGAGCAACACATGT+TGG | 0.602847 | 7.1:+19867754 | None:intergenic |
TCTGATCAAAATGGTAGACA+TGG | 0.603308 | 7.1:+19872270 | None:intergenic |
TGCTGAAAAGATATTGCAAG+CGG | 0.605130 | 7.1:-19869543 | MS.gene067778:intron |
AACTTAGATCTACTTCACAT+TGG | 0.606483 | 7.1:-19866700 | MS.gene067778:CDS |
CGAGAAATTACAGTGGGGCA+GGG | 0.609109 | 7.1:-19867574 | MS.gene067778:CDS |
AAAAGCTTCACAAAATCAGT+GGG | 0.611541 | 7.1:-19864079 | MS.gene067778:CDS |
TAAATCCAGGTAAAATGCAA+GGG | 0.612700 | 7.1:+19863714 | None:intergenic |
GTTGTGATGTAGATCAAACC+AGG | 0.612719 | 7.1:-19866535 | MS.gene067778:intron |
TCCAAAAGTTGCAGATGGAG+AGG | 0.615396 | 7.1:-19863987 | MS.gene067778:CDS |
CCTCAACGAGAAATTACAGT+GGG | 0.620628 | 7.1:-19867580 | MS.gene067778:CDS |
TTTGGTGGAATATGGAATGG+TGG | 0.623058 | 7.1:-19862837 | MS.gene067778:CDS |
ACCAGGTTTGAGTGCATACG+CGG | 0.623511 | 7.1:-19872109 | MS.gene067778:CDS |
AGCAGAAGATGTGGTTCCTG+AGG | 0.623737 | 7.1:-19866449 | MS.gene067778:CDS |
ATCCAAAAGCCTTAAACCCG+CGG | 0.630783 | 7.1:+19869574 | None:intergenic |
AAACTCACCCCAAGCCTAAG+GGG | 0.631016 | 7.1:+19872000 | None:intergenic |
TTTGAACTGAACCACCTCCA+AGG | 0.632699 | 7.1:+19864047 | None:intergenic |
AAACTCACCCCAAGCCTAAG+GGG | 0.632954 | 7.1:+19866409 | None:intergenic |
CAAAATGGTAGACATGGACA+CGG | 0.633528 | 7.1:+19872276 | None:intergenic |
CATTTATCCTCGTCTTACGG+AGG | 0.636034 | 7.1:-19867811 | MS.gene067778:CDS |
ATTCTGTTGTGGAAGCTGCA+TGG | 0.638309 | 7.1:-19862124 | MS.gene067778:CDS |
ATTCTGTTGTGGAAGCTGCA+TGG | 0.638309 | 7.1:-19867537 | MS.gene067778:CDS |
CCACGAAAAGAGATTACAGT+AGG | 0.642945 | 7.1:-19862167 | MS.gene067778:CDS |
TGATATTGAGTTTGTTGACA+AGG | 0.645926 | 7.1:-19872222 | MS.gene067778:intron |
TGCACCCCAAAACACCCCTT+AGG | 0.647295 | 7.1:-19866423 | MS.gene067778:CDS |
AAAACGTCCATATGTATGCA+TGG | 0.648697 | 7.1:-19862526 | MS.gene067778:CDS |
AAAACGTCCATATGTATGCA+TGG | 0.648697 | 7.1:-19867787 | MS.gene067778:CDS |
ATTCAAAAGCCTCAAACCTG+CGG | 0.651264 | 7.1:+19864537 | None:intergenic |
TGCACTCCAAAACACCCCTT+AGG | 0.653249 | 7.1:-19872014 | MS.gene067778:CDS |
CACTTATCCACGTCTTACAG+AGG | 0.653327 | 7.1:-19862550 | MS.gene067778:CDS |
ATGGCCTCTAGGCACTGCTG+TGG | 0.653909 | 7.1:-19862105 | MS.gene067778:CDS |
GAGTAGAAATGTGATGAGTG+TGG | 0.655156 | 7.1:+19872427 | None:intergenic |
ATTCCACCAAAAGTGCAACT+CGG | 0.665214 | 7.1:+19862849 | None:intergenic |
GATGTTATATAGATCAAACC+AGG | 0.666409 | 7.1:-19872126 | MS.gene067778:intron |
TGACAGTTAACTATGTATTG+GGG | 0.677718 | 7.1:-19864111 | MS.gene067778:CDS |
GCTTCCACAGCAGTGCCTAG+AGG | 0.681896 | 7.1:+19862101 | None:intergenic |
ATCAAATATGACAACATACG+AGG | 0.698857 | 7.1:+19872316 | None:intergenic |
AAAATGGTAGACATGGACAC+GGG | 0.710777 | 7.1:+19872277 | None:intergenic |
TCCTCAACGAGAAATTACAG+TGG | 0.746771 | 7.1:-19867581 | MS.gene067778:CDS |
CTCAACGAGAAATTACAGTG+GGG | 0.795665 | 7.1:-19867579 | MS.gene067778:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 19862055 | 19872462 | 19862055 | ID=MS.gene067778 |
chr7.1 | mRNA | 19862055 | 19872462 | 19862055 | ID=MS.gene067778.t1;Parent=MS.gene067778 |
chr7.1 | exon | 19872223 | 19872462 | 19872223 | ID=MS.gene067778.t1.exon1;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19872223 | 19872462 | 19872223 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19872008 | 19872136 | 19872008 | ID=MS.gene067778.t1.exon2;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19872008 | 19872136 | 19872008 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19869544 | 19869600 | 19869544 | ID=MS.gene067778.t1.exon3;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19869544 | 19869600 | 19869544 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19869362 | 19869440 | 19869362 | ID=MS.gene067778.t1.exon4;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19869362 | 19869440 | 19869362 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19868166 | 19868236 | 19868166 | ID=MS.gene067778.t1.exon5;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19868166 | 19868236 | 19868166 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19867748 | 19867937 | 19867748 | ID=MS.gene067778.t1.exon6;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19867748 | 19867937 | 19867748 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19867530 | 19867610 | 19867530 | ID=MS.gene067778.t1.exon7;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19867530 | 19867610 | 19867530 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19866675 | 19866841 | 19866675 | ID=MS.gene067778.t1.exon8;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19866675 | 19866841 | 19866675 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19866417 | 19866545 | 19866417 | ID=MS.gene067778.t1.exon9;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19866417 | 19866545 | 19866417 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19864507 | 19864563 | 19864507 | ID=MS.gene067778.t1.exon10;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19864507 | 19864563 | 19864507 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19864309 | 19864401 | 19864309 | ID=MS.gene067778.t1.exon11;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19864309 | 19864401 | 19864309 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19863929 | 19864134 | 19863929 | ID=MS.gene067778.t1.exon12;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19863929 | 19864134 | 19863929 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19863711 | 19863802 | 19863711 | ID=MS.gene067778.t1.exon13;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19863711 | 19863802 | 19863711 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19862776 | 19862990 | 19862776 | ID=MS.gene067778.t1.exon14;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19862776 | 19862990 | 19862776 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19862487 | 19862676 | 19862487 | ID=MS.gene067778.t1.exon15;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19862487 | 19862676 | 19862487 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
chr7.1 | exon | 19862055 | 19862197 | 19862055 | ID=MS.gene067778.t1.exon16;Parent=MS.gene067778.t1 |
chr7.1 | CDS | 19862055 | 19862197 | 19862055 | ID=cds.MS.gene067778.t1;Parent=MS.gene067778.t1 |
Gene Sequence |
Protein sequence |