Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068336.t1 | XP_013444640.2 | 94.7 | 319 | 17 | 0 | 1 | 319 | 1 | 319 | 7.40E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068336.t1 | Q9M365 | 61.0 | 292 | 114 | 0 | 28 | 319 | 68 | 359 | 9.4e-106 | 384.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068336.t1 | A0A1S2YVP8 | 87.8 | 320 | 38 | 1 | 1 | 319 | 1 | 320 | 2.6e-165 | 590.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05265 | MS.gene068336 | 0.801858 | 7.38E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068336.t1 | MTR_8g027735 | 94.539 | 293 | 16 | 0 | 1 | 293 | 1 | 293 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068336.t1 | AT3G61730 | 60.544 | 294 | 116 | 0 | 26 | 319 | 66 | 359 | 1.32e-134 | 386 |
| MS.gene068336.t1 | AT5G36000 | 57.483 | 294 | 125 | 0 | 26 | 319 | 62 | 355 | 8.47e-128 | 369 |
| MS.gene068336.t1 | AT3G62500 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 1.43e-42 | 151 |
| MS.gene068336.t1 | AT3G62500 | 47.929 | 169 | 67 | 3 | 129 | 297 | 178 | 325 | 1.54e-42 | 151 |
Find 84 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8.3:-66341352 | MS.gene068336:CDS |
| GACTGAGATAGCAAAGTTTC+TGG | 0.178170 | 8.3:-66342314 | MS.gene068336:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8.3:-66340954 | MS.gene068336:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8.3:-66342240 | MS.gene068336:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8.3:-66340900 | MS.gene068336:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8.3:-66342154 | MS.gene068336:intron |
| GAAGGTTCGATGACGACATT+TGG | 0.372412 | 8.3:-66342336 | MS.gene068336:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8.3:+66341318 | None:intergenic |
| ACTAATTTACAAGAAAATAA+AGG | 0.390325 | 8.3:-66340324 | MS.gene068336:intron |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8.3:-66341321 | MS.gene068336:intron |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8.3:-66341329 | MS.gene068336:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8.3:+66340362 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8.3:-66340405 | MS.gene068336:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8.3:-66340899 | MS.gene068336:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8.3:-66340389 | MS.gene068336:CDS |
| CCGATCATTCCACTTTCTCA+TGG | 0.422415 | 8.3:-66343221 | MS.gene068336:intron |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8.3:-66340947 | MS.gene068336:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8.3:-66342254 | MS.gene068336:CDS |
| CTCCTGCTGTCGGAACTTGT+AGG | 0.455095 | 8.3:+66342032 | None:intergenic |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8.3:+66342181 | None:intergenic |
| CTTCGCCGGTGGCAGTTCTC+CGG | 0.464227 | 8.3:+66343302 | None:intergenic |
| GAGAGAGAACCATGAGAAAG+TGG | 0.465930 | 8.3:+66343212 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8.3:-66340404 | MS.gene068336:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8.3:-66340953 | MS.gene068336:CDS |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8.3:+66340356 | None:intergenic |
| CAGGTCCTGCCCTCATAGCT+TGG | 0.480034 | 8.3:+66339643 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8.3:-66341388 | MS.gene068336:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8.3:+66341175 | None:intergenic |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8.3:-66340891 | MS.gene068336:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8.3:-66340410 | MS.gene068336:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 8.3:+66341418 | None:intergenic |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 8.3:+66343240 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8.3:-66340846 | MS.gene068336:intron |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8.3:-66341194 | MS.gene068336:CDS |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 8.3:+66343260 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8.3:+66342187 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8.3:+66341396 | None:intergenic |
| CCATGAGAAAGTGGAATGAT+CGG | 0.511183 | 8.3:+66343221 | None:intergenic |
| CGGTGGCAGTTCTCCGGCGT+CGG | 0.514667 | 8.3:+66343308 | None:intergenic |
| ATGTGAAGTACCAAGCTATG+AGG | 0.516901 | 8.3:-66339653 | MS.gene068336:CDS |
| TGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8.3:+66343311 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8.3:-66342180 | MS.gene068336:CDS |
| CTCCTACAAGTTCCGACAGC+AGG | 0.520835 | 8.3:-66342034 | MS.gene068336:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8.3:+66342175 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8.3:+66342197 | None:intergenic |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8.3:+66341164 | None:intergenic |
| CGGAAAGTCTCTGATAATGC+TGG | 0.538739 | 8.3:-66342290 | MS.gene068336:CDS |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8.3:-66341000 | MS.gene068336:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8.3:-66340930 | MS.gene068336:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8.3:+66340363 | None:intergenic |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8.3:-66343321 | MS.gene068336:CDS |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8.3:-66341336 | MS.gene068336:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8.3:+66342257 | None:intergenic |
| TTACGTCGGATTCGCTTCGC+CGG | 0.558356 | 8.3:+66343288 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8.3:-66340992 | MS.gene068336:CDS |
| CAAGCTATGAGGGCAGGACC+TGG | 0.564190 | 8.3:-66339642 | MS.gene068336:CDS |
| CGTCGGATTCGCTTCGCCGG+TGG | 0.564375 | 8.3:+66343291 | None:intergenic |
| AAGTACCAAGCTATGAGGGC+AGG | 0.567054 | 8.3:-66339648 | MS.gene068336:CDS |
| GAGGGCTACTGAAGAATCAA+AGG | 0.570484 | 8.3:+66341440 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8.3:+66342178 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8.3:-66342191 | MS.gene068336:CDS |
| TGTGAAGTACCAAGCTATGA+GGG | 0.584398 | 8.3:-66339652 | MS.gene068336:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8.3:-66340898 | MS.gene068336:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8.3:-66341471 | MS.gene068336:intron |
| CAATGTGCTTCTCCTGCTGT+CGG | 0.593050 | 8.3:+66342022 | None:intergenic |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8.3:+66340847 | None:intergenic |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8.3:+66341176 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8.3:-66341169 | MS.gene068336:intron |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 8.3:+66341421 | None:intergenic |
| CGACAGCAGGAGAAGCACAT+TGG | 0.619455 | 8.3:-66342021 | MS.gene068336:intron |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8.3:-66341366 | MS.gene068336:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8.3:-66342273 | MS.gene068336:CDS |
| GCTATGAGGGCAGGACCTGG+TGG | 0.625432 | 8.3:-66339639 | MS.gene068336:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8.3:+66342245 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8.3:-66340400 | MS.gene068336:CDS |
| CGACGCCGGAGAACTGCCAC+CGG | 0.630367 | 8.3:-66343307 | MS.gene068336:CDS |
| ATGGAAACAACTTCTCCACC+AGG | 0.630379 | 8.3:+66339624 | None:intergenic |
| CAGCTGCTGAGAGATTCTGA+TGG | 0.636966 | 8.3:+66339605 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8.3:-66340946 | MS.gene068336:CDS |
| GAGATAGCAAAGTTTCTGGA+CGG | 0.652573 | 8.3:-66342310 | MS.gene068336:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.655055 | 8.3:+66341422 | None:intergenic |
| GAATGATCGGAGAGAAAGCG+AGG | 0.656826 | 8.3:+66343234 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8.3:-66340937 | MS.gene068336:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8.3:+66342248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAATCTTTAAATTAAA+TGG | - | chr8.3:66342502-66342521 | MS.gene068336:intron | 10.0% |
| !! | ACTAATTTACAAGAAAATAA+AGG | - | chr8.3:66342614-66342633 | MS.gene068336:intron | 15.0% |
| !!! | ATTAACATTGATTTTGAAAT+TGG | - | chr8.3:66340863-66340882 | MS.gene068336:CDS | 15.0% |
| !!! | TTAATTAAGTATTGGAAATT+TGG | + | chr8.3:66343016-66343035 | None:intergenic | 15.0% |
| !!! | TTTTCTATAACTTTTATATG+TGG | - | chr8.3:66340400-66340419 | MS.gene068336:CDS | 15.0% |
| !! | AAATAGAATGGTAAACAAAT+TGG | + | chr8.3:66342917-66342936 | None:intergenic | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | + | chr8.3:66342159-66342178 | None:intergenic | 20.0% |
| !! | GCTTGTATTGAAAAATAAAA+TGG | + | chr8.3:66343257-66343276 | None:intergenic | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | - | chr8.3:66341456-66341475 | MS.gene068336:CDS | 20.0% |
| !! | TATGTGGAAATAATCAATTA+AGG | - | chr8.3:66340416-66340435 | MS.gene068336:intron | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | - | chr8.3:66341052-66341071 | MS.gene068336:intron | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | - | chr8.3:66341053-66341072 | MS.gene068336:intron | 20.0% |
| !!! | TTTTACTGATTTGTTTGTTT+TGG | + | chr8.3:66342758-66342777 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTCAATACAAGC+AGG | - | chr8.3:66343257-66343276 | MS.gene068336:CDS | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | + | chr8.3:66342341-66342360 | None:intergenic | 20.0% |
| ! | AGAGTAGAAACATATATACA+TGG | - | chr8.3:66342241-66342260 | MS.gene068336:CDS | 25.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | - | chr8.3:66342508-66342527 | MS.gene068336:intron | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | + | chr8.3:66341649-66341668 | None:intergenic | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | + | chr8.3:66341348-66341367 | None:intergenic | 25.0% |
| ! | TATCCAAAAGAAGAAGATTT+GGG | + | chr8.3:66343110-66343129 | None:intergenic | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | + | chr8.3:66340969-66340988 | None:intergenic | 25.0% |
| ! | TGTGGAGTTTAATTAAGTAT+TGG | + | chr8.3:66343024-66343043 | None:intergenic | 25.0% |
| ! | TTATCCAAAAGAAGAAGATT+TGG | + | chr8.3:66343111-66343130 | None:intergenic | 25.0% |
| ! | TTGAAATTGGAATTTCAGAT+GGG | - | chr8.3:66340876-66340895 | MS.gene068336:CDS | 25.0% |
| ! | TTTGTACTTATTCTTATAGC+AGG | + | chr8.3:66342699-66342718 | None:intergenic | 25.0% |
| !! | AAATTTGGAACAGTTAGTTT+GGG | + | chr8.3:66343001-66343020 | None:intergenic | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | + | chr8.3:66341241-66341260 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | + | chr8.3:66341829-66341848 | None:intergenic | 25.0% |
| !! | GGAAATTCAGTTTGAATTTT+CGG | - | chr8.3:66339877-66339896 | MS.gene068336:intron | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | + | chr8.3:66341828-66341847 | None:intergenic | 25.0% |
| !! | TTTGAAATTGGAATTTCAGA+TGG | - | chr8.3:66340875-66340894 | MS.gene068336:CDS | 25.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | - | chr8.3:66340143-66340162 | MS.gene068336:intron | 25.0% |
| AACCACTGATGAATTATTCA+TGG | + | chr8.3:66341837-66341856 | None:intergenic | 30.0% | |
| AAGGGATATACAAAACTCAT+TGG | + | chr8.3:66341810-66341829 | None:intergenic | 30.0% | |
| AATGAATGTATAGATAGTCC+AGG | - | chr8.3:66342320-66342339 | MS.gene068336:CDS | 30.0% | |
| AATGACATGACATTAGATTG+TGG | + | chr8.3:66342194-66342213 | None:intergenic | 30.0% | |
| AATGGTAAACAAATTGGATG+GGG | + | chr8.3:66342911-66342930 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | - | chr8.3:66342457-66342476 | MS.gene068336:intron | 30.0% | |
| AGAATGGTAAACAAATTGGA+TGG | + | chr8.3:66342913-66342932 | None:intergenic | 30.0% | |
| AGAGAATGTTATTCAGGTAT+TGG | + | chr8.3:66342976-66342995 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | - | chr8.3:66342039-66342058 | MS.gene068336:CDS | 30.0% | |
| ATGAAATGAAAAAGCTGCAA+CGG | - | chr8.3:66340169-66340188 | MS.gene068336:intron | 30.0% | |
| CAATAACTCTTGTCAATCTA+AGG | + | chr8.3:66341173-66341192 | None:intergenic | 30.0% | |
| CAGTTATGGAAATGAATTTG+AGG | - | chr8.3:66341013-66341032 | MS.gene068336:intron | 30.0% | |
| CATTGTCAGATCTTGATTTA+GGG | + | chr8.3:66341200-66341219 | None:intergenic | 30.0% | |
| CTGACAATGATATATGTACA+TGG | - | chr8.3:66341211-66341230 | MS.gene068336:intron | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | + | chr8.3:66342457-66342476 | None:intergenic | 30.0% | |
| GAATCAATTGTTGTAGCATA+GGG | + | chr8.3:66342785-66342804 | None:intergenic | 30.0% | |
| GAATGGTAAACAAATTGGAT+GGG | + | chr8.3:66342912-66342931 | None:intergenic | 30.0% | |
| GACTCAATAACAATCTGTAT+TGG | + | chr8.3:66342811-66342830 | None:intergenic | 30.0% | |
| GTTAAAGAAAGAAGAAAGCA+TGG | - | chr8.3:66341550-66341569 | MS.gene068336:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | + | chr8.3:66342452-66342471 | None:intergenic | 30.0% | |
| TCAATGGTTGGATAAATTCT+AGG | + | chr8.3:66341332-66341351 | None:intergenic | 30.0% | |
| TCATTGTCAGATCTTGATTT+AGG | + | chr8.3:66341201-66341220 | None:intergenic | 30.0% | |
| TGAATCAATTGTTGTAGCAT+AGG | + | chr8.3:66342786-66342805 | None:intergenic | 30.0% | |
| TTAATCCGAATGCTTAATGA+AGG | - | chr8.3:66340584-66340603 | MS.gene068336:intron | 30.0% | |
| TTACTTCAGTAATTGAGTCA+GGG | + | chr8.3:66342665-66342684 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | + | chr8.3:66342453-66342472 | None:intergenic | 30.0% | |
| TTATGGAAATGAATTTGAGG+TGG | - | chr8.3:66341016-66341035 | MS.gene068336:intron | 30.0% | |
| TTCATTTCTAAGCTTCAGAT+CGG | - | chr8.3:66339856-66339875 | MS.gene068336:intron | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | - | chr8.3:66342534-66342553 | MS.gene068336:intron | 30.0% | |
| TTTACTTCAGTAATTGAGTC+AGG | + | chr8.3:66342666-66342685 | None:intergenic | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | - | chr8.3:66342533-66342552 | MS.gene068336:intron | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | + | chr8.3:66341777-66341796 | None:intergenic | 30.0% |
| ! | CTTTTTACCAGTTTCAGTTA+AGG | - | chr8.3:66342272-66342291 | MS.gene068336:CDS | 30.0% |
| ! | GAAATTTGGAACAGTTAGTT+TGG | + | chr8.3:66343002-66343021 | None:intergenic | 30.0% |
| ! | TGAATTAGCTTGAATAGTTG+TGG | + | chr8.3:66343042-66343061 | None:intergenic | 30.0% |
| !! | ATTCAGGTATTGGAATAGAA+GGG | + | chr8.3:66342966-66342985 | None:intergenic | 30.0% |
| !! | GATAAAAAGCATTAACTGTG+CGG | + | chr8.3:66341049-66341068 | None:intergenic | 30.0% |
| !! | TATTCAGGTATTGGAATAGA+AGG | + | chr8.3:66342967-66342986 | None:intergenic | 30.0% |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | - | chr8.3:66340065-66340084 | MS.gene068336:intron | 30.0% |
| !!! | GATTTGTTTGTTTTGGTAAC+TGG | + | chr8.3:66342751-66342770 | None:intergenic | 30.0% |
| ACAACATTAAACCTGGAATC+TGG | - | chr8.3:66341609-66341628 | MS.gene068336:intron | 35.0% | |
| AGAATGAATCAGTCAATGGT+TGG | + | chr8.3:66341344-66341363 | None:intergenic | 35.0% | |
| AGTTCCTTCATCTGTTATTG+CGG | - | chr8.3:66342866-66342885 | MS.gene068336:intron | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | - | chr8.3:66340999-66341018 | MS.gene068336:intron | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | + | chr8.3:66342579-66342598 | None:intergenic | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | - | chr8.3:66341832-66341851 | MS.gene068336:intron | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | + | chr8.3:66342075-66342094 | None:intergenic | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | - | chr8.3:66341921-66341940 | MS.gene068336:intron | 35.0% | |
| CGGTATTTGATTACAAGTCA+TGG | - | chr8.3:66342528-66342547 | MS.gene068336:intron | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | - | chr8.3:66340698-66340717 | MS.gene068336:intron | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | - | chr8.3:66341572-66341591 | MS.gene068336:intron | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | - | chr8.3:66342038-66342057 | MS.gene068336:CDS | 35.0% | |
| GGGTTTGCGTTAGAATAATA+AGG | - | chr8.3:66341874-66341893 | MS.gene068336:intron | 35.0% | |
| TACATGCTTATCTCAGTTGA+TGG | + | chr8.3:66343065-66343084 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | - | chr8.3:66341938-66341957 | MS.gene068336:intron | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | - | chr8.3:66342040-66342059 | MS.gene068336:CDS | 35.0% | |
| TATTGGAATAGAAGGGAAGT+TGG | + | chr8.3:66342959-66342978 | None:intergenic | 35.0% | |
| TCGAACCTTCATTAAGCATT+CGG | + | chr8.3:66340592-66340611 | None:intergenic | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | - | chr8.3:66341985-66342004 | MS.gene068336:intron | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | + | chr8.3:66342578-66342597 | None:intergenic | 35.0% | |
| TGCATATTCATGAACATCGA+TGG | + | chr8.3:66340830-66340849 | None:intergenic | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | + | chr8.3:66341933-66341952 | None:intergenic | 35.0% | |
| TGGGAAAGAGAATGTTATTC+AGG | + | chr8.3:66342982-66343001 | None:intergenic | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | + | chr8.3:66341009-66341028 | None:intergenic | 35.0% | |
| TTGAGGTTGGACAAATAGAA+TGG | + | chr8.3:66342929-66342948 | None:intergenic | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | - | chr8.3:66341602-66341621 | MS.gene068336:intron | 35.0% | |
| ! | AAAAGATTGATGACTCACAC+AGG | + | chr8.3:66341111-66341130 | None:intergenic | 35.0% |
| ! | AGTCCCAAATCTTCTTCTTT+TGG | - | chr8.3:66343104-66343123 | MS.gene068336:intron | 35.0% |
| ! | CATTTTTGATGTGAAACACC+TGG | - | chr8.3:66342073-66342092 | MS.gene068336:intron | 35.0% |
| ! | GTTACTGTTTTGTACTGCAA+GGG | - | chr8.3:66341854-66341873 | MS.gene068336:intron | 35.0% |
| AAGACTACGAAAATGGGAAC+TGG | - | chr8.3:66341991-66342010 | MS.gene068336:intron | 40.0% | |
| AGAACCGCAATAACAGATGA+AGG | + | chr8.3:66342873-66342892 | None:intergenic | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | - | chr8.3:66341992-66342011 | MS.gene068336:intron | 40.0% | |
| AGTTGGACATCAATTGAGGT+TGG | + | chr8.3:66342942-66342961 | None:intergenic | 40.0% | |
| ATGAAGGAACTTGTCCTTCT+TGG | + | chr8.3:66342857-66342876 | None:intergenic | 40.0% | |
| CCATGAGAAAGTGGAATGAT+CGG | + | chr8.3:66339720-66339739 | None:intergenic | 40.0% | |
| CTCCGAATGATTCTTGGTTT+GGG | - | chr8.3:66342373-66342392 | MS.gene068336:intron | 40.0% | |
| CTCTGTGAAGACTACGAAAA+TGG | - | chr8.3:66341984-66342003 | MS.gene068336:intron | 40.0% | |
| GAAAATTCAGTCTCTCTGTC+AGG | + | chr8.3:66341523-66341542 | None:intergenic | 40.0% | |
| GACTGAGATAGCAAAGTTTC+TGG | - | chr8.3:66340624-66340643 | MS.gene068336:intron | 40.0% | |
| GGATTGGGAAGGATAATTAC+TGG | - | chr8.3:66342549-66342568 | MS.gene068336:intron | 40.0% | |
| GGTAACTGGTTAATATGCAG+CGG | + | chr8.3:66342737-66342756 | None:intergenic | 40.0% | |
| GTAACTGGTTAATATGCAGC+GGG | + | chr8.3:66342736-66342755 | None:intergenic | 40.0% | |
| GTCAACTTAACAACAGTCAG+TGG | - | chr8.3:66342133-66342152 | MS.gene068336:intron | 40.0% | |
| TAGCATCATCCATGATAGCA+CGG | + | chr8.3:66340696-66340715 | None:intergenic | 40.0% | |
| TCAAATCGCACACGAAGTAA+CGG | + | chr8.3:66340007-66340026 | None:intergenic | 40.0% | |
| TCCCCAAACCAAGAATCATT+CGG | + | chr8.3:66342378-66342397 | None:intergenic | 40.0% | |
| TCTTCTTTCTTTAACTCCCC+CGG | + | chr8.3:66341545-66341564 | None:intergenic | 40.0% | |
| TGCGTAACCTTAACTGAAAC+TGG | + | chr8.3:66342282-66342301 | None:intergenic | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | + | chr8.3:66342585-66342604 | None:intergenic | 40.0% | |
| TGTGACCTCAATACTTGTGA+TGG | - | chr8.3:66341769-66341788 | MS.gene068336:intron | 40.0% | |
| TTATTGCGGTTCTGCAAAGT+CGG | - | chr8.3:66342880-66342899 | MS.gene068336:intron | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | - | chr8.3:66340784-66340803 | MS.gene068336:intron | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | - | chr8.3:66341524-66341543 | MS.gene068336:intron | 40.0% |
| ! | ATGTGAAGTACCAAGCTATG+AGG | - | chr8.3:66343285-66343304 | MS.gene068336:CDS | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | + | chr8.3:66341986-66342005 | None:intergenic | 40.0% |
| ! | GACAGAGAGACTGAATTTTC+CGG | - | chr8.3:66341523-66341542 | MS.gene068336:intron | 40.0% |
| ! | GAGATAGCAAAGTTTCTGGA+CGG | - | chr8.3:66340628-66340647 | MS.gene068336:intron | 40.0% |
| ! | GATTTGGGACTGTAGTAGAT+TGG | + | chr8.3:66343095-66343114 | None:intergenic | 40.0% |
| ! | GGTTACTGTTTTGTACTGCA+AGG | - | chr8.3:66341853-66341872 | MS.gene068336:intron | 40.0% |
| ! | TCCGAATGATTCTTGGTTTG+GGG | - | chr8.3:66342374-66342393 | MS.gene068336:intron | 40.0% |
| ! | TGTGAAGTACCAAGCTATGA+GGG | - | chr8.3:66343286-66343305 | MS.gene068336:CDS | 40.0% |
| !! | AAGTATTGAGGTCACAAACC+GGG | + | chr8.3:66341765-66341784 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | + | chr8.3:66341766-66341785 | None:intergenic | 40.0% |
| !! | TTACAAGTCATGGATTGGGA+AGG | - | chr8.3:66342538-66342557 | MS.gene068336:intron | 40.0% |
| !!! | AGCAGATGGTTTTGTTACGT+CGG | + | chr8.3:66339667-66339686 | None:intergenic | 40.0% |
| AAACCTGGAATCTGGATTGC+TGG | - | chr8.3:66341617-66341636 | MS.gene068336:intron | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | - | chr8.3:66342001-66342020 | MS.gene068336:intron | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | - | chr8.3:66342008-66342027 | MS.gene068336:intron | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | + | chr8.3:66341520-66341539 | None:intergenic | 45.0% | |
| ATGGAAACAACTTCTCCACC+AGG | + | chr8.3:66343317-66343336 | None:intergenic | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | + | chr8.3:66341519-66341538 | None:intergenic | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | - | chr8.3:66341946-66341965 | MS.gene068336:intron | 45.0% | |
| CCAAACCAAGAATCATTCGG+AGG | + | chr8.3:66342375-66342394 | None:intergenic | 45.0% | |
| CCGATCATTCCACTTTCTCA+TGG | - | chr8.3:66339717-66339736 | MS.gene068336:intron | 45.0% | |
| CCTCCGAATGATTCTTGGTT+TGG | - | chr8.3:66342372-66342391 | MS.gene068336:intron | 45.0% | |
| CTATCAGATTGGATGCGCAT+CGG | - | chr8.3:66341467-66341486 | MS.gene068336:CDS | 45.0% | |
| GAAGGTTCGATGACGACATT+TGG | - | chr8.3:66340602-66340621 | MS.gene068336:intron | 45.0% | |
| GAGAGAGAACCATGAGAAAG+TGG | + | chr8.3:66339729-66339748 | None:intergenic | 45.0% | |
| GAGGGCTACTGAAGAATCAA+AGG | + | chr8.3:66341501-66341520 | None:intergenic | 45.0% | |
| GGGAAGTTGGACATCAATTG+AGG | + | chr8.3:66342946-66342965 | None:intergenic | 45.0% | |
| TGAAGCCTCCGAATGATTCT+TGG | - | chr8.3:66342367-66342386 | MS.gene068336:intron | 45.0% | |
| TTGGGACTGTAGTAGATTGG+TGG | + | chr8.3:66343092-66343111 | None:intergenic | 45.0% | |
| ! | AGAGAGACTGAATTTTCCGG+GGG | - | chr8.3:66341526-66341545 | MS.gene068336:intron | 45.0% |
| ! | CAGAGAGACTGAATTTTCCG+GGG | - | chr8.3:66341525-66341544 | MS.gene068336:intron | 45.0% |
| ! | CGGAAAGTCTCTGATAATGC+TGG | - | chr8.3:66340648-66340667 | MS.gene068336:intron | 45.0% |
| ! | GAACATCGATGGAAGCATAG+AGG | + | chr8.3:66340819-66340838 | None:intergenic | 45.0% |
| AAGTACCAAGCTATGAGGGC+AGG | - | chr8.3:66343290-66343309 | MS.gene068336:CDS | 50.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | + | chr8.3:66339681-66339700 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGT+CGG | + | chr8.3:66340919-66340938 | None:intergenic | 50.0% | |
| CAGCTGCTGAGAGATTCTGA+TGG | + | chr8.3:66343336-66343355 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | + | chr8.3:66340693-66340712 | None:intergenic | 50.0% | |
| CTCCAGTGTGTGTACCAAGA+AGG | - | chr8.3:66342840-66342859 | MS.gene068336:intron | 50.0% | |
| CTTCTTGGTACACACACTGG+AGG | + | chr8.3:66342842-66342861 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | + | chr8.3:66339707-66339726 | None:intergenic | 50.0% | |
| GTACACACACTGGAGGCAAA+GGG | + | chr8.3:66342835-66342854 | None:intergenic | 50.0% | |
| GTACCAGCAATCCAGATTCC+AGG | + | chr8.3:66341623-66341642 | None:intergenic | 50.0% | |
| GTCCTTCTTGGTACACACAC+TGG | + | chr8.3:66342845-66342864 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | + | chr8.3:66340744-66340763 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | + | chr8.3:66340766-66340785 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | - | chr8.3:66341586-66341605 | MS.gene068336:intron | 50.0% |
| AAACGAGCTTATGGGGCTGC+TGG | - | chr8.3:66342047-66342066 | MS.gene068336:CDS | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | + | chr8.3:66340754-66340773 | None:intergenic | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | - | chr8.3:66340747-66340766 | MS.gene068336:intron | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | - | chr8.3:66340684-66340703 | MS.gene068336:intron | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | + | chr8.3:66340760-66340779 | None:intergenic | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | + | chr8.3:66342094-66342113 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | - | chr8.3:66340758-66340777 | MS.gene068336:intron | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | + | chr8.3:66340763-66340782 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGACAGC+AGG | - | chr8.3:66340904-66340923 | MS.gene068336:CDS | 55.0% | |
| CTCCTGCTGTCGGAACTTGT+AGG | + | chr8.3:66340909-66340928 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | - | chr8.3:66342092-66342111 | MS.gene068336:intron | 55.0% | |
| GGTACACACACTGGAGGCAA+AGG | + | chr8.3:66342836-66342855 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | + | chr8.3:66340684-66340703 | None:intergenic | 55.0% | |
| TTACGTCGGATTCGCTTCGC+CGG | + | chr8.3:66339653-66339672 | None:intergenic | 55.0% | |
| ! | CGACAGCAGGAGAAGCACAT+TGG | - | chr8.3:66340917-66340936 | MS.gene068336:CDS | 55.0% |
| AACGCTACTTCCTCCGACGC+CGG | - | chr8.3:66339617-66339636 | MS.gene068336:CDS | 60.0% | |
| CAAGCTATGAGGGCAGGACC+TGG | - | chr8.3:66343296-66343315 | MS.gene068336:CDS | 60.0% | |
| CAGGTCCTGCCCTCATAGCT+TGG | + | chr8.3:66343298-66343317 | None:intergenic | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | + | chr8.3:66339701-66339720 | None:intergenic | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | - | chr8.3:66341744-66341763 | MS.gene068336:intron | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | - | chr8.3:66340665-66340684 | MS.gene068336:intron | 60.0% | |
| CTTCGCCGGTGGCAGTTCTC+CGG | + | chr8.3:66339639-66339658 | None:intergenic | 65.0% | |
| GCTATGAGGGCAGGACCTGG+TGG | - | chr8.3:66343299-66343318 | MS.gene068336:CDS | 65.0% | |
| CGACGCCGGAGAACTGCCAC+CGG | - | chr8.3:66339631-66339650 | MS.gene068336:CDS | 70.0% | |
| CGGTGGCAGTTCTCCGGCGT+CGG | + | chr8.3:66339633-66339652 | None:intergenic | 70.0% | |
| CGTCGGATTCGCTTCGCCGG+TGG | + | chr8.3:66339650-66339669 | None:intergenic | 70.0% | |
| ! | TGGCAGTTCTCCGGCGTCGG+AGG | + | chr8.3:66339630-66339649 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66339599 | 66343361 | 66339599 | ID=MS.gene068336 |
| chr8.3 | mRNA | 66339599 | 66343361 | 66339599 | ID=MS.gene068336.t1;Parent=MS.gene068336 |
| chr8.3 | exon | 66343222 | 66343361 | 66343222 | ID=MS.gene068336.t1.exon1;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66343222 | 66343361 | 66343222 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66342155 | 66342354 | 66342155 | ID=MS.gene068336.t1.exon2;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66342155 | 66342354 | 66342155 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66342022 | 66342066 | 66342022 | ID=MS.gene068336.t1.exon3;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66342022 | 66342066 | 66342022 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66341322 | 66341486 | 66341322 | ID=MS.gene068336.t1.exon4;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66341322 | 66341486 | 66341322 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66341170 | 66341217 | 66341170 | ID=MS.gene068336.t1.exon5;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66341170 | 66341217 | 66341170 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66340847 | 66341017 | 66340847 | ID=MS.gene068336.t1.exon6;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66340847 | 66341017 | 66340847 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66340325 | 66340432 | 66340325 | ID=MS.gene068336.t1.exon7;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66340325 | 66340432 | 66340325 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| chr8.3 | exon | 66339599 | 66339681 | 66339599 | ID=MS.gene068336.t1.exon8;Parent=MS.gene068336.t1 |
| chr8.3 | CDS | 66339599 | 66339681 | 66339599 | ID=cds.MS.gene068336.t1;Parent=MS.gene068336.t1 |
| Gene Sequence |
| Protein sequence |
