AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068722

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068722.t1 MTR_2g078930 93.168 483 33 0 1 483 1 483 0.0 892
MS.gene068722.t1 MTR_2g079020 87.578 483 54 1 1 483 1 477 0.0 830
MS.gene068722.t1 MTR_2g078960 86.957 483 53 2 1 483 1 473 0.0 810
MS.gene068722.t1 MTR_2g078970 81.159 483 79 1 1 483 1 471 0.0 774
MS.gene068722.t1 MTR_2g078990 83.667 300 49 0 184 483 1 300 0.0 523
MS.gene068722.t1 MTR_2g079030 89.604 202 21 0 282 483 319 520 1.80e-130 389
MS.gene068722.t1 MTR_8g106670 41.190 437 257 0 40 476 9 445 4.70e-122 365
MS.gene068722.t1 MTR_6g081410 41.126 462 255 4 21 476 10 460 2.16e-121 363
MS.gene068722.t1 MTR_6g081780 41.342 462 254 5 21 476 10 460 3.26e-121 363
MS.gene068722.t1 MTR_1g108810 41.379 435 255 0 42 476 33 467 3.15e-120 361
MS.gene068722.t1 MTR_6g081240 42.212 443 248 4 42 480 9 447 2.48e-114 344
MS.gene068722.t1 MTR_6g081400 39.540 435 262 1 43 476 15 449 7.66e-114 344
MS.gene068722.t1 MTR_1g108840 39.525 463 275 3 16 477 17 475 4.29e-113 343
MS.gene068722.t1 MTR_6g081300 41.096 438 252 2 42 476 9 443 9.13e-111 336
MS.gene068722.t1 MTR_6g081810 37.901 467 253 3 11 476 4 434 9.58e-110 333
MS.gene068722.t1 MTR_6g066380 40.460 435 253 2 46 476 30 462 3.35e-109 332
MS.gene068722.t1 MTR_6g081390 38.952 439 259 3 43 476 12 446 4.85e-107 326
MS.gene068722.t1 MTR_7g082810 38.667 450 274 1 36 483 11 460 1.37e-104 320
MS.gene068722.t1 MTR_4g048000 36.646 483 295 3 12 483 22 504 2.36e-102 316
MS.gene068722.t1 MTR_6g081310 39.821 447 243 4 42 476 9 441 2.75e-102 314
MS.gene068722.t1 MTR_2g088400 35.744 484 301 3 3 476 2 485 3.68e-100 310
MS.gene068722.t1 MTR_6g004220 36.864 472 282 3 6 476 1 457 4.88e-100 309
MS.gene068722.t1 MTR_6g004220 36.864 472 282 3 6 476 8 464 1.05e-99 308
MS.gene068722.t1 MTR_1g108990 36.961 441 278 0 43 483 25 465 2.08e-94 294
MS.gene068722.t1 MTR_2g022980 35.333 450 288 2 37 483 40 489 7.88e-94 293
MS.gene068722.t1 MTR_2g088400 35.870 460 285 3 3 452 2 461 9.01e-94 292
MS.gene068722.t1 MTR_1g109060 35.650 446 277 2 43 483 24 464 7.32e-89 280
MS.gene068722.t1 MTR_1g109060 35.484 434 280 0 43 476 24 457 4.27e-88 278
MS.gene068722.t1 MTR_5g090290 36.652 442 277 3 34 474 38 477 7.61e-86 275
MS.gene068722.t1 MTR_7g087400 36.105 457 290 1 20 476 7 461 3.45e-83 265
MS.gene068722.t1 MTR_1g100180 33.891 478 299 6 10 476 3 474 7.85e-81 259
MS.gene068722.t1 MTR_8g063590 35.308 422 272 1 56 476 66 487 1.06e-80 259
MS.gene068722.t1 MTR_7g082800 36.800 375 237 0 102 476 1 375 1.29e-80 256
MS.gene068722.t1 MTR_5g033100 33.716 436 282 2 44 476 57 488 1.76e-79 256
MS.gene068722.t1 MTR_6g004220 36.296 405 242 3 6 409 8 397 2.75e-79 254
MS.gene068722.t1 MTR_1g101500 34.038 426 275 2 52 474 73 495 7.72e-79 256
MS.gene068722.t1 MTR_8g069470 33.103 435 290 1 42 476 49 482 7.72e-79 255
MS.gene068722.t1 MTR_5g010830 33.045 463 291 4 24 470 34 493 1.07e-78 255
MS.gene068722.t1 MTR_5g032720 34.562 434 282 2 44 476 37 469 9.87e-78 251
MS.gene068722.t1 MTR_6g047610 32.558 473 299 6 11 476 2 461 1.28e-75 246
MS.gene068722.t1 MTR_6g047640 34.255 470 296 5 11 476 2 462 1.48e-75 245
MS.gene068722.t1 MTR_7g087410 35.253 434 280 1 43 476 31 463 2.21e-75 245
MS.gene068722.t1 MTR_6g047640 32.979 470 283 6 11 476 2 443 6.94e-74 240
MS.gene068722.t1 MTR_1g021740 33.718 433 286 1 44 476 36 467 1.34e-73 240
MS.gene068722.t1 MTR_5g032750 34.255 470 285 10 16 476 15 469 2.21e-72 237
MS.gene068722.t1 MTR_0039s0080 33.021 427 278 5 52 474 47 469 2.22e-72 238
MS.gene068722.t1 MTR_6g027200 34.086 443 288 3 43 483 36 476 6.77e-72 236
MS.gene068722.t1 MTR_5g067460 30.785 484 317 6 10 483 17 492 4.58e-71 236
MS.gene068722.t1 MTR_5g087930 32.816 451 259 6 28 477 33 440 7.20e-71 233
MS.gene068722.t1 MTR_7g087370 34.792 457 255 7 25 476 14 432 8.89e-71 232
MS.gene068722.t1 MTR_7g087430 37.766 376 231 2 102 476 1 374 1.54e-70 230
MS.gene068722.t1 MTR_3g099720 31.568 472 313 3 7 476 10 473 1.66e-70 232
MS.gene068722.t1 MTR_3g099700 32.809 445 289 3 41 476 36 479 4.21e-70 232
MS.gene068722.t1 MTR_8g102430 33.410 437 263 5 42 474 22 434 4.69e-69 227
MS.gene068722.t1 MTR_6g047590 32.976 467 305 4 11 476 2 461 5.94e-69 228
MS.gene068722.t1 MTR_7g087410 36.533 375 237 1 102 476 1 374 3.37e-68 224
MS.gene068722.t1 MTR_6g043810 30.444 450 304 3 43 483 23 472 4.70e-66 221
MS.gene068722.t1 MTR_6g043810 30.444 450 304 3 43 483 33 482 7.44e-66 221
MS.gene068722.t1 MTR_6g088805 30.921 456 291 4 30 476 17 457 1.81e-64 216
MS.gene068722.t1 MTR_3g111020 30.000 450 306 4 10 455 19 463 5.26e-64 217
MS.gene068722.t1 MTR_6g027190 34.253 435 283 2 43 476 24 456 7.30e-64 215
MS.gene068722.t1 MTR_6g004220 36.111 324 191 3 6 328 8 316 3.53e-61 203
MS.gene068722.t1 MTR_4g027920 31.043 422 283 4 43 459 156 574 1.66e-60 209
MS.gene068722.t1 MTR_5g011540 30.973 452 299 5 38 482 38 483 1.23e-56 196
MS.gene068722.t1 MTR_4g051552 77.273 110 18 3 191 299 191 294 1.69e-48 169
MS.gene068722.t1 MTR_2g435930 25.109 458 325 3 42 482 18 474 1.45e-45 166
MS.gene068722.t1 MTR_5g090280 28.180 401 252 5 102 474 1 393 2.06e-39 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068722.t1 AT3G23560 58.985 473 191 2 9 480 5 475 0.0 578
MS.gene068722.t1 AT3G23550 59.740 462 186 0 17 478 4 465 0.0 577
MS.gene068722.t1 AT3G23560 58.209 402 165 2 9 409 5 404 5.12e-168 480
MS.gene068722.t1 AT2G34360 42.762 449 249 3 29 476 12 453 6.36e-116 350
MS.gene068722.t1 AT5G52450 44.240 434 242 0 43 476 25 458 1.53e-115 349
MS.gene068722.t1 AT1G73700 42.463 471 256 2 6 476 1 456 2.01e-114 345
MS.gene068722.t1 AT1G15150 38.696 460 277 2 20 474 2 461 2.44e-106 325
MS.gene068722.t1 AT1G66760 38.055 473 282 2 11 483 6 467 2.69e-106 325
MS.gene068722.t1 AT1G66760 38.412 466 276 2 11 476 6 460 5.11e-106 324
MS.gene068722.t1 AT1G15170 39.066 471 274 2 7 474 4 464 1.85e-102 315
MS.gene068722.t1 AT1G15160 37.691 459 283 1 21 476 5 463 1.18e-101 313
MS.gene068722.t1 AT2G04040 38.940 434 263 2 44 476 27 459 2.31e-100 310
MS.gene068722.t1 AT2G34360 38.170 448 229 1 29 476 12 411 6.94e-97 299
MS.gene068722.t1 AT3G21690 35.282 479 301 3 7 476 6 484 2.57e-96 300
MS.gene068722.t1 AT2G04080 36.866 434 272 2 44 476 27 459 2.12e-95 296
MS.gene068722.t1 AT2G04080 36.866 434 272 2 44 476 27 459 2.55e-95 296
MS.gene068722.t1 AT1G11670 36.721 433 274 0 44 476 50 482 5.08e-95 296
MS.gene068722.t1 AT2G04100 37.076 472 289 5 11 480 2 467 9.79e-95 295
MS.gene068722.t1 AT2G04100 37.045 467 287 4 11 476 2 462 1.00e-94 295
MS.gene068722.t1 AT2G04050 36.052 466 290 1 11 476 2 459 1.36e-94 295
MS.gene068722.t1 AT2G04070 37.188 441 261 3 44 476 27 459 1.72e-94 294
MS.gene068722.t1 AT1G15180 38.359 451 265 2 10 457 8 448 2.37e-94 294
MS.gene068722.t1 AT1G71140 36.591 440 269 3 42 476 24 458 5.41e-94 293
MS.gene068722.t1 AT2G04090 36.188 467 291 4 11 476 2 462 4.04e-91 286
MS.gene068722.t1 AT1G61890 35.402 435 281 0 42 476 45 479 8.60e-91 286
MS.gene068722.t1 AT1G61890 34.061 458 300 1 21 476 22 479 1.41e-90 285
MS.gene068722.t1 AT4G21903 37.685 406 252 1 71 476 80 484 3.63e-90 284
MS.gene068722.t1 AT4G21903 37.685 406 252 1 71 476 80 484 5.76e-90 284
MS.gene068722.t1 AT1G66780 35.990 414 265 0 63 476 54 467 2.52e-89 281
MS.gene068722.t1 AT3G59030 34.623 491 305 6 7 483 3 491 6.64e-89 281
MS.gene068722.t1 AT1G47530 35.991 464 292 3 13 476 8 466 1.06e-87 277
MS.gene068722.t1 AT4G21910 35.335 433 279 1 44 476 57 488 2.38e-87 277
MS.gene068722.t1 AT4G21910 35.335 433 279 1 44 476 57 488 2.38e-87 277
MS.gene068722.t1 AT1G23300 36.259 433 275 1 44 476 44 475 2.31e-86 275
MS.gene068722.t1 AT1G33090 36.717 463 286 2 14 476 12 467 2.84e-86 274
MS.gene068722.t1 AT4G21910 34.873 433 281 1 44 476 55 486 3.02e-86 274
MS.gene068722.t1 AT4G21910 34.873 433 281 1 44 476 55 486 3.02e-86 274
MS.gene068722.t1 AT1G33110 35.205 463 293 2 14 476 12 467 1.73e-85 271
MS.gene068722.t1 AT1G64820 34.240 441 282 2 40 476 25 461 4.52e-85 271
MS.gene068722.t1 AT1G66760 37.845 399 237 2 11 409 6 393 9.22e-85 266
MS.gene068722.t1 AT1G61890 35.381 407 263 0 42 448 45 451 7.68e-83 264
MS.gene068722.t1 AT1G15170 40.950 337 199 0 140 476 11 347 9.98e-83 260
MS.gene068722.t1 AT1G33100 35.619 452 290 1 25 476 14 464 1.64e-82 264
MS.gene068722.t1 AT3G26590 33.333 441 292 2 44 483 45 484 2.89e-82 263
MS.gene068722.t1 AT1G15150 40.290 345 205 1 140 483 11 355 3.15e-82 259
MS.gene068722.t1 AT4G21903 36.800 375 237 0 102 476 1 375 3.68e-82 260
MS.gene068722.t1 AT5G38030 33.411 431 286 1 44 474 45 474 1.44e-81 261
MS.gene068722.t1 AT1G12950 33.945 436 281 3 44 476 67 498 7.38e-81 260
MS.gene068722.t1 AT1G33080 34.475 467 298 3 10 476 9 467 1.08e-79 256
MS.gene068722.t1 AT1G33080 34.475 467 298 3 10 476 9 467 1.10e-79 256
MS.gene068722.t1 AT5G44050 33.895 475 303 4 3 476 8 472 1.44e-78 253
MS.gene068722.t1 AT4G00350 34.318 440 285 2 38 476 82 518 1.49e-78 255
MS.gene068722.t1 AT1G47530 36.800 375 236 1 102 476 1 374 7.40e-76 243
MS.gene068722.t1 AT3G26590 34.465 383 249 2 102 483 1 382 2.58e-74 239
MS.gene068722.t1 AT5G10420 35.337 416 264 2 44 457 38 450 2.44e-72 237
MS.gene068722.t1 AT2G38510 32.407 432 286 4 43 470 5 434 9.19e-71 233
MS.gene068722.t1 AT5G65380 31.635 471 313 4 7 476 7 469 1.00e-70 233
MS.gene068722.t1 AT1G66760 35.952 331 212 0 146 476 2 332 1.50e-68 223
MS.gene068722.t1 AT4G29140 30.963 436 295 2 42 474 54 486 2.56e-67 225
MS.gene068722.t1 AT5G19700 29.436 479 327 3 11 483 2 475 4.79e-66 221
MS.gene068722.t1 AT4G23030 34.101 434 278 4 42 470 30 460 7.13e-66 221
MS.gene068722.t1 AT5G17700 31.624 468 309 6 9 474 5 463 1.87e-64 217
MS.gene068722.t1 AT5G17700 31.624 468 309 6 9 474 5 463 1.87e-64 217
MS.gene068722.t1 AT4G25640 32.500 440 294 2 37 476 28 464 2.54e-64 216
MS.gene068722.t1 AT4G25640 32.500 440 294 2 37 476 28 464 3.02e-64 216
MS.gene068722.t1 AT5G52050 29.474 475 312 5 6 470 7 468 1.00e-63 215
MS.gene068722.t1 AT1G33110 33.995 403 258 3 9 410 6 401 2.15e-63 211
MS.gene068722.t1 AT1G58340 30.913 427 294 1 30 455 43 469 4.19e-63 214
MS.gene068722.t1 AT3G03620 31.155 459 305 5 19 474 16 466 1.01e-61 209
MS.gene068722.t1 AT3G03620 31.155 459 305 5 19 474 16 466 1.01e-61 209
MS.gene068722.t1 AT1G71870 28.696 460 310 3 42 483 22 481 1.95e-61 209
MS.gene068722.t1 AT3G59030 31.731 416 269 5 7 409 3 416 4.28e-61 206
MS.gene068722.t1 AT5G49130 31.042 451 293 5 42 476 24 472 1.05e-60 207
MS.gene068722.t1 AT4G25640 32.353 408 273 2 37 444 28 432 1.12e-59 203
MS.gene068722.t1 AT4G22790 30.108 465 316 5 19 476 2 464 5.71e-55 191
MS.gene068722.t1 AT1G15180 38.519 270 166 0 140 409 11 280 6.26e-55 189
MS.gene068722.t1 AT5G17700 30.521 403 269 6 9 409 5 398 2.27e-49 174
MS.gene068722.t1 AT2G04066 35.556 135 79 1 342 476 28 154 3.41e-20 88.2

Find 96 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATTTGTCCTCCATTTC+TGG 0.007321 2.3:+18976655 None:intergenic
CTATGATGATGTAGGGTTTA+TGG 0.149157 2.3:-18971937 MS.gene068722:intron
GTGCTACTCTTGCTAATTCT+TGG 0.196457 2.3:-18976492 MS.gene068722:CDS
GTATTGGGCTTTCGAAATTT+TGG 0.223515 2.3:-18973088 MS.gene068722:CDS
TAAGACCAATTTGCATTATA+AGG 0.233144 2.3:-18972296 MS.gene068722:intron
ATTGCATGTTTAGCTCTTTC+AGG 0.235007 2.3:+18972695 None:intergenic
GCAAACTTATGTTTGATAAT+AGG 0.247196 2.3:+18972575 None:intergenic
CACAAGGATTTCCAATGAAT+TGG 0.272145 2.3:-18972729 MS.gene068722:CDS
ATTGCTTACATGATCACTTA+TGG 0.287008 2.3:-18972909 MS.gene068722:CDS
CAATTTCATTGATTGCAATA+TGG 0.290681 2.3:-18973029 MS.gene068722:intron
TTATGCAAGTTTGGAGTATT+GGG 0.298247 2.3:-18973103 MS.gene068722:intron
TGTGGCCTAGTGTGTCAAAT+TGG 0.300864 2.3:-18971902 MS.gene068722:CDS
TTGCATATGGATTTGTTCAT+TGG 0.305216 2.3:-18973869 MS.gene068722:CDS
ACTATGGATATCTATGATAT+TGG 0.310139 2.3:-18973802 MS.gene068722:CDS
GATATTCAGTTTAGTCCATT+TGG 0.317780 2.3:+18971853 None:intergenic
TCTGTCCAAGGTGTCTTATC+AGG 0.328815 2.3:-18972512 MS.gene068722:intron
TTGGTTTCTGTCATGCTTGT+TGG 0.351093 2.3:-18976541 MS.gene068722:CDS
TTGCAACTTCTATTTCACTA+TGG 0.356695 2.3:-18973818 MS.gene068722:CDS
CAATCATTATATCAATTGTT+TGG 0.358665 2.3:-18974091 MS.gene068722:CDS
ACAAAACACAAGACCAGAAA+TGG 0.359995 2.3:-18976668 MS.gene068722:CDS
CTGCCAACAACTCATGATAA+TGG 0.361188 2.3:-18976694 MS.gene068722:CDS
ACAAGGATTTCCAATGAATT+GGG 0.362220 2.3:-18972728 MS.gene068722:CDS
TGATACCTTATAATGCAAAT+TGG 0.372077 2.3:+18972291 None:intergenic
TTATGGATTGGTCTAATTTG+TGG 0.372381 2.3:-18971920 MS.gene068722:CDS
GAAATTGTTATTTGTGAGTC+AGG 0.374296 2.3:+18973045 None:intergenic
TTGGACAGAATCTAGTAGTA+TGG 0.375092 2.3:+18972526 None:intergenic
CTTGGTGAGCTTCAGTTAGC+TGG 0.379613 2.3:-18976514 MS.gene068722:CDS
ATTATGCAAGTTTGGAGTAT+TGG 0.381254 2.3:-18973104 MS.gene068722:intron
ACACTCTGTGGACAAGGATT+TGG 0.381964 2.3:-18974179 MS.gene068722:CDS
CATAATGCAGGGGTGGTTAG+AGG 0.384287 2.3:-18972403 MS.gene068722:intron
TTGTCTTAGGTTGGTTTAAG+TGG 0.395039 2.3:-18974212 MS.gene068722:intron
AAATCCAAGGAGACATGAAA+TGG 0.395733 2.3:+18972318 None:intergenic
GTTCATGTTGGGATTGCATA+TGG 0.402339 2.3:-18973882 MS.gene068722:CDS
TACCAGCATTGGTTCATGTT+GGG 0.409517 2.3:-18973893 MS.gene068722:CDS
TTACCCATTTCATGTCTCCT+TGG 0.412363 2.3:-18972322 MS.gene068722:CDS
CTAAAGCTGTCTGTCCTCCT+TGG 0.415938 2.3:-18972662 MS.gene068722:CDS
AATTCTTGGTTTAGTGTCAC+TGG 0.416494 2.3:-18976478 MS.gene068722:CDS
TGAAAACATGAGTTGTTGTT+TGG 0.419197 2.3:+18976606 None:intergenic
GCAGGGGTGGTTAGAGGATG+TGG 0.439484 2.3:-18972397 MS.gene068722:intron
GTCATGCTTGTTGGTCACCT+TGG 0.441677 2.3:-18976532 MS.gene068722:CDS
TGTCACTGGTGTAGCAGTTA+TGG 0.450952 2.3:-18976464 MS.gene068722:intron
CAAATGGTGGAACAAAATCT+TGG 0.453309 2.3:-18976641 MS.gene068722:CDS
TTTCCATTATCATGAGTTGT+TGG 0.465756 2.3:+18976691 None:intergenic
GACCAGAAATGGAGGACAAA+TGG 0.466040 2.3:-18976657 MS.gene068722:CDS
CAAAGAAGTTTGAGAATACA+TGG 0.472713 2.3:-18973758 MS.gene068722:CDS
TTCTAGCAATGTCTGGTGAT+TGG 0.478680 2.3:+18974036 None:intergenic
AAACTAGCTCTTCCTTCTGC+AGG 0.494520 2.3:-18973690 MS.gene068722:CDS
TTCCTTCTGCAGGAATGGTA+TGG 0.496185 2.3:-18973680 MS.gene068722:intron
ATGGACTAAACTGAATATCT+CGG 0.497360 2.3:-18971849 MS.gene068722:CDS
TGGATATCTATGATATTGGT+AGG 0.501013 2.3:-18973798 MS.gene068722:CDS
TGAGTTGTTGGCAGTAATAG+AGG 0.501704 2.3:+18976703 None:intergenic
ACTTTCAGCTATACCAGCAT+TGG 0.502789 2.3:-18973904 MS.gene068722:CDS
TGCAAAGGAATATCACATGC+TGG 0.508646 2.3:-18974156 MS.gene068722:CDS
AGCTCTTCCTTCTGCAGGAA+TGG 0.510077 2.3:-18973685 MS.gene068722:CDS
GTGGCCTAGTGTGTCAAATT+GGG 0.511399 2.3:-18971901 MS.gene068722:CDS
GAAGCTGTTCTAGCAATGTC+TGG 0.513096 2.3:+18974029 None:intergenic
AGTGAAATAGAAGTTGCAAC+TGG 0.517295 2.3:+18973822 None:intergenic
AGGATGTGGTTGGCAGCACT+TGG 0.524967 2.3:-18972383 MS.gene068722:CDS
CATGTTTAGCTCTTTCAGGA+TGG 0.526642 2.3:+18972699 None:intergenic
CTAGAAACACTCTGTGGACA+AGG 0.528099 2.3:-18974185 MS.gene068722:CDS
ATCCCAACATGAACCAATGC+TGG 0.529182 2.3:+18973891 None:intergenic
TGGACTAAACTGAATATCTC+GGG 0.533874 2.3:-18971848 MS.gene068722:CDS
ACGCTATATGCAAATAATCC+TGG 0.537941 2.3:+18973984 None:intergenic
GCGTCTTGCAAAACTTGTTG+AGG 0.540279 2.3:-18973965 MS.gene068722:CDS
TCAAAACAAAACAGAATCCA+AGG 0.547423 2.3:+18972645 None:intergenic
GCAAATTGGTCTTAAATCCA+AGG 0.548068 2.3:+18972305 None:intergenic
TGGACAAGTCTGAATTTCAA+AGG 0.548674 2.3:-18973849 MS.gene068722:CDS
TATATGAAGTTTCTTATACC+AGG 0.554707 2.3:-18974002 MS.gene068722:CDS
AATCCAAGGAGACATGAAAT+GGG 0.556157 2.3:+18972319 None:intergenic
ATGATGTAGGGTTTATGGAT+TGG 0.565269 2.3:-18971932 MS.gene068722:intron
ATACCAGCATTGGTTCATGT+TGG 0.571685 2.3:-18973894 MS.gene068722:CDS
GGGTGGTTAGAGGATGTGGT+TGG 0.574146 2.3:-18972393 MS.gene068722:CDS
GCAAAGGAATATCACATGCT+GGG 0.577298 2.3:-18974155 MS.gene068722:CDS
TACCATACCATTCCTGCAGA+AGG 0.580379 2.3:+18973678 None:intergenic
CAAGGATTTCCAATGAATTG+GGG 0.583001 2.3:-18972727 MS.gene068722:CDS
AAGTTTGAGAATACATGGAG+AGG 0.586144 2.3:-18973753 MS.gene068722:CDS
ACAATCTGTAGTAAAGCCAC+TGG 0.591091 2.3:-18973931 MS.gene068722:CDS
ATACTACTAGATTCTGTCCA+AGG 0.600992 2.3:-18972524 MS.gene068722:CDS
TCAAACCTGATAAGACACCT+TGG 0.605007 2.3:+18972507 None:intergenic
ATGCTGGGAATTTATCTACA+AGG 0.607996 2.3:-18974140 MS.gene068722:CDS
CAGAAATGGAGGACAAATGG+TGG 0.611520 2.3:-18976654 MS.gene068722:CDS
TGGACAAGGATTTGGTGCAA+AGG 0.616863 2.3:-18974171 MS.gene068722:CDS
GTGGAACAAAATCTTGGACA+TGG 0.619014 2.3:-18976635 MS.gene068722:CDS
AAACACAAGACCAGAAATGG+AGG 0.620372 2.3:-18976665 MS.gene068722:CDS
ATGGTCTTAGTGCAGCTGCA+AGG 0.630564 2.3:-18972890 MS.gene068722:intron
CAATGTCTGGTGATTGGTGA+AGG 0.631557 2.3:+18974042 None:intergenic
AGTATGGAAATAGCAAGCAA+AGG 0.641984 2.3:+18972542 None:intergenic
GCAGCAAGTATCATTTCAGA+CGG 0.643990 2.3:-18976736 MS.gene068722:CDS
GTGTCCCAATTTGACACACT+AGG 0.649634 2.3:+18971897 None:intergenic
AAGGATTTCCAATGAATTGG+GGG 0.656984 2.3:-18972726 MS.gene068722:CDS
ACAAGTCTGAATTTCAAAGG+TGG 0.658385 2.3:-18973846 MS.gene068722:CDS
ATAGCTGAAAGTATAACCAG+TGG 0.708951 2.3:+18973915 None:intergenic
CAGCTAACTGAAGCTCACCA+AGG 0.723214 2.3:+18976515 None:intergenic
GAACAAAATCTTGGACATGG+AGG 0.742594 2.3:-18976632 MS.gene068722:CDS
GGTGCACTAGAAACACTCTG+TGG 0.762528 2.3:-18974191 MS.gene068722:CDS
AAACAAAACAGAATCCAAGG+AGG 0.770094 2.3:+18972648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTATACTCTATAAT+GGG + chr2.3:18972999-18973018 None:intergenic 10.0%
!! AAAATTATAATAAAGAATTG+AGG + chr2.3:18972463-18972482 None:intergenic 10.0%
!! ATTTATTTCATTATAAAAAG+TGG + chr2.3:18973127-18973146 None:intergenic 10.0%
!!! ATAAACTTTTTCTTATAATA+AGG + chr2.3:18972686-18972705 None:intergenic 10.0%
!! AAATATTATACTCTATAATG+GGG + chr2.3:18972998-18973017 None:intergenic 15.0%
!! AATAAGTTTGTAAAAATCAT+TGG + chr2.3:18972000-18972019 None:intergenic 15.0%
!! ATAATCAATTGAAGTAAATT+TGG - chr2.3:18973415-18973434 MS.gene068722:intron 15.0%
!! ATAGTAAGATTCATAATATA+AGG + chr2.3:18975442-18975461 None:intergenic 15.0%
!! CAAAATATTATACTCTATAA+TGG + chr2.3:18973000-18973019 None:intergenic 15.0%
!! CATAAAAATTAGTTCAATTA+AGG - chr2.3:18976538-18976557 MS.gene068722:CDS 15.0%
!! GCATAAACATTTATATTTAT+TGG + chr2.3:18972362-18972381 None:intergenic 15.0%
!! TAATAAAACAAAAATTAGTG+AGG + chr2.3:18973723-18973742 None:intergenic 15.0%
!! TAATCAATTGAAGTAAATTT+GGG - chr2.3:18973416-18973435 MS.gene068722:intron 15.0%
!! TATTTAACACCATATTAAAT+AGG - chr2.3:18972970-18972989 MS.gene068722:intron 15.0%
!! TCTTATATTTGATTCTTAAA+TGG + chr2.3:18973281-18973300 None:intergenic 15.0%
!! TTATTGACAAAAAAATCTTA+GGG - chr2.3:18976137-18976156 MS.gene068722:intron 15.0%
!! TTTATTGACAAAAAAATCTT+AGG - chr2.3:18976136-18976155 MS.gene068722:intron 15.0%
!!! AAATTTGTTTATATGAGAAT+TGG - chr2.3:18974025-18974044 MS.gene068722:CDS 15.0%
!!! AGTAATTTCATTTGAATTTT+TGG - chr2.3:18973195-18973214 MS.gene068722:intron 15.0%
!!! ATTGATCATTTAAGTTATTT+TGG - chr2.3:18975141-18975160 MS.gene068722:intron 15.0%
!!! ATTTTATTACTTGATTACTT+TGG - chr2.3:18972017-18972036 MS.gene068722:intron 15.0%
!!! CATTATAGAGTATAATATTT+TGG - chr2.3:18972998-18973017 MS.gene068722:intron 15.0%
!!! TATTTAATATGGTGTTAAAT+AGG + chr2.3:18972971-18972990 None:intergenic 15.0%
!!! TTGATTCTTATTTTTTTGTA+GGG - chr2.3:18972867-18972886 MS.gene068722:intron 15.0%
!!! TTTAGTAAAAATTCTCTTTT+CGG + chr2.3:18976390-18976409 None:intergenic 15.0%
!! AAAACAACAAAAACAAAATG+GGG + chr2.3:18973991-18974010 None:intergenic 20.0%
!! AAAGAACATAGTTTAATCTT+GGG + chr2.3:18974332-18974351 None:intergenic 20.0%
!! AAATGAACAAATAAAGTGAA+AGG + chr2.3:18974939-18974958 None:intergenic 20.0%
!! ACAAAACAACAAAAACAAAA+TGG + chr2.3:18973993-18974012 None:intergenic 20.0%
!! ATGATCAACATATGTAAAAA+TGG + chr2.3:18973802-18973821 None:intergenic 20.0%
!! ATTTCAAAGGAGATTATTTA+TGG + chr2.3:18973332-18973351 None:intergenic 20.0%
!! CAAAACAACAAAAACAAAAT+GGG + chr2.3:18973992-18974011 None:intergenic 20.0%
!! CAATCATTATATCAATTGTT+TGG - chr2.3:18974486-18974505 MS.gene068722:intron 20.0%
!! CATTGAATAACTAATGTATT+TGG + chr2.3:18972755-18972774 None:intergenic 20.0%
!! TACTAGGAAAAGAAAAATTA+GGG - chr2.3:18973593-18973612 MS.gene068722:intron 20.0%
!! TATTGACAAAAAAATCTTAG+GGG - chr2.3:18976138-18976157 MS.gene068722:intron 20.0%
!! TTATATTAAAGAATGCTCTA+AGG - chr2.3:18973518-18973537 MS.gene068722:intron 20.0%
!! TTTCGTGCATAATTTAATAA+AGG - chr2.3:18973494-18973513 MS.gene068722:intron 20.0%
!!! ACAAAGTTTGCTAAATTATT+AGG - chr2.3:18974978-18974997 MS.gene068722:intron 20.0%
!!! ATGTTCACATACTTATTTTA+CGG + chr2.3:18973251-18973270 None:intergenic 20.0%
!!! ATTGATCCTTTAAGTTATTT+TGG + chr2.3:18975358-18975377 None:intergenic 20.0%
!!! ATTTCATTTGAATTTTTGGT+TGG - chr2.3:18973199-18973218 MS.gene068722:intron 20.0%
!!! CTTGATTCTTATTTTTTTGT+AGG - chr2.3:18972866-18972885 MS.gene068722:intron 20.0%
!!! TAAACAAAAATTCTCTTTTC+AGG + chr2.3:18976484-18976503 None:intergenic 20.0%
!!! TATATTAGACTTTTGATTGT+TGG - chr2.3:18975075-18975094 MS.gene068722:intron 20.0%
!!! TATTTTGTATTATGCAAGTT+TGG - chr2.3:18975465-18975484 MS.gene068722:intron 20.0%
! AAATATAAGATGCTATGTTG+TGG - chr2.3:18973291-18973310 MS.gene068722:intron 25.0%
! AAGTTGTTGCAAACATTAAT+GGG + chr2.3:18973366-18973385 None:intergenic 25.0%
! ACTATGGATATCTATGATAT+TGG - chr2.3:18974775-18974794 MS.gene068722:intron 25.0%
! AGTTTAACCTTGTAAATTCA+AGG - chr2.3:18974162-18974181 MS.gene068722:CDS 25.0%
! CAAAGAACATAGTTTAATCT+TGG + chr2.3:18974333-18974352 None:intergenic 25.0%
! CTACTAGGAAAAGAAAAATT+AGG - chr2.3:18973592-18973611 MS.gene068722:intron 25.0%
! GAAAACGTTTACAAACTTAA+AGG + chr2.3:18975279-18975260 None:intergenic 25.0%
! GTATGTTCATCATAAACTTT+AGG - chr2.3:18973775-18973794 MS.gene068722:CDS 25.0%
! GTCTGAATATGTAAAATTAG+AGG - chr2.3:18974263-18974282 MS.gene068722:intron 25.0%
! TAAACCAATGAGATAAAAAG+TGG + chr2.3:18976238-18976257 None:intergenic 25.0%
! TAAGACCAATTTGCATTATA+AGG - chr2.3:18976281-18976300 MS.gene068722:intron 25.0%
! TACTTTCTTAAATCACTACT+AGG - chr2.3:18973577-18973596 MS.gene068722:intron 25.0%
! TATATGAAGTTTCTTATACC+AGG - chr2.3:18974575-18974594 MS.gene068722:intron 25.0%
! TCATAACGCTATACTTTATT+TGG + chr2.3:18972812-18972831 None:intergenic 25.0%
! TGATACCTTATAATGCAAAT+TGG + chr2.3:18976289-18976308 None:intergenic 25.0%
!! ACATAAGTCATTTAAGTTTG+AGG + chr2.3:18975271-18975290 None:intergenic 25.0%
!! ATTGTTGGCTAAATTACATA+TGG - chr2.3:18975090-18975109 MS.gene068722:intron 25.0%
!! CAATTTCATTGATTGCAATA+TGG - chr2.3:18975548-18975567 MS.gene068722:intron 25.0%
!! CATATAAACAAATTTTGCAG+AGG + chr2.3:18974020-18974039 None:intergenic 25.0%
!! GCAAACTTATGTTTGATAAT+AGG + chr2.3:18976005-18976024 None:intergenic 25.0%
!! TAATAGTGATAAGAGTATGT+AGG - chr2.3:18976504-18976523 MS.gene068722:CDS 25.0%
!! TTGTTGGCTAAATTACATAT+GGG - chr2.3:18975091-18975110 MS.gene068722:intron 25.0%
!!! AATTTTGTCTATGATGATGT+AGG - chr2.3:18976632-18976651 MS.gene068722:CDS 25.0%
!!! AATTTTTGGTTGGAGAAAAT+TGG - chr2.3:18973209-18973228 MS.gene068722:intron 25.0%
!!! ATTTTGTCTATGATGATGTA+GGG - chr2.3:18976633-18976652 MS.gene068722:CDS 25.0%
!!! GTAGTTGCAGTTTATTTTAT+GGG + chr2.3:18974116-18974135 None:intergenic 25.0%
!!! TGTAGTTGCAGTTTATTTTA+TGG + chr2.3:18974117-18974136 None:intergenic 25.0%
!!! TTGCTTTAAAAAGACTTAAG+AGG - chr2.3:18972608-18972627 MS.gene068722:CDS 25.0%
!!! TTTGTTTTGATGCTTTTGTT+TGG - chr2.3:18975945-18975964 MS.gene068722:intron 25.0%
!!! TTTTGTTTGGTCATGATATA+TGG - chr2.3:18975958-18975977 MS.gene068722:intron 25.0%
AAAAATGTCTTGCATAATGC+AGG - chr2.3:18976162-18976181 MS.gene068722:intron 30.0%
AAAATCCCTCACAAATTCTT+TGG - chr2.3:18973639-18973658 MS.gene068722:intron 30.0%
AAAATGTCTTGCATAATGCA+GGG - chr2.3:18976163-18976182 MS.gene068722:intron 30.0%
AAATGTTGCTCAAAGTAAAC+CGG + chr2.3:18975004-18975023 None:intergenic 30.0%
AACAAAGTCTAAATTACACC+AGG + chr2.3:18975405-18975424 None:intergenic 30.0%
AAGTTTATGATGAACATACG+TGG + chr2.3:18973774-18973793 None:intergenic 30.0%
ACAAAGTCTAAATTACACCA+GGG + chr2.3:18975404-18975423 None:intergenic 30.0%
ACAAGGATTTCCAATGAATT+GGG - chr2.3:18975849-18975868 MS.gene068722:intron 30.0%
ACTTTAAATTTCCTCGAACA+TGG - chr2.3:18974190-18974209 MS.gene068722:CDS 30.0%
AGGAAAAGAAAAATTAGGGA+GGG - chr2.3:18973597-18973616 MS.gene068722:intron 30.0%
ATTGCTTACATGATCACTTA+TGG - chr2.3:18975668-18975687 MS.gene068722:intron 30.0%
ATTGTTCCTATCAACATCTA+TGG + chr2.3:18972181-18972200 None:intergenic 30.0%
ATTTATTTCACGCAAATTGG+AGG - chr2.3:18974080-18974099 MS.gene068722:CDS 30.0%
CAAAGAAGTTTGAGAATACA+TGG - chr2.3:18974819-18974838 MS.gene068722:intron 30.0%
CAAGTTGTTGCAAACATTAA+TGG + chr2.3:18973367-18973386 None:intergenic 30.0%
GATATTCAGTTTAGTCCATT+TGG + chr2.3:18976727-18976746 None:intergenic 30.0%
GTCATTTATTTCACGCAAAT+TGG - chr2.3:18974077-18974096 MS.gene068722:CDS 30.0%
GTGTGACCAAAATAACTTAA+AGG - chr2.3:18975349-18975368 MS.gene068722:intron 30.0%
GTTCATACCTTGAATTTACA+AGG + chr2.3:18974172-18974191 None:intergenic 30.0%
TAGGAAAAGAAAAATTAGGG+AGG - chr2.3:18973596-18973615 MS.gene068722:intron 30.0%
TAGTGAGGAAAATTTAGAGA+GGG + chr2.3:18973708-18973727 None:intergenic 30.0%
TCAAAACAAAACAGAATCCA+AGG + chr2.3:18975935-18975954 None:intergenic 30.0%
TCATTTCCATAGATGTTGAT+AGG - chr2.3:18972172-18972191 MS.gene068722:intron 30.0%
TGGATATCTATGATATTGGT+AGG - chr2.3:18974779-18974798 MS.gene068722:intron 30.0%
TTAGTGAGGAAAATTTAGAG+AGG + chr2.3:18973709-18973728 None:intergenic 30.0%
TTGCAACTTCTATTTCACTA+TGG - chr2.3:18974759-18974778 MS.gene068722:intron 30.0%
TTTCCATTATCATGAGTTGT+TGG + chr2.3:18971889-18971908 None:intergenic 30.0%
! ATGGACTAAACTGAATATCT+CGG - chr2.3:18976728-18976747 MS.gene068722:CDS 30.0%
! ATTATGCAAGTTTGGAGTAT+TGG - chr2.3:18975473-18975492 MS.gene068722:intron 30.0%
! GTTTGAGGTTTGTAACAAAT+TGG + chr2.3:18975316-18975335 None:intergenic 30.0%
! TATGGGGTCATTTAAGTTTA+AGG - chr2.3:18975108-18975127 MS.gene068722:intron 30.0%
! TCATTGATTGCAATATGGTA+TGG - chr2.3:18975553-18975572 MS.gene068722:intron 30.0%
! TGAAAACATGAGTTGTTGTT+TGG + chr2.3:18971974-18971993 None:intergenic 30.0%
! TGTTGGCTAAATTACATATG+GGG - chr2.3:18975092-18975111 MS.gene068722:intron 30.0%
! TTATGCAAGTTTGGAGTATT+GGG - chr2.3:18975474-18975493 MS.gene068722:intron 30.0%
! TTGCATATGGATTTGTTCAT+TGG - chr2.3:18974708-18974727 MS.gene068722:intron 30.0%
! TTGGTGGCAAAATTTAGTTA+AGG - chr2.3:18973658-18973677 MS.gene068722:intron 30.0%
! TTTGTTACCATTGATGCTTT+TGG + chr2.3:18973394-18973413 None:intergenic 30.0%
!! AGTTTGCTAAATTATTAGGC+CGG - chr2.3:18974982-18975001 MS.gene068722:intron 30.0%
!! ATCATCGTTTTTGTAACGTT+TGG + chr2.3:18975221-18975240 None:intergenic 30.0%
!! GAAATTGTTATTTGTGAGTC+AGG + chr2.3:18975535-18975554 None:intergenic 30.0%
!! TAATTTTTCAACCATGTTCG+AGG + chr2.3:18974204-18974223 None:intergenic 30.0%
!! TGGGAAAGTACTAGTAAATT+GGG - chr2.3:18973435-18973454 MS.gene068722:intron 30.0%
!! TTATGGATTGGTCTAATTTG+TGG - chr2.3:18976657-18976676 MS.gene068722:CDS 30.0%
!! TTGGGAAAGTACTAGTAAAT+TGG - chr2.3:18973434-18973453 MS.gene068722:intron 30.0%
!!! GAAATTTTGGTTTTCTTAGC+TGG - chr2.3:18975502-18975521 MS.gene068722:intron 30.0%
AAACAAAACAGAATCCAAGG+AGG + chr2.3:18975932-18975951 None:intergenic 35.0%
AAATCCAAGGAGACATGAAA+TGG + chr2.3:18976262-18976281 None:intergenic 35.0%
AAATGTCTTGCATAATGCAG+GGG - chr2.3:18976164-18976183 MS.gene068722:intron 35.0%
AACAGAATCCATTCCTTCAT+AGG - chr2.3:18975726-18975745 MS.gene068722:intron 35.0%
AAGGATTTCCAATGAATTGG+GGG - chr2.3:18975851-18975870 MS.gene068722:intron 35.0%
AAGTATAGCGTTATGATGTC+CGG - chr2.3:18972816-18972835 MS.gene068722:intron 35.0%
AAGTTTGAGAATACATGGAG+AGG - chr2.3:18974824-18974843 MS.gene068722:intron 35.0%
AATCCAAGGAGACATGAAAT+GGG + chr2.3:18976261-18976280 None:intergenic 35.0%
AATGGGGAGCCTATTTAATA+TGG + chr2.3:18972982-18973001 None:intergenic 35.0%
AATTCTTGGTTTAGTGTCAC+TGG - chr2.3:18972099-18972118 MS.gene068722:intron 35.0%
ACAAAACACAAGACCAGAAA+TGG - chr2.3:18971909-18971928 MS.gene068722:CDS 35.0%
ACAAGTCTGAATTTCAAAGG+TGG - chr2.3:18974731-18974750 MS.gene068722:intron 35.0%
ACAGAATCCATTCCTTCATA+GGG - chr2.3:18975727-18975746 MS.gene068722:intron 35.0%
ACGCTATATGCAAATAATCC+TGG + chr2.3:18974596-18974615 None:intergenic 35.0%
ACGTTACAAAAACGATGATG+TGG - chr2.3:18975222-18975241 MS.gene068722:intron 35.0%
AGTATGGAAATAGCAAGCAA+AGG + chr2.3:18976038-18976057 None:intergenic 35.0%
AGTGAAATAGAAGTTGCAAC+TGG + chr2.3:18974758-18974777 None:intergenic 35.0%
ATAAACTGCAACTACACAAG+AGG - chr2.3:18974121-18974140 MS.gene068722:CDS 35.0%
ATACTACTAGATTCTGTCCA+AGG - chr2.3:18976053-18976072 MS.gene068722:intron 35.0%
ATGATGAACATACGTGGAAA+TGG + chr2.3:18973768-18973787 None:intergenic 35.0%
ATGATGTAGGGTTTATGGAT+TGG - chr2.3:18976645-18976664 MS.gene068722:CDS 35.0%
ATGCTGGGAATTTATCTACA+AGG - chr2.3:18974437-18974456 MS.gene068722:intron 35.0%
CAAAGTCTAAATTACACCAG+GGG + chr2.3:18975403-18975422 None:intergenic 35.0%
CAAGGATTTCCAATGAATTG+GGG - chr2.3:18975850-18975869 MS.gene068722:intron 35.0%
CAATAAAATGACCCCTATGA+AGG + chr2.3:18975742-18975761 None:intergenic 35.0%
CAATGAGATAAAAAGTGGCA+AGG + chr2.3:18976233-18976252 None:intergenic 35.0%
CACAAGGATTTCCAATGAAT+TGG - chr2.3:18975848-18975867 MS.gene068722:intron 35.0%
CACGGACAATCAAAAACATA+TGG - chr2.3:18972223-18972242 MS.gene068722:intron 35.0%
GCTGAAGTTAAAAAGAGATG+AGG + chr2.3:18976099-18976118 None:intergenic 35.0%
TGGACAAGTCTGAATTTCAA+AGG - chr2.3:18974728-18974747 MS.gene068722:intron 35.0%
TGGACTAAACTGAATATCTC+GGG - chr2.3:18976729-18976748 MS.gene068722:CDS 35.0%
TTGGACAGAATCTAGTAGTA+TGG + chr2.3:18976054-18976073 None:intergenic 35.0%
! AAGCCTTTTATTCTACCAAG+TGG + chr2.3:18972844-18972863 None:intergenic 35.0%
! ATAGCTGAAAGTATAACCAG+TGG + chr2.3:18974665-18974684 None:intergenic 35.0%
! CAAATGGTGGAACAAAATCT+TGG - chr2.3:18971936-18971955 MS.gene068722:intron 35.0%
! CTATGATGATGTAGGGTTTA+TGG - chr2.3:18976640-18976659 MS.gene068722:CDS 35.0%
! GTATTGGGCTTTCGAAATTT+TGG - chr2.3:18975489-18975508 MS.gene068722:intron 35.0%
! GTGTGTTCATTGATTAGACA+CGG - chr2.3:18972205-18972224 MS.gene068722:intron 35.0%
! TACATGGAGAGGATTTTCAA+TGG - chr2.3:18974835-18974854 MS.gene068722:intron 35.0%
! TGTAACGTTTGGTTCACATA+GGG + chr2.3:18975210-18975229 None:intergenic 35.0%
! TTGTAACGTTTGGTTCACAT+AGG + chr2.3:18975211-18975230 None:intergenic 35.0%
!! ATTGCATGTTTAGCTCTTTC+AGG + chr2.3:18975885-18975904 None:intergenic 35.0%
!! CTTCATAGGGGTCATTTTAT+TGG - chr2.3:18975740-18975759 MS.gene068722:intron 35.0%
!! GCAAATTGGTCTTAAATCCA+AGG + chr2.3:18976275-18976294 None:intergenic 35.0%
!! TTGTCTTAGGTTGGTTTAAG+TGG - chr2.3:18974365-18974384 MS.gene068722:intron 35.0%
!!! CTTGCCACTTTTTATCTCAT+TGG - chr2.3:18976231-18976250 MS.gene068722:intron 35.0%
AAACACAAGACCAGAAATGG+AGG - chr2.3:18971912-18971931 MS.gene068722:CDS 40.0%
AAATGACCCCTATGAAGGAA+TGG + chr2.3:18975737-18975756 None:intergenic 40.0%
ACAATCTGTAGTAAAGCCAC+TGG - chr2.3:18974646-18974665 MS.gene068722:intron 40.0%
ACCTAAGACAAAGAAGAGCA+AGG + chr2.3:18974356-18974375 None:intergenic 40.0%
ACTTTCAGCTATACCAGCAT+TGG - chr2.3:18974673-18974692 MS.gene068722:intron 40.0%
ATCCCTCACAAATTCTTTGG+TGG - chr2.3:18973642-18973661 MS.gene068722:intron 40.0%
CAGAATCCATTCCTTCATAG+GGG - chr2.3:18975728-18975747 MS.gene068722:intron 40.0%
CTGCCAACAACTCATGATAA+TGG - chr2.3:18971883-18971902 MS.gene068722:CDS 40.0%
GAAACACTCGTCATTGTAGA+TGG + chr2.3:18972947-18972966 None:intergenic 40.0%
GAACAAAATCTTGGACATGG+AGG - chr2.3:18971945-18971964 MS.gene068722:intron 40.0%
GCAAAGGAATATCACATGCT+GGG - chr2.3:18974422-18974441 MS.gene068722:intron 40.0%
GCAGCAAGTATCATTTCAGA+CGG - chr2.3:18971841-18971860 MS.gene068722:CDS 40.0%
GCTCCACTTGGTAGAATAAA+AGG - chr2.3:18972838-18972857 MS.gene068722:intron 40.0%
GTGGAACAAAATCTTGGACA+TGG - chr2.3:18971942-18971961 MS.gene068722:intron 40.0%
GTGTTCAAACTAGAAGCTAC+CGG + chr2.3:18975053-18975072 None:intergenic 40.0%
GTTCATGTTGGGATTGCATA+TGG - chr2.3:18974695-18974714 MS.gene068722:intron 40.0%
TCAAACCTGATAAGACACCT+TGG + chr2.3:18976073-18976092 None:intergenic 40.0%
TGAGTTGTTGGCAGTAATAG+AGG + chr2.3:18971877-18971896 None:intergenic 40.0%
TGCAAAGGAATATCACATGC+TGG - chr2.3:18974421-18974440 MS.gene068722:intron 40.0%
TGCCACCAAAGAATTTGTGA+GGG + chr2.3:18973647-18973666 None:intergenic 40.0%
TGCTCTTCTTTGTCTTAGGT+TGG - chr2.3:18974356-18974375 MS.gene068722:intron 40.0%
TGTTCAAACTAGAAGCTACC+GGG + chr2.3:18975052-18975071 None:intergenic 40.0%
TTACCCATTTCATGTCTCCT+TGG - chr2.3:18976255-18976274 MS.gene068722:intron 40.0%
TTCTAGCAATGTCTGGTGAT+TGG + chr2.3:18974544-18974563 None:intergenic 40.0%
TTGCCACCAAAGAATTTGTG+AGG + chr2.3:18973648-18973667 None:intergenic 40.0%
TTGGTTTCTGTCATGCTTGT+TGG - chr2.3:18972036-18972055 MS.gene068722:intron 40.0%
TTTATTCTACCAAGTGGAGC+CGG + chr2.3:18972838-18972857 None:intergenic 40.0%
! GTGCTACTCTTGCTAATTCT+TGG - chr2.3:18972085-18972104 MS.gene068722:intron 40.0%
! GTTACCATTGATGCTTTTGG+AGG + chr2.3:18973391-18973410 None:intergenic 40.0%
! TGCAAACATTAATGGGCCAT+TGG + chr2.3:18973359-18973378 None:intergenic 40.0%
! TTTTGACAAGGCATGCCAAA+TGG - chr2.3:18976709-18976728 MS.gene068722:CDS 40.0%
!! ATACCAGCATTGGTTCATGT+TGG - chr2.3:18974683-18974702 MS.gene068722:intron 40.0%
!! CATGTTTAGCTCTTTCAGGA+TGG + chr2.3:18975881-18975900 None:intergenic 40.0%
!! CTCCTTTGAAATGTAGCCAA+TGG - chr2.3:18973340-18973359 MS.gene068722:intron 40.0%
!! GGACACTCTTACTTTTGACA+AGG - chr2.3:18976697-18976716 MS.gene068722:CDS 40.0%
!! TACCAGCATTGGTTCATGTT+GGG - chr2.3:18974684-18974703 MS.gene068722:intron 40.0%
!! TTGTCCTCCAAAAGCATCAA+TGG - chr2.3:18973384-18973403 MS.gene068722:intron 40.0%
ACACTCTGTGGACAAGGATT+TGG - chr2.3:18974398-18974417 MS.gene068722:intron 45.0%
ATCCCAACATGAACCAATGC+TGG + chr2.3:18974689-18974708 None:intergenic 45.0%
ATTTCCAATGAATTGGGGGC+AGG - chr2.3:18975855-18975874 MS.gene068722:intron 45.0%
CAATGTCTGGTGATTGGTGA+AGG + chr2.3:18974538-18974557 None:intergenic 45.0%
CACCATTTGTCCTCCATTTC+TGG + chr2.3:18971925-18971944 None:intergenic 45.0%
CAGAAATGGAGGACAAATGG+TGG - chr2.3:18971923-18971942 MS.gene068722:CDS 45.0%
CATACGTGGAAATGGTCTTC+AGG + chr2.3:18973760-18973779 None:intergenic 45.0%
CATCACACTTAAAAGACCCC+TGG - chr2.3:18975384-18975403 MS.gene068722:intron 45.0%
CTAGAAACACTCTGTGGACA+AGG - chr2.3:18974392-18974411 MS.gene068722:intron 45.0%
GAAGCTGTTCTAGCAATGTC+TGG + chr2.3:18974551-18974570 None:intergenic 45.0%
GACCAGAAATGGAGGACAAA+TGG - chr2.3:18971920-18971939 MS.gene068722:CDS 45.0%
GCCTTGCTCTTCTTTGTCTT+AGG - chr2.3:18974352-18974371 MS.gene068722:intron 45.0%
GTGGCCTAGTGTGTCAAATT+GGG - chr2.3:18976676-18976695 MS.gene068722:CDS 45.0%
GTGTCCCAATTTGACACACT+AGG + chr2.3:18976683-18976702 None:intergenic 45.0%
GTTCAAACTAGAAGCTACCG+GGG + chr2.3:18975051-18975070 None:intergenic 45.0%
TACCATACCATTCCTGCAGA+AGG + chr2.3:18974902-18974921 None:intergenic 45.0%
TGTCACTGGTGTAGCAGTTA+TGG - chr2.3:18972113-18972132 MS.gene068722:intron 45.0%
TGTGGCCTAGTGTGTCAAAT+TGG - chr2.3:18976675-18976694 MS.gene068722:CDS 45.0%
TTCAAACTAGAAGCTACCGG+GGG + chr2.3:18975050-18975069 None:intergenic 45.0%
TTCCTTCTGCAGGAATGGTA+TGG - chr2.3:18974897-18974916 MS.gene068722:intron 45.0%
! AAACTAGCTCTTCCTTCTGC+AGG - chr2.3:18974887-18974906 MS.gene068722:intron 45.0%
! GGCCATTGGCTACATTTCAA+AGG + chr2.3:18973345-18973364 None:intergenic 45.0%
! TCTGTCCAAGGTGTCTTATC+AGG - chr2.3:18976065-18976084 MS.gene068722:intron 45.0%
!! GCGTCTTGCAAAACTTGTTG+AGG - chr2.3:18974612-18974631 MS.gene068722:intron 45.0%
!! TGGACAAGGATTTGGTGCAA+AGG - chr2.3:18974406-18974425 MS.gene068722:intron 45.0%
!! AAACAAATAAAAAAATTATA+AGG + chr2.3:18973950-18973969 None:intergenic 5.0%
!! AATATTTATTAAAATACTAA+AGG + chr2.3:18972290-18972309 None:intergenic 5.0%
!!! TTATAAAATTTTATCTAAAT+TGG + chr2.3:18973467-18973486 None:intergenic 5.0%
AGCTCTTCCTTCTGCAGGAA+TGG - chr2.3:18974892-18974911 MS.gene068722:intron 50.0%
AGTGCAGCTGCAAGGTTAGT+TGG - chr2.3:18975695-18975714 MS.gene068722:intron 50.0%
AGTTGAGTTACCCAATCCCC+CGG - chr2.3:18975031-18975050 MS.gene068722:intron 50.0%
CAGCTAACTGAAGCTCACCA+AGG + chr2.3:18972065-18972084 None:intergenic 50.0%
CATAATGCAGGGGTGGTTAG+AGG - chr2.3:18976174-18976193 MS.gene068722:intron 50.0%
CTAAAGCTGTCTGTCCTCCT+TGG - chr2.3:18975915-18975934 MS.gene068722:intron 50.0%
CTTGGTGAGCTTCAGTTAGC+TGG - chr2.3:18972063-18972082 MS.gene068722:intron 50.0%
GGTGCACTAGAAACACTCTG+TGG - chr2.3:18974386-18974405 MS.gene068722:intron 50.0%
TGTCTTGCATAATGCAGGGG+TGG - chr2.3:18976167-18976186 MS.gene068722:intron 50.0%
TTATGATGTCCGGCTCCACT+TGG - chr2.3:18972826-18972845 MS.gene068722:intron 50.0%
! ATGGTCTTAGTGCAGCTGCA+AGG - chr2.3:18975687-18975706 MS.gene068722:intron 50.0%
! GTCATGCTTGTTGGTCACCT+TGG - chr2.3:18972045-18972064 MS.gene068722:intron 50.0%
ACTAGAAGCTACCGGGGGAT+TGG + chr2.3:18975045-18975064 None:intergenic 55.0%
AGGATGTGGTTGGCAGCACT+TGG - chr2.3:18976194-18976213 MS.gene068722:intron 55.0%
ATGGCCTGCCCCCAATTCAT+TGG + chr2.3:18975862-18975881 None:intergenic 55.0%
CTAGAAGCTACCGGGGGATT+GGG + chr2.3:18975044-18975063 None:intergenic 55.0%
GGGGGATTGGGTAACTCAAC+TGG + chr2.3:18975032-18975051 None:intergenic 55.0%
GGGTGGTTAGAGGATGTGGT+TGG - chr2.3:18976184-18976203 MS.gene068722:intron 55.0%
GCAGGGGTGGTTAGAGGATG+TGG - chr2.3:18976180-18976199 MS.gene068722:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 18971838 18976761 18971838 ID=MS.gene068722
chr2.3 mRNA 18971838 18976761 18971838 ID=MS.gene068722.t1;Parent=MS.gene068722
chr2.3 exon 18976465 18976761 18976465 ID=MS.gene068722.t1.exon1;Parent=MS.gene068722.t1
chr2.3 CDS 18976465 18976761 18976465 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
chr2.3 exon 18973681 18974225 18973681 ID=MS.gene068722.t1.exon2;Parent=MS.gene068722.t1
chr2.3 CDS 18973681 18974225 18973681 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
chr2.3 exon 18973030 18973116 18973030 ID=MS.gene068722.t1.exon3;Parent=MS.gene068722.t1
chr2.3 CDS 18973030 18973116 18973030 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
chr2.3 exon 18972891 18972947 18972891 ID=MS.gene068722.t1.exon4;Parent=MS.gene068722.t1
chr2.3 CDS 18972891 18972947 18972891 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
chr2.3 exon 18972513 18972751 18972513 ID=MS.gene068722.t1.exon5;Parent=MS.gene068722.t1
chr2.3 CDS 18972513 18972751 18972513 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
chr2.3 exon 18972297 18972415 18972297 ID=MS.gene068722.t1.exon6;Parent=MS.gene068722.t1
chr2.3 CDS 18972297 18972415 18972297 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
chr2.3 exon 18971838 18971945 18971838 ID=MS.gene068722.t1.exon7;Parent=MS.gene068722.t1
chr2.3 CDS 18971838 18971945 18971838 ID=cds.MS.gene068722.t1;Parent=MS.gene068722.t1
Gene Sequence

>MS.gene068722

ATGGCAGCAAGTATCATTTCAGACGGCACAGAAACACCTCTATTACTGCCAACAACTCATGATAATGGAAAACAAAACACAAGACCAGAAATGGAGGACAAATGGTGGAACAAAATCTTGGACATGGAGGAAGCCAAACAACAACTCATGTTTTCACTACCAATGATTTTTACAAACTTATTTTATTACTTGATTACTTTGGTTTCTGTCATGCTTGTTGGTCACCTTGGTGAGCTTCAGTTAGCTGGTGCTACTCTTGCTAATTCTTGGTTTAGTGTCACTGGTGTAGCAGTTATGGTAATTAATTTACAGTTTTTGCATTATTATATTTTGTTCATTTCCATAGATGTTGATAGGAACAATTCTTGTGTGTTCATTGATTAGACACGGACAATCAAAAACATATGGTACAATGTTATTAAATAACTTCAACATGATATGTGATGTCTCCTTTAGTATTTTAATAAATATTGAACTCTTGATCAAAATAAAATTCTTGAACTCTTATTGATTAATTACATCCAATAAATATAAATGTTTATGCATGAATTACTAGTAAAATGTACATTTATATGTATATATGATACAAGATTAGATATTTCTTTTGTTTACGTTAGTATTACCTCAATTCTTTATTATAATTTTTTTTTTTACTTTTTAGATTCATTGAATACTTATGTATTTGATCTATATCATAGTACATATACATTAGTTAATCAATGACTCTTAAAAAGTAAATTTTTTCTCATAATAAAGACGAGATAAAGTATTTGCTTTAAAAAGACTTAAGAGGTCAGTGATTTGTTTAGAGATTTGAATGATGTTAGAATATTACAACTTCGAATCCTTATTATAAGAAAAAGTTTATCTTTCAGATTCATTGAATAATTTATGTATTCAATCTATATCATAGACCAAATACATTAGTTATTCAATGACTCTGAATAATGATATTTTTTCTTATATAAAGACCAAATAAAGTATAGCGTTATGATGTCCGGCTCCACTTGGTAGAATAAAAGGCTTGACTTGATTCTTATTTTTTTGTAGGGATTGTCTTTATTCTTTTTGTAGCTTGTAGTTGTAGTATTTACTATACTATTAGACCATCTACAATGACGAGTGTTTCGCCTATTTAACACCATATTAAATAGGCTCCCCATTATAGAGTATAATATTTTGGTGTATAGAGAAGAGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATCACTCTCTCCACTTTTTATAATGAAATAAATAAATTTTGTTGCAATGTAATGATATAGAATTATTTATGTGATTTATTCAGTAATTTCATTTGAATTTTTGGTTGGAGAAAATTGGTGCTTATTAAATATTACCGTAAAATAAGTATGTGAACATAGAGAATCCATTTAAGAATCAAATATAAGATGCTATGTTGTGGATGCTCTTAGTTTCACCATAAATAATCTCCTTTGAAATGTAGCCAATGGCCCATTAATGTTTGCAACAACTTGTCCTCCAAAAGCATCAATGGTAACAAAAATAATCAATTGAAGTAAATTTGGGAAAGTACTAGTAAATTGGGAAAGTACCAATTTAGATAAAATTTTATAAAACACATTTTCGTGCATAATTTAATAAAGGATTATATTAAAGAATGCTCTAAGGACATTGTTTAAAAAAGTGCTAAAGTTTAATATAAAATACTTTCTTAAATCACTACTAGGAAAAGAAAAATTAGGGAGGGATATTAGTGACAAAAAAATAAAATCCCTCACAAATTCTTTGGTGGCAAAATTTAGTTAAGGAATCAGAAAGAGATTTCACGTTTTCCCTCTCTAAATTTTCCTCACTAATTTTTGTTTTATTAGTAGTGAATAATGACCTGAAGACCATTTCCACGTATGTTCATCATAAACTTTAGGACCATTTTTACATATGTTGATCATGATATGAAAAATTCTTGTATGTGCTCATTAGACATAGTCAATTAAAAAGATAAGATATGATATGATTTTATTAATATTTAAATACGCATTTGATCGCTTCAAATATATTATTTTTCATATTTAGTCCTTATAATTTTTTTATTTGTTTTTAATTCTTGCAGATATACCCCATTTTGTTTTTGTTGTTTTGTTGAGCCTCTGCAAAATTTGTTTATATGAGAATTGGTCATTGTAATATGTGTAATTTTTATTTAAGTCATTTATTTCACGCAAATTGGAGGACTTTTTTCTCCCATAAAATAAACTGCAACTACACAAGAGGTGCTAGCTTAATAGTAAGAGTTTAACCTTGTAAATTCAAGGTATGAACTTTAAATTTCCTCGAACATGGTTGAAAAATTATCATTAGTGTCACTTTAATTAACTTATAACTGATATGAAGTCTGAATATGTAAAATTAGAGGATTAACATTAAATATTCTACATGTTACAATACATAAATGTTGTCCCAAGATTAAACTATGTTCTTTGCCTTGCTCTTCTTTGTCTTAGGTTGGTTTAAGTGGTGCACTAGAAACACTCTGTGGACAAGGATTTGGTGCAAAGGAATATCACATGCTGGGAATTTATCTACAAGGCTCTTGCATTATATCTTTTATTTTTTCAATCATTATATCAATTGTTTGGTTCTACACAGAACACATTCTAGTGTTCCTTCACCAATCACCAGACATTGCTAGAACAGCTTCACTCTATATGAAGTTTCTTATACCAGGATTATTTGCATATAGCGTCTTGCAAAACTTGTTGAGGTTTCTACAAACACAATCTGTAGTAAAGCCACTGGTTATACTTTCAGCTATACCAGCATTGGTTCATGTTGGGATTGCATATGGATTTGTTCATTGGACAAGTCTGAATTTCAAAGGTGGACCAGTTGCAACTTCTATTTCACTATGGATATCTATGATATTGGTAGGTTTTTATGTCTTGTATGCAAAGAAGTTTGAGAATACATGGAGAGGATTTTCAATGGAGTCATTTCAGTACTTGTATACAAACATGAAACTAGCTCTTCCTTCTGCAGGAATGGTATGGTATGAGTTTCTAAAAGCCTTTCACTTTATTTGTTCATTTTGATGATTGATCTTAGAAAACAAAGTTTGCTAAATTATTAGGCCGGTTTACTTTGAGCAACATTTTCAAACCAGTTGAGTTACCCAATCCCCCGGTAGCTTCTAGTTTGAACACTATATATTAGACTTTTGATTGTTGGCTAAATTACATATGGGGTCATTTAAGTTTAAGGTTTGTAACAGATTGATCATTTAAGTTATTTTGGTCACACATAAGTCCTTTAAGTTTGTAAACGTTTTCAATTTAATCCCTATGTGAACCAAACGTTACAAAAACGATGATGTGGTAGAAAGACTAAATCGAAAACGTTTACAAACTTAAATGACTTATGTGTGACTAAAATAACTTAAAAGACCAATTTGTTACAAACCTCAAACTTAAATGACTTATGTGTGACCAAAATAACTTAAAGGATCAATATGTTACATCACACTTAAAAGACCCCTGGTGTAATTTAGACTTTGTTGTTTAATTAAAGATCCTTATATTATGAATCTTACTATTTTTATTTTGTATTATGCAAGTTTGGAGTATTGGGCTTTCGAAATTTTGGTTTTCTTAGCTGGATTAATGCCTGACTCACAAATAACAATTTCATTGATTGCAATATGGTATGGTTCTTAATTATTATTTTGCTTAAAAAAAAAAGATTCATATGATTAACTATTGCTAATCTTCAAAAAATTAATGCAGTGAAAACACAGAATTCATTGCTTACATGATCACTTATGGTCTTAGTGCAGCTGCAAGGTTAGTTGGTTTAAATTAACAGAATCCATTCCTTCATAGGGGTCATTTTATTGGACTTTTCTCATGAATAAGCATTAAGCACTTTAATCTATGTTCTTGTAAATTTATTGAAAATTTTGAAACTTGAACTTTTTTATAGCACAAGGATTTCCAATGAATTGGGGGCAGGCCATCCTGAAAGAGCTAAACATGCAATGAGAGTCACTCTAAAGCTGTCTGTCCTCCTTGGATTCTGTTTTGTTTTGATGCTTTTGTTTGGTCATGATATATGGATTCAAATGTTTAGTGATAGTCCTATTATCAAACATAAGTTTGCTTCAATAACACCTTTGCTTGCTATTTCCATACTACTAGATTCTGTCCAAGGTGTCTTATCAGGTTTGAATTCCTCATCTCTTTTTAACTTCAGCTTTTTCTCATCAACATGTTTATTGACAAAAAAATCTTAGGGGTAAAAATGTCTTGCATAATGCAGGGGTGGTTAGAGGATGTGGTTGGCAGCACTTGGTTGTTTATGTCAACCTTGCCACTTTTTATCTCATTGGTTTACCCATTTCATGTCTCCTTGGATTTAAGACCAATTTGCATTATAAGGTATCATACTCATTATTCTCATATAAGTGTCGCATTTGTATGTAATACTTTCTCTTTTAAAATAACTGTCATTTTAATAAAAAACCGAAAAGAGAATTTTTACTAAAACGATAAGTGTAATAGTAAGCATACATAAAAGAGAATTTTTCATTGATCAGATACATTAGTTGTTCAATGACCTGAAAAGAGAATTTTTGTTTATAATAGTGATAAGAGTATGTAGGTACTATTTTATCATAAAAATTAGTTCAATTAAGGATGCTTGTGTTGATGTAAAGAAGACTCATTTTGATTTTACATTATTTTGTTTAATCATTGTGTTTCTTTTTAATTTTGTCTATGATGATGTAGGGTTTATGGATTGGTCTAATTTGTGGCCTAGTGTGTCAAATTGGGACACTCTTACTTTTGACAAGGCATGCCAAATGGACTAAACTGAATATCTCGGGACAGAGATAA
Protein sequence

>MS.gene068722.t1

MAASIISDGTETPLLLPTTHDNGKQNTRPEMEDKWWNKILDMEEAKQQLMFSLPMIFTNLFYYLITLVSVMLVGHLGELQLAGATLANSWFSVTGVAVMVGLSGALETLCGQGFGAKEYHMLGIYLQGSCIISFIFSIIISIVWFYTEHILVFLHQSPDIARTASLYMKFLIPGLFAYSVLQNLLRFLQTQSVVKPLVILSAIPALVHVGIAYGFVHWTSLNFKGGPVATSISLWISMILVGFYVLYAKKFENTWRGFSMESFQYLYTNMKLALPSAGMVCLEYWAFEILVFLAGLMPDSQITISLIAICENTEFIAYMITYGLSAAASTRISNELGAGHPERAKHAMRVTLKLSVLLGFCFVLMLLFGHDIWIQMFSDSPIIKHKFASITPLLAISILLDSVQGVLSGVVRGCGWQHLVVYVNLATFYLIGLPISCLLGFKTNLHYKGLWIGLICGLVCQIGTLLLLTRHAKWTKLNISGQR