Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068827.t1 | XP_013453887.1 | 96 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 1.40E-127 | 465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068827.t1 | A0A072UFN7 | 96.0 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 9.8e-128 | 465.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053959 | MS.gene068827 | 0.982015 | 5.13E-154 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068827.t1 | MTR_5g049260 | 96.047 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 7.28e-175 | 481 |
| MS.gene068827.t1 | MTR_5g049270 | 96.047 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 7.28e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068827.t1 | AT3G25545 | 48.936 | 235 | 105 | 5 | 1 | 222 | 1 | 233 | 5.38e-62 | 196 |
Find 82 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATGGGAGAGAGGGAGTTC+AGG | 0.193955 | 5.2:-43167129 | None:intergenic |
| GGGCTAGCTTGTGTGTTTCT+TGG | 0.231999 | 5.2:+43167490 | MS.gene068827:CDS |
| ACGGCGTAAGCGCGATTATC+AGG | 0.233809 | 5.2:-43167219 | None:intergenic |
| GGACTCGGTGCCGCCATTCT+TGG | 0.292638 | 5.2:+43167444 | MS.gene068827:CDS |
| GGTTTGGGTGAGTTTGAGTT+TGG | 0.295588 | 5.2:+43167561 | MS.gene068827:CDS |
| GGAGGATGAGAGAGGAGGTT+AGG | 0.297528 | 5.2:-43167107 | None:intergenic |
| AAGGATTTGCTTCGAGGTTT+GGG | 0.314069 | 5.2:+43167546 | MS.gene068827:CDS |
| GAGGATGAGAGAGGAGGTTA+GGG | 0.324797 | 5.2:-43167106 | None:intergenic |
| AGAGAGGAGGTTAGGGTATG+TGG | 0.351847 | 5.2:-43167099 | None:intergenic |
| GAAGGATTTGCTTCGAGGTT+TGG | 0.357970 | 5.2:+43167545 | MS.gene068827:CDS |
| TCAAGTATGATAACCGAATC+AGG | 0.365883 | 5.2:-43167273 | None:intergenic |
| GATGGGAGAGAGGGAGTTCA+GGG | 0.377552 | 5.2:-43167128 | None:intergenic |
| GGGTGAGGAGGTTGTGGAAA+AGG | 0.377658 | 5.2:-43167077 | None:intergenic |
| AAGATGGTGTGAAATTGTTT+AGG | 0.389664 | 5.2:-43166954 | None:intergenic |
| TCTTCTTCTAGTAATCTTGA+TGG | 0.395897 | 5.2:-43166931 | None:intergenic |
| GTTTGGGTGAGTTTGAGTTT+GGG | 0.402440 | 5.2:+43167562 | MS.gene068827:CDS |
| CCGTCTGGAAGCGTTGTTGA+TGG | 0.413333 | 5.2:+43167423 | MS.gene068827:CDS |
| AGGTTAGGGTATGTGGGGTG+AGG | 0.413432 | 5.2:-43167092 | None:intergenic |
| GAGAGGAGGTTAGGGTATGT+GGG | 0.431391 | 5.2:-43167098 | None:intergenic |
| TGGATGTTGATGGTGTTGTT+AGG | 0.444194 | 5.2:-43167150 | None:intergenic |
| GTTGTGGAAAAGGGAGAGAG+AGG | 0.451397 | 5.2:-43167067 | None:intergenic |
| TTTCAAATTTGGGAGGAGTA+AGG | 0.452557 | 5.2:+43167602 | MS.gene068827:CDS |
| TAACCGAATCAGGGCGGATC+TGG | 0.453361 | 5.2:-43167263 | None:intergenic |
| GGTGAGGAGGTTGTGGAAAA+GGG | 0.458126 | 5.2:-43167076 | None:intergenic |
| GGAGAAATTGTTGAGTGGAT+TGG | 0.462542 | 5.2:+43167392 | MS.gene068827:CDS |
| TGTTGATGGTGTTGTTAGGA+TGG | 0.464009 | 5.2:-43167146 | None:intergenic |
| GGATGGTGGAAGAGAGAGAG+TGG | 0.466243 | 5.2:-43167170 | None:intergenic |
| CAACCAGATCCGCCCTGATT+CGG | 0.467578 | 5.2:+43167260 | MS.gene068827:CDS |
| TTAGGGTATGTGGGGTGAGG+AGG | 0.469748 | 5.2:-43167089 | None:intergenic |
| TATGTGGGGTGAGGAGGTTG+TGG | 0.473676 | 5.2:-43167083 | None:intergenic |
| AGAAAAGGTGAAGGGAGTGA+TGG | 0.475108 | 5.2:-43166979 | None:intergenic |
| TTGTTGAAGGATTTGCTTCG+AGG | 0.480507 | 5.2:+43167540 | MS.gene068827:CDS |
| AGAGAGAGAGTGGATGTTGA+TGG | 0.485843 | 5.2:-43167160 | None:intergenic |
| TTGAACGGCGGCGAGGAGGA+TGG | 0.486410 | 5.2:-43167187 | None:intergenic |
| GTGTTGTTAGGATGGGAGAG+AGG | 0.495674 | 5.2:-43167138 | None:intergenic |
| GACCACGGTGATTCATCGGC+TGG | 0.499631 | 5.2:-43167302 | None:intergenic |
| GGATTGGAGTATTACCCGTC+TGG | 0.503439 | 5.2:+43167408 | MS.gene068827:CDS |
| AATCTGACACCGTCCAAGAA+TGG | 0.503968 | 5.2:-43167457 | None:intergenic |
| GAGTTCAGGGAGGATGAGAG+AGG | 0.511477 | 5.2:-43167115 | None:intergenic |
| GGCGGATCTGGTTGCTGAGG+AGG | 0.512243 | 5.2:-43167251 | None:intergenic |
| ATAGCGATGATGAGGAGTGT+TGG | 0.523299 | 5.2:-43167036 | None:intergenic |
| GAAGGGAGTGATGGAGAAGA+TGG | 0.529330 | 5.2:-43166970 | None:intergenic |
| AGAGGCTGTTGTTGTGTGTG+AGG | 0.529595 | 5.2:-43167009 | None:intergenic |
| TTGTGGAAAAGGGAGAGAGA+GGG | 0.534591 | 5.2:-43167066 | None:intergenic |
| ATGAGGAGTGTTGGTTTGAG+AGG | 0.539310 | 5.2:-43167027 | None:intergenic |
| AGCAGACCACGGTGATTCAT+CGG | 0.542746 | 5.2:-43167306 | None:intergenic |
| GAGAAGAGATAGCGATGATG+AGG | 0.544694 | 5.2:-43167044 | None:intergenic |
| TGTTGTTAGGATGGGAGAGA+GGG | 0.545857 | 5.2:-43167137 | None:intergenic |
| GTTGTTGTGTGTGAGGGAAA+AGG | 0.547021 | 5.2:-43167002 | None:intergenic |
| TGAAAGGAAGAAAGCGGATG+AGG | 0.548854 | 5.2:+43167371 | MS.gene068827:CDS |
| GGGAAAAGGAGAAAAGGTGA+AGG | 0.553523 | 5.2:-43166988 | None:intergenic |
| ACAACATCTGAATCAAATTG+AGG | 0.556465 | 5.2:-43167513 | None:intergenic |
| GGGAGAGAGGGAGTTCAGGG+AGG | 0.560544 | 5.2:-43167125 | None:intergenic |
| GGAAGCGTTGTTGATGGACT+CGG | 0.567830 | 5.2:+43167429 | MS.gene068827:CDS |
| GAGGCTGTTGTTGTGTGTGA+GGG | 0.570892 | 5.2:-43167008 | None:intergenic |
| GTTGATGGTGTTGTTAGGAT+GGG | 0.571485 | 5.2:-43167145 | None:intergenic |
| AAGCGCGATTATCAGGGATA+GGG | 0.574208 | 5.2:-43167212 | None:intergenic |
| CATCAACAACGCTTCCAGAC+GGG | 0.576803 | 5.2:-43167422 | None:intergenic |
| GTTTGGGTTTAGTGATGATG+AGG | 0.577632 | 5.2:+43167578 | MS.gene068827:CDS |
| TAAGCGCGATTATCAGGGAT+AGG | 0.580517 | 5.2:-43167213 | None:intergenic |
| GCTGAGGAGGATTTCCGCGA+CGG | 0.583968 | 5.2:-43167238 | None:intergenic |
| CGAGGCGGTTGCATTCAAGC+TGG | 0.584066 | 5.2:+43167338 | MS.gene068827:CDS |
| CTTGAATGCAACCGCCTCGT+CGG | 0.585956 | 5.2:-43167334 | None:intergenic |
| GGAAAAGGAGAAAAGGTGAA+GGG | 0.589592 | 5.2:-43166987 | None:intergenic |
| CGGCGTAAGCGCGATTATCA+GGG | 0.590741 | 5.2:-43167218 | None:intergenic |
| TTCAGGGAGGATGAGAGAGG+AGG | 0.592701 | 5.2:-43167112 | None:intergenic |
| TCTTCTAGTAATCTTGATGG+TGG | 0.594403 | 5.2:-43166928 | None:intergenic |
| AACGGCGGCGAGGAGGATGG+TGG | 0.595481 | 5.2:-43167184 | None:intergenic |
| AGAGGAGGTTAGGGTATGTG+GGG | 0.597052 | 5.2:-43167097 | None:intergenic |
| GTGTGAGGGAAAAGGAGAAA+AGG | 0.601573 | 5.2:-43166994 | None:intergenic |
| TCGGTGCCGCCATTCTTGGA+CGG | 0.607388 | 5.2:+43167448 | MS.gene068827:CDS |
| GATGAGGAGAAATTGTTGAG+TGG | 0.611429 | 5.2:+43167387 | MS.gene068827:CDS |
| CCATCAACAACGCTTCCAGA+CGG | 0.615004 | 5.2:-43167423 | None:intergenic |
| CAGGGCGGATCTGGTTGCTG+AGG | 0.621735 | 5.2:-43167254 | None:intergenic |
| CAAGTATGATAACCGAATCA+GGG | 0.627258 | 5.2:-43167272 | None:intergenic |
| TGGTCTGCTGTCTTCCGACG+AGG | 0.661086 | 5.2:+43167320 | MS.gene068827:CDS |
| TCTGCTGTCTTCCGACGAGG+CGG | 0.672935 | 5.2:+43167323 | MS.gene068827:CDS |
| CGTCGGAAGACAGCAGACCA+CGG | 0.686393 | 5.2:-43167317 | None:intergenic |
| TAATCGCGCTTACGCCGTCG+CGG | 0.704779 | 5.2:+43167224 | MS.gene068827:CDS |
| CTGACACCGTCCAAGAATGG+CGG | 0.706584 | 5.2:-43167454 | None:intergenic |
| GTATGATAACCGAATCAGGG+CGG | 0.767199 | 5.2:-43167269 | None:intergenic |
| ATCCAGCCGATGAATCACCG+TGG | 0.786438 | 5.2:+43167300 | MS.gene068827:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATGAGGTTTTCAAATTT+GGG | + | chr5.2:43167592-43167611 | MS.gene068827:CDS | 25.0% |
| !!! | GTGTCAGATTTTGAAAATTA+GGG | + | chr5.2:43167470-43167489 | MS.gene068827:CDS | 25.0% |
| AAGATGGTGTGAAATTGTTT+AGG | - | chr5.2:43166957-43166976 | None:intergenic | 30.0% | |
| ACAACATCTGAATCAAATTG+AGG | - | chr5.2:43167516-43167535 | None:intergenic | 30.0% | |
| TCTTCTTCTAGTAATCTTGA+TGG | - | chr5.2:43166934-43166953 | None:intergenic | 30.0% | |
| ! | GATGATGAGGTTTTCAAATT+TGG | + | chr5.2:43167591-43167610 | MS.gene068827:CDS | 30.0% |
| !! | GGTGTCAGATTTTGAAAATT+AGG | + | chr5.2:43167469-43167488 | MS.gene068827:CDS | 30.0% |
| !!! | AGATGTTGTTTTGTTGTTGA+AGG | + | chr5.2:43167527-43167546 | MS.gene068827:CDS | 30.0% |
| CAAGTATGATAACCGAATCA+GGG | - | chr5.2:43167275-43167294 | None:intergenic | 35.0% | |
| TCAAGTATGATAACCGAATC+AGG | - | chr5.2:43167276-43167295 | None:intergenic | 35.0% | |
| TCTTCTAGTAATCTTGATGG+TGG | - | chr5.2:43166931-43166950 | None:intergenic | 35.0% | |
| TTTCAAATTTGGGAGGAGTA+AGG | + | chr5.2:43167602-43167621 | MS.gene068827:CDS | 35.0% | |
| ! | ATGAGGTTTTCAAATTTGGG+AGG | + | chr5.2:43167595-43167614 | MS.gene068827:CDS | 35.0% |
| ! | TTTTGCTGAAAGGAAGAAAG+CGG | + | chr5.2:43167365-43167384 | MS.gene068827:CDS | 35.0% |
| GATGAGGAGAAATTGTTGAG+TGG | + | chr5.2:43167387-43167406 | MS.gene068827:CDS | 40.0% | |
| GGAAAAGGAGAAAAGGTGAA+GGG | - | chr5.2:43166990-43167009 | None:intergenic | 40.0% | |
| GGAGAAATTGTTGAGTGGAT+TGG | + | chr5.2:43167392-43167411 | MS.gene068827:CDS | 40.0% | |
| ! | AAGGATTTGCTTCGAGGTTT+GGG | + | chr5.2:43167546-43167565 | MS.gene068827:CDS | 40.0% |
| ! | GTTTGGGTGAGTTTGAGTTT+GGG | + | chr5.2:43167562-43167581 | MS.gene068827:CDS | 40.0% |
| ! | GTTTGGGTTTAGTGATGATG+AGG | + | chr5.2:43167578-43167597 | MS.gene068827:CDS | 40.0% |
| ! | TTGTTGAAGGATTTGCTTCG+AGG | + | chr5.2:43167540-43167559 | MS.gene068827:CDS | 40.0% |
| !! | GTTGATGGTGTTGTTAGGAT+GGG | - | chr5.2:43167148-43167167 | None:intergenic | 40.0% |
| !! | TGGATGTTGATGGTGTTGTT+AGG | - | chr5.2:43167153-43167172 | None:intergenic | 40.0% |
| !! | TGTTGATGGTGTTGTTAGGA+TGG | - | chr5.2:43167149-43167168 | None:intergenic | 40.0% |
| !!! | ATCAGGGATAGGGTTTTGAA+CGG | - | chr5.2:43167205-43167224 | None:intergenic | 40.0% |
| AAGCGCGATTATCAGGGATA+GGG | - | chr5.2:43167215-43167234 | None:intergenic | 45.0% | |
| AATCTGACACCGTCCAAGAA+TGG | - | chr5.2:43167460-43167479 | None:intergenic | 45.0% | |
| AGAAAAGGTGAAGGGAGTGA+TGG | - | chr5.2:43166982-43167001 | None:intergenic | 45.0% | |
| AGAGAGAGAGTGGATGTTGA+TGG | - | chr5.2:43167163-43167182 | None:intergenic | 45.0% | |
| GAGAAGAGATAGCGATGATG+AGG | - | chr5.2:43167047-43167066 | None:intergenic | 45.0% | |
| GGGAAAAGGAGAAAAGGTGA+AGG | - | chr5.2:43166991-43167010 | None:intergenic | 45.0% | |
| GTATGATAACCGAATCAGGG+CGG | - | chr5.2:43167272-43167291 | None:intergenic | 45.0% | |
| GTGTGAGGGAAAAGGAGAAA+AGG | - | chr5.2:43166997-43167016 | None:intergenic | 45.0% | |
| GTTGTTGTGTGTGAGGGAAA+AGG | - | chr5.2:43167005-43167024 | None:intergenic | 45.0% | |
| TAAGCGCGATTATCAGGGAT+AGG | - | chr5.2:43167216-43167235 | None:intergenic | 45.0% | |
| TGAAAGGAAGAAAGCGGATG+AGG | + | chr5.2:43167371-43167390 | MS.gene068827:CDS | 45.0% | |
| TGTTGTTAGGATGGGAGAGA+GGG | - | chr5.2:43167140-43167159 | None:intergenic | 45.0% | |
| TTGTGGAAAAGGGAGAGAGA+GGG | - | chr5.2:43167069-43167088 | None:intergenic | 45.0% | |
| ! | AGCTGGAGAGTTTTGCTGAA+AGG | + | chr5.2:43167355-43167374 | MS.gene068827:CDS | 45.0% |
| ! | ATAGCGATGATGAGGAGTGT+TGG | - | chr5.2:43167039-43167058 | None:intergenic | 45.0% |
| ! | GAAGGATTTGCTTCGAGGTT+TGG | + | chr5.2:43167545-43167564 | MS.gene068827:CDS | 45.0% |
| ! | GGTTTGGGTGAGTTTGAGTT+TGG | + | chr5.2:43167561-43167580 | MS.gene068827:CDS | 45.0% |
| !! | ATGAGGAGTGTTGGTTTGAG+AGG | - | chr5.2:43167030-43167049 | None:intergenic | 45.0% |
| AGAGAGGAGGTTAGGGTATG+TGG | - | chr5.2:43167102-43167121 | None:intergenic | 50.0% | |
| AGAGGAGGTTAGGGTATGTG+GGG | - | chr5.2:43167100-43167119 | None:intergenic | 50.0% | |
| AGAGGCTGTTGTTGTGTGTG+AGG | - | chr5.2:43167012-43167031 | None:intergenic | 50.0% | |
| AGCAGACCACGGTGATTCAT+CGG | - | chr5.2:43167309-43167328 | None:intergenic | 50.0% | |
| CATCAACAACGCTTCCAGAC+GGG | - | chr5.2:43167425-43167444 | None:intergenic | 50.0% | |
| CCATCAACAACGCTTCCAGA+CGG | - | chr5.2:43167426-43167445 | None:intergenic | 50.0% | |
| GAGAGGAGGTTAGGGTATGT+GGG | - | chr5.2:43167101-43167120 | None:intergenic | 50.0% | |
| GAGGATGAGAGAGGAGGTTA+GGG | - | chr5.2:43167109-43167128 | None:intergenic | 50.0% | |
| GAGGCTGTTGTTGTGTGTGA+GGG | - | chr5.2:43167011-43167030 | None:intergenic | 50.0% | |
| GGTGAGGAGGTTGTGGAAAA+GGG | - | chr5.2:43167079-43167098 | None:intergenic | 50.0% | |
| GTTGTGGAAAAGGGAGAGAG+AGG | - | chr5.2:43167070-43167089 | None:intergenic | 50.0% | |
| ! | GAAGGGAGTGATGGAGAAGA+TGG | - | chr5.2:43166973-43166992 | None:intergenic | 50.0% |
| ! | GGATTGGAGTATTACCCGTC+TGG | + | chr5.2:43167408-43167427 | MS.gene068827:CDS | 50.0% |
| ! | GTGTTGTTAGGATGGGAGAG+AGG | - | chr5.2:43167141-43167160 | None:intergenic | 50.0% |
| !! | GGAAGCGTTGTTGATGGACT+CGG | + | chr5.2:43167429-43167448 | MS.gene068827:CDS | 50.0% |
| !! | GGGCTAGCTTGTGTGTTTCT+TGG | + | chr5.2:43167490-43167509 | MS.gene068827:CDS | 50.0% |
| !!! | AGGGATAGGGTTTTGAACGG+CGG | - | chr5.2:43167202-43167221 | None:intergenic | 50.0% |
| ACGGCGTAAGCGCGATTATC+AGG | - | chr5.2:43167222-43167241 | None:intergenic | 55.0% | |
| AGGTTAGGGTATGTGGGGTG+AGG | - | chr5.2:43167095-43167114 | None:intergenic | 55.0% | |
| ATCCAGCCGATGAATCACCG+TGG | + | chr5.2:43167300-43167319 | MS.gene068827:CDS | 55.0% | |
| CAACCAGATCCGCCCTGATT+CGG | + | chr5.2:43167260-43167279 | MS.gene068827:CDS | 55.0% | |
| CGGCGTAAGCGCGATTATCA+GGG | - | chr5.2:43167221-43167240 | None:intergenic | 55.0% | |
| CTGACACCGTCCAAGAATGG+CGG | - | chr5.2:43167457-43167476 | None:intergenic | 55.0% | |
| CTTGAATGCAACCGCCTCGT+CGG | - | chr5.2:43167337-43167356 | None:intergenic | 55.0% | |
| GAGTTCAGGGAGGATGAGAG+AGG | - | chr5.2:43167118-43167137 | None:intergenic | 55.0% | |
| GATGGGAGAGAGGGAGTTCA+GGG | - | chr5.2:43167131-43167150 | None:intergenic | 55.0% | |
| GGAGGATGAGAGAGGAGGTT+AGG | - | chr5.2:43167110-43167129 | None:intergenic | 55.0% | |
| GGGTGAGGAGGTTGTGGAAA+AGG | - | chr5.2:43167080-43167099 | None:intergenic | 55.0% | |
| TAACCGAATCAGGGCGGATC+TGG | - | chr5.2:43167266-43167285 | None:intergenic | 55.0% | |
| TATGTGGGGTGAGGAGGTTG+TGG | - | chr5.2:43167086-43167105 | None:intergenic | 55.0% | |
| TTAGGGTATGTGGGGTGAGG+AGG | - | chr5.2:43167092-43167111 | None:intergenic | 55.0% | |
| TTCAGGGAGGATGAGAGAGG+AGG | - | chr5.2:43167115-43167134 | None:intergenic | 55.0% | |
| !! | CCGTCTGGAAGCGTTGTTGA+TGG | + | chr5.2:43167423-43167442 | MS.gene068827:CDS | 55.0% |
| !! | GGATGGTGGAAGAGAGAGAG+TGG | - | chr5.2:43167173-43167192 | None:intergenic | 55.0% |
| CGAGGCGGTTGCATTCAAGC+TGG | + | chr5.2:43167338-43167357 | MS.gene068827:CDS | 60.0% | |
| CGTCGGAAGACAGCAGACCA+CGG | - | chr5.2:43167320-43167339 | None:intergenic | 60.0% | |
| GACCACGGTGATTCATCGGC+TGG | - | chr5.2:43167305-43167324 | None:intergenic | 60.0% | |
| GCTGAGGAGGATTTCCGCGA+CGG | - | chr5.2:43167241-43167260 | None:intergenic | 60.0% | |
| GGATGGGAGAGAGGGAGTTC+AGG | - | chr5.2:43167132-43167151 | None:intergenic | 60.0% | |
| TAATCGCGCTTACGCCGTCG+CGG | + | chr5.2:43167224-43167243 | MS.gene068827:CDS | 60.0% | |
| TCTGCTGTCTTCCGACGAGG+CGG | + | chr5.2:43167323-43167342 | MS.gene068827:CDS | 60.0% | |
| TGGTCTGCTGTCTTCCGACG+AGG | + | chr5.2:43167320-43167339 | MS.gene068827:CDS | 60.0% | |
| !! | TCGGTGCCGCCATTCTTGGA+CGG | + | chr5.2:43167448-43167467 | MS.gene068827:CDS | 60.0% |
| !!! | TAGGGTTTTGAACGGCGGCG+AGG | - | chr5.2:43167197-43167216 | None:intergenic | 60.0% |
| CAGGGCGGATCTGGTTGCTG+AGG | - | chr5.2:43167257-43167276 | None:intergenic | 65.0% | |
| GGCGGATCTGGTTGCTGAGG+AGG | - | chr5.2:43167254-43167273 | None:intergenic | 65.0% | |
| GGGAGAGAGGGAGTTCAGGG+AGG | - | chr5.2:43167128-43167147 | None:intergenic | 65.0% | |
| TTGAACGGCGGCGAGGAGGA+TGG | - | chr5.2:43167190-43167209 | None:intergenic | 65.0% | |
| !! | GGACTCGGTGCCGCCATTCT+TGG | + | chr5.2:43167444-43167463 | MS.gene068827:CDS | 65.0% |
| !!! | GGTTTTGAACGGCGGCGAGG+AGG | - | chr5.2:43167194-43167213 | None:intergenic | 65.0% |
| AACGGCGGCGAGGAGGATGG+TGG | - | chr5.2:43167187-43167206 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 43166901 | 43167656 | 43166901 | ID=MS.gene068827 |
| chr5.2 | mRNA | 43166901 | 43167656 | 43166901 | ID=MS.gene068827.t1;Parent=MS.gene068827 |
| chr5.2 | exon | 43166901 | 43167656 | 43166901 | ID=MS.gene068827.t1.exon1;Parent=MS.gene068827.t1 |
| chr5.2 | CDS | 43166901 | 43167656 | 43166901 | ID=cds.MS.gene068827.t1;Parent=MS.gene068827.t1 |
| Gene Sequence |
| Protein sequence |
