Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053959.t1 | XP_013453887.1 | 96 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 1.40E-127 | 465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053959.t1 | A0A072UFN7 | 96.0 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 9.8e-128 | 465.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053959 | MS.gene068823 | 0.873208 | 1.76E-67 | -1.69E-46 |
| MS.gene053959 | MS.gene068825 | 0.923558 | 2.27E-89 | -1.69E-46 |
| MS.gene053959 | MS.gene068827 | 0.982015 | 5.13E-154 | -1.69E-46 |
| MS.gene053959 | MS.gene27714 | 0.801026 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053959.t1 | MTR_5g049260 | 96.047 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 7.28e-175 | 481 |
| MS.gene053959.t1 | MTR_5g049270 | 96.047 | 253 | 8 | 1 | 1 | 251 | 1 | 253 | 7.28e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053959.t1 | AT3G25545 | 48.936 | 235 | 105 | 5 | 1 | 222 | 1 | 233 | 5.38e-62 | 196 |
Find 82 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATGGGAGAGAGGGAGTTC+AGG | 0.193955 | 5.3:-40968768 | None:intergenic |
| GGGCTAGCTTGTGTGTTTCT+TGG | 0.231999 | 5.3:+40969129 | MS.gene053959:CDS |
| ACGGCGTAAGCGCGATTATC+AGG | 0.233809 | 5.3:-40968858 | None:intergenic |
| GGACTCGGTGCCGCCATTCT+TGG | 0.292638 | 5.3:+40969083 | MS.gene053959:CDS |
| GGTTTGGGTGAGTTTGAGTT+TGG | 0.295588 | 5.3:+40969200 | MS.gene053959:CDS |
| GGAGGATGAGAGAGGAGGTT+AGG | 0.297528 | 5.3:-40968746 | None:intergenic |
| AAGGATTTGCTTCGAGGTTT+GGG | 0.314069 | 5.3:+40969185 | MS.gene053959:CDS |
| GAGGATGAGAGAGGAGGTTA+GGG | 0.324797 | 5.3:-40968745 | None:intergenic |
| AGAGAGGAGGTTAGGGTATG+TGG | 0.351847 | 5.3:-40968738 | None:intergenic |
| GAAGGATTTGCTTCGAGGTT+TGG | 0.357970 | 5.3:+40969184 | MS.gene053959:CDS |
| TCAAGTATGATAACCGAATC+AGG | 0.365883 | 5.3:-40968912 | None:intergenic |
| GATGGGAGAGAGGGAGTTCA+GGG | 0.377552 | 5.3:-40968767 | None:intergenic |
| GGGTGAGGAGGTTGTGGAAA+AGG | 0.377658 | 5.3:-40968716 | None:intergenic |
| AAGATGGTGTGAAATTGTTT+AGG | 0.389664 | 5.3:-40968593 | None:intergenic |
| TCTTCTTCTAGTAATCTTGA+TGG | 0.395897 | 5.3:-40968570 | None:intergenic |
| GTTTGGGTGAGTTTGAGTTT+GGG | 0.402440 | 5.3:+40969201 | MS.gene053959:CDS |
| CCGTCTGGAAGCGTTGTTGA+TGG | 0.413333 | 5.3:+40969062 | MS.gene053959:CDS |
| AGGTTAGGGTATGTGGGGTG+AGG | 0.413432 | 5.3:-40968731 | None:intergenic |
| GAGAGGAGGTTAGGGTATGT+GGG | 0.431391 | 5.3:-40968737 | None:intergenic |
| TGGATGTTGATGGTGTTGTT+AGG | 0.444194 | 5.3:-40968789 | None:intergenic |
| GTTGTGGAAAAGGGAGAGAG+AGG | 0.451397 | 5.3:-40968706 | None:intergenic |
| TTTCAAATTTGGGAGGAGTA+AGG | 0.452557 | 5.3:+40969241 | MS.gene053959:CDS |
| TAACCGAATCAGGGCGGATC+TGG | 0.453361 | 5.3:-40968902 | None:intergenic |
| GGTGAGGAGGTTGTGGAAAA+GGG | 0.458126 | 5.3:-40968715 | None:intergenic |
| GGAGAAATTGTTGAGTGGAT+TGG | 0.462542 | 5.3:+40969031 | MS.gene053959:CDS |
| TGTTGATGGTGTTGTTAGGA+TGG | 0.464009 | 5.3:-40968785 | None:intergenic |
| GGATGGTGGAAGAGAGAGAG+TGG | 0.466243 | 5.3:-40968809 | None:intergenic |
| CAACCAGATCCGCCCTGATT+CGG | 0.467578 | 5.3:+40968899 | MS.gene053959:CDS |
| TTAGGGTATGTGGGGTGAGG+AGG | 0.469748 | 5.3:-40968728 | None:intergenic |
| TATGTGGGGTGAGGAGGTTG+TGG | 0.473676 | 5.3:-40968722 | None:intergenic |
| AGAAAAGGTGAAGGGAGTGA+TGG | 0.475108 | 5.3:-40968618 | None:intergenic |
| TTGTTGAAGGATTTGCTTCG+AGG | 0.480507 | 5.3:+40969179 | MS.gene053959:CDS |
| AGAGAGAGAGTGGATGTTGA+TGG | 0.485843 | 5.3:-40968799 | None:intergenic |
| TTGAACGGCGGCGAGGAGGA+TGG | 0.486410 | 5.3:-40968826 | None:intergenic |
| GTGTTGTTAGGATGGGAGAG+AGG | 0.495674 | 5.3:-40968777 | None:intergenic |
| GACCACGGTGATTCATCGGC+TGG | 0.499631 | 5.3:-40968941 | None:intergenic |
| GGATTGGAGTATTACCCGTC+TGG | 0.503439 | 5.3:+40969047 | MS.gene053959:CDS |
| AATCTGACACCGTCCAAGAA+TGG | 0.503968 | 5.3:-40969096 | None:intergenic |
| GAGTTCAGGGAGGATGAGAG+AGG | 0.511477 | 5.3:-40968754 | None:intergenic |
| GGCGGATCTGGTTGCTGAGG+AGG | 0.512243 | 5.3:-40968890 | None:intergenic |
| ATAGCGATGATGAGGAGTGT+TGG | 0.523299 | 5.3:-40968675 | None:intergenic |
| GAAGGGAGTGATGGAGAAGA+TGG | 0.529330 | 5.3:-40968609 | None:intergenic |
| AGAGGCTGTTGTTGTGTGTG+AGG | 0.529595 | 5.3:-40968648 | None:intergenic |
| TTGTGGAAAAGGGAGAGAGA+GGG | 0.534591 | 5.3:-40968705 | None:intergenic |
| ATGAGGAGTGTTGGTTTGAG+AGG | 0.539310 | 5.3:-40968666 | None:intergenic |
| AGCAGACCACGGTGATTCAT+CGG | 0.542746 | 5.3:-40968945 | None:intergenic |
| GAGAAGAGATAGCGATGATG+AGG | 0.544694 | 5.3:-40968683 | None:intergenic |
| TGTTGTTAGGATGGGAGAGA+GGG | 0.545857 | 5.3:-40968776 | None:intergenic |
| GTTGTTGTGTGTGAGGGAAA+AGG | 0.547021 | 5.3:-40968641 | None:intergenic |
| TGAAAGGAAGAAAGCGGATG+AGG | 0.548854 | 5.3:+40969010 | MS.gene053959:CDS |
| GGGAAAAGGAGAAAAGGTGA+AGG | 0.553523 | 5.3:-40968627 | None:intergenic |
| ACAACATCTGAATCAAATTG+AGG | 0.556465 | 5.3:-40969152 | None:intergenic |
| GGGAGAGAGGGAGTTCAGGG+AGG | 0.560544 | 5.3:-40968764 | None:intergenic |
| GGAAGCGTTGTTGATGGACT+CGG | 0.567830 | 5.3:+40969068 | MS.gene053959:CDS |
| GAGGCTGTTGTTGTGTGTGA+GGG | 0.570892 | 5.3:-40968647 | None:intergenic |
| GTTGATGGTGTTGTTAGGAT+GGG | 0.571485 | 5.3:-40968784 | None:intergenic |
| AAGCGCGATTATCAGGGATA+GGG | 0.574208 | 5.3:-40968851 | None:intergenic |
| CATCAACAACGCTTCCAGAC+GGG | 0.576803 | 5.3:-40969061 | None:intergenic |
| GTTTGGGTTTAGTGATGATG+AGG | 0.577632 | 5.3:+40969217 | MS.gene053959:CDS |
| TAAGCGCGATTATCAGGGAT+AGG | 0.580517 | 5.3:-40968852 | None:intergenic |
| GCTGAGGAGGATTTCCGCGA+CGG | 0.583968 | 5.3:-40968877 | None:intergenic |
| CGAGGCGGTTGCATTCAAGC+TGG | 0.584066 | 5.3:+40968977 | MS.gene053959:CDS |
| CTTGAATGCAACCGCCTCGT+CGG | 0.585956 | 5.3:-40968973 | None:intergenic |
| GGAAAAGGAGAAAAGGTGAA+GGG | 0.589592 | 5.3:-40968626 | None:intergenic |
| CGGCGTAAGCGCGATTATCA+GGG | 0.590741 | 5.3:-40968857 | None:intergenic |
| TTCAGGGAGGATGAGAGAGG+AGG | 0.592701 | 5.3:-40968751 | None:intergenic |
| TCTTCTAGTAATCTTGATGG+TGG | 0.594403 | 5.3:-40968567 | None:intergenic |
| AACGGCGGCGAGGAGGATGG+TGG | 0.595481 | 5.3:-40968823 | None:intergenic |
| AGAGGAGGTTAGGGTATGTG+GGG | 0.597052 | 5.3:-40968736 | None:intergenic |
| GTGTGAGGGAAAAGGAGAAA+AGG | 0.601573 | 5.3:-40968633 | None:intergenic |
| TCGGTGCCGCCATTCTTGGA+CGG | 0.607388 | 5.3:+40969087 | MS.gene053959:CDS |
| GATGAGGAGAAATTGTTGAG+TGG | 0.611429 | 5.3:+40969026 | MS.gene053959:CDS |
| CCATCAACAACGCTTCCAGA+CGG | 0.615004 | 5.3:-40969062 | None:intergenic |
| CAGGGCGGATCTGGTTGCTG+AGG | 0.621735 | 5.3:-40968893 | None:intergenic |
| CAAGTATGATAACCGAATCA+GGG | 0.627258 | 5.3:-40968911 | None:intergenic |
| TGGTCTGCTGTCTTCCGACG+AGG | 0.661086 | 5.3:+40968959 | MS.gene053959:CDS |
| TCTGCTGTCTTCCGACGAGG+CGG | 0.672935 | 5.3:+40968962 | MS.gene053959:CDS |
| CGTCGGAAGACAGCAGACCA+CGG | 0.686393 | 5.3:-40968956 | None:intergenic |
| TAATCGCGCTTACGCCGTCG+CGG | 0.704779 | 5.3:+40968863 | MS.gene053959:CDS |
| CTGACACCGTCCAAGAATGG+CGG | 0.706584 | 5.3:-40969093 | None:intergenic |
| GTATGATAACCGAATCAGGG+CGG | 0.767199 | 5.3:-40968908 | None:intergenic |
| ATCCAGCCGATGAATCACCG+TGG | 0.786438 | 5.3:+40968939 | MS.gene053959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATGAGGTTTTCAAATTT+GGG | + | chr5.3:40969231-40969250 | MS.gene053959:CDS | 25.0% |
| !!! | GTGTCAGATTTTGAAAATTA+GGG | + | chr5.3:40969109-40969128 | MS.gene053959:CDS | 25.0% |
| AAGATGGTGTGAAATTGTTT+AGG | - | chr5.3:40968596-40968615 | None:intergenic | 30.0% | |
| ACAACATCTGAATCAAATTG+AGG | - | chr5.3:40969155-40969174 | None:intergenic | 30.0% | |
| TCTTCTTCTAGTAATCTTGA+TGG | - | chr5.3:40968573-40968592 | None:intergenic | 30.0% | |
| ! | GATGATGAGGTTTTCAAATT+TGG | + | chr5.3:40969230-40969249 | MS.gene053959:CDS | 30.0% |
| !! | GGTGTCAGATTTTGAAAATT+AGG | + | chr5.3:40969108-40969127 | MS.gene053959:CDS | 30.0% |
| !!! | AGATGTTGTTTTGTTGTTGA+AGG | + | chr5.3:40969166-40969185 | MS.gene053959:CDS | 30.0% |
| CAAGTATGATAACCGAATCA+GGG | - | chr5.3:40968914-40968933 | None:intergenic | 35.0% | |
| TCAAGTATGATAACCGAATC+AGG | - | chr5.3:40968915-40968934 | None:intergenic | 35.0% | |
| TCTTCTAGTAATCTTGATGG+TGG | - | chr5.3:40968570-40968589 | None:intergenic | 35.0% | |
| TTTCAAATTTGGGAGGAGTA+AGG | + | chr5.3:40969241-40969260 | MS.gene053959:CDS | 35.0% | |
| ! | ATGAGGTTTTCAAATTTGGG+AGG | + | chr5.3:40969234-40969253 | MS.gene053959:CDS | 35.0% |
| ! | TTTTGCTGAAAGGAAGAAAG+CGG | + | chr5.3:40969004-40969023 | MS.gene053959:CDS | 35.0% |
| GATGAGGAGAAATTGTTGAG+TGG | + | chr5.3:40969026-40969045 | MS.gene053959:CDS | 40.0% | |
| GGAAAAGGAGAAAAGGTGAA+GGG | - | chr5.3:40968629-40968648 | None:intergenic | 40.0% | |
| GGAGAAATTGTTGAGTGGAT+TGG | + | chr5.3:40969031-40969050 | MS.gene053959:CDS | 40.0% | |
| ! | AAGGATTTGCTTCGAGGTTT+GGG | + | chr5.3:40969185-40969204 | MS.gene053959:CDS | 40.0% |
| ! | GTTTGGGTGAGTTTGAGTTT+GGG | + | chr5.3:40969201-40969220 | MS.gene053959:CDS | 40.0% |
| ! | GTTTGGGTTTAGTGATGATG+AGG | + | chr5.3:40969217-40969236 | MS.gene053959:CDS | 40.0% |
| ! | TTGTTGAAGGATTTGCTTCG+AGG | + | chr5.3:40969179-40969198 | MS.gene053959:CDS | 40.0% |
| !! | GTTGATGGTGTTGTTAGGAT+GGG | - | chr5.3:40968787-40968806 | None:intergenic | 40.0% |
| !! | TGGATGTTGATGGTGTTGTT+AGG | - | chr5.3:40968792-40968811 | None:intergenic | 40.0% |
| !! | TGTTGATGGTGTTGTTAGGA+TGG | - | chr5.3:40968788-40968807 | None:intergenic | 40.0% |
| !!! | ATCAGGGATAGGGTTTTGAA+CGG | - | chr5.3:40968844-40968863 | None:intergenic | 40.0% |
| AAGCGCGATTATCAGGGATA+GGG | - | chr5.3:40968854-40968873 | None:intergenic | 45.0% | |
| AATCTGACACCGTCCAAGAA+TGG | - | chr5.3:40969099-40969118 | None:intergenic | 45.0% | |
| AGAAAAGGTGAAGGGAGTGA+TGG | - | chr5.3:40968621-40968640 | None:intergenic | 45.0% | |
| AGAGAGAGAGTGGATGTTGA+TGG | - | chr5.3:40968802-40968821 | None:intergenic | 45.0% | |
| GAGAAGAGATAGCGATGATG+AGG | - | chr5.3:40968686-40968705 | None:intergenic | 45.0% | |
| GGGAAAAGGAGAAAAGGTGA+AGG | - | chr5.3:40968630-40968649 | None:intergenic | 45.0% | |
| GTATGATAACCGAATCAGGG+CGG | - | chr5.3:40968911-40968930 | None:intergenic | 45.0% | |
| GTGTGAGGGAAAAGGAGAAA+AGG | - | chr5.3:40968636-40968655 | None:intergenic | 45.0% | |
| GTTGTTGTGTGTGAGGGAAA+AGG | - | chr5.3:40968644-40968663 | None:intergenic | 45.0% | |
| TAAGCGCGATTATCAGGGAT+AGG | - | chr5.3:40968855-40968874 | None:intergenic | 45.0% | |
| TGAAAGGAAGAAAGCGGATG+AGG | + | chr5.3:40969010-40969029 | MS.gene053959:CDS | 45.0% | |
| TGTTGTTAGGATGGGAGAGA+GGG | - | chr5.3:40968779-40968798 | None:intergenic | 45.0% | |
| TTGTGGAAAAGGGAGAGAGA+GGG | - | chr5.3:40968708-40968727 | None:intergenic | 45.0% | |
| ! | AGCTGGAGAGTTTTGCTGAA+AGG | + | chr5.3:40968994-40969013 | MS.gene053959:CDS | 45.0% |
| ! | ATAGCGATGATGAGGAGTGT+TGG | - | chr5.3:40968678-40968697 | None:intergenic | 45.0% |
| ! | GAAGGATTTGCTTCGAGGTT+TGG | + | chr5.3:40969184-40969203 | MS.gene053959:CDS | 45.0% |
| ! | GGTTTGGGTGAGTTTGAGTT+TGG | + | chr5.3:40969200-40969219 | MS.gene053959:CDS | 45.0% |
| !! | ATGAGGAGTGTTGGTTTGAG+AGG | - | chr5.3:40968669-40968688 | None:intergenic | 45.0% |
| AGAGAGGAGGTTAGGGTATG+TGG | - | chr5.3:40968741-40968760 | None:intergenic | 50.0% | |
| AGAGGAGGTTAGGGTATGTG+GGG | - | chr5.3:40968739-40968758 | None:intergenic | 50.0% | |
| AGAGGCTGTTGTTGTGTGTG+AGG | - | chr5.3:40968651-40968670 | None:intergenic | 50.0% | |
| AGCAGACCACGGTGATTCAT+CGG | - | chr5.3:40968948-40968967 | None:intergenic | 50.0% | |
| CATCAACAACGCTTCCAGAC+GGG | - | chr5.3:40969064-40969083 | None:intergenic | 50.0% | |
| CCATCAACAACGCTTCCAGA+CGG | - | chr5.3:40969065-40969084 | None:intergenic | 50.0% | |
| GAGAGGAGGTTAGGGTATGT+GGG | - | chr5.3:40968740-40968759 | None:intergenic | 50.0% | |
| GAGGATGAGAGAGGAGGTTA+GGG | - | chr5.3:40968748-40968767 | None:intergenic | 50.0% | |
| GAGGCTGTTGTTGTGTGTGA+GGG | - | chr5.3:40968650-40968669 | None:intergenic | 50.0% | |
| GGTGAGGAGGTTGTGGAAAA+GGG | - | chr5.3:40968718-40968737 | None:intergenic | 50.0% | |
| GTTGTGGAAAAGGGAGAGAG+AGG | - | chr5.3:40968709-40968728 | None:intergenic | 50.0% | |
| ! | GAAGGGAGTGATGGAGAAGA+TGG | - | chr5.3:40968612-40968631 | None:intergenic | 50.0% |
| ! | GGATTGGAGTATTACCCGTC+TGG | + | chr5.3:40969047-40969066 | MS.gene053959:CDS | 50.0% |
| ! | GTGTTGTTAGGATGGGAGAG+AGG | - | chr5.3:40968780-40968799 | None:intergenic | 50.0% |
| !! | GGAAGCGTTGTTGATGGACT+CGG | + | chr5.3:40969068-40969087 | MS.gene053959:CDS | 50.0% |
| !! | GGGCTAGCTTGTGTGTTTCT+TGG | + | chr5.3:40969129-40969148 | MS.gene053959:CDS | 50.0% |
| !!! | AGGGATAGGGTTTTGAACGG+CGG | - | chr5.3:40968841-40968860 | None:intergenic | 50.0% |
| ACGGCGTAAGCGCGATTATC+AGG | - | chr5.3:40968861-40968880 | None:intergenic | 55.0% | |
| AGGTTAGGGTATGTGGGGTG+AGG | - | chr5.3:40968734-40968753 | None:intergenic | 55.0% | |
| ATCCAGCCGATGAATCACCG+TGG | + | chr5.3:40968939-40968958 | MS.gene053959:CDS | 55.0% | |
| CAACCAGATCCGCCCTGATT+CGG | + | chr5.3:40968899-40968918 | MS.gene053959:CDS | 55.0% | |
| CGGCGTAAGCGCGATTATCA+GGG | - | chr5.3:40968860-40968879 | None:intergenic | 55.0% | |
| CTGACACCGTCCAAGAATGG+CGG | - | chr5.3:40969096-40969115 | None:intergenic | 55.0% | |
| CTTGAATGCAACCGCCTCGT+CGG | - | chr5.3:40968976-40968995 | None:intergenic | 55.0% | |
| GAGTTCAGGGAGGATGAGAG+AGG | - | chr5.3:40968757-40968776 | None:intergenic | 55.0% | |
| GATGGGAGAGAGGGAGTTCA+GGG | - | chr5.3:40968770-40968789 | None:intergenic | 55.0% | |
| GGAGGATGAGAGAGGAGGTT+AGG | - | chr5.3:40968749-40968768 | None:intergenic | 55.0% | |
| GGGTGAGGAGGTTGTGGAAA+AGG | - | chr5.3:40968719-40968738 | None:intergenic | 55.0% | |
| TAACCGAATCAGGGCGGATC+TGG | - | chr5.3:40968905-40968924 | None:intergenic | 55.0% | |
| TATGTGGGGTGAGGAGGTTG+TGG | - | chr5.3:40968725-40968744 | None:intergenic | 55.0% | |
| TTAGGGTATGTGGGGTGAGG+AGG | - | chr5.3:40968731-40968750 | None:intergenic | 55.0% | |
| TTCAGGGAGGATGAGAGAGG+AGG | - | chr5.3:40968754-40968773 | None:intergenic | 55.0% | |
| !! | CCGTCTGGAAGCGTTGTTGA+TGG | + | chr5.3:40969062-40969081 | MS.gene053959:CDS | 55.0% |
| !! | GGATGGTGGAAGAGAGAGAG+TGG | - | chr5.3:40968812-40968831 | None:intergenic | 55.0% |
| CGAGGCGGTTGCATTCAAGC+TGG | + | chr5.3:40968977-40968996 | MS.gene053959:CDS | 60.0% | |
| CGTCGGAAGACAGCAGACCA+CGG | - | chr5.3:40968959-40968978 | None:intergenic | 60.0% | |
| GACCACGGTGATTCATCGGC+TGG | - | chr5.3:40968944-40968963 | None:intergenic | 60.0% | |
| GCTGAGGAGGATTTCCGCGA+CGG | - | chr5.3:40968880-40968899 | None:intergenic | 60.0% | |
| GGATGGGAGAGAGGGAGTTC+AGG | - | chr5.3:40968771-40968790 | None:intergenic | 60.0% | |
| TAATCGCGCTTACGCCGTCG+CGG | + | chr5.3:40968863-40968882 | MS.gene053959:CDS | 60.0% | |
| TCTGCTGTCTTCCGACGAGG+CGG | + | chr5.3:40968962-40968981 | MS.gene053959:CDS | 60.0% | |
| TGGTCTGCTGTCTTCCGACG+AGG | + | chr5.3:40968959-40968978 | MS.gene053959:CDS | 60.0% | |
| !! | TCGGTGCCGCCATTCTTGGA+CGG | + | chr5.3:40969087-40969106 | MS.gene053959:CDS | 60.0% |
| !!! | TAGGGTTTTGAACGGCGGCG+AGG | - | chr5.3:40968836-40968855 | None:intergenic | 60.0% |
| CAGGGCGGATCTGGTTGCTG+AGG | - | chr5.3:40968896-40968915 | None:intergenic | 65.0% | |
| GGCGGATCTGGTTGCTGAGG+AGG | - | chr5.3:40968893-40968912 | None:intergenic | 65.0% | |
| GGGAGAGAGGGAGTTCAGGG+AGG | - | chr5.3:40968767-40968786 | None:intergenic | 65.0% | |
| TTGAACGGCGGCGAGGAGGA+TGG | - | chr5.3:40968829-40968848 | None:intergenic | 65.0% | |
| !! | GGACTCGGTGCCGCCATTCT+TGG | + | chr5.3:40969083-40969102 | MS.gene053959:CDS | 65.0% |
| !!! | GGTTTTGAACGGCGGCGAGG+AGG | - | chr5.3:40968833-40968852 | None:intergenic | 65.0% |
| AACGGCGGCGAGGAGGATGG+TGG | - | chr5.3:40968826-40968845 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 40968540 | 40969295 | 40968540 | ID=MS.gene053959 |
| chr5.3 | mRNA | 40968540 | 40969295 | 40968540 | ID=MS.gene053959.t1;Parent=MS.gene053959 |
| chr5.3 | exon | 40968540 | 40969295 | 40968540 | ID=MS.gene053959.t1.exon1;Parent=MS.gene053959.t1 |
| chr5.3 | CDS | 40968540 | 40969295 | 40968540 | ID=cds.MS.gene053959.t1;Parent=MS.gene053959.t1 |
| Gene Sequence |
| Protein sequence |
