AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069178

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069178.t1 MTR_5g030770 97.538 325 8 0 1 325 1 325 0.0 649
MS.gene069178.t1 MTR_5g030770 95.692 325 8 1 1 325 1 319 0.0 630
MS.gene069178.t1 MTR_7g076840 71.096 301 16 6 5 305 2 231 4.34e-127 363
MS.gene069178.t1 MTR_3g111290 51.585 347 136 14 1 325 1 337 7.42e-89 270
MS.gene069178.t1 MTR_3g498695 46.798 203 79 7 142 322 287 482 5.30e-41 149
MS.gene069178.t1 MTR_3g498695 45.500 200 87 4 142 322 287 483 9.97e-41 148
MS.gene069178.t1 MTR_7g083900 44.211 190 85 3 154 322 284 473 1.18e-40 148
MS.gene069178.t1 MTR_7g083900 44.560 193 81 5 154 322 284 474 6.45e-40 146
MS.gene069178.t1 MTR_3g030700 41.361 191 93 6 141 316 184 370 2.02e-34 129
MS.gene069178.t1 MTR_2g081040 39.785 186 93 5 154 320 175 360 3.80e-33 125
MS.gene069178.t1 MTR_7g065690 48.000 150 36 6 30 179 26 133 2.18e-32 117
MS.gene069178.t1 MTR_3g104100 39.560 182 91 5 154 316 193 374 2.37e-32 124
MS.gene069178.t1 MTR_1g112680 28.505 214 105 5 144 315 305 512 1.94e-19 89.4
MS.gene069178.t1 MTR_5g014640 28.804 184 121 3 142 315 140 323 6.19e-16 77.8
MS.gene069178.t1 MTR_1g072320 29.851 201 114 4 140 314 449 648 4.21e-15 76.3
MS.gene069178.t1 MTR_4g092700 22.635 296 186 9 32 314 60 325 1.51e-14 73.6
MS.gene069178.t1 MTR_8g064700 29.231 195 110 5 142 316 230 416 1.56e-14 74.3
MS.gene069178.t1 MTR_8g024790 31.073 177 102 7 154 318 289 457 4.80e-14 72.8
MS.gene069178.t1 MTR_2g084280 30.682 176 103 5 149 311 126 295 5.25e-14 72.0
MS.gene069178.t1 MTR_2g038040 33.544 158 83 4 152 287 48 205 1.94e-13 69.3
MS.gene069178.t1 MTR_4g057270 53.448 58 27 0 155 212 148 205 2.22e-13 70.5
MS.gene069178.t1 MTR_5g030430 28.221 163 97 2 153 295 490 652 2.33e-13 71.2
MS.gene069178.t1 MTR_8g027495 29.167 144 93 3 149 288 453 591 2.43e-13 71.2
MS.gene069178.t1 MTR_2g104560 26.984 189 117 5 145 316 41 225 1.01e-12 67.0
MS.gene069178.t1 MTR_2g010450 27.950 161 100 4 147 291 162 322 1.45e-12 68.2
MS.gene069178.t1 MTR_5g014520 29.801 151 97 2 147 288 148 298 2.71e-12 67.0
MS.gene069178.t1 MTR_7g117670 27.007 137 99 1 153 288 399 535 3.47e-12 67.4
MS.gene069178.t1 MTR_8g067280 28.750 160 94 3 153 292 459 618 3.60e-12 67.4
MS.gene069178.t1 MTR_8g024770 30.872 149 86 4 154 287 277 423 4.92e-12 66.6
MS.gene069178.t1 MTR_7g096350 34.737 95 60 1 153 245 352 446 1.35e-11 65.5
MS.gene069178.t1 MTR_4g066460 32.500 160 92 4 143 291 142 296 3.59e-11 63.5
MS.gene069178.t1 MTR_6g047550 41.860 86 44 3 133 214 148 231 3.90e-11 63.2
MS.gene069178.t1 MTR_3g070970 28.205 195 117 7 128 314 51 230 9.92e-11 61.6
MS.gene069178.t1 MTR_4g066380 43.478 69 39 0 143 211 140 208 9.95e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069178.t1 AT5G65640 48.361 366 133 11 1 325 1 351 4.10e-86 263
MS.gene069178.t1 AT5G10570 47.953 342 121 12 11 325 4 315 6.13e-76 236
MS.gene069178.t1 AT1G12860 46.739 184 83 3 154 322 265 448 1.77e-41 150
MS.gene069178.t1 AT3G26744 45.745 188 83 2 154 322 305 492 1.69e-40 148
MS.gene069178.t1 AT3G26744 45.745 188 83 2 154 322 305 492 1.69e-40 148
MS.gene069178.t1 AT3G26744 45.745 188 83 2 154 322 305 492 1.69e-40 148
MS.gene069178.t1 AT1G12860 48.750 160 67 3 154 298 265 424 2.44e-37 138
MS.gene069178.t1 AT5G65640 41.608 286 114 12 1 247 1 272 2.51e-37 135
MS.gene069178.t1 AT3G26744 47.561 164 67 2 154 298 305 468 1.35e-36 137
MS.gene069178.t1 AT2G16910 35.149 202 94 7 155 321 313 512 4.70e-21 94.4
MS.gene069178.t1 AT4G09820 31.792 173 103 5 145 316 352 510 6.03e-18 84.7
MS.gene069178.t1 AT4G29930 36.232 138 77 4 155 286 53 185 2.68e-15 74.3
MS.gene069178.t1 AT4G29930 33.571 140 81 3 155 286 53 188 3.71e-15 73.9
MS.gene069178.t1 AT4G29930 35.036 137 80 3 155 286 53 185 3.88e-15 73.9
MS.gene069178.t1 AT5G46760 30.220 182 108 5 153 319 412 589 7.85e-15 75.5
MS.gene069178.t1 AT2G46510 35.849 106 57 2 153 257 392 487 1.95e-14 74.3
MS.gene069178.t1 AT4G29930 51.667 60 29 0 155 214 53 112 2.65e-14 70.5
MS.gene069178.t1 AT4G17880 30.818 159 99 2 153 301 413 570 5.03e-14 73.2
MS.gene069178.t1 AT4G29930 51.667 60 29 0 155 214 53 112 7.49e-14 70.9
MS.gene069178.t1 AT4G29930 51.667 60 29 0 155 214 53 112 9.22e-14 70.5
MS.gene069178.t1 AT4G29930 51.667 60 29 0 155 214 53 112 9.22e-14 70.5
MS.gene069178.t1 AT4G37850 27.273 209 120 6 102 286 93 293 5.90e-13 68.9
MS.gene069178.t1 AT4G37850 27.273 209 120 6 102 286 93 293 5.90e-13 68.9
MS.gene069178.t1 AT2G28160 44.444 72 35 1 141 212 121 187 1.43e-12 67.8
MS.gene069178.t1 AT2G28160 44.444 72 35 1 141 212 121 187 1.43e-12 67.8
MS.gene069178.t1 AT1G63650 31.056 161 79 5 157 288 406 563 4.88e-12 67.0
MS.gene069178.t1 AT1G63650 31.056 161 79 5 157 288 406 563 4.88e-12 67.0
MS.gene069178.t1 AT1G63650 31.056 161 79 5 157 288 406 563 4.88e-12 67.0
MS.gene069178.t1 AT5G57150 28.221 163 99 1 155 299 53 215 7.08e-12 65.1
MS.gene069178.t1 AT2G22760 28.105 153 94 4 157 295 120 270 7.12e-12 65.5
MS.gene069178.t1 AT5G57150 29.139 151 89 1 155 287 53 203 8.54e-12 64.3
MS.gene069178.t1 AT5G57150 28.395 162 98 1 155 298 54 215 9.02e-12 64.3
MS.gene069178.t1 AT5G57150 29.139 151 89 1 155 287 54 204 9.84e-12 63.9
MS.gene069178.t1 AT2G22760 28.105 153 94 4 157 295 120 270 1.01e-11 65.1
MS.gene069178.t1 AT1G10610 42.308 78 43 1 151 228 229 304 1.37e-11 65.5
MS.gene069178.t1 AT1G10610 42.308 78 43 1 151 228 162 237 1.56e-11 65.1
MS.gene069178.t1 AT1G10610 42.308 78 43 1 151 228 259 334 1.77e-11 65.1
MS.gene069178.t1 AT5G57150 29.139 151 89 2 155 287 54 204 1.89e-11 63.9
MS.gene069178.t1 AT4G16430 36.905 84 50 1 157 237 321 404 2.24e-11 65.1
MS.gene069178.t1 AT1G32640 45.763 59 32 0 153 211 449 507 5.50e-11 63.9

Find 66 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCACCTTGCTGATCTT+AGG 0.222682 5.3:+19868131 None:intergenic
AGGCTGTCCTTCAACCCTTT+TGG 0.223211 5.3:+19868229 None:intergenic
AGTGATTGCTTTATCTCTTC+AGG 0.235636 5.3:+19866955 None:intergenic
TTATCATACCCTTATCTTGA+TGG 0.263234 5.3:-19868440 MS.gene069178:CDS
CATAGATTTGAATGTCCTTA+TGG 0.286074 5.3:-19868479 MS.gene069178:CDS
TTCCCATGTGTTTAGGTAGA+TGG 0.318517 5.3:-19866997 MS.gene069178:intron
TTTACCACAACAGGAAAGTA+TGG 0.321693 5.3:-19868381 MS.gene069178:CDS
AAACCGTTTAGAAATTTCTA+AGG 0.325538 5.3:-19867707 MS.gene069178:CDS
AGATAAAGCAATCACTATTC+AGG 0.330105 5.3:-19866948 MS.gene069178:CDS
TTTCTTACCATTACTTCATT+TGG 0.330225 5.3:+19867676 None:intergenic
GAGTCAAAGGTCCAACCATT+AGG 0.336189 5.3:+19868572 None:intergenic
CAGGAAAGTATGGAAGAGTT+TGG 0.367985 5.3:-19868371 MS.gene069178:CDS
CTTTCCTGTTGTGGTAAAAC+TGG 0.371402 5.3:+19868386 None:intergenic
CATTCAAATCTATGGTCTAA+TGG 0.372381 5.3:+19868488 None:intergenic
TAGTAAGTTACAAGAAGAAA+TGG 0.377782 5.3:-19867752 MS.gene069178:CDS
CAGTAACAATCCTGGCTTTG+TGG 0.397442 5.3:+19867501 None:intergenic
GAATCACCTTGCTGATCTTA+GGG 0.398992 5.3:+19868132 None:intergenic
AATGAGTTACTACTCCCTAA+TGG 0.409168 5.3:-19868587 MS.gene069178:CDS
CATAAGGACATTCAAATCTA+TGG 0.410090 5.3:+19868480 None:intergenic
ACAGCCTTCAAAGAATCTTA+TGG 0.411193 5.3:-19868213 MS.gene069178:CDS
ATGGACAGGACATCAATTCT+AGG 0.415879 5.3:-19867814 MS.gene069178:CDS
ATCTGCTGTGCCACAAAGCC+AGG 0.421676 5.3:-19867511 MS.gene069178:CDS
GCAAATGAAGGGTTTAAAGA+TGG 0.426120 5.3:+19868524 None:intergenic
CTATTCAGGAATGCAGGTTA+TGG 0.429722 5.3:-19866934 MS.gene069178:CDS
GTGATTGCTTTATCTCTTCA+GGG 0.432133 5.3:+19866956 None:intergenic
GAAGAAAGCGTTTGAATGAC+AGG 0.437266 5.3:-19868178 MS.gene069178:CDS
TCAGCCATAAGATTCTTTGA+AGG 0.448137 5.3:+19868209 None:intergenic
AGTCAAAGGTCCAACCATTA+GGG 0.456761 5.3:+19868573 None:intergenic
ACTCCTTAGAAATTTCTAAA+CGG 0.465492 5.3:+19867704 None:intergenic
AAAATGGAACTTTCTCAACT+TGG 0.469304 5.3:-19868671 MS.gene069178:CDS
ATGACAGGCTTTCCATGCTT+AGG 0.479470 5.3:-19868163 MS.gene069178:CDS
GCCAAATCCAAAAGGGTTGA+AGG 0.482278 5.3:-19868236 MS.gene069178:CDS
ACTGAGAATCCATCAAGATA+AGG 0.498561 5.3:+19868431 None:intergenic
CTGAGAATCCATCAAGATAA+GGG 0.499837 5.3:+19868432 None:intergenic
TAAGTTACAAGAAGAAATGG+AGG 0.505778 5.3:-19867749 MS.gene069178:CDS
ACATGAAAGAGCTTCTAGAA+AGG 0.506584 5.3:-19867777 MS.gene069178:CDS
TCTTCCATACTTTCCTGTTG+TGG 0.509860 5.3:+19868377 None:intergenic
AGATACTGATTCTTGTGTCC+TGG 0.512516 5.3:+19867530 None:intergenic
ACATGGAATACTTTATCCAC+TGG 0.522465 5.3:-19868614 MS.gene069178:CDS
CAATCACTATTCAGGAATGC+AGG 0.523750 5.3:-19866940 MS.gene069178:CDS
TGATGTTGAGAGGAGAGACC+AGG 0.532244 5.3:-19867548 MS.gene069178:CDS
TTCAGGAATGCAGGTTATGG+TGG 0.533157 5.3:-19866931 MS.gene069178:CDS
GATGATGCATCAGTTCCATA+AGG 0.540398 5.3:+19868464 None:intergenic
GTTAAAGCCAAATGAAGTAA+TGG 0.545862 5.3:-19867683 MS.gene069178:CDS
AGAATCTTATGGCTGAAAGA+AGG 0.549094 5.3:-19868202 MS.gene069178:CDS
TTATGGTGGGAGGTGTCTCT+AGG 0.550677 5.3:-19866917 None:intergenic
TTGTTGGAAGTGAGAACAAG+AGG 0.557413 5.3:-19868346 MS.gene069178:CDS
AGTTACTACTCCCTAATGGT+TGG 0.559379 5.3:-19868583 MS.gene069178:CDS
CAAGAAGAAATGGAGGAAGA+AGG 0.564987 5.3:-19867742 MS.gene069178:CDS
GTGAACACATTAGAAGCATT+AGG 0.568569 5.3:-19867472 MS.gene069178:CDS
ACTGTTGACAGTAACAATCC+TGG 0.569200 5.3:+19867493 None:intergenic
GTTGAGAATGAAGCAAATGA+AGG 0.578645 5.3:+19868512 None:intergenic
TAAAATCAGCTGCAAAGTTG+AGG 0.582223 5.3:-19868312 MS.gene069178:CDS
TAACACACTGGTGAATCTCA+AGG 0.606173 5.3:+19867449 None:intergenic
TCAGGAATGCAGGTTATGGT+GGG 0.610095 5.3:-19866930 MS.gene069178:CDS
TTGAGAATGAAGCAAATGAA+GGG 0.614806 5.3:+19868513 None:intergenic
AATGGTAAGAAATTCCCCTA+AGG 0.619045 5.3:-19867665 MS.gene069178:intron
TGAAACTGCTTATAACACAC+TGG 0.622427 5.3:+19867437 None:intergenic
GGTGCTGAATCATCAAACTC+AGG 0.624297 5.3:+19868407 None:intergenic
AGGGACAATTGACCTAAGCA+TGG 0.627542 5.3:+19868151 None:intergenic
TAGTAACTCATTCAAACCAG+TGG 0.629735 5.3:+19868598 None:intergenic
GGAAATAAACCATACCTTAG+GGG 0.645486 5.3:+19867651 None:intergenic
GGAATGCAGGTTATGGTGGG+AGG 0.648346 5.3:-19866927 MS.gene069178:CDS
ATTGCAAGCATCTTGCTCAG+AGG 0.660283 5.3:-19867404 MS.gene069178:intron
TAGTTCCAAGAAAAGACACA+TGG 0.690258 5.3:-19868631 MS.gene069178:CDS
AATTGTCCCTAAGATCAGCA+AGG 0.709185 5.3:-19868138 MS.gene069178:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTTATTCATAAACT+TGG + chr5.3:19867987-19868006 None:intergenic 15.0%
!! TTATGAATAAATGTAATGAA+TGG - chr5.3:19867990-19868009 MS.gene069178:intron 15.0%
!!! AAAATGTAAATTTTGTAAGA+TGG - chr5.3:19867753-19867772 MS.gene069178:CDS 15.0%
!!! CATTTTTGTCAAATTATTAT+CGG - chr5.3:19867564-19867583 MS.gene069178:intron 15.0%
!! ATAATTGATCATGAAAAGTT+TGG - chr5.3:19868307-19868326 MS.gene069178:CDS 20.0%
!!! ATGTATGTGTGTTTTATTTT+TGG - chr5.3:19867640-19867659 MS.gene069178:intron 20.0%
!!! CGTAGTTTTTAATAAAATGA+CGG + chr5.3:19868268-19868287 None:intergenic 20.0%
! AAACCGTTTAGAAATTTCTA+AGG - chr5.3:19867879-19867898 MS.gene069178:intron 25.0%
! AATCGAATGTAATAAATTCC+TGG + chr5.3:19868426-19868445 None:intergenic 25.0%
! AATTGACTAGCATTTGTATT+TGG - chr5.3:19867698-19867717 MS.gene069178:CDS 25.0%
! ACTCCTTAGAAATTTCTAAA+CGG + chr5.3:19867885-19867904 None:intergenic 25.0%
! TAGTAAGTTACAAGAAGAAA+TGG - chr5.3:19867834-19867853 MS.gene069178:intron 25.0%
! TGGCGAAAAATTAATTATAG+AGG + chr5.3:19868406-19868425 None:intergenic 25.0%
! TTTCTTACCATTACTTCATT+TGG + chr5.3:19867913-19867932 None:intergenic 25.0%
!! ATTTTCATCAAATGAGTCAA+AGG + chr5.3:19867030-19867049 None:intergenic 25.0%
!! TCTATAATTAATTTTTCGCC+AGG - chr5.3:19868405-19868424 MS.gene069178:CDS 25.0%
!!! ACATTCGATTCAATTTTAGT+TGG - chr5.3:19868436-19868455 MS.gene069178:CDS 25.0%
AACCATGCAAACAATTATTG+AGG + chr5.3:19868533-19868552 None:intergenic 30.0%
AAGGAAATAAACCATACCTT+AGG + chr5.3:19867940-19867959 None:intergenic 30.0%
AGAAAAAAGCCAAATCCAAA+AGG - chr5.3:19867342-19867361 MS.gene069178:intron 30.0%
AGATAAAGCAATCACTATTC+AGG - chr5.3:19868638-19868657 MS.gene069178:CDS 30.0%
AGGAAATAAACCATACCTTA+GGG + chr5.3:19867939-19867958 None:intergenic 30.0%
CATAAGGACATTCAAATCTA+TGG + chr5.3:19867109-19867128 None:intergenic 30.0%
CATAGATTTGAATGTCCTTA+TGG - chr5.3:19867107-19867126 MS.gene069178:intron 30.0%
CATATTATTCCCATGTGTTT+AGG - chr5.3:19868582-19868601 MS.gene069178:CDS 30.0%
CATTCAAATCTATGGTCTAA+TGG + chr5.3:19867101-19867120 None:intergenic 30.0%
GAAAAAAGCCAAATCCAAAA+GGG - chr5.3:19867343-19867362 MS.gene069178:intron 30.0%
GATTATGCATTAGTTGTTCA+AGG + chr5.3:19867959-19867978 None:intergenic 30.0%
GTTAAAGCCAAATGAAGTAA+TGG - chr5.3:19867903-19867922 MS.gene069178:intron 30.0%
TAAGTTACAAGAAGAAATGG+AGG - chr5.3:19867837-19867856 MS.gene069178:intron 30.0%
TAGTCAATTGTAGTCAATGA+AGG + chr5.3:19867687-19867706 None:intergenic 30.0%
TTATCATACCCTTATCTTGA+TGG - chr5.3:19867146-19867165 MS.gene069178:intron 30.0%
TTGAGAATGAAGCAAATGAA+GGG + chr5.3:19867076-19867095 None:intergenic 30.0%
! ATATCTTCAATCTGAAGTGT+CGG + chr5.3:19867533-19867552 None:intergenic 30.0%
! GAAACTCCAGTTTTTAACAT+GGG - chr5.3:19867308-19867327 MS.gene069178:intron 30.0%
! GTAAATTTTGTAAGATGGAC+AGG - chr5.3:19867758-19867777 MS.gene069178:CDS 30.0%
! TGAAACTCCAGTTTTTAACA+TGG - chr5.3:19867307-19867326 MS.gene069178:intron 30.0%
!! TTTTTCAGTTTGATGTTGAG+AGG - chr5.3:19868028-19868047 MS.gene069178:intron 30.0%
!!! TAGTCTTTTTTTTGGTTCTG+CGG + chr5.3:19868506-19868525 None:intergenic 30.0%
AATGAGTTACTACTCCCTAA+TGG - chr5.3:19866999-19867018 MS.gene069178:intron 35.0%
AATGGTAAGAAATTCCCCTA+AGG - chr5.3:19867921-19867940 MS.gene069178:intron 35.0%
ACAGCCTTCAAAGAATCTTA+TGG - chr5.3:19867373-19867392 MS.gene069178:intron 35.0%
ACATGGAATACTTTATCCAC+TGG - chr5.3:19866972-19866991 MS.gene069178:CDS 35.0%
ACTGAGAATCCATCAAGATA+AGG + chr5.3:19867158-19867177 None:intergenic 35.0%
AGAATCTTATGGCTGAAAGA+AGG - chr5.3:19867384-19867403 MS.gene069178:intron 35.0%
AGTAAAACCCTAAGCATGTT+CGG - chr5.3:19868207-19868226 MS.gene069178:CDS 35.0%
AGTGATTGCTTTATCTCTTC+AGG + chr5.3:19868634-19868653 None:intergenic 35.0%
CACAAACCCATGTTAAAAAC+TGG + chr5.3:19867317-19867336 None:intergenic 35.0%
CTGAGAATCCATCAAGATAA+GGG + chr5.3:19867157-19867176 None:intergenic 35.0%
GCAAATGAAGGGTTTAAAGA+TGG + chr5.3:19867065-19867084 None:intergenic 35.0%
GGAAATAAACCATACCTTAG+GGG + chr5.3:19867938-19867957 None:intergenic 35.0%
GTGATTGCTTTATCTCTTCA+GGG + chr5.3:19868633-19868652 None:intergenic 35.0%
GTGTGTATGTTTATGTTGTC+TGG - chr5.3:19867505-19867524 MS.gene069178:CDS 35.0%
GTTGAGAATGAAGCAAATGA+AGG + chr5.3:19867077-19867096 None:intergenic 35.0%
TAAAATCAGCTGCAAAGTTG+AGG - chr5.3:19867274-19867293 MS.gene069178:intron 35.0%
TAAGAAATTCCCCTAAGGTA+TGG - chr5.3:19867926-19867945 MS.gene069178:intron 35.0%
TAGTAACTCATTCAAACCAG+TGG + chr5.3:19866991-19867010 None:intergenic 35.0%
TAGTTCCAAGAAAAGACACA+TGG - chr5.3:19866955-19866974 MS.gene069178:CDS 35.0%
TATCAATCCGAACATGCTTA+GGG + chr5.3:19868217-19868236 None:intergenic 35.0%
TCAGCCATAAGATTCTTTGA+AGG + chr5.3:19867380-19867399 None:intergenic 35.0%
TGAAACTGCTTATAACACAC+TGG + chr5.3:19868152-19868171 None:intergenic 35.0%
TTTACCACAACAGGAAAGTA+TGG - chr5.3:19867205-19867224 MS.gene069178:intron 35.0%
! AACTACGCTTTTGAGCTTTA+AGG - chr5.3:19868281-19868300 MS.gene069178:CDS 35.0%
! ACATGAAAGAGCTTCTAGAA+AGG - chr5.3:19867809-19867828 MS.gene069178:CDS 35.0%
! GTATTCCATGTGTCTTTTCT+TGG + chr5.3:19866963-19866982 None:intergenic 35.0%
! GTTTTTAACATGGGTTTGTG+TGG - chr5.3:19867317-19867336 MS.gene069178:intron 35.0%
!! ACTACGCTTTTGAGCTTTAA+GGG - chr5.3:19868282-19868301 MS.gene069178:CDS 35.0%
!! GTGAACACATTAGAAGCATT+AGG - chr5.3:19868114-19868133 MS.gene069178:intron 35.0%
!! TTCTCAACTTGGTTTTCTTG+AGG - chr5.3:19866926-19866945 MS.gene069178:CDS 35.0%
!!! ATGGAAGAGTTTGGTTTTGT+TGG - chr5.3:19867224-19867243 MS.gene069178:intron 35.0%
!!! GAGGCGAATAGTCTTTTTTT+TGG + chr5.3:19868514-19868533 None:intergenic 35.0%
AATTGTCCCTAAGATCAGCA+AGG - chr5.3:19867448-19867467 MS.gene069178:CDS 40.0%
ACTGTTGACAGTAACAATCC+TGG + chr5.3:19868096-19868115 None:intergenic 40.0%
AGTCAAAGGTCCAACCATTA+GGG + chr5.3:19867016-19867035 None:intergenic 40.0%
AGTTACTACTCCCTAATGGT+TGG - chr5.3:19867003-19867022 MS.gene069178:intron 40.0%
ATGGACAGGACATCAATTCT+AGG - chr5.3:19867772-19867791 MS.gene069178:CDS 40.0%
CAAGAAGAAATGGAGGAAGA+AGG - chr5.3:19867844-19867863 MS.gene069178:intron 40.0%
CAATCACTATTCAGGAATGC+AGG - chr5.3:19868646-19868665 MS.gene069178:CDS 40.0%
CGCCTCAATAATTGTTTGCA+TGG - chr5.3:19868528-19868547 MS.gene069178:CDS 40.0%
CTATCAATCCGAACATGCTT+AGG + chr5.3:19868218-19868237 None:intergenic 40.0%
CTATTCAGGAATGCAGGTTA+TGG - chr5.3:19868652-19868671 MS.gene069178:CDS 40.0%
CTTTCCTGTTGTGGTAAAAC+TGG + chr5.3:19867203-19867222 None:intergenic 40.0%
GAATCACCTTGCTGATCTTA+GGG + chr5.3:19867457-19867476 None:intergenic 40.0%
GACCATCTACCTAAACACAT+GGG + chr5.3:19868594-19868613 None:intergenic 40.0%
GATGATGCATCAGTTCCATA+AGG + chr5.3:19867125-19867144 None:intergenic 40.0%
TAACACACTGGTGAATCTCA+AGG + chr5.3:19868140-19868159 None:intergenic 40.0%
TCGAGTATTAGTGTTGTGTC+TGG - chr5.3:19867589-19867608 MS.gene069178:intron 40.0%
TCTTCCATACTTTCCTGTTG+TGG + chr5.3:19867212-19867231 None:intergenic 40.0%
TGAATCACCTTGCTGATCTT+AGG + chr5.3:19867458-19867477 None:intergenic 40.0%
TGACCATCTACCTAAACACA+TGG + chr5.3:19868595-19868614 None:intergenic 40.0%
TTCCCATGTGTTTAGGTAGA+TGG - chr5.3:19868589-19868608 MS.gene069178:CDS 40.0%
TTGTTGGAAGTGAGAACAAG+AGG - chr5.3:19867240-19867259 MS.gene069178:intron 40.0%
! CAGGAAAGTATGGAAGAGTT+TGG - chr5.3:19867215-19867234 MS.gene069178:intron 40.0%
! TCCTTCAACCCTTTTGGATT+TGG + chr5.3:19867354-19867373 None:intergenic 40.0%
!! AGATACTGATTCTTGTGTCC+TGG + chr5.3:19868059-19868078 None:intergenic 40.0%
!! GAAGAAAGCGTTTGAATGAC+AGG - chr5.3:19867408-19867427 MS.gene069178:CDS 40.0%
AGGGACAATTGACCTAAGCA+TGG + chr5.3:19867438-19867457 None:intergenic 45.0%
ATGACAGGCTTTCCATGCTT+AGG - chr5.3:19867423-19867442 MS.gene069178:CDS 45.0%
ATTGCAAGCATCTTGCTCAG+AGG - chr5.3:19868182-19868201 MS.gene069178:CDS 45.0%
GAGTCAAAGGTCCAACCATT+AGG + chr5.3:19867017-19867036 None:intergenic 45.0%
GCCAAATCCAAAAGGGTTGA+AGG - chr5.3:19867350-19867369 MS.gene069178:intron 45.0%
TCAGGAATGCAGGTTATGGT+GGG - chr5.3:19868656-19868675 MS.gene069178:CDS 45.0%
TTCAGGAATGCAGGTTATGG+TGG - chr5.3:19868655-19868674 MS.gene069178:CDS 45.0%
! AGCACCAGTTTTACCACAAC+AGG - chr5.3:19867196-19867215 MS.gene069178:intron 45.0%
! GGTGCTGAATCATCAAACTC+AGG + chr5.3:19867182-19867201 None:intergenic 45.0%
!! CAGTAACAATCCTGGCTTTG+TGG + chr5.3:19868088-19868107 None:intergenic 45.0%
TGATGTTGAGAGGAGAGACC+AGG - chr5.3:19868038-19868057 MS.gene069178:intron 50.0%
! AGGCTGTCCTTCAACCCTTT+TGG + chr5.3:19867360-19867379 None:intergenic 50.0%
ATCTGCTGTGCCACAAAGCC+AGG - chr5.3:19868075-19868094 MS.gene069178:intron 55.0%
! GGAATGCAGGTTATGGTGGG+AGG - chr5.3:19868659-19868678 MS.gene069178:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 19866918 19868690 19866918 ID=MS.gene069178
chr5.3 mRNA 19866918 19868690 19866918 ID=MS.gene069178.t1;Parent=MS.gene069178
chr5.3 exon 19868139 19868690 19868139 ID=MS.gene069178.t1.exon1;Parent=MS.gene069178.t1
chr5.3 CDS 19868139 19868690 19868139 ID=cds.MS.gene069178.t1;Parent=MS.gene069178.t1
chr5.3 exon 19867666 19867836 19867666 ID=MS.gene069178.t1.exon2;Parent=MS.gene069178.t1
chr5.3 CDS 19867666 19867836 19867666 ID=cds.MS.gene069178.t1;Parent=MS.gene069178.t1
chr5.3 exon 19867405 19867572 19867405 ID=MS.gene069178.t1.exon3;Parent=MS.gene069178.t1
chr5.3 CDS 19867405 19867572 19867405 ID=cds.MS.gene069178.t1;Parent=MS.gene069178.t1
chr5.3 exon 19866918 19867004 19866918 ID=MS.gene069178.t1.exon4;Parent=MS.gene069178.t1
chr5.3 CDS 19866918 19867004 19866918 ID=cds.MS.gene069178.t1;Parent=MS.gene069178.t1
Gene Sequence

>MS.gene069178

ATGGAACTTTCTCAACTTGGTTTTCTTGAGGAGCTACTAGTTCCAAGAAAAGACACATGGAATACTTTATCCACTGGTTTGAATGAGTTACTACTCCCTAATGGTTGGACCTTTGACTCATTTGATGAAAATCTTCTCATCAATCCATCTTTAAACCCTTCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCATCATCATTATCATACCCTTATCTTGATGGATTCTCAGTTCCTGAGTTTGATGATTCAGCACCAGTTTTACCACAACAGGAAAGTATGGAAGAGTTTGGTTTTGTTGGAAGTGAGAACAAGAGGTTTCAAGAGAGTAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAAACTCCAGTTTTTAACATGGGTTTGTGTGGTGAGAAAAAAGCCAAATCCAAAAGGGTTGAAGGACAGCCTTCAAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGCAAGGTGATTCAATATATATAATGTGTATGTATGTTTGTGTGTGTATGTTTATGTTGTCTGGCTCCGACACTTCAGATTGAAGATATGTTCAGTTATTCATTTTTGTCAAATTATTATCGGTGTCGAGTATTAGTGTTGTGTCTGGTGTTTATGTAAGTGCTCATAGTGTGTATATGTATGTGTGTTTTATTTTTGGTACAAATGTTTGTGTTTTTTACCTTCATTGACTACAATTGACTAGCATTTGTATTTGGTGTTTATGTAAGTGCTCATTTGAACTAACAAGAAAATGTAAATTTTGTAAGATGGACAGGACATCAATTCTAGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAGTAAGTTACAAGAAGAAATGGAGGAAGAAGGAACAAATCAGATAAACCGTTTAGAAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCTAAGGTATGGTTTATTTCCTTGAACAACTAATGCATAATCATAGACCAAGTTTATGAATAAATGTAATGAATGGAATGTTTTCTTTTTCTTTTTCAGTTTGATGTTGAGAGGAGAGACCAGGACACAAGAATCAGTATCTGCTGTGCCACAAAGCCAGGATTGTTACTGTCAACAGTGAACACATTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTTAGTAAAACCCTAAGCATGTTCGGATTGATAGCGAATTTGTCAGAATTACATTGTGTCGCCGTCATTTTATTAAAAACTACGCTTTTGAGCTTTAAGGGTTATAATTGATCATGAAAAGTTTGGATGTTTGCGAGTAGAATTGCTTTTGTCTTCAAAATGATTCTAATTTGAAGTTAGAATTTAGCGTTTTTTTTTTCCTCTATAATTAATTTTTCGCCAGGAATTTATTACATTCGATTCAATTTTAGTTGGAAACAATTTTCTTGAATCAATTAATTCAAGATCAATTTTTGTGACCGCAGAACCAAAAAAAAGACTATTCGCCTCAATAATTGTTTGCATGGTTAAAATAAAACATGTTCATACTTCTTTTAACATATTATTCCCATGTGTTTAGGTAGATGGTCAGAGAAATTGTATGAACCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGGTGTCTCTAG
Protein sequence

>MS.gene069178.t1

MELSQLGFLEELLVPRKDTWNTLSTGLNELLLPNGWTFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDASSLSYPYLDGFSVPEFDDSAPVLPQQESMEEFGFVGSENKRFQESKISCKVEEQVSETPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEMEEEGTNQINRLEISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVDGQRNCMNPEEIKQSLFRNAGYGGRCL