AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05971

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05971.t1 MTR_8g104380 96.904 969 26 2 1 966 1 968 0.0 1910
MS.gene05971.t1 MTR_5g034780 23.832 428 279 9 18 412 10 423 1.25e-27 120
MS.gene05971.t1 MTR_2g084610 21.805 532 354 16 36 522 29 543 2.26e-20 97.8
MS.gene05971.t1 MTR_8g072250 24.740 384 262 8 20 379 27 407 9.94e-18 89.4
MS.gene05971.t1 MTR_8g063690 30.909 165 111 2 18 180 10 173 1.03e-15 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05971.t1 AT1G48760 71.132 530 153 0 4 533 3 532 0.0 816
MS.gene05971.t1 AT1G48760 34.211 380 169 11 608 966 550 869 9.73e-41 162
MS.gene05971.t1 AT1G48760 71.132 530 153 0 4 533 3 532 0.0 816
MS.gene05971.t1 AT1G48760 34.211 380 169 11 608 966 550 869 9.73e-41 162
MS.gene05971.t1 AT1G48760 71.132 530 153 0 4 533 3 532 0.0 816
MS.gene05971.t1 AT1G48760 34.211 380 169 11 608 966 550 869 9.73e-41 162
MS.gene05971.t1 AT1G60070 23.689 515 329 12 18 493 10 499 3.75e-29 125
MS.gene05971.t1 AT1G60070 23.689 515 329 12 18 493 10 499 3.93e-29 125
MS.gene05971.t1 AT1G23900 22.957 514 332 11 18 492 10 498 2.99e-26 116
MS.gene05971.t1 AT1G23900 22.957 514 332 11 18 492 10 498 2.99e-26 116
MS.gene05971.t1 AT1G23900 22.892 498 322 10 32 492 14 486 1.33e-25 114
MS.gene05971.t1 AT5G22770 24.477 478 300 14 48 484 42 499 3.07e-22 103
MS.gene05971.t1 AT5G22770 24.477 478 300 14 48 484 42 499 3.07e-22 103
MS.gene05971.t1 AT5G22770 24.477 478 300 14 48 484 42 499 3.07e-22 103
MS.gene05971.t1 AT5G22770 24.477 478 300 14 48 484 42 499 3.07e-22 103
MS.gene05971.t1 AT5G22770 24.477 478 300 14 48 484 42 499 3.07e-22 103
MS.gene05971.t1 AT5G22770 24.477 478 300 14 48 484 42 499 3.07e-22 103
MS.gene05971.t1 AT5G22780 24.268 478 301 14 48 484 42 499 6.10e-22 102
MS.gene05971.t1 AT5G22780 24.268 478 301 14 48 484 42 499 6.10e-22 102
MS.gene05971.t1 AT1G31730 23.451 452 302 10 61 481 72 510 1.28e-21 101
MS.gene05971.t1 AT1G23935 27.807 187 115 4 17 201 920 1088 4.06e-11 67.8
MS.gene05971.t1 AT1G23935 27.807 187 115 4 17 201 870 1038 4.38e-11 67.8
MS.gene05971.t1 AT1G23935 27.807 187 115 4 17 201 869 1037 4.41e-11 67.8

Find 192 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTTGGGGTCATTTGC+TGG 0.143883 4.1:-2101901 None:intergenic
CCAAGGGACAATTCTCTTTC+TGG 0.154730 4.1:+2102075 MS.gene05971:CDS
TGATTGGTATGTATCTCTTT+TGG 0.190254 4.1:+2100778 MS.gene05971:CDS
TGGTTGATTCTAAGAATAAT+TGG 0.194260 4.1:+2100243 MS.gene05971:CDS
GAATAATTGGGTTCTTATTA+AGG 0.198854 4.1:+2100256 MS.gene05971:CDS
TCACATGTTGCCACTATTTC+AGG 0.202436 4.1:-2101226 None:intergenic
TGTGCTGCTGCTTGGGTTGC+TGG 0.209383 4.1:+2100968 MS.gene05971:CDS
TCAATTTGTTATCGTCTTCT+AGG 0.213631 4.1:+2100012 MS.gene05971:CDS
AGTTGGCGGTTTCGAAAATT+AGG 0.217232 4.1:+2100441 MS.gene05971:CDS
TGTTTGGGAAACCACGTTTA+AGG 0.219120 4.1:-2102406 None:intergenic
TCTCAATTTCTTCACCCTTT+TGG 0.254793 4.1:-2100826 None:intergenic
TTAATTCAATTCGATTTAAT+AGG 0.284746 4.1:-2101399 None:intergenic
GGATGCTGTGATTAAATCTT+TGG 0.287536 4.1:+2100562 MS.gene05971:CDS
GAGAATCAGCTTATTGATAT+TGG 0.293537 4.1:+2100845 MS.gene05971:CDS
AAAAGAAAGTCTGGAATTAC+TGG 0.294139 4.1:-2102429 None:intergenic
TACACAGGAGGTCCTCAATT+TGG 0.295427 4.1:+2101727 MS.gene05971:CDS
CAGCACCAGGTCCAAATAAA+AGG 0.299618 4.1:+2102046 MS.gene05971:CDS
ATAAGTATCCTGATGCTGTT+AGG 0.308015 4.1:+2100081 MS.gene05971:CDS
GTCTGGAATTACTGGTGTTT+GGG 0.311227 4.1:-2102421 None:intergenic
TGGTTCACTGACAGCAAATC+AGG 0.322287 4.1:+2101426 MS.gene05971:CDS
TTCTTCATCTTCTTCAATCA+TGG 0.323627 4.1:+2099563 MS.gene05971:CDS
AGTCTGGAATTACTGGTGTT+TGG 0.330760 4.1:-2102422 None:intergenic
AAAATCTCATTGCAAAATTC+TGG 0.332711 4.1:-2100701 None:intergenic
TAGGGAGTTGTTGGTTGATC+AGG 0.334558 4.1:+2100460 MS.gene05971:CDS
TTGACTTGGGGTCATTTGCT+GGG 0.337453 4.1:-2101900 None:intergenic
CTCTTCCTTCACAAACGAAT+TGG 0.343097 4.1:+2099816 MS.gene05971:CDS
GATCCTAATCTTAGGTATCT+TGG 0.343147 4.1:+2100482 MS.gene05971:CDS
TTGATCAGGATCCTAATCTT+AGG 0.345048 4.1:+2100474 MS.gene05971:CDS
GTGGGCAGTGCTAGAGAATA+AGG 0.353560 4.1:+2100541 MS.gene05971:CDS
ATGCTAGATTACAGCTTGTT+CGG 0.355040 4.1:+2100882 MS.gene05971:CDS
GCTCCTTTGGAACCTAGGTT+AGG 0.359915 4.1:+2100302 MS.gene05971:CDS
GATAACAAATTGAAGATATC+AGG 0.359983 4.1:-2100002 None:intergenic
TGCTAGATTACAGCTTGTTC+GGG 0.361713 4.1:+2100883 MS.gene05971:CDS
GATTCGGCGGTTGAATTCCT+TGG 0.365674 4.1:-2101283 None:intergenic
GCAATGTGGTGGAGATATCT+AGG 0.366787 4.1:+2100648 MS.gene05971:CDS
GGTGCCATAAAAGATGTTCT+TGG 0.368471 4.1:+2102096 MS.gene05971:CDS
CTTCTAATATGCTCACAAAT+AGG 0.369236 4.1:-2100341 None:intergenic
AAGGTTGTTATTGCTGTCAT+TGG 0.379540 4.1:+2100149 MS.gene05971:CDS
GGATATTGTGTGCTGCTGCT+TGG 0.384334 4.1:+2100960 MS.gene05971:CDS
TGTGAGCATATTAGAAGATC+TGG 0.387990 4.1:+2100347 MS.gene05971:CDS
GATATTGTGTGCTGCTGCTT+GGG 0.392758 4.1:+2100961 MS.gene05971:CDS
TAATGCTACAAAAGAAAGTC+TGG 0.400860 4.1:-2102438 None:intergenic
ATCCTCACGTGGTGGCGAAT+TGG 0.402119 4.1:+2101156 MS.gene05971:CDS
CAATCTCACCACTACAGGTC+TGG 0.403191 4.1:-2102010 None:intergenic
TGATATTGGTATGAGAGTTA+AGG 0.411842 4.1:+2100859 MS.gene05971:CDS
CCCTGTGCACTTATTGAGAC+TGG 0.412013 4.1:-2101607 None:intergenic
ATATTAAAATTGAGTCTTTG+CGG 0.417617 4.1:+2100600 MS.gene05971:CDS
GTTTGGGAAACCACGTTTAA+GGG 0.419015 4.1:-2102405 None:intergenic
TGAGTCTTTGCGGTTGTTGA+TGG 0.420286 4.1:+2100610 MS.gene05971:CDS
GTTGGCGGTTTCGAAAATTA+GGG 0.421475 4.1:+2100442 MS.gene05971:CDS
TTGAAACTCGCTTCAATGGC+GGG 0.422459 4.1:+2099540 None:intergenic
GTTGATTGATCCTGCATTGT+TGG 0.423035 4.1:+2100919 MS.gene05971:CDS
TTCGAAAATTAGGGAGTTGT+TGG 0.424320 4.1:+2100451 MS.gene05971:CDS
AACCACGTTTAAGGGTGAAT+TGG 0.424739 4.1:-2102397 None:intergenic
GGTTGATTCTAAGAATAATT+GGG 0.430366 4.1:+2100244 MS.gene05971:CDS
TTGATTGATCCTGCATTGTT+GGG 0.431387 4.1:+2100920 MS.gene05971:CDS
ATAAAAGATGTTCTTGGAAG+TGG 0.432254 4.1:+2102102 MS.gene05971:CDS
CATATCTTCATCAGAAGATT+CGG 0.435317 4.1:-2101299 None:intergenic
AATATAATCCATGCCGCTTA+CGG 0.440610 4.1:-2101834 None:intergenic
AAGATCTTTACGAAGCTGAT+TGG 0.441592 4.1:-2099895 None:intergenic
AGTGCGGTGGATTTGGTTTG+TGG 0.442074 4.1:-2099708 None:intergenic
CGAGTCTGCTGTTAAGTTGG+CGG 0.442373 4.1:+2100427 MS.gene05971:CDS
ATTCGGCGGTTGAATTCCTT+GGG 0.444031 4.1:-2101282 None:intergenic
GGTAAAGAGAAGATTGTTGA+AGG 0.445625 4.1:+2102303 MS.gene05971:CDS
GGTTGGCTCCTTTGGAACCT+AGG 0.447836 4.1:+2100297 MS.gene05971:CDS
TTGCTACGCCGAAGCATTTG+TGG 0.449028 4.1:+2100522 MS.gene05971:CDS
CTCCTTTGGAACCTAGGTTA+GGG 0.449396 4.1:+2100303 MS.gene05971:CDS
TTTATATTACTGTTTGACTT+GGG 0.449552 4.1:-2101913 None:intergenic
TTTGCGGTTGTTGATGGCTA+TGG 0.455938 4.1:+2100616 MS.gene05971:CDS
CAATTTGTTATCGTCTTCTA+GGG 0.456183 4.1:+2100013 MS.gene05971:CDS
AGAGAATTGTCCCTTGGCTC+TGG 0.457821 4.1:-2102069 None:intergenic
CACTGAAGCTCCTGAAATAG+TGG 0.458120 4.1:+2101216 MS.gene05971:CDS
AAACCAAGATACCTAAGATT+AGG 0.458312 4.1:-2100485 None:intergenic
TCTTTAAGAGCTAATCCATC+TGG 0.460385 4.1:-2101643 None:intergenic
TGAAGGTTCAACTTATGAAC+AGG 0.468220 4.1:+2101246 MS.gene05971:CDS
GGTGGATTTGGTTTGTGGAT+CGG 0.468470 4.1:-2099703 None:intergenic
AAACAAACCCTAACAGCATC+AGG 0.470689 4.1:-2100089 None:intergenic
TCTGAAATGAAAGAAAATCT+TGG 0.471383 4.1:+2102213 MS.gene05971:CDS
ATTTATATTACTGTTTGACT+TGG 0.473047 4.1:-2101914 None:intergenic
AAGATACGATCTCGGATCCT+TGG 0.477342 4.1:-2100192 None:intergenic
ATGTAAACTGCTCTTATTGA+CGG 0.481070 4.1:-2101067 None:intergenic
TGCTACGCCGAAGCATTTGT+GGG 0.481828 4.1:+2100523 MS.gene05971:CDS
AAGTACCTTCATCTTTATCA+AGG 0.484958 4.1:-2101132 None:intergenic
CTATAAAACTCGGGCGCCAA+CGG 0.486255 4.1:-2100215 None:intergenic
CAGACCTGTAGTGGTGAGAT+TGG 0.488736 4.1:+2102011 MS.gene05971:CDS
TCATCCAATCTCACCACTAC+AGG 0.492636 4.1:-2102015 None:intergenic
TAAGTATCCTGATGCTGTTA+GGG 0.494273 4.1:+2100082 MS.gene05971:CDS
TATTGACGGAGGCAAGAGAT+TGG 0.494756 4.1:-2101053 None:intergenic
GTAAAGAGAAGATTGTTGAA+GGG 0.502169 4.1:+2102304 MS.gene05971:CDS
AAGATGATTCTGTGAGAAGT+TGG 0.503536 4.1:-2099635 None:intergenic
TCCAGTCTCAATAAGTGCAC+AGG 0.503955 4.1:+2101606 MS.gene05971:CDS
ACCTACCTCTCCTCCATCCA+TGG 0.506166 4.1:+2099741 MS.gene05971:CDS
GATGATTCCTCATTGCCAAA+AGG 0.507485 4.1:+2100811 MS.gene05971:CDS
AGAGTAGCCACCGTCATGGC+AGG 0.507824 4.1:+2102355 MS.gene05971:CDS
AGTCATCAACTAAGCGGAAA+GGG 0.508007 4.1:+2102163 MS.gene05971:CDS
TAAAGAGAAGATTGTTGAAG+GGG 0.508116 4.1:+2102305 MS.gene05971:CDS
TGGAACCTAGGTTAGGGAAG+AGG 0.509353 4.1:+2100309 MS.gene05971:CDS
TTCAACTTATGAACAGGATG+AGG 0.509479 4.1:+2101252 MS.gene05971:CDS
GACGATTTAAAAGCAATATG+TGG 0.515551 4.1:+2101673 MS.gene05971:CDS
CGGAAAGGGAAGAAGAAACT+AGG 0.518366 4.1:+2102177 MS.gene05971:CDS
ATGACAGCAATAACAACCTT+GGG 0.519815 4.1:-2100146 None:intergenic
TGACATGTCGATTCCATGGA+TGG 0.521451 4.1:-2099754 None:intergenic
TTATATTACTGTTTGACTTG+GGG 0.524276 4.1:-2101912 None:intergenic
AACCGGTGTTGAATCGTTGA+AGG 0.524414 4.1:-2099859 None:intergenic
AAGTGACTGCTCTGTCAACT+TGG 0.527639 4.1:-2101956 None:intergenic
CCCATGACATGTCGATTCCA+TGG 0.528815 4.1:-2099758 None:intergenic
GATGATGGAGATGCAGCACC+AGG 0.530175 4.1:+2102033 MS.gene05971:CDS
TGTGAGAAGTTGGAGTCGCA+TGG 0.531775 4.1:-2099625 None:intergenic
TTAGTTGATGACTTATCAAG+AGG 0.533180 4.1:-2102153 None:intergenic
TCCATGGAATCGACATGTCA+TGG 0.533554 4.1:+2099757 MS.gene05971:CDS
GGATTTGATGAGATCGTCTA+GGG 0.534135 4.1:-2099604 None:intergenic
TGGATTTGATGAGATCGTCT+AGG 0.535735 4.1:-2099605 None:intergenic
TTTAGAAAGTTCTGATCCCA+AGG 0.538404 4.1:+2100130 MS.gene05971:CDS
TTTCTGTGAACTTAGTTCCA+AGG 0.540053 4.1:+2100175 MS.gene05971:CDS
ATGATTCCTCATTGCCAAAA+GGG 0.543104 4.1:+2100812 MS.gene05971:CDS
CAAATAAAAGGCCAGAGCCA+AGG 0.544672 4.1:+2102058 MS.gene05971:CDS
AGCACTGCCCACAAATGCTT+CGG 0.545671 4.1:-2100530 None:intergenic
GGATTTGGTTTGTGGATCGG+TGG 0.546263 4.1:-2099700 None:intergenic
TGACTTGGGGTCATTTGCTG+GGG 0.547581 4.1:-2101899 None:intergenic
CTTGAACACCGTAAGCGGCA+TGG 0.548133 4.1:+2101826 MS.gene05971:CDS
GACTTGGGGTCATTTGCTGG+GGG 0.549296 4.1:-2101898 None:intergenic
AACCAAAATCCTATAAAACT+CGG 0.549778 4.1:-2100225 None:intergenic
GCAGAAATAATTGATAACTC+TGG 0.550847 4.1:+2101505 MS.gene05971:CDS
ACTTTGAGACAAACTCGGGT+TGG 0.551098 4.1:-2102127 None:intergenic
AAATAAAAGGCCAGAGCCAA+GGG 0.552153 4.1:+2102059 MS.gene05971:CDS
ACCAAAATCCTATAAAACTC+GGG 0.557138 4.1:-2100224 None:intergenic
TGAGATCGTCTAGGGTTCGT+TGG 0.558618 4.1:-2099596 None:intergenic
AATGACAGCAATAACAACCT+TGG 0.559382 4.1:-2100147 None:intergenic
TCACGAGTCTGCTGTTAAGT+TGG 0.559885 4.1:+2100424 MS.gene05971:CDS
TGCTTTAATCAACTGTACAA+AGG 0.560968 4.1:-2101485 None:intergenic
AGAGCATCAATGAGTTCAAG+TGG 0.561194 4.1:-2101016 None:intergenic
TTGATGCTCTTGTACAGCCT+CGG 0.564742 4.1:+2101029 MS.gene05971:CDS
AGGGGAAGAATCTGATCAGA+AGG 0.565457 4.1:+2102323 MS.gene05971:CDS
TTCCCTAACCTAGGTTCCAA+AGG 0.565689 4.1:-2100305 None:intergenic
CCATGGAATCGACATGTCAT+GGG 0.569460 4.1:+2099758 MS.gene05971:CDS
AAGTCATCAACTAAGCGGAA+AGG 0.569625 4.1:+2102162 MS.gene05971:CDS
TACACATTACCCAACAATGC+AGG 0.570430 4.1:-2100929 None:intergenic
CCAGAAAGAGAATTGTCCCT+TGG 0.571404 4.1:-2102075 None:intergenic
AATGAAGCCCAGACCTGTAG+TGG 0.574953 4.1:+2102002 MS.gene05971:CDS
CCGCTTACGGTGTTCAAGCA+AGG 0.575163 4.1:-2101821 None:intergenic
GTGTAAAACGAAATTGATGA+AGG 0.576447 4.1:-2101709 None:intergenic
GAAATAGTGGCAACATGTGA+AGG 0.577175 4.1:+2101229 MS.gene05971:CDS
TCTGAAGTAGTGCCAAATTG+AGG 0.577205 4.1:-2101739 None:intergenic
GGTAACCAATTCGTTTGTGA+AGG 0.577896 4.1:-2099821 None:intergenic
GGCTTCCTTCCACGTTGTCG+AGG 0.579884 4.1:+2099779 MS.gene05971:CDS
AATCTCACCACTACAGGTCT+GGG 0.581544 4.1:-2102009 None:intergenic
AAGTGAAGCATGAAAATGAT+TGG 0.581850 4.1:-2099925 None:intergenic
AGCCAATTCGCCACCACGTG+AGG 0.585151 4.1:-2101158 None:intergenic
TGTTACCTTGATAAAGATGA+AGG 0.586027 4.1:+2101127 MS.gene05971:CDS
TCAACTTATGAACAGGATGA+GGG 0.587273 4.1:+2101253 MS.gene05971:CDS
ATCACGCGCGAGGTCGAGAG+TGG 0.587420 4.1:-2099973 None:intergenic
TCCGAGATCGTATCTTCCGT+TGG 0.588364 4.1:+2100199 MS.gene05971:CDS
ACTCTGGTCAGAATGTGGAC+AGG 0.589841 4.1:+2101521 MS.gene05971:CDS
CCTTGCTTGAACACCGTAAG+CGG 0.589937 4.1:+2101821 MS.gene05971:CDS
GGATTACTTTGAGACAAACT+CGG 0.591014 4.1:-2102132 None:intergenic
CAATGTGGTGGAGATATCTA+GGG 0.592630 4.1:+2100649 MS.gene05971:CDS
TGATAACTCTGGTCAGAATG+TGG 0.593750 4.1:+2101516 MS.gene05971:CDS
TTGGTGATGAGAAGAAGAAC+CGG 0.593890 4.1:-2099876 None:intergenic
ATCGTTGAAGGAAATTGAAG+CGG 0.597467 4.1:-2099847 None:intergenic
TGAGACTGGACCAAGTTCCA+CGG 0.597587 4.1:-2101593 None:intergenic
GATTACTTTGAGACAAACTC+GGG 0.600589 4.1:-2102131 None:intergenic
CATTACCTCGACAACGTGGA+AGG 0.601913 4.1:-2099784 None:intergenic
CCAGTCTCAATAAGTGCACA+GGG 0.603918 4.1:+2101607 MS.gene05971:CDS
TCTCAGTCTTATCTGAAGCA+AGG 0.608058 4.1:-2101858 None:intergenic
GATTAAATCTTTGGATGATG+AGG 0.608373 4.1:+2100571 MS.gene05971:CDS
TTCCTTCAACGATTCAACAC+CGG 0.608850 4.1:+2099857 MS.gene05971:CDS
TCCATGGATGGAGGAGAGGT+AGG 0.614609 4.1:-2099742 None:intergenic
TGAAGGAAATTGAAGCGGCA+TGG 0.615422 4.1:-2099842 None:intergenic
GGAAGAGTTACTGTACCAGA+TGG 0.616547 4.1:+2101628 MS.gene05971:CDS
ACAATCCTCTTCCCTAACCT+AGG 0.617516 4.1:-2100314 None:intergenic
CGATTCCATGGATGGAGGAG+AGG 0.617683 4.1:-2099746 None:intergenic
TGGGTAATGTGTACTTGCAT+AGG 0.622080 4.1:+2100939 MS.gene05971:CDS
GCCAACGGAAGATACGATCT+CGG 0.629827 4.1:-2100200 None:intergenic
GGGGAAGAATCTGATCAGAA+GGG 0.631924 4.1:+2102324 MS.gene05971:CDS
AATAAAGAGAGAAGACGGAG+AGG 0.638082 4.1:+2102282 MS.gene05971:CDS
TTGATAAGTCATCAACTAAG+CGG 0.638300 4.1:+2102157 MS.gene05971:CDS
ATCTTCATCAGAAGATTCGG+CGG 0.638703 4.1:-2101296 None:intergenic
AGGATGAGGGCTTTAACCCA+AGG 0.639425 4.1:+2101266 MS.gene05971:CDS
AGCCAATTCACCCTTAAACG+TGG 0.648455 4.1:+2102395 MS.gene05971:CDS
GTAGTGGTGAGATTGGATGA+TGG 0.656383 4.1:+2102018 MS.gene05971:CDS
TTTGTGAAGGAAGAGAGAAG+AGG 0.668379 4.1:-2099808 None:intergenic
GGTCTCTGAGAGCAATGTGG+TGG 0.668445 4.1:+2100637 MS.gene05971:CDS
CATGTCGATTCCATGGATGG+AGG 0.669851 4.1:-2099751 None:intergenic
CGTGGTGGCGAATTGGCTAG+CGG 0.674297 4.1:+2101163 MS.gene05971:CDS
ATAAACATTCCTACCACACG+TGG 0.680451 4.1:-2100738 None:intergenic
TATGGTCTCTGAGAGCAATG+TGG 0.697035 4.1:+2100634 MS.gene05971:CDS
TAAACTGCTCTTATTGACGG+AGG 0.701391 4.1:-2101064 None:intergenic
GGTACTTCATCCTCACGTGG+TGG 0.704717 4.1:+2101148 MS.gene05971:CDS
CAGGAGTGAGATCACGCGCG+AGG 0.711783 4.1:-2099983 None:intergenic
GGAGGCAAGAGATTGGTCCG+AGG 0.728476 4.1:-2101046 None:intergenic
AGGACATTACCTCGACAACG+TGG 0.730671 4.1:-2099788 None:intergenic
GAAGGTACTTCATCCTCACG+TGG 0.730678 4.1:+2101145 MS.gene05971:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTCAATTCGATTTAAT+AGG - chr4.1:2101402-2101421 None:intergenic 15.0%
!!! AATCGAATTGAATTAATTTT+TGG + chr4.1:2101406-2101425 MS.gene05971:CDS 15.0%
!! ATATTAAAATTGAGTCTTTG+CGG + chr4.1:2100600-2100619 MS.gene05971:CDS 20.0%
!! ATTTATATTACTGTTTGACT+TGG - chr4.1:2101917-2101936 None:intergenic 20.0%
!!! TAAAGTTTTAAGTTTTTGTC+TGG + chr4.1:2101102-2101121 MS.gene05971:CDS 20.0%
!!! TTTATATTACTGTTTGACTT+GGG - chr4.1:2101916-2101935 None:intergenic 20.0%
! AAAATCTCATTGCAAAATTC+TGG - chr4.1:2100704-2100723 None:intergenic 25.0%
! AACCAAAATCCTATAAAACT+CGG - chr4.1:2100228-2100247 None:intergenic 25.0%
! GAATAATTGGGTTCTTATTA+AGG + chr4.1:2100256-2100275 MS.gene05971:CDS 25.0%
! GATAACAAATTGAAGATATC+AGG - chr4.1:2100005-2100024 None:intergenic 25.0%
!! AGAATTTTGCAATGAGATTT+TGG + chr4.1:2100703-2100722 MS.gene05971:CDS 25.0%
!! AGATTTTCTTTCATTTCAGA+TGG - chr4.1:2102213-2102232 None:intergenic 25.0%
!! GAATTTTGCAATGAGATTTT+GGG + chr4.1:2100704-2100723 MS.gene05971:CDS 25.0%
!! GGTTGATTCTAAGAATAATT+GGG + chr4.1:2100244-2100263 MS.gene05971:CDS 25.0%
!! TCTGAAATGAAAGAAAATCT+TGG + chr4.1:2102213-2102232 MS.gene05971:CDS 25.0%
!! TGGTTGATTCTAAGAATAAT+TGG + chr4.1:2100243-2100262 MS.gene05971:CDS 25.0%
!!! AGATCATTGTTGATTTTGAT+TGG + chr4.1:2100762-2100781 MS.gene05971:CDS 25.0%
!!! TAGGGTTTGTTTTAAAAGAT+TGG + chr4.1:2100100-2100119 MS.gene05971:CDS 25.0%
!!! TTATATTACTGTTTGACTTG+GGG - chr4.1:2101915-2101934 None:intergenic 25.0%
!!! TTATTTTTGCTACTCGAATT+GGG - chr4.1:2102267-2102286 None:intergenic 25.0%
!!! TTTATTTTTGCTACTCGAAT+TGG - chr4.1:2102268-2102287 None:intergenic 25.0%
AAACCAAGATACCTAAGATT+AGG - chr4.1:2100488-2100507 None:intergenic 30.0%
AAGTACCTTCATCTTTATCA+AGG - chr4.1:2101135-2101154 None:intergenic 30.0%
AAGTGAAGCATGAAAATGAT+TGG - chr4.1:2099928-2099947 None:intergenic 30.0%
ACCAAAATCCTATAAAACTC+GGG - chr4.1:2100227-2100246 None:intergenic 30.0%
ATAAAAGATGTTCTTGGAAG+TGG + chr4.1:2102102-2102121 MS.gene05971:CDS 30.0%
ATGTAAACTGCTCTTATTGA+CGG - chr4.1:2101070-2101089 None:intergenic 30.0%
CATATCTTCATCAGAAGATT+CGG - chr4.1:2101302-2101321 None:intergenic 30.0%
CTTCTAATATGCTCACAAAT+AGG - chr4.1:2100344-2100363 None:intergenic 30.0%
GACGATTTAAAAGCAATATG+TGG + chr4.1:2101673-2101692 MS.gene05971:CDS 30.0%
GAGAATCAGCTTATTGATAT+TGG + chr4.1:2100845-2100864 MS.gene05971:CDS 30.0%
GATTAAATCTTTGGATGATG+AGG + chr4.1:2100571-2100590 MS.gene05971:CDS 30.0%
GCAAAAATAAAGAGAGAAGA+CGG + chr4.1:2102277-2102296 MS.gene05971:CDS 30.0%
GTAAAGAGAAGATTGTTGAA+GGG + chr4.1:2102304-2102323 MS.gene05971:CDS 30.0%
GTGTAAAACGAAATTGATGA+AGG - chr4.1:2101712-2101731 None:intergenic 30.0%
TAAAGAGAAGATTGTTGAAG+GGG + chr4.1:2102305-2102324 MS.gene05971:CDS 30.0%
TGATATTGGTATGAGAGTTA+AGG + chr4.1:2100859-2100878 MS.gene05971:CDS 30.0%
TGCTTTAATCAACTGTACAA+AGG - chr4.1:2101488-2101507 None:intergenic 30.0%
TGTTACCTTGATAAAGATGA+AGG + chr4.1:2101127-2101146 MS.gene05971:CDS 30.0%
TTCTTCATCTTCTTCAATCA+TGG + chr4.1:2099563-2099582 MS.gene05971:CDS 30.0%
TTGATAAGTCATCAACTAAG+CGG + chr4.1:2102157-2102176 MS.gene05971:CDS 30.0%
! AAAAGAAAGTCTGGAATTAC+TGG - chr4.1:2102432-2102451 None:intergenic 30.0%
! ACTTCCAAGAACATCTTTTA+TGG - chr4.1:2102103-2102122 None:intergenic 30.0%
! GATTGGTATGTATCTCTTTT+GGG + chr4.1:2100779-2100798 MS.gene05971:CDS 30.0%
! GCAGAAATAATTGATAACTC+TGG + chr4.1:2101505-2101524 MS.gene05971:CDS 30.0%
! TCATCAATTTCGTTTTACAC+AGG + chr4.1:2101712-2101731 MS.gene05971:CDS 30.0%
! TGATTGGTATGTATCTCTTT+TGG + chr4.1:2100778-2100797 MS.gene05971:CDS 30.0%
! TTCTAAAAAATGACGAGTCA+GGG + chr4.1:2101779-2101798 MS.gene05971:CDS 30.0%
! TTTGAAGATTTTTGCTAGGT+TGG + chr4.1:2100280-2100299 MS.gene05971:CDS 30.0%
!! CAATTTGTTATCGTCTTCTA+GGG + chr4.1:2100013-2100032 MS.gene05971:CDS 30.0%
!! TCAATTTGTTATCGTCTTCT+AGG + chr4.1:2100012-2100031 MS.gene05971:CDS 30.0%
!! TTAGTTGATGACTTATCAAG+AGG - chr4.1:2102156-2102175 None:intergenic 30.0%
!!! AGGTTTTGAAGATTTTTGCT+AGG + chr4.1:2100276-2100295 MS.gene05971:CDS 30.0%
AAGATCTTTACGAAGCTGAT+TGG - chr4.1:2099898-2099917 None:intergenic 35.0%
AAGATGATTCTGTGAGAAGT+TGG - chr4.1:2099638-2099657 None:intergenic 35.0%
AATGACAGCAATAACAACCT+TGG - chr4.1:2100150-2100169 None:intergenic 35.0%
ATAAGTATCCTGATGCTGTT+AGG + chr4.1:2100081-2100100 MS.gene05971:CDS 35.0%
ATCGTTGAAGGAAATTGAAG+CGG - chr4.1:2099850-2099869 None:intergenic 35.0%
ATGACAGCAATAACAACCTT+GGG - chr4.1:2100149-2100168 None:intergenic 35.0%
ATGATTCCTCATTGCCAAAA+GGG + chr4.1:2100812-2100831 MS.gene05971:CDS 35.0%
GATCCTAATCTTAGGTATCT+TGG + chr4.1:2100482-2100501 MS.gene05971:CDS 35.0%
GGATGCTGTGATTAAATCTT+TGG + chr4.1:2100562-2100581 MS.gene05971:CDS 35.0%
GGTAAAGAGAAGATTGTTGA+AGG + chr4.1:2102303-2102322 MS.gene05971:CDS 35.0%
TAAGTATCCTGATGCTGTTA+GGG + chr4.1:2100082-2100101 MS.gene05971:CDS 35.0%
TCAACTTATGAACAGGATGA+GGG + chr4.1:2101253-2101272 MS.gene05971:CDS 35.0%
TGAAGGTTCAACTTATGAAC+AGG + chr4.1:2101246-2101265 MS.gene05971:CDS 35.0%
TGTGAGCATATTAGAAGATC+TGG + chr4.1:2100347-2100366 MS.gene05971:CDS 35.0%
TTCAACTTATGAACAGGATG+AGG + chr4.1:2101252-2101271 MS.gene05971:CDS 35.0%
TTCGAAAATTAGGGAGTTGT+TGG + chr4.1:2100451-2100470 MS.gene05971:CDS 35.0%
TTGATCAGGATCCTAATCTT+AGG + chr4.1:2100474-2100493 MS.gene05971:CDS 35.0%
TTGATTGATCCTGCATTGTT+GGG + chr4.1:2100920-2100939 MS.gene05971:CDS 35.0%
TTTCTGTGAACTTAGTTCCA+AGG + chr4.1:2100175-2100194 MS.gene05971:CDS 35.0%
! AAGGTTGTTATTGCTGTCAT+TGG + chr4.1:2100149-2100168 MS.gene05971:CDS 35.0%
! AATATAATCCATGCCGCTTA+CGG - chr4.1:2101837-2101856 None:intergenic 35.0%
! ATGCTAGATTACAGCTTGTT+CGG + chr4.1:2100882-2100901 MS.gene05971:CDS 35.0%
! CTTCTAAAAAATGACGAGTC+AGG + chr4.1:2101778-2101797 MS.gene05971:CDS 35.0%
! TCAATTTCGTTTTACACAGG+AGG + chr4.1:2101715-2101734 MS.gene05971:CDS 35.0%
! TCTCAATTTCTTCACCCTTT+TGG - chr4.1:2100829-2100848 None:intergenic 35.0%
! TCTTTAAGAGCTAATCCATC+TGG - chr4.1:2101646-2101665 None:intergenic 35.0%
! TTTAGAAAGTTCTGATCCCA+AGG + chr4.1:2100130-2100149 MS.gene05971:CDS 35.0%
!! AGTCACTTCTTTTGAAGAAG+AGG + chr4.1:2101971-2101990 MS.gene05971:CDS 35.0%
!! GATTACTTTGAGACAAACTC+GGG - chr4.1:2102134-2102153 None:intergenic 35.0%
!! GGATTACTTTGAGACAAACT+CGG - chr4.1:2102135-2102154 None:intergenic 35.0%
!!! AAGCTATTGCTGTTGTTTTG+AGG + chr4.1:2100051-2100070 MS.gene05971:CDS 35.0%
!!! AGCTATTGCTGTTGTTTTGA+GGG + chr4.1:2100052-2100071 MS.gene05971:CDS 35.0%
!!! CGTCTTCTAGGGTTTTTATT+AGG + chr4.1:2100024-2100043 MS.gene05971:CDS 35.0%
AAACAAACCCTAACAGCATC+AGG - chr4.1:2100092-2100111 None:intergenic 40.0%
AAATAAAAGGCCAGAGCCAA+GGG + chr4.1:2102059-2102078 MS.gene05971:CDS 40.0%
AACCACGTTTAAGGGTGAAT+TGG - chr4.1:2102400-2102419 None:intergenic 40.0%
AAGTCATCAACTAAGCGGAA+AGG + chr4.1:2102162-2102181 MS.gene05971:CDS 40.0%
AATAAAGAGAGAAGACGGAG+AGG + chr4.1:2102282-2102301 MS.gene05971:CDS 40.0%
AGTCATCAACTAAGCGGAAA+GGG + chr4.1:2102163-2102182 MS.gene05971:CDS 40.0%
AGTTGGCGGTTTCGAAAATT+AGG + chr4.1:2100441-2100460 MS.gene05971:CDS 40.0%
ATAAACATTCCTACCACACG+TGG - chr4.1:2100741-2100760 None:intergenic 40.0%
ATCTTCATCAGAAGATTCGG+CGG - chr4.1:2101299-2101318 None:intergenic 40.0%
CTCTTCCTTCACAAACGAAT+TGG + chr4.1:2099816-2099835 MS.gene05971:CDS 40.0%
GAAATAGTGGCAACATGTGA+AGG + chr4.1:2101229-2101248 MS.gene05971:CDS 40.0%
GATGATTCCTCATTGCCAAA+AGG + chr4.1:2100811-2100830 MS.gene05971:CDS 40.0%
GGATTTGATGAGATCGTCTA+GGG - chr4.1:2099607-2099626 None:intergenic 40.0%
GGTAACCAATTCGTTTGTGA+AGG - chr4.1:2099824-2099843 None:intergenic 40.0%
GTTGATTGATCCTGCATTGT+TGG + chr4.1:2100919-2100938 MS.gene05971:CDS 40.0%
GTTGGCGGTTTCGAAAATTA+GGG + chr4.1:2100442-2100461 MS.gene05971:CDS 40.0%
GTTTGGGAAACCACGTTTAA+GGG - chr4.1:2102408-2102427 None:intergenic 40.0%
TAAACTGCTCTTATTGACGG+AGG - chr4.1:2101067-2101086 None:intergenic 40.0%
TACACATTACCCAACAATGC+AGG - chr4.1:2100932-2100951 None:intergenic 40.0%
TCACATGTTGCCACTATTTC+AGG - chr4.1:2101229-2101248 None:intergenic 40.0%
TGATAACTCTGGTCAGAATG+TGG + chr4.1:2101516-2101535 MS.gene05971:CDS 40.0%
TGGATTTGATGAGATCGTCT+AGG - chr4.1:2099608-2099627 None:intergenic 40.0%
TGGGTAATGTGTACTTGCAT+AGG + chr4.1:2100939-2100958 MS.gene05971:CDS 40.0%
TGTTTGGGAAACCACGTTTA+AGG - chr4.1:2102409-2102428 None:intergenic 40.0%
TTCCTTCAACGATTCAACAC+CGG + chr4.1:2099857-2099876 MS.gene05971:CDS 40.0%
TTTGCTGGGGGATAATCATT+TGG - chr4.1:2101889-2101908 None:intergenic 40.0%
TTTGTGAAGGAAGAGAGAAG+AGG - chr4.1:2099811-2099830 None:intergenic 40.0%
! AGAGCATCAATGAGTTCAAG+TGG - chr4.1:2101019-2101038 None:intergenic 40.0%
! AGTCTGGAATTACTGGTGTT+TGG - chr4.1:2102425-2102444 None:intergenic 40.0%
! CAATGTGGTGGAGATATCTA+GGG + chr4.1:2100649-2100668 MS.gene05971:CDS 40.0%
! CTACTCGAATTGGGATTTTC+AGG - chr4.1:2102258-2102277 None:intergenic 40.0%
! GGTGCCATAAAAGATGTTCT+TGG + chr4.1:2102096-2102115 MS.gene05971:CDS 40.0%
! GTCTGGAATTACTGGTGTTT+GGG - chr4.1:2102424-2102443 None:intergenic 40.0%
! TCTCAGTCTTATCTGAAGCA+AGG - chr4.1:2101861-2101880 None:intergenic 40.0%
! TCTGAAGTAGTGCCAAATTG+AGG - chr4.1:2101742-2101761 None:intergenic 40.0%
! TGCTAGATTACAGCTTGTTC+GGG + chr4.1:2100883-2100902 MS.gene05971:CDS 40.0%
!! CAATTTTAACCACGTGTGGT+AGG + chr4.1:2100729-2100748 MS.gene05971:CDS 40.0%
!! GAATTGGGATTTTCAGGATC+AGG - chr4.1:2102252-2102271 None:intergenic 40.0%
!! GCCCGAGTTTTATAGGATTT+TGG + chr4.1:2100223-2100242 MS.gene05971:CDS 40.0%
!! GGTTCAATTTTAACCACGTG+TGG + chr4.1:2100725-2100744 MS.gene05971:CDS 40.0%
!! TTGGTGATGAGAAGAAGAAC+CGG - chr4.1:2099879-2099898 None:intergenic 40.0%
!!! GTAGGTGAGTTTTTGAAGTG+CGG - chr4.1:2099727-2099746 None:intergenic 40.0%
!!! TTTTTGAAGTGCGGTGGATT+TGG - chr4.1:2099718-2099737 None:intergenic 40.0%
AAAAAGAGTAGCCACCGTCA+TGG + chr4.1:2102351-2102370 MS.gene05971:CDS 45.0%
AAGATACGATCTCGGATCCT+TGG - chr4.1:2100195-2100214 None:intergenic 45.0%
AAGTGACTGCTCTGTCAACT+TGG - chr4.1:2101959-2101978 None:intergenic 45.0%
AATCTCACCACTACAGGTCT+GGG - chr4.1:2102012-2102031 None:intergenic 45.0%
ACAATCCTCTTCCCTAACCT+AGG - chr4.1:2100317-2100336 None:intergenic 45.0%
AGCCAATTCACCCTTAAACG+TGG + chr4.1:2102395-2102414 MS.gene05971:CDS 45.0%
AGGGGAAGAATCTGATCAGA+AGG + chr4.1:2102323-2102342 MS.gene05971:CDS 45.0%
ATTCGGCGGTTGAATTCCTT+GGG - chr4.1:2101285-2101304 None:intergenic 45.0%
CAAATAAAAGGCCAGAGCCA+AGG + chr4.1:2102058-2102077 MS.gene05971:CDS 45.0%
CACTGAAGCTCCTGAAATAG+TGG + chr4.1:2101216-2101235 MS.gene05971:CDS 45.0%
CAGCACCAGGTCCAAATAAA+AGG + chr4.1:2102046-2102065 MS.gene05971:CDS 45.0%
CCAAGGGACAATTCTCTTTC+TGG + chr4.1:2102075-2102094 MS.gene05971:CDS 45.0%
CCAGAAAGAGAATTGTCCCT+TGG - chr4.1:2102078-2102097 None:intergenic 45.0%
CCAGTCTCAATAAGTGCACA+GGG + chr4.1:2101607-2101626 MS.gene05971:CDS 45.0%
CCATGGAATCGACATGTCAT+GGG + chr4.1:2099758-2099777 MS.gene05971:CDS 45.0%
CGGAAAGGGAAGAAGAAACT+AGG + chr4.1:2102177-2102196 MS.gene05971:CDS 45.0%
GGAAGAGTTACTGTACCAGA+TGG + chr4.1:2101628-2101647 MS.gene05971:CDS 45.0%
GGGGAAGAATCTGATCAGAA+GGG + chr4.1:2102324-2102343 MS.gene05971:CDS 45.0%
GTAGTGGTGAGATTGGATGA+TGG + chr4.1:2102018-2102037 MS.gene05971:CDS 45.0%
TACACAGGAGGTCCTCAATT+TGG + chr4.1:2101727-2101746 MS.gene05971:CDS 45.0%
TATTGACGGAGGCAAGAGAT+TGG - chr4.1:2101056-2101075 None:intergenic 45.0%
TCACGAGTCTGCTGTTAAGT+TGG + chr4.1:2100424-2100443 MS.gene05971:CDS 45.0%
TCATCCAATCTCACCACTAC+AGG - chr4.1:2102018-2102037 None:intergenic 45.0%
TCCAGTCTCAATAAGTGCAC+AGG + chr4.1:2101606-2101625 MS.gene05971:CDS 45.0%
TCCATGGAATCGACATGTCA+TGG + chr4.1:2099757-2099776 MS.gene05971:CDS 45.0%
TGAAGGAAATTGAAGCGGCA+TGG - chr4.1:2099845-2099864 None:intergenic 45.0%
TGAGTCTTTGCGGTTGTTGA+TGG + chr4.1:2100610-2100629 MS.gene05971:CDS 45.0%
TGGTTCACTGACAGCAAATC+AGG + chr4.1:2101426-2101445 MS.gene05971:CDS 45.0%
TTCCCTAACCTAGGTTCCAA+AGG - chr4.1:2100308-2100327 None:intergenic 45.0%
TTGATGCTCTTGTACAGCCT+CGG + chr4.1:2101029-2101048 MS.gene05971:CDS 45.0%
! AACCGGTGTTGAATCGTTGA+AGG - chr4.1:2099862-2099881 None:intergenic 45.0%
! GATATTGTGTGCTGCTGCTT+GGG + chr4.1:2100961-2100980 MS.gene05971:CDS 45.0%
! GCAATGTGGTGGAGATATCT+AGG + chr4.1:2100648-2100667 MS.gene05971:CDS 45.0%
! TAGGGAGTTGTTGGTTGATC+AGG + chr4.1:2100460-2100479 MS.gene05971:CDS 45.0%
! TATGGTCTCTGAGAGCAATG+TGG + chr4.1:2100634-2100653 MS.gene05971:CDS 45.0%
! TCTTCACCCTTTTGGCAATG+AGG - chr4.1:2100821-2100840 None:intergenic 45.0%
!! ACTTTGAGACAAACTCGGGT+TGG - chr4.1:2102130-2102149 None:intergenic 45.0%
!! CTCCTTTGGAACCTAGGTTA+GGG + chr4.1:2100303-2100322 MS.gene05971:CDS 45.0%
!! GGTGGATTTGGTTTGTGGAT+CGG - chr4.1:2099706-2099725 None:intergenic 45.0%
!! TCTGGCCTTTTATTTGGACC+TGG - chr4.1:2102054-2102073 None:intergenic 45.0%
!! TGACATGTCGATTCCATGGA+TGG - chr4.1:2099757-2099776 None:intergenic 45.0%
!! TTGACTTGGGGTCATTTGCT+GGG - chr4.1:2101903-2101922 None:intergenic 45.0%
!! TTTGACTTGGGGTCATTTGC+TGG - chr4.1:2101904-2101923 None:intergenic 45.0%
!! TTTGCGGTTGTTGATGGCTA+TGG + chr4.1:2100616-2100635 MS.gene05971:CDS 45.0%
!! TTTTGCTAGGTTGGCTCCTT+TGG + chr4.1:2100289-2100308 MS.gene05971:CDS 45.0%
!!! CGCTTGTTTTTGAGTGTGTG+AGG + chr4.1:2100378-2100397 MS.gene05971:CDS 45.0%
!!! CTTGGCTCTGGCCTTTTATT+TGG - chr4.1:2102060-2102079 None:intergenic 45.0%
!!! GATGCTTTTTCCGTGGAACT+TGG + chr4.1:2101583-2101602 MS.gene05971:CDS 45.0%
AATGAAGCCCAGACCTGTAG+TGG + chr4.1:2102002-2102021 MS.gene05971:CDS 50.0%
ACTCTGGTCAGAATGTGGAC+AGG + chr4.1:2101521-2101540 MS.gene05971:CDS 50.0%
AGAGAATTGTCCCTTGGCTC+TGG - chr4.1:2102072-2102091 None:intergenic 50.0%
AGCACTGCCCACAAATGCTT+CGG - chr4.1:2100533-2100552 None:intergenic 50.0%
AGGACATTACCTCGACAACG+TGG - chr4.1:2099791-2099810 None:intergenic 50.0%
CAATCTCACCACTACAGGTC+TGG - chr4.1:2102013-2102032 None:intergenic 50.0%
CAGACCTGTAGTGGTGAGAT+TGG + chr4.1:2102011-2102030 MS.gene05971:CDS 50.0%
CATTACCTCGACAACGTGGA+AGG - chr4.1:2099787-2099806 None:intergenic 50.0%
CCCTGTGCACTTATTGAGAC+TGG - chr4.1:2101610-2101629 None:intergenic 50.0%
CCTTGCTTGAACACCGTAAG+CGG + chr4.1:2101821-2101840 MS.gene05971:CDS 50.0%
CTATAAAACTCGGGCGCCAA+CGG - chr4.1:2100218-2100237 None:intergenic 50.0%
GATTCGGCGGTTGAATTCCT+TGG - chr4.1:2101286-2101305 None:intergenic 50.0%
GCCAACGGAAGATACGATCT+CGG - chr4.1:2100203-2100222 None:intergenic 50.0%
GTGGGCAGTGCTAGAGAATA+AGG + chr4.1:2100541-2100560 MS.gene05971:CDS 50.0%
TCCGAGATCGTATCTTCCGT+TGG + chr4.1:2100199-2100218 MS.gene05971:CDS 50.0%
TGAGACTGGACCAAGTTCCA+CGG - chr4.1:2101596-2101615 None:intergenic 50.0%
TGGAACCTAGGTTAGGGAAG+AGG + chr4.1:2100309-2100328 MS.gene05971:CDS 50.0%
TGTGAGAAGTTGGAGTCGCA+TGG - chr4.1:2099628-2099647 None:intergenic 50.0%
! AGGATGAGGGCTTTAACCCA+AGG + chr4.1:2101266-2101285 MS.gene05971:CDS 50.0%
! GAGTTTTACGCCTGCCATGA+CGG - chr4.1:2102368-2102387 None:intergenic 50.0%
! GGATATTGTGTGCTGCTGCT+TGG + chr4.1:2100960-2100979 MS.gene05971:CDS 50.0%
! TGACTTGGGGTCATTTGCTG+GGG - chr4.1:2101902-2101921 None:intergenic 50.0%
! TGAGATCGTCTAGGGTTCGT+TGG - chr4.1:2099599-2099618 None:intergenic 50.0%
! TGCTACGCCGAAGCATTTGT+GGG + chr4.1:2100523-2100542 MS.gene05971:CDS 50.0%
! TTGCTACGCCGAAGCATTTG+TGG + chr4.1:2100522-2100541 MS.gene05971:CDS 50.0%
!! AGTGCGGTGGATTTGGTTTG+TGG - chr4.1:2099711-2099730 None:intergenic 50.0%
!! CATGTCGATTCCATGGATGG+AGG - chr4.1:2099754-2099773 None:intergenic 50.0%
!! CCCATGACATGTCGATTCCA+TGG - chr4.1:2099761-2099780 None:intergenic 50.0%
!! CGAGTCTGCTGTTAAGTTGG+CGG + chr4.1:2100427-2100446 MS.gene05971:CDS 50.0%
!! GAAGGTACTTCATCCTCACG+TGG + chr4.1:2101145-2101164 MS.gene05971:CDS 50.0%
!! GCTCCTTTGGAACCTAGGTT+AGG + chr4.1:2100302-2100321 MS.gene05971:CDS 50.0%
!! GGATTTGGTTTGTGGATCGG+TGG - chr4.1:2099703-2099722 None:intergenic 50.0%
!! GTTCCACGGAAAAAGCATCG+CGG - chr4.1:2101582-2101601 None:intergenic 50.0%
!!! GGTGAGTTTTTGAAGTGCGG+TGG - chr4.1:2099724-2099743 None:intergenic 50.0%
ACCTACCTCTCCTCCATCCA+TGG + chr4.1:2099741-2099760 MS.gene05971:CDS 55.0%
CCGCTTACGGTGTTCAAGCA+AGG - chr4.1:2101824-2101843 None:intergenic 55.0%
CGATTCCATGGATGGAGGAG+AGG - chr4.1:2099749-2099768 None:intergenic 55.0%
CTTGAACACCGTAAGCGGCA+TGG + chr4.1:2101826-2101845 MS.gene05971:CDS 55.0%
GGTACTTCATCCTCACGTGG+TGG + chr4.1:2101148-2101167 MS.gene05971:CDS 55.0%
TCCATGGATGGAGGAGAGGT+AGG - chr4.1:2099745-2099764 None:intergenic 55.0%
! ATCCTCACGTGGTGGCGAAT+TGG + chr4.1:2101156-2101175 MS.gene05971:CDS 55.0%
! GACTTGGGGTCATTTGCTGG+GGG - chr4.1:2101901-2101920 None:intergenic 55.0%
! GGTCTCTGAGAGCAATGTGG+TGG + chr4.1:2100637-2100656 MS.gene05971:CDS 55.0%
! TTTTACGCCTGCCATGACGG+TGG - chr4.1:2102365-2102384 None:intergenic 55.0%
!! CACGGAAAAAGCATCGCGGA+TGG - chr4.1:2101578-2101597 None:intergenic 55.0%
!! CGTTGGCGCCCGAGTTTTAT+AGG + chr4.1:2100216-2100235 MS.gene05971:CDS 55.0%
!! GATGATGGAGATGCAGCACC+AGG + chr4.1:2102033-2102052 MS.gene05971:CDS 55.0%
!! GGTTGGCTCCTTTGGAACCT+AGG + chr4.1:2100297-2100316 MS.gene05971:CDS 55.0%
!!! CATCCGCGATGCTTTTTCCG+TGG + chr4.1:2101576-2101595 MS.gene05971:CDS 55.0%
AGAGTAGCCACCGTCATGGC+AGG + chr4.1:2102355-2102374 MS.gene05971:CDS 60.0%
AGCCAATTCGCCACCACGTG+AGG - chr4.1:2101161-2101180 None:intergenic 60.0%
GGCTTCCTTCCACGTTGTCG+AGG + chr4.1:2099779-2099798 MS.gene05971:CDS 60.0%
! CGTGGTGGCGAATTGGCTAG+CGG + chr4.1:2101163-2101182 MS.gene05971:CDS 60.0%
! GGAGGCAAGAGATTGGTCCG+AGG - chr4.1:2101049-2101068 None:intergenic 60.0%
! TGTGCTGCTGCTTGGGTTGC+TGG + chr4.1:2100968-2100987 MS.gene05971:CDS 60.0%
ATCACGCGCGAGGTCGAGAG+TGG - chr4.1:2099976-2099995 None:intergenic 65.0%
CAGGAGTGAGATCACGCGCG+AGG - chr4.1:2099986-2100005 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 2099555 2102455 2099555 ID=MS.gene05971
chr4.1 mRNA 2099555 2102455 2099555 ID=MS.gene05971.t1;Parent=MS.gene05971
chr4.1 exon 2099555 2102455 2099555 ID=MS.gene05971.t1.exon1;Parent=MS.gene05971.t1
chr4.1 CDS 2099555 2102455 2099555 ID=cds.MS.gene05971.t1;Parent=MS.gene05971.t1
Gene Sequence

>MS.gene05971

ATGGCGGGTTCTTCATCTTCTTCAATCATGGACAATCTCTTCCAACGAACCCTAGACGATCTCATCAAATCCATGCGACTCCAACTTCTCACAGAATCATCTTTCATCTCTAAATCAATCGAAGAAATTCGTCGCGAAATCAAATCCACCGATCCACAAACCAAATCCACCGCACTTCAAAAACTCACCTACCTCTCCTCCATCCATGGAATCGACATGTCATGGGCTTCCTTCCACGTTGTCGAGGTAATGTCCTCTTCTCTCTTCCTTCACAAACGAATTGGTTACCATGCCGCTTCAATTTCCTTCAACGATTCAACACCGGTTCTTCTTCTCATCACCAATCAGCTTCGTAAAGATCTTTCTTCAACCAATCATTTTCATGCTTCACTTGCGCTTCATTGTTTATCAACAATCGCCACTCTCGACCTCGCGCGTGATCTCACTCCTGATATCTTCAATTTGTTATCGTCTTCTAGGGTTTTTATTAGGAATAAAGCTATTGCTGTTGTTTTGAGGGTTTTTGATAAGTATCCTGATGCTGTTAGGGTTTGTTTTAAAAGATTGGTTGAGAATTTAGAAAGTTCTGATCCCAAGGTTGTTATTGCTGTCATTGGTGTTTTCTGTGAACTTAGTTCCAAGGATCCGAGATCGTATCTTCCGTTGGCGCCCGAGTTTTATAGGATTTTGGTTGATTCTAAGAATAATTGGGTTCTTATTAAGGTTTTGAAGATTTTTGCTAGGTTGGCTCCTTTGGAACCTAGGTTAGGGAAGAGGATTGTTGAACCTATTTGTGAGCATATTAGAAGATCTGGAGCAAAATCGCTTGTTTTTGAGTGTGTGAGGACTGTGATTACTAGTTTAAGTGATCACGAGTCTGCTGTTAAGTTGGCGGTTTCGAAAATTAGGGAGTTGTTGGTTGATCAGGATCCTAATCTTAGGTATCTTGGTTTGCATGCGCTTTCAGTTGCTACGCCGAAGCATTTGTGGGCAGTGCTAGAGAATAAGGATGCTGTGATTAAATCTTTGGATGATGAGGATTCAAATATTAAAATTGAGTCTTTGCGGTTGTTGATGGCTATGGTCTCTGAGAGCAATGTGGTGGAGATATCTAGGGTGTTGCTTAATTATGCATTGAAGTCTGATCCAGAATTTTGCAATGAGATTTTGGGTTCAATTTTAACCACGTGTGGTAGGAATGTTTATGAGATCATTGTTGATTTTGATTGGTATGTATCTCTTTTGGGAGAAATGACGATGATTCCTCATTGCCAAAAGGGTGAAGAAATTGAGAATCAGCTTATTGATATTGGTATGAGAGTTAAGGATGCTAGATTACAGCTTGTTCGGGTTGCTCGCGATCTGTTGATTGATCCTGCATTGTTGGGTAATGTGTACTTGCATAGGATATTGTGTGCTGCTGCTTGGGTTGCTGGAGAGTATGTACAGCTTGCGAGCAATCCACTTGAACTCATTGATGCTCTTGTACAGCCTCGGACCAATCTCTTGCCTCCGTCAATAAGAGCAGTTTACATCAATTCTGTTCTTAAAGTTTTAAGTTTTTGTCTGGAGTGTTACCTTGATAAAGATGAAGGTACTTCATCCTCACGTGGTGGCGAATTGGCTAGCGGACAGTCAGAAATGTTTGTTGTAAAAAATGACACTGAAGCTCCTGAAATAGTGGCAACATGTGAAGGTTCAACTTATGAACAGGATGAGGGCTTTAACCCAAGGAATTCAACCGCCGAATCTTCTGATGAAGATATGTATGTTGAAAACGACACAGATAGAGTTGTCACTCTTTCGTCAAAAAAGAAAAATTTCACACATGAATCTGTTGTAAACCTATTAAATCGAATTGAATTAATTTTTGGTTCACTGACAGCAAATCAGGATGTTGAAGTACTAGAGAGAGCGCGAAACATATTTGCCTTTGTACAGTTGATTAAAGCAGAAATAATTGATAACTCTGGTCAGAATGTGGACAGGAAATATTCTCAAGTTTCAACTGTTATCAAATCCATCCGCGATGCTTTTTCCGTGGAACTTGGTCCAGTCTCAATAAGTGCACAGGGAAGAGTTACTGTACCAGATGGATTAGCTCTTAAAGAGAATCTTGACGATTTAAAAGCAATATGTGGTGATATCGAGCTACCTTCATCAATTTCGTTTTACACAGGAGGTCCTCAATTTGGCACTACTTCAGATGCTTCTTCGTCTAATCTTCTAAAAAATGACGAGTCAGGGCAATCAAATGAATCTACATCCTTGCTTGAACACCGTAAGCGGCATGGATTATATTACCTTGCTTCAGATAAGACTGAGATTGTTCCAAATGATTATCCCCCAGCAAATGACCCCAAGTCAAACAGTAATATAAATGATGAAGCTGATGAGCTAACCAAGTTGACAGAGCAGTCACTTCTTTTGAAGAAGAGGACAAATCAAATGAAGCCCAGACCTGTAGTGGTGAGATTGGATGATGGAGATGCAGCACCAGGTCCAAATAAAAGGCCAGAGCCAAGGGACAATTCTCTTTCTGGTGCCATAAAAGATGTTCTTGGAAGTGGAACCAACCCGAGTTTGTCTCAAAGTAATCCTCTTGATAAGTCATCAACTAAGCGGAAAGGGAAGAAGAAACTAGGCACAGATCTTCCATCTGAAATGAAAGAAAATCTTGGTGATGCAGAAAAGCCTGATCCTGAAAATCCCAATTCGAGTAGCAAAAATAAAGAGAGAAGACGGAGAGGTAAAGAGAAGATTGTTGAAGGGGAAGAATCTGATCAGAAGGGAAAGAAAAAGAGTAGCCACCGTCATGGCAGGCGTAAAACTCATCAAAGAGCCAATTCACCCTTAAACGTGGTTTCCCAAACACCAGTAATTCCAGACTTTCTTTTGTAG
Protein sequence

>MS.gene05971.t1

MAGSSSSSIMDNLFQRTLDDLIKSMRLQLLTESSFISKSIEEIRREIKSTDPQTKSTALQKLTYLSSIHGIDMSWASFHVVEVMSSSLFLHKRIGYHAASISFNDSTPVLLLITNQLRKDLSSTNHFHASLALHCLSTIATLDLARDLTPDIFNLLSSSRVFIRNKAIAVVLRVFDKYPDAVRVCFKRLVENLESSDPKVVIAVIGVFCELSSKDPRSYLPLAPEFYRILVDSKNNWVLIKVLKIFARLAPLEPRLGKRIVEPICEHIRRSGAKSLVFECVRTVITSLSDHESAVKLAVSKIRELLVDQDPNLRYLGLHALSVATPKHLWAVLENKDAVIKSLDDEDSNIKIESLRLLMAMVSESNVVEISRVLLNYALKSDPEFCNEILGSILTTCGRNVYEIIVDFDWYVSLLGEMTMIPHCQKGEEIENQLIDIGMRVKDARLQLVRVARDLLIDPALLGNVYLHRILCAAAWVAGEYVQLASNPLELIDALVQPRTNLLPPSIRAVYINSVLKVLSFCLECYLDKDEGTSSSRGGELASGQSEMFVVKNDTEAPEIVATCEGSTYEQDEGFNPRNSTAESSDEDMYVENDTDRVVTLSSKKKNFTHESVVNLLNRIELIFGSLTANQDVEVLERARNIFAFVQLIKAEIIDNSGQNVDRKYSQVSTVIKSIRDAFSVELGPVSISAQGRVTVPDGLALKENLDDLKAICGDIELPSSISFYTGGPQFGTTSDASSSNLLKNDESGQSNESTSLLEHRKRHGLYYLASDKTEIVPNDYPPANDPKSNSNINDEADELTKLTEQSLLLKKRTNQMKPRPVVVRLDDGDAAPGPNKRPEPRDNSLSGAIKDVLGSGTNPSLSQSNPLDKSSTKRKGKKKLGTDLPSEMKENLGDAEKPDPENPNSSSKNKERRRRGKEKIVEGEESDQKGKKKSSHRHGRRKTHQRANSPLNVVSQTPVIPDFLL