AlfalfaGEDB | MS.gene069381

M. sativa cultivar XinJiangDaYe / MS.gene069381

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069381.t1	QDC33485.1	92.8	359	25	1	1	358	1	359	5.00E-192	680.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069381.t1	A0A3Q7HH64	57.8	372	123	9	1	356	1	354	5.0e-108	392.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069381.t1	A0A4Y5ULP1	92.8	359	25	1	1	358	1	359	3.6e-192	680.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene069381.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059867	MS.gene069381	0.852821	3.59E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069381.t1	MTR_2g079990	93.296	358	18	2	1	358	3	354	0.0	682
MS.gene069381.t1	MTR_2g079990	86.528	386	18	3	1	358	3	382	0.0	666
MS.gene069381.t1	MTR_8g059170	65.330	349	96	8	1	347	1	326	6.19e-150	426
MS.gene069381.t1	MTR_3g088110	66.279	172	54	2	10	178	3	173	4.00e-78	241
MS.gene069381.t1	MTR_2g080010	64.162	173	49	2	11	170	12	184	2.33e-76	239
MS.gene069381.t1	MTR_8g094580	67.702	161	47	2	12	168	5	164	2.14e-75	234
MS.gene069381.t1	MTR_4g089135	63.388	183	42	3	14	171	15	197	1.22e-74	234
MS.gene069381.t1	MTR_2157s0010	50.584	257	105	7	10	254	4	250	1.92e-74	231
MS.gene069381.t1	MTR_3g096920	66.049	162	51	2	10	168	3	163	1.14e-73	230
MS.gene069381.t1	MTR_7g085220	63.314	169	49	3	11	166	5	173	4.81e-73	230

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069381.t1	AT4G27410	78.636	220	46	1	1	220	1	219	7.82e-124	358
MS.gene069381.t1	AT1G52890	57.349	347	115	9	1	345	1	316	5.95e-122	354
MS.gene069381.t1	AT4G27410	72.996	237	46	2	1	220	1	236	2.29e-119	348
MS.gene069381.t1	AT3G15500	68.924	251	71	4	1	247	1	248	9.99e-118	343
MS.gene069381.t1	AT3G04070	62.694	193	57	5	6	185	4	194	1.26e-76	239
MS.gene069381.t1	AT1G01720	65.341	176	55	3	12	182	5	179	3.18e-76	237
MS.gene069381.t1	AT5G63790	59.162	191	69	3	10	195	46	232	2.47e-74	233
MS.gene069381.t1	AT5G63790	59.162	191	69	3	10	195	56	242	2.90e-74	233
MS.gene069381.t1	AT5G08790	64.072	167	54	2	10	171	3	168	4.49e-74	231
MS.gene069381.t1	AT1G61110	66.477	176	43	4	14	175	16	189	3.69e-73	230

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Find 83 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAAGCTCTTCATCAG+TGG	0.495470	2.3:+17848599	None:intergenic
AACCAAGTTGAGAATTCGTC+TGG	0.381998	2.3:-17847021	MS.gene069381:CDS
AACTCACTTGGAAGAACCCA+TGG	0.541829	2.3:+17848498	None:intergenic
AAGCAATGGTCGTCAATTTG+TGG	0.495194	2.3:+17847354	None:intergenic
ACAAATGAAGGTAGAAAAGT+TGG	0.415542	2.3:-17848201	MS.gene069381:CDS
ACAAGAAGCTCTTCATCAGT+GGG	0.569952	2.3:+17848600	None:intergenic
ACAGTAACAGGGTTTCAAGA+CGG	0.683973	2.3:-17847201	MS.gene069381:CDS
ACCAAGTTGAGAATTCGTCT+GGG	0.609603	2.3:-17847020	MS.gene069381:CDS
ACCCAGACGAATTCTCAACT+TGG	0.539808	2.3:+17847019	None:intergenic
ACCCGTGCATCCGACTGAAG+AGG	0.627654	2.3:-17847067	MS.gene069381:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATGAAGGTAGAAAAGT+TGG	-	chr2.3:17847368-17847387	MS.gene069381:CDS	30.0%
ATAAACGTGTACGAAATAGT+TGG	+	chr2.3:17847104-17847123	None:intergenic	30.0%
ATTTCTTTAGTCCAAGAGAT+AGG	-	chr2.3:17847267-17847286	MS.gene069381:CDS	30.0%
GAATACACTCAATATAGCAA+CGG	-	chr2.3:17848143-17848162	MS.gene069381:CDS	30.0%
TAGGCTGATGATTTGAAAAT+GGG	-	chr2.3:17847644-17847663	MS.gene069381:intron	30.0%
TGCTGCAAATAACAATTTCA+TGG	-	chr2.3:17848316-17848335	MS.gene069381:CDS	30.0%
TGTTATAATCTTGTCTGTTC+CGG	+	chr2.3:17847351-17847370	None:intergenic	30.0%
AGAGTCCAATTGACATAATG+TGG	+	chr2.3:17848453-17848472	None:intergenic	35.0%
AGTCCAATTGACATAATGTG+GGG	+	chr2.3:17848451-17848470	None:intergenic	35.0%
CAGTAAAAGGTCAAAAACAG+AGG	+	chr2.3:17847962-17847981	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	17846906	17848685	17846906	ID=MS.gene069381
chr2.3	mRNA	17846906	17848685	17846906	ID=MS.gene069381.t1;Parent=MS.gene069381
chr2.3	exon	17848505	17848685	17848505	ID=MS.gene069381.t1.exon1;Parent=MS.gene069381.t1
chr2.3	CDS	17848505	17848685	17848505	ID=cds.MS.gene069381.t1;Parent=MS.gene069381.t1
chr2.3	exon	17848086	17848354	17848086	ID=MS.gene069381.t1.exon2;Parent=MS.gene069381.t1
chr2.3	CDS	17848086	17848354	17848086	ID=cds.MS.gene069381.t1;Parent=MS.gene069381.t1
chr2.3	exon	17846906	17847532	17846906	ID=MS.gene069381.t1.exon3;Parent=MS.gene069381.t1
chr2.3	CDS	17846906	17847532	17846906	ID=cds.MS.gene069381.t1;Parent=MS.gene069381.t1

Gene Sequence

>MS.gene069381

ATGGGAATTCAAGACAAAGATCCTCTTGCACAATTGAGTTTACCTCCTGGTTTTAGATTTTACCCCACTGATGAAGAGCTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTCGACCCATGGGTTCTTCCAAGTGAGTTAACTTCACCAACTATTTCGTACACGTTTATGTTTGATATCACAACGAATTTGTTTTTGTTAGAATCACGGTGAATCATCGTGATTTAAATAATTGTACCTATGGTTTATTTATATTAAAGTTGTGTGTGATTAATTTGTGTAGGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTCTTTAGTCCAAGAGATAGGAAGTATCCAAATGGGACTAGGCCAAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACCGGAACAGACAAGATTATAACAAATGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTTTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGACTACTTGACTCTTCACGAAACAACGGTGGCACCAAGGTATTATATGACATTCATTTTTTTTGTTACTATTTAACTATTTCAAATGTCTAAATTTAGCATTACTAATTTTTACTTAGTATATACACAAATAATTTTAAATTGATCACAATTCTCAATATTACAAAGAATTTTATCTAGGCTGATGATTTGAAAATGGGCAATCAAATATTGAGAATCACAACAAATTTTTTAAAAAAATTGGGTGATACATGGTTTAAATGAATTGCACTCATACATACACGTCAATATTTGATATTTCAAAGGATTAATATTAAATTTTTTTCTCCTTCTTAAAAAAATAATAAATATTTTTTTAATAATTCCTAATCATGATCACAAATTTTATTTTTTGAAACCCTTTGCCAATTATCAAACTCTTTTTTAAACCTTGTCACCACATTATTTATTTCACAATTCACTTCCTTTTGTTCCATTTTAAAATATTCACTTCCTCTGTTTTTGACCTTTTACTGTTTTACCAAATTGTTTTATGGGATTATTATTATTATTACAACGTTAATTTGTTGAAATTTTTGTTCTTGAATTGCAGCTAGATGATTGGGTTCTATGTCGTATCTACAAGAAAAATTCAAGTGCACAAAAACCTATTCCAAATGGCGTCGTTTCAAGTAGAGAATACACTCAATATAGCAACGGTTCATCGTCTTCTTCATCATCCCACCTCGACGACGTTCTAGAATCACTTCCACAAATTGACGACCATTGCTTCAAGCTGCCACGTGTCAACTCGCTAAGAACGGCGCAACATCACCAACAAGAAGAGAAGATGAATCTTCAAAATTTAAATGCTGCAAATAACAATTTCATGGATTGGTCTAATTCATCATCGATTTTGAACACAGTAACAGGGTTTCAAGACGGTCAAACTCAAGGAATGATGAATTTTAGTGGTTGCAATGACCTTTATGTCCCTTCTGTCCCCACATTATGTCAATTGGACTCTTCCGTTATCACGGAGAAAACTAGCAAGATACCCGTGCATCCGACTGAAGAGGAGGTTCAAAGTGGGGCGAGAGCAAACCAAGTTGAGAATTCGTCTGGGTTTTTTCAACGCGGTTCAAATGATTTTACTCAAGGAATGGGATACACTAATCCGGTTGACCCGTTTGGGTTTAGGTACCCGGTTCAACTAGTTGGATTTGGATTCCAACAATGA

Protein sequence

>MS.gene069381.t1

MGIQDKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKPIPNGVVSSREYTQYSNGSSSSSSSHLDDVLESLPQIDDHCFKLPRVNSLRTAQHHQQEEKMNLQNLNAANNNFMDWSNSSSILNTVTGFQDGQTQGMMNFSGCNDLYVPSVPTLCQLDSSVITEKTSKIPVHPTEEEVQSGARANQVENSSGFFQRGSNDFTQGMGYTNPVDPFGFRYPVQLVGFGFQQ