AlfalfaGEDB | MS.gene059867

M. sativa cultivar XinJiangDaYe / MS.gene059867

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059867.t1	QDC33485.1	95.8	359	14	1	1	358	1	359	6.60E-192	679.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059867.t1	A0A3Q7HH64	57.5	358	118	9	1	342	1	340	4.1e-102	372.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059867.t1	A0A4Y5ULP1	95.8	359	14	1	1	358	1	359	4.7e-192	679.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene059867.t1	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059867	MS.gene065170	0.80032	1.52E-48	-1.69E-46
MS.gene059867	MS.gene067308	0.810227	1.28E-50	-1.69E-46
MS.gene059867	MS.gene069381	0.852821	3.59E-61	-1.69E-46
MS.gene059867	MS.gene32575	0.850632	1.50E-60	-1.69E-46
MS.gene059867	MS.gene32576	0.841731	3.98E-58	-1.69E-46
MS.gene059867	MS.gene34196	0.857617	1.45E-62	-1.69E-46
MS.gene059867	MS.gene36079	0.844395	7.77E-59	-1.69E-46
MS.gene059867	MS.gene41702	0.809719	1.65E-50	-1.69E-46
MS.gene059867	MS.gene51895	0.816217	6.20E-52	-1.69E-46
MS.gene059867	MS.gene94266	0.803923	2.77E-49	-1.69E-46

Showing 1 to 10 of 10 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059867.t1	MTR_2g079990	93.575	358	17	2	1	358	3	354	0.0	685
MS.gene059867.t1	MTR_2g079990	86.788	386	17	3	1	358	3	382	0.0	670
MS.gene059867.t1	MTR_8g059170	65.043	349	97	8	1	347	1	326	2.08e-149	424
MS.gene059867.t1	MTR_3g088110	66.279	172	54	2	10	178	3	173	5.48e-78	241
MS.gene059867.t1	MTR_2g080010	64.162	173	49	2	11	170	12	184	2.54e-76	239
MS.gene059867.t1	MTR_8g094580	67.702	161	47	2	12	168	5	164	2.36e-75	234
MS.gene059867.t1	MTR_4g089135	63.388	183	42	3	14	171	15	197	1.27e-74	234
MS.gene059867.t1	MTR_2157s0010	50.584	257	105	7	10	254	4	250	2.07e-74	231
MS.gene059867.t1	MTR_3g096920	66.049	162	51	2	10	168	3	163	1.45e-73	230
MS.gene059867.t1	MTR_7g085220	63.314	169	49	3	11	166	5	173	6.43e-73	230

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059867.t1	AT4G27410	78.636	220	46	1	1	220	1	219	8.72e-124	358
MS.gene059867.t1	AT1G52890	57.061	347	116	9	1	345	1	316	7.48e-122	354
MS.gene059867.t1	AT4G27410	72.996	237	46	2	1	220	1	236	2.49e-119	347
MS.gene059867.t1	AT3G15500	68.924	251	71	4	1	247	1	248	8.57e-118	344
MS.gene059867.t1	AT3G04070	62.694	193	57	5	6	185	4	194	2.31e-76	239
MS.gene059867.t1	AT1G01720	65.341	176	55	3	12	182	5	179	4.69e-76	236
MS.gene059867.t1	AT5G63790	59.162	191	69	3	10	195	46	232	2.34e-74	233
MS.gene059867.t1	AT5G63790	59.162	191	69	3	10	195	56	242	4.47e-74	232
MS.gene059867.t1	AT5G08790	64.072	167	54	2	10	171	3	168	4.95e-74	231
MS.gene059867.t1	AT1G61110	66.477	176	43	4	14	175	16	189	4.03e-73	230

Showing 1 to 10 of 147 entries

Previous1 2 3 4 5…15Next

Find 83 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGGTCGTCAATTTG+TGG	0.476369	2.2:+15392359	None:intergenic
AACAAGAAGCTCTTCATCAG+TGG	0.495470	2.2:+15393585	None:intergenic
AACCAAGTTGAGAATTCGTC+TGG	0.381998	2.2:-15392026	MS.gene059867:CDS
AACTTACTTGGAAGAACCCA+TGG	0.526899	2.2:+15393484	None:intergenic
ACAAATGAAGGTAGAAAAGT+TGG	0.415542	2.2:-15393222	MS.gene059867:CDS
ACAAGAAGCTCTTCATCAGT+GGG	0.569952	2.2:+15393586	None:intergenic
ACAAGGCCAAATAGAGTAGC+TGG	0.476630	2.2:-15393285	MS.gene059867:CDS
ACAGTAACAGGGTTTCAAGA+CGG	0.683973	2.2:-15392206	MS.gene059867:CDS
ACCAAGTTGAGAATTCGTCT+GGG	0.609603	2.2:-15392025	MS.gene059867:CDS
ACCCAGACGAATTCTCAACT+TGG	0.539808	2.2:+15392024	None:intergenic

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATGAAGGTAGAAAAGT+TGG	-	chr2.2:15392338-15392357	MS.gene059867:CDS	30.0%
ATTTCTTTAGTCCAAGAGAT+AGG	-	chr2.2:15392237-15392256	MS.gene059867:CDS	30.0%
CAATTTGGTAAAACAGCAAA+AGG	+	chr2.2:15392961-15392980	None:intergenic	30.0%
CGTTGTGAAATTAACTTACT+TGG	+	chr2.2:15392091-15392110	None:intergenic	30.0%
TAGGCTGATGATTTGAAAAT+GGG	-	chr2.2:15392614-15392633	MS.gene059867:intron	30.0%
AAACAATGGTCGTCAATTTG+TGG	+	chr2.2:15393204-15393223	None:intergenic	35.0%
AGAGTCCAATTGACATAATG+TGG	+	chr2.2:15393439-15393458	None:intergenic	35.0%
AGTCCAATTGACATAATGTG+GGG	+	chr2.2:15393437-15393456	None:intergenic	35.0%
ATCTTTACAAATTCGACCCA+TGG	-	chr2.2:15392059-15392078	MS.gene059867:CDS	35.0%
CTAGGCTGATGATTTGAAAA+TGG	-	chr2.2:15392613-15392632	MS.gene059867:intron	35.0%

Showing 1 to 10 of 123 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	15391911	15393671	15391911	ID=MS.gene059867
chr2.2	mRNA	15391911	15393671	15391911	ID=MS.gene059867.t1;Parent=MS.gene059867
chr2.2	exon	15393491	15393671	15393491	ID=MS.gene059867.t1.exon1;Parent=MS.gene059867.t1
chr2.2	CDS	15393491	15393671	15393491	ID=cds.MS.gene059867.t1;Parent=MS.gene059867.t1
chr2.2	exon	15393107	15393375	15393107	ID=MS.gene059867.t1.exon2;Parent=MS.gene059867.t1
chr2.2	CDS	15393107	15393375	15393107	ID=cds.MS.gene059867.t1;Parent=MS.gene059867.t1
chr2.2	exon	15391911	15392537	15391911	ID=MS.gene059867.t1.exon3;Parent=MS.gene059867.t1
chr2.2	CDS	15391911	15392537	15391911	ID=cds.MS.gene059867.t1;Parent=MS.gene059867.t1

Gene Sequence

>MS.gene059867

ATGGGAATTCAAGACAAAGATCCTCTTGCACAATTGAGTTTACCTCCTGGTTTTCGATTTTACCCCACTGATGAAGAGCTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTTTACAAATTCGACCCATGGGTTCTTCCAAGTAAGTTAATTTCACAACGAATTTGTTTTGTTAGAATCACTGTGAATCATCGTTATTTAAATAATTTGACCTATGTTTTATTCATATTAAAGTTGTGTGTGATTAATTTGTGTAGGTAAGGCAATTTTTGGGGAGAAAGAATGGTATTTCTTTAGTCCAAGAGATAGGAAGTATCCAAATGGGACAAGGCCAAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACTGGAACAGACAAGATTATAACAAATGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTTTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGACTACTTGACTCTTCACGAAACAACGGTGGCACCAAGGTATTATATACGTTCATTTTTTTTTTTAACTATTTAACTATTTCAAATGTCTAAATTTAGCATTACTAATTTTTACTTAGTATATACACAAATAATTTTAAATTGATCACAATTCTCAATATTACAAAGAATTTTATCTAGGCTGATGATTTGAAAATGGGCAATCAAATATTGAGAATCACAACAAATTTTTTTAAAAAATTGGGTGATACATGGTTTAAATGAATTGCACTCATACATACACGTCAATATTTGATATTTCAAAGGATTAATATTAAATTTTTTTCTCCTTCTTAAAAAAATAATAAATATTTTTTTAATAATTCCTAAAAATTTTGTTGTTCAATCATGATCACAAATTTTATTTTTTGAAACCCTTTGCCAATTATCAAACTCTTTTTTAAACCTTGTCACCATATTATTTATTTCACAATTCACTTCCTCTTGTTCCATTTTAAAATATTCACTTCCTCTGTTTTTGACCTTTTGCTGTTTTACCAAATTGTTTTATGGGATAATTATTATTATTACAACGTTAATTTGTTGAAATTTTTGTTCTTGAATTGCAGCTAGATGATTGGGTTCTATGTCGTATCTACAAGAAAAATTCAAGTGCACAAAAACCTATTCCAAATGGCGTCGTTTCAAGCAGAGAATACACTCAATACAGCAACGGTTCATCGTCTTCTTCATCATCCCACCTCGACGACGTTCTTGAATCACTTCCACAAATTGACGACCATTGTTTCAAGCTGCCACGTGTCAACTCGCTAAGAACGGCGCAACATCACCAACAAGAAGAGAAGATGAATCTTCAAAATTTAAATGCTGCAAATAATAATTTCATGGATTGGTCTAATTCATCATCGATTTTGAACACAGTAACAGGGTTTCAAGACGGTCAAACTCAAGGAATGATGAATTTTAGTGGTTGCAATGACCTTTATGTCCCTTCTATCCCCACATTATGTCAATTGGACTCTTCCGTTATCACGGAGAAAACTAGCAAGATACCCGTGCATCCGACTGAAGAGGAGGTTCAAAGTGGGGCGAGAGCAAACCAAGTTGAGAATTCGTCTGGGTTTTTTCAACGTGGTTCAAATGATTTTACTCAAGGAATGGGATACACTAATCCGGTTGACCCGTTTGGGTTTAGGTACCCGGTTCAACCAGTTGGATTTGGATTCCAACAATGA

Protein sequence

>MS.gene059867.t1

MGIQDKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKPIPNGVVSSREYTQYSNGSSSSSSSHLDDVLESLPQIDDHCFKLPRVNSLRTAQHHQQEEKMNLQNLNAANNNFMDWSNSSSILNTVTGFQDGQTQGMMNFSGCNDLYVPSIPTLCQLDSSVITEKTSKIPVHPTEEEVQSGARANQVENSSGFFQRGSNDFTQGMGYTNPVDPFGFRYPVQPVGFGFQQ