Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069434.t1 | XP_013463898.1 | 94.9 | 392 | 19 | 1 | 1 | 391 | 1 | 392 | 2.30E-178 | 635.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069434.t1 | Q5ZMS6 | 35.1 | 191 | 110 | 4 | 17 | 207 | 9 | 185 | 5.2e-22 | 107.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069434.t1 | A0A072V9B3 | 94.9 | 392 | 19 | 1 | 1 | 391 | 1 | 392 | 1.6e-178 | 635.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059146 | MS.gene069434 | 0.803056 | 4.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069434.t1 | MTR_2g050180 | 97.254 | 437 | 11 | 1 | 1 | 436 | 1 | 437 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069434.t1 | AT5G19950 | 42.891 | 422 | 213 | 9 | 4 | 409 | 8 | 417 | 4.65e-96 | 296 |
| MS.gene069434.t1 | AT5G19950 | 42.891 | 422 | 213 | 9 | 4 | 409 | 8 | 417 | 4.65e-96 | 296 |
| MS.gene069434.t1 | AT5G19950 | 42.654 | 422 | 212 | 9 | 4 | 409 | 8 | 415 | 3.70e-95 | 293 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCAACCCTTCCTTCTT+AGG | 0.124620 | 2.2:-30582300 | None:intergenic |
| AAGAAGGAAGGGTTGGTATT+TGG | 0.198065 | 2.2:+30582303 | MS.gene069434:CDS |
| GGAAGAAACCGATGATTTAA+AGG | 0.229203 | 2.2:+30582324 | MS.gene069434:CDS |
| AAATCGGAAAGAAGATATTT+TGG | 0.242283 | 2.2:+30591409 | MS.gene069434:CDS |
| AAATATCTTCTTTCCGATTT+CGG | 0.244488 | 2.2:-30591406 | None:intergenic |
| AGAGGGAGGGGAAGGGGTAG+AGG | 0.255121 | 2.2:+30593049 | MS.gene069434:CDS |
| CCTAAAGCATTGACTGTATT+AGG | 0.268079 | 2.2:+30583673 | MS.gene069434:CDS |
| AGGGGAAGGGGTAGAGGAAG+AGG | 0.271144 | 2.2:+30593055 | MS.gene069434:CDS |
| CCTAATACAGTCAATGCTTT+AGG | 0.274594 | 2.2:-30583673 | None:intergenic |
| AGAGGAAGAGGGAGGGGAAG+GGG | 0.277896 | 2.2:+30593043 | MS.gene069434:CDS |
| GTAAAGGAATCACCTTCTTT+TGG | 0.305724 | 2.2:-30591738 | None:intergenic |
| GAAAACAAACTTAGTAGTTC+AGG | 0.317677 | 2.2:+30591470 | MS.gene069434:CDS |
| AAGCTAGAGGATCGTGATTC+AGG | 0.319089 | 2.2:+30583772 | MS.gene069434:CDS |
| CCATGGTCCCAAAGTTCTTC+AGG | 0.333779 | 2.2:+30582492 | MS.gene069434:CDS |
| AGGGGTAGAGGAAGAGGGAG+GGG | 0.336283 | 2.2:+30593037 | MS.gene069434:CDS |
| AGGGGTAGAGGAAGAGGGAG+GGG | 0.336283 | 2.2:+30593061 | MS.gene069434:CDS |
| GAAGGGGTAGAGGAAGAGGG+AGG | 0.339415 | 2.2:+30593035 | MS.gene069434:CDS |
| GAAGGGGTAGAGGAAGAGGG+AGG | 0.339415 | 2.2:+30593059 | MS.gene069434:CDS |
| GAAGACAAGCCTAGTAGTTC+GGG | 0.351843 | 2.2:+30591708 | MS.gene069434:CDS |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.352804 | 2.2:+30593031 | MS.gene069434:CDS |
| TTACCTGACAATGTTGTTCC+TGG | 0.353424 | 2.2:+30582850 | MS.gene069434:CDS |
| AGAGGTAGAGGAAGGGGTAG+AGG | 0.358047 | 2.2:+30593025 | MS.gene069434:CDS |
| CTTTCCGATTTCGGTCTTGC+TGG | 0.360863 | 2.2:-30591397 | None:intergenic |
| ATTTGAACCTGAAGAACTTT+GGG | 0.372361 | 2.2:-30582499 | None:intergenic |
| CAATGTTGTTCCTGGTACTA+AGG | 0.388113 | 2.2:+30582858 | MS.gene069434:CDS |
| GTAGAGGAAGAGGGAGGGGA+AGG | 0.393464 | 2.2:+30593041 | MS.gene069434:CDS |
| ATCTGATGATAGCTATCAAA+TGG | 0.397695 | 2.2:+30592991 | MS.gene069434:CDS |
| AATTTGAACCTGAAGAACTT+TGG | 0.406589 | 2.2:-30582500 | None:intergenic |
| AACTTAGTAGTTCAGGGTTA+AGG | 0.406999 | 2.2:+30591477 | MS.gene069434:CDS |
| GGATGTCGACCATGCTGATA+TGG | 0.407274 | 2.2:-30592605 | None:intergenic |
| AGAAGTGGTAAGCCCATTGC+TGG | 0.416032 | 2.2:+30591341 | MS.gene069434:CDS |
| GGAAGAGGAGGAAGAGGTAG+AGG | 0.423317 | 2.2:+30593013 | MS.gene069434:CDS |
| TGAAGACAAGCCTAGTAGTT+CGG | 0.424672 | 2.2:+30591707 | MS.gene069434:CDS |
| ATATCCAGCAAGACCGAAAT+CGG | 0.426444 | 2.2:+30591393 | MS.gene069434:CDS |
| ATTTAACCTCGAACATTCTC+AGG | 0.427187 | 2.2:+30592787 | MS.gene069434:CDS |
| GGAGGAAGAGGTAGAGGAAG+GGG | 0.439587 | 2.2:+30593019 | MS.gene069434:CDS |
| GGCCTTGTCCCCGAACTACT+AGG | 0.439945 | 2.2:-30591717 | None:intergenic |
| ATACCAACCCTTCCTTCTTA+GGG | 0.441652 | 2.2:-30582299 | None:intergenic |
| TAGAGGAAGAGGGAGGGGAA+GGG | 0.443971 | 2.2:+30593042 | MS.gene069434:CDS |
| TTTCAGCTCGTTCTGGAGGC+GGG | 0.444280 | 2.2:-30591451 | None:intergenic |
| TCCTCCATTTGTGAAGCTGC+AGG | 0.445152 | 2.2:+30583801 | MS.gene069434:CDS |
| AAGGGGTAGAGGAAGAGGGA+GGG | 0.445197 | 2.2:+30593036 | MS.gene069434:CDS |
| AAGGGGTAGAGGAAGAGGGA+GGG | 0.445197 | 2.2:+30593060 | MS.gene069434:CDS |
| TTGCATTGGACAGATTCGTT+TGG | 0.451626 | 2.2:+30583609 | MS.gene069434:intron |
| CCAACCTGCAGCTTCACAAA+TGG | 0.454450 | 2.2:-30583805 | None:intergenic |
| CGGTCTTGCTGGATATCAGT+TGG | 0.455318 | 2.2:-30591386 | None:intergenic |
| ACTTGGCTCCGATGGATTTG+AGG | 0.457266 | 2.2:-30582429 | None:intergenic |
| GTGTCTTGATTAGGTACAAA+GGG | 0.460261 | 2.2:+30592910 | MS.gene069434:intron |
| TCCTAGGGGTCGAGGACGTA+GGG | 0.462415 | 2.2:+30592625 | MS.gene069434:CDS |
| GGGGAAGGGGTAGAGGAAGA+GGG | 0.462532 | 2.2:+30593056 | MS.gene069434:CDS |
| CAAGCTATACCACTATGAAC+TGG | 0.462609 | 2.2:-30583643 | None:intergenic |
| GGTACGAAGAAGAGATGGTT+CGG | 0.463509 | 2.2:-30582458 | None:intergenic |
| GAGGAGGAAGAGGTAGAGGA+AGG | 0.464321 | 2.2:+30593017 | MS.gene069434:CDS |
| AGATGGTTCGGGTAAGGACT+TGG | 0.464571 | 2.2:-30582446 | None:intergenic |
| AAAACAAACTTAGTAGTTCA+GGG | 0.466850 | 2.2:+30591471 | MS.gene069434:CDS |
| GGTGTTCGAGTCTGTTGAAT+CGG | 0.473824 | 2.2:+30582390 | MS.gene069434:CDS |
| GAGCATGTTCACATATGAAA+AGG | 0.477694 | 2.2:+30592967 | MS.gene069434:CDS |
| TTCAATCACTATATGAAGAA+TGG | 0.483666 | 2.2:+30583704 | MS.gene069434:CDS |
| GAGGAAGGGGTAGAGGAAGA+GGG | 0.484968 | 2.2:+30593032 | MS.gene069434:CDS |
| GCTCTAATAGCTCCAGCAAT+GGG | 0.486502 | 2.2:-30591353 | None:intergenic |
| ATCAGCATGGTCGACATCCT+AGG | 0.487964 | 2.2:+30592609 | MS.gene069434:CDS |
| GGTCGAGGACGTAGGGGAAA+GGG | 0.488449 | 2.2:+30592632 | MS.gene069434:CDS |
| AGCTCGTTCTGGAGGCGGGA+TGG | 0.491950 | 2.2:-30591447 | None:intergenic |
| GGGTAAGGACTTGGCTCCGA+TGG | 0.492698 | 2.2:-30582437 | None:intergenic |
| AGGAGGAAGAGGTAGAGGAA+GGG | 0.496411 | 2.2:+30593018 | MS.gene069434:CDS |
| GGGTCGAGGACGTAGGGGAA+AGG | 0.496809 | 2.2:+30592631 | MS.gene069434:CDS |
| ACAGACTCGAACACCTTGGA+AGG | 0.497116 | 2.2:-30582382 | None:intergenic |
| GTACCAGGAACAACATTGTC+AGG | 0.509712 | 2.2:-30582853 | None:intergenic |
| GGATGAAGTTGTATTTACTC+TGG | 0.510650 | 2.2:+30592664 | MS.gene069434:CDS |
| CAAATGGGAAGAGGAGGAAG+AGG | 0.510724 | 2.2:+30593007 | MS.gene069434:CDS |
| ATTAGGTACAAAGGGGTCCT+CGG | 0.512191 | 2.2:+30592918 | MS.gene069434:intron |
| CGTACCACTTCTTATCTCCA+TGG | 0.513656 | 2.2:+30582475 | MS.gene069434:CDS |
| TCAGCATGGTCGACATCCTA+GGG | 0.514255 | 2.2:+30592610 | MS.gene069434:CDS |
| AAGAAGAGATGGTTCGGGTA+AGG | 0.516042 | 2.2:-30582452 | None:intergenic |
| TTAGGTACAAAGGGGTCCTC+GGG | 0.517967 | 2.2:+30592919 | MS.gene069434:intron |
| GATTATTGCCTTTAAATCAT+CGG | 0.520323 | 2.2:-30582332 | None:intergenic |
| CCTGAAGAACTTTGGGACCA+TGG | 0.526657 | 2.2:-30582492 | None:intergenic |
| CCATTTGTGAAGCTGCAGGT+TGG | 0.529359 | 2.2:+30583805 | MS.gene069434:CDS |
| TACAGACCTGAGAATGTTCG+AGG | 0.530217 | 2.2:-30592793 | None:intergenic |
| AGCCTAGTAGTTCGGGGACA+AGG | 0.537297 | 2.2:+30591715 | MS.gene069434:CDS |
| AGTTCAGGGTTAAGGCCAAA+AGG | 0.538749 | 2.2:+30591485 | MS.gene069434:CDS |
| AATAGAAACCCTAAGAAGGA+AGG | 0.539886 | 2.2:+30582291 | MS.gene069434:CDS |
| TCTGATGATAGCTATCAAAT+GGG | 0.542787 | 2.2:+30592992 | MS.gene069434:CDS |
| GCAGGAGAGTTCGAGAGACT+CGG | 0.548996 | 2.2:+30582255 | MS.gene069434:CDS |
| GTGTCTCACGGATGGTCACT+CGG | 0.550809 | 2.2:+30582792 | MS.gene069434:CDS |
| CCCCTACGTCCTCGACCCCT+AGG | 0.553539 | 2.2:-30592626 | None:intergenic |
| GTACGAAGAAGAGATGGTTC+GGG | 0.554621 | 2.2:-30582457 | None:intergenic |
| AAACCCTAAGAAGGAAGGGT+TGG | 0.555276 | 2.2:+30582296 | MS.gene069434:CDS |
| GAACACCTTGGAAGGGTCAT+CGG | 0.556034 | 2.2:-30582374 | None:intergenic |
| GGTCGACATCCTAGGGGTCG+AGG | 0.557198 | 2.2:+30592617 | MS.gene069434:CDS |
| AGCTATCAAATGGGAAGAGG+AGG | 0.557811 | 2.2:+30593001 | MS.gene069434:CDS |
| TCAACAGATATCTTCTGTGA+GGG | 0.559722 | 2.2:+30582705 | MS.gene069434:intron |
| GATAGCTATCAAATGGGAAG+AGG | 0.563674 | 2.2:+30592998 | MS.gene069434:CDS |
| GGCTCCGATGGATTTGAGGT+CGG | 0.568061 | 2.2:-30582425 | None:intergenic |
| GCAGATTATAACTCTAGAAG+TGG | 0.571193 | 2.2:+30591326 | MS.gene069434:CDS |
| AGCTCTAATAGCTCCAGCAA+TGG | 0.572577 | 2.2:-30591354 | None:intergenic |
| CAGCAATAGAAACCCTAAGA+AGG | 0.576577 | 2.2:+30582287 | MS.gene069434:CDS |
| GCCGTGATGAGGATCTTGCT+TGG | 0.584059 | 2.2:+30592750 | MS.gene069434:CDS |
| AATAAAGTTCCAGTTCATAG+TGG | 0.588272 | 2.2:+30583634 | MS.gene069434:CDS |
| GGAAGGGTCATCGGCTAGTG+CGG | 0.594824 | 2.2:-30582365 | None:intergenic |
| TGTGTCTTGATTAGGTACAA+AGG | 0.600593 | 2.2:+30592909 | MS.gene069434:intron |
| ACCTGCAGCTTCACAAATGG+AGG | 0.601511 | 2.2:-30583802 | None:intergenic |
| TTCAACAGACTCGAACACCT+TGG | 0.603744 | 2.2:-30582386 | None:intergenic |
| ATAGAAACCCTAAGAAGGAA+GGG | 0.603999 | 2.2:+30582292 | MS.gene069434:CDS |
| CTGCAGGTTGGATCTACCAC+AGG | 0.605693 | 2.2:+30583817 | MS.gene069434:CDS |
| TTCTCTGCTTCAGATTCCCG+AGG | 0.606202 | 2.2:-30592935 | None:intergenic |
| TCGGGGACAAGGCCAAAAGA+AGG | 0.606724 | 2.2:+30591726 | MS.gene069434:CDS |
| ATCCTAGGGGTCGAGGACGT+AGG | 0.608387 | 2.2:+30592624 | MS.gene069434:CDS |
| GAAGTGGTACGAAGAAGAGA+TGG | 0.609296 | 2.2:-30582463 | None:intergenic |
| TGCAGCTTCACAAATGGAGG+AGG | 0.610308 | 2.2:-30583799 | None:intergenic |
| TGACACATTACCTTAGTACC+AGG | 0.616884 | 2.2:-30582868 | None:intergenic |
| TAGGGGAAAGGGTCAAGAAG+AGG | 0.620261 | 2.2:+30592643 | MS.gene069434:CDS |
| AATTCCGACCTCAAATCCAT+CGG | 0.622960 | 2.2:+30582421 | MS.gene069434:CDS |
| TCTAGATATTAGCCGTGATG+AGG | 0.626500 | 2.2:+30592739 | MS.gene069434:CDS |
| CCTAGGGGTCGAGGACGTAG+GGG | 0.627085 | 2.2:+30592626 | MS.gene069434:CDS |
| CTAAGACTGTGTCTCACGGA+TGG | 0.628902 | 2.2:+30582784 | MS.gene069434:CDS |
| TGGAATATGAGTGTATTCAA+CGG | 0.629200 | 2.2:-30582824 | None:intergenic |
| ACTAGCCGATGACCCTTCCA+AGG | 0.633849 | 2.2:+30582369 | MS.gene069434:CDS |
| ACTTCTAAGACTGTGTCTCA+CGG | 0.635352 | 2.2:+30582780 | MS.gene069434:CDS |
| TTCAACAGATATCTTCTGTG+AGG | 0.642764 | 2.2:+30582704 | MS.gene069434:intron |
| AAAGCATTGACTGTATTAGG+AGG | 0.643444 | 2.2:+30583676 | MS.gene069434:CDS |
| GTCATCTATAAGGAAGCTAG+AGG | 0.646105 | 2.2:+30583759 | MS.gene069434:CDS |
| GGGACCATGGAGATAAGAAG+TGG | 0.655191 | 2.2:-30582479 | None:intergenic |
| TTGAATCAACCATATCAGCA+TGG | 0.658756 | 2.2:+30592596 | MS.gene069434:CDS |
| GAGCTATTAGAGCTGAGATG+AGG | 0.662902 | 2.2:+30591363 | MS.gene069434:CDS |
| AATATGTCAAGAAATTCAAG+TGG | 0.677205 | 2.2:+30582751 | MS.gene069434:CDS |
| GCCAAGCAAGATCCTCATCA+CGG | 0.684569 | 2.2:-30592751 | None:intergenic |
| CTAGAGGATCGTGATTCAGG+TGG | 0.690835 | 2.2:+30583775 | MS.gene069434:CDS |
| CAGACTCGAACACCTTGGAA+GGG | 0.692613 | 2.2:-30582381 | None:intergenic |
| GGACATATCTATGAGCAGTG+TGG | 0.706847 | 2.2:+30582726 | MS.gene069434:CDS |
| AAGACAAGCCTAGTAGTTCG+GGG | 0.714772 | 2.2:+30591709 | MS.gene069434:CDS |
| CAGCATGGTCGACATCCTAG+GGG | 0.720955 | 2.2:+30592611 | MS.gene069434:CDS |
| AAAATCTTCTAATAATGACG+AGG | 0.725137 | 2.2:+30592715 | MS.gene069434:CDS |
| TGTCTTGATTAGGTACAAAG+GGG | 0.726179 | 2.2:+30592911 | MS.gene069434:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 30582253 | 30593090 | 30582253 | ID=MS.gene069434 |
| chr2.2 | mRNA | 30582253 | 30593090 | 30582253 | ID=MS.gene069434.t1;Parent=MS.gene069434 |
| chr2.2 | exon | 30582253 | 30582513 | 30582253 | ID=MS.gene069434.t1.exon1;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30582253 | 30582513 | 30582253 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| chr2.2 | exon | 30582712 | 30582879 | 30582712 | ID=MS.gene069434.t1.exon2;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30582712 | 30582879 | 30582712 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| chr2.2 | exon | 30583622 | 30583838 | 30583622 | ID=MS.gene069434.t1.exon3;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30583622 | 30583838 | 30583622 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| chr2.2 | exon | 30591321 | 30591506 | 30591321 | ID=MS.gene069434.t1.exon4;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30591321 | 30591506 | 30591321 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| chr2.2 | exon | 30591700 | 30591747 | 30591700 | ID=MS.gene069434.t1.exon5;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30591700 | 30591747 | 30591700 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| chr2.2 | exon | 30592540 | 30592808 | 30592540 | ID=MS.gene069434.t1.exon6;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30592540 | 30592808 | 30592540 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| chr2.2 | exon | 30592923 | 30593090 | 30592923 | ID=MS.gene069434.t1.exon7;Parent=MS.gene069434.t1 |
| chr2.2 | CDS | 30592923 | 30593090 | 30592923 | ID=cds.MS.gene069434.t1;Parent=MS.gene069434.t1 |
| Gene Sequence |
| Protein sequence |