AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059146


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059146.t1 MTR_1g008200 97.635 296 6 1 1 296 1 295 0.0 589
MS.gene059146.t1 MTR_1g008195 82.828 297 43 3 1 296 1 290 1.55e-157 441
MS.gene059146.t1 MTR_1g008170 79.599 299 47 3 1 295 1 289 6.01e-153 429
MS.gene059146.t1 MTR_6g065550 75.397 126 19 3 10 134 50 164 7.88e-37 129
MS.gene059146.t1 MTR_3g463620 30.097 103 71 1 139 241 49 150 9.88e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059146.t1 AT5G53400 59.582 287 100 2 25 296 19 304 7.95e-116 336
MS.gene059146.t1 AT4G27890 56.250 304 114 6 1 296 1 293 1.70e-108 317
MS.gene059146.t1 AT5G58740 25.949 158 81 3 139 296 21 142 8.94e-14 68.2

Find 74 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATGATTTCCTGTTTC+TGG 0.058297 1.2:+11510611 None:intergenic
TAAAAGCTTACATCAATAAT+TGG 0.250303 1.2:+11511540 None:intergenic
ATGAGGTTTGGGTTTCTTCT+TGG 0.317575 1.2:+11513158 None:intergenic
TGATCAGAGGCAGAAGTCTA+TGG 0.321181 1.2:-11510656 MS.gene059146:CDS
TTCTGGAGCTCCTCACTTGT+TGG 0.356328 1.2:+11510628 None:intergenic
TTGGGTTTCTTCTTGGTAAT+CGG 0.361888 1.2:+11513165 None:intergenic
TCAAGCCTGATGAATGTTAC+TGG 0.367377 1.2:-11511331 MS.gene059146:CDS
ATCCATACCATTACCCTGAT+TGG 0.375160 1.2:+11511698 None:intergenic
AGCAGCAATCTTAGCTTTCT+CGG 0.384597 1.2:+11512937 None:intergenic
CGAATCATTGTCGAAGAAAT+CGG 0.389616 1.2:+11513024 None:intergenic
TTGATGGACAGTTCCCAATC+AGG 0.395904 1.2:-11511712 MS.gene059146:intron
TCAACAGTCTGTCGAGTCTC+AGG 0.400798 1.2:+11510990 None:intergenic
TCACCAAGTTTGCTGCTCTC+AGG 0.401717 1.2:+11511020 None:intergenic
GTTGAGAAGAAGATGAGGTT+TGG 0.402027 1.2:+11513146 None:intergenic
AGAAAAGCGGTTGGATTTGA+AGG 0.414688 1.2:+11513082 None:intergenic
TGGATCTGGAGAAATATTCT+TGG 0.418168 1.2:-11511680 MS.gene059146:CDS
CATGAAGAAATTTATGAGTC+AGG 0.419859 1.2:-11510596 MS.gene059146:intron
GATGGAGAAAGTGGCTTAGC+AGG 0.426627 1.2:-11512821 MS.gene059146:intron
TTTAACCAAGCATGATCAAA+TGG 0.428418 1.2:-11511099 MS.gene059146:CDS
GAGAAGAAGGATGGAGAAAG+TGG 0.429003 1.2:-11512830 MS.gene059146:CDS
AAGTGAGGAGCTCCAGAAAC+AGG 0.431963 1.2:-11510623 MS.gene059146:CDS
TTGAGAAGAAGATGAGGTTT+GGG 0.435475 1.2:+11513147 None:intergenic
CATCTAAAAGTTGGAATCAA+AGG 0.443557 1.2:-11511570 MS.gene059146:CDS
GAACCTGAGAGCAGCAAACT+TGG 0.444776 1.2:-11511023 MS.gene059146:CDS
CCAGTCCATTTGATCATGCT+TGG 0.448786 1.2:+11511094 None:intergenic
AAGAAGAACCATCTAAAAGT+TGG 0.449134 1.2:-11511579 MS.gene059146:CDS
TGAGAAGGAAGATGAGAAGA+AGG 0.450742 1.2:-11512843 MS.gene059146:CDS
CGATTTCTTCGACAATGATT+CGG 0.451771 1.2:-11513023 MS.gene059146:CDS
AGCTATGGAGGTAGATGAGA+AGG 0.453896 1.2:-11512858 MS.gene059146:CDS
TCAGGGTAATGGTATGGATC+TGG 0.458750 1.2:-11511694 MS.gene059146:CDS
GGCGGCTGCTGTTGCTGCGG+CGG 0.461162 1.2:-11512888 MS.gene059146:CDS
AAGGAAGATGAGAAGAAGGA+TGG 0.482846 1.2:-11512839 MS.gene059146:CDS
AAGGTGGAAGAGAACGGAAT+AGG 0.487694 1.2:+11513109 None:intergenic
TCCATACCATTACCCTGATT+GGG 0.488514 1.2:+11511699 None:intergenic
ATGCTCCAGTAACATTCATC+AGG 0.490196 1.2:+11511326 None:intergenic
CGACAATGATTCGGCTGAGA+AGG 0.493721 1.2:-11513014 MS.gene059146:CDS
ATCTAAAAGTTGGAATCAAA+GGG 0.502699 1.2:-11511569 MS.gene059146:CDS
GGAGCTCCTCACTTGTTGGA+AGG 0.509413 1.2:+11510632 None:intergenic
TGGTGGAAATGTCTTGTTAA+GGG 0.518276 1.2:-11511074 MS.gene059146:CDS
TCCCAATCAGGGTAATGGTA+TGG 0.518546 1.2:-11511700 MS.gene059146:CDS
GCATTCGAGAAGTCCATCTC+CGG 0.524232 1.2:+11510468 None:intergenic
AGAGAAGGCGAAGGTTGATA+AGG 0.527997 1.2:-11512912 MS.gene059146:CDS
TGTATTGCAGCATCCGGAGA+TGG 0.529847 1.2:-11510481 MS.gene059146:intron
TCTGTCGAGTCTCAGGATCC+AGG 0.530996 1.2:+11510997 None:intergenic
ATCCGCCGTTCGCGCTGTGA+AGG 0.537892 1.2:-11512984 MS.gene059146:CDS
GTGAATGTTCCAGTGCCAAA+TGG 0.540930 1.2:-11511633 MS.gene059146:CDS
TGATGGACAGTTCCCAATCA+GGG 0.541528 1.2:-11511711 MS.gene059146:intron
TGCCAAATGGAACAAAATCA+AGG 0.549463 1.2:-11511620 MS.gene059146:CDS
GAGCAGCAAACTTGGTGACC+TGG 0.549952 1.2:-11511015 MS.gene059146:CDS
AAGCTTACATCAATAATTGG+TGG 0.551582 1.2:+11511543 None:intergenic
ACAGTTCCCAATCAGGGTAA+TGG 0.556894 1.2:-11511705 MS.gene059146:intron
GATCAGAGGCAGAAGTCTAT+GGG 0.558052 1.2:-11510655 MS.gene059146:CDS
GATGAATGTTACTGGAGCAT+AGG 0.561295 1.2:-11511323 MS.gene059146:intron
CAATGATTCGGCTGAGAAGG+TGG 0.562539 1.2:-11513011 MS.gene059146:CDS
CTGGTGGAAATGTCTTGTTA+AGG 0.563095 1.2:-11511075 MS.gene059146:CDS
TAAGATTGCTGCTGAAGAGA+AGG 0.565303 1.2:-11512927 MS.gene059146:CDS
GGCGGCGGCTGCTGTTGCTG+CGG 0.565880 1.2:-11512891 MS.gene059146:CDS
TGTATTCGACTTCATCGCTA+AGG 0.567639 1.2:-11513053 MS.gene059146:CDS
ACAGACTGTTGAAAAGATGA+TGG 0.576647 1.2:-11510979 MS.gene059146:intron
AGCATGATCAAATGGACTGG+TGG 0.576780 1.2:-11511091 MS.gene059146:CDS
TGGATTTGAAGGATCGAAGG+TGG 0.582135 1.2:+11513093 None:intergenic
TTCTTTAACAGTTTGATCAG+AGG 0.586849 1.2:-11510669 MS.gene059146:intron
CCAAGCATGATCAAATGGAC+TGG 0.599013 1.2:-11511094 MS.gene059146:CDS
GGCGAAGGTTGATAAGGCGG+CGG 0.599571 1.2:-11512906 MS.gene059146:CDS
GGATCGAAGGTGGAAGAGAA+CGG 0.602076 1.2:+11513103 None:intergenic
GGTTGGATTTGAAGGATCGA+AGG 0.613022 1.2:+11513090 None:intergenic
TACCTTCACAGCGCGAACGG+CGG 0.622007 1.2:+11512982 None:intergenic
CTTTACCTTCACAGCGCGAA+CGG 0.628341 1.2:+11512979 None:intergenic
TGCTGCTGAAGAGAAGGCGA+AGG 0.633806 1.2:-11512921 MS.gene059146:CDS
GAAGGCGAAGGTTGATAAGG+CGG 0.663476 1.2:-11512909 MS.gene059146:CDS
TGTGAAGGTAAAGAAAGCTA+AGG 0.664999 1.2:-11512969 MS.gene059146:CDS
TGCGGCGGAGAAGAAAGCTA+TGG 0.665095 1.2:-11512873 MS.gene059146:CDS
TATGGGCCTTCCAACAAGTG+AGG 0.673276 1.2:-11510638 MS.gene059146:CDS
GGCGGAGAAGAAAGCTATGG+AGG 0.684045 1.2:-11512870 MS.gene059146:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAATAAAAAAAACTA+GGG + chr1.2:11510876-11510895 None:intergenic 10.0%
!! AAAAAATTCAGATATATAGT+TGG + chr1.2:11511866-11511885 None:intergenic 15.0%
!! ATTGTAAATTATCAAAATGA+TGG - chr1.2:11511740-11511759 MS.gene059146:intron 15.0%
!! GTAAAGAAATAAAAAAAACT+AGG + chr1.2:11510877-11510896 None:intergenic 15.0%
!! TTGATTGTTTATTAAATCTA+TGG - chr1.2:11511276-11511295 MS.gene059146:intron 15.0%
!!! ATTATTTTAAAATTTCTCAG+GGG - chr1.2:11512263-11512282 MS.gene059146:intron 15.0%
!!! CATTATTTTAAAATTTCTCA+GGG - chr1.2:11512262-11512281 MS.gene059146:intron 15.0%
!!! TCATTATTTTAAAATTTCTC+AGG - chr1.2:11512261-11512280 MS.gene059146:intron 15.0%
!!! TTTTAAACTTGTGAAAATTT+TGG - chr1.2:11512413-11512432 MS.gene059146:intron 15.0%
!! GAAATTTATGAGATAACAAT+GGG - chr1.2:11510964-11510983 MS.gene059146:intron 20.0%
!! TAAAAGCTTACATCAATAAT+TGG + chr1.2:11512096-11512115 None:intergenic 20.0%
!! TGAAATTTATGAGATAACAA+TGG - chr1.2:11510963-11510982 MS.gene059146:intron 20.0%
!! TTAAAATAATGAATCAGCAA+AGG + chr1.2:11512253-11512272 None:intergenic 20.0%
!! TTTAACTATTCATTAGCTAA+TGG - chr1.2:11511813-11511832 MS.gene059146:intron 20.0%
!!! AAATTATCAAAATGATGGAA+TGG - chr1.2:11511745-11511764 MS.gene059146:intron 20.0%
!!! AGATTTAAATAACACTGTTT+TGG - chr1.2:11512898-11512917 MS.gene059146:CDS 20.0%
!!! TACTTAATATAACTTGCATT+TGG - chr1.2:11512711-11512730 MS.gene059146:intron 20.0%
!!! TATGTATCTATTCTTTTGTT+GGG - chr1.2:11512782-11512801 MS.gene059146:intron 20.0%
!!! TTATTTTAAAATTTCTCAGG+GGG - chr1.2:11512264-11512283 MS.gene059146:intron 20.0%
! AGAAGCAATACAAAAATCAA+AGG + chr1.2:11513067-11513086 None:intergenic 25.0%
! ATAATCGAATAGAGATAACT+TGG - chr1.2:11512843-11512862 MS.gene059146:CDS 25.0%
! ATAATTCATTAGGATCATGA+TGG - chr1.2:11512381-11512400 MS.gene059146:intron 25.0%
! ATCAAACTGTTAAAGAATAC+AGG + chr1.2:11512961-11512980 None:intergenic 25.0%
! ATCATGATCCTAATGAATTA+TGG + chr1.2:11512382-11512401 None:intergenic 25.0%
! ATCTAAAAGTTGGAATCAAA+GGG - chr1.2:11512064-11512083 MS.gene059146:intron 25.0%
! ATCTATATCACAAAGACTTT+CGG - chr1.2:11511509-11511528 MS.gene059146:intron 25.0%
! GAATTATGGTCACTTAAAAA+GGG + chr1.2:11512368-11512387 None:intergenic 25.0%
! GTTTCTATTACCAAAAAATG+TGG + chr1.2:11511475-11511494 None:intergenic 25.0%
! TAAATATGCCAAAATTGCTA+GGG - chr1.2:11511138-11511157 MS.gene059146:intron 25.0%
! TAGATGATAAACCAATGATA+AGG - chr1.2:11511322-11511341 MS.gene059146:intron 25.0%
! TCAAACAAACTAAAAATTCC+AGG + chr1.2:11512217-11512236 None:intergenic 25.0%
! TCAAACTGTTAAAGAATACA+GGG + chr1.2:11512960-11512979 None:intergenic 25.0%
! TGAATTATGGTCACTTAAAA+AGG + chr1.2:11512369-11512388 None:intergenic 25.0%
! TGTATCATATTGTATTGCTA+TGG - chr1.2:11511034-11511053 MS.gene059146:CDS 25.0%
! TTAAATATGCCAAAATTGCT+AGG - chr1.2:11511137-11511156 MS.gene059146:intron 25.0%
! TTAAGTGACCATAATTCATT+AGG - chr1.2:11512371-11512390 MS.gene059146:intron 25.0%
!! ACACTCAATGCTTAAAATTT+TGG + chr1.2:11511384-11511403 None:intergenic 25.0%
!! CACTCAATGCTTAAAATTTT+GGG + chr1.2:11511383-11511402 None:intergenic 25.0%
!! GTATGTATCTATTCTTTTGT+TGG - chr1.2:11512781-11512800 MS.gene059146:intron 25.0%
!!! TATGCATATACCACATTTTT+TGG - chr1.2:11511462-11511481 MS.gene059146:intron 25.0%
!!! TTTAAAACCTATTTTTGCAG+AGG - chr1.2:11512489-11512508 MS.gene059146:intron 25.0%
AAAATGTGGTATATGCATAG+TGG + chr1.2:11511461-11511480 None:intergenic 30.0%
AAACACAATCAAATCAGAGA+GGG + chr1.2:11511696-11511715 None:intergenic 30.0%
AAATATGCCAAAATTGCTAG+GGG - chr1.2:11511139-11511158 MS.gene059146:intron 30.0%
AAGAAGAACCATCTAAAAGT+TGG - chr1.2:11512054-11512073 MS.gene059146:intron 30.0%
AAGCTTACATCAATAATTGG+TGG + chr1.2:11512093-11512112 None:intergenic 30.0%
CAAATTTACTAGATCGACAA+AGG + chr1.2:11513114-11513133 None:intergenic 30.0%
CATCTAAAAGTTGGAATCAA+AGG - chr1.2:11512063-11512082 MS.gene059146:intron 30.0%
CATGAAGAAATTTATGAGTC+AGG - chr1.2:11513037-11513056 MS.gene059146:CDS 30.0%
GAAAGTCTTTGTGATATAGA+TGG + chr1.2:11511510-11511529 None:intergenic 30.0%
GATACATACTTAAATGCAAC+AGG + chr1.2:11512770-11512789 None:intergenic 30.0%
GATGAAATGACAATAATCAC+CGG + chr1.2:11511198-11511217 None:intergenic 30.0%
TTCTTTAACAGTTTGATCAG+AGG - chr1.2:11512964-11512983 MS.gene059146:CDS 30.0%
TTTAACCAAGCATGATCAAA+TGG - chr1.2:11512534-11512553 MS.gene059146:intron 30.0%
! AACCTTGATTTTGTTCCATT+TGG + chr1.2:11512018-11512037 None:intergenic 30.0%
! AAGATGACATTCTAGTTGAA+TGG - chr1.2:11512817-11512836 MS.gene059146:intron 30.0%
! ATTTTATGTATTGCAGCATC+CGG - chr1.2:11513146-11513165 MS.gene059146:CDS 30.0%
! CTTTGATTCCAACTTTTAGA+TGG + chr1.2:11512065-11512084 None:intergenic 30.0%
! TACATCTTTGCTCTTTTTGA+TGG - chr1.2:11511905-11511924 MS.gene059146:intron 30.0%
! TTTGCTATGAACATTGTGTT+GGG - chr1.2:11510934-11510953 MS.gene059146:intron 30.0%
! TTTGTGATATAGATGGACTT+AGG + chr1.2:11511503-11511522 None:intergenic 30.0%
!! ATAACACTGTTTTGGATTTG+AGG - chr1.2:11512906-11512925 MS.gene059146:CDS 30.0%
!! GAATACATTTTCGAGAAAAG+CGG + chr1.2:11510567-11510586 None:intergenic 30.0%
!! GCAATTTTGGCATATTTAAC+CGG + chr1.2:11511136-11511155 None:intergenic 30.0%
!!! ACTTTTTGGGTGTTAATTTC+AGG + chr1.2:11512589-11512608 None:intergenic 30.0%
ACAGACTGTTGAAAAGATGA+TGG - chr1.2:11512654-11512673 MS.gene059146:intron 35.0%
AGAGTCTTCTGATTGTAACT+AGG - chr1.2:11512439-11512458 MS.gene059146:intron 35.0%
ATAACACAAACAAGTGTCAC+TGG + chr1.2:11512156-11512175 None:intergenic 35.0%
CAAACACAATCAAATCAGAG+AGG + chr1.2:11511697-11511716 None:intergenic 35.0%
CAACAGTAACTGCTATAACT+TGG + chr1.2:11512119-11512138 None:intergenic 35.0%
CGAATCATTGTCGAAGAAAT+CGG + chr1.2:11510612-11510631 None:intergenic 35.0%
CGATTTCTTCGACAATGATT+CGG - chr1.2:11510610-11510629 MS.gene059146:CDS 35.0%
TCTTCATGATTTCCTGTTTC+TGG + chr1.2:11513025-11513044 None:intergenic 35.0%
TGCCAAATGGAACAAAATCA+AGG - chr1.2:11512013-11512032 MS.gene059146:intron 35.0%
TGGATCTGGAGAAATATTCT+TGG - chr1.2:11511953-11511972 MS.gene059146:intron 35.0%
TGTGAAGGTAAAGAAAGCTA+AGG - chr1.2:11510664-11510683 MS.gene059146:intron 35.0%
TTGAGAAGAAGATGAGGTTT+GGG + chr1.2:11510489-11510508 None:intergenic 35.0%
! CTCTCTGATTTGATTGTGTT+TGG - chr1.2:11511695-11511714 MS.gene059146:CDS 35.0%
! GTTTAAACCCCTAGCAATTT+TGG + chr1.2:11511149-11511168 None:intergenic 35.0%
! TGGTGGAAATGTCTTGTTAA+GGG - chr1.2:11512559-11512578 MS.gene059146:intron 35.0%
! TTGGGTTTCTTCTTGGTAAT+CGG + chr1.2:11510471-11510490 None:intergenic 35.0%
!! GTTTGCTATGAACATTGTGT+TGG - chr1.2:11510933-11510952 MS.gene059146:intron 35.0%
!! TTTTGGTTGAGAAGAAGATG+AGG + chr1.2:11510495-11510514 None:intergenic 35.0%
AAGGAAGATGAGAAGAAGGA+TGG - chr1.2:11510794-11510813 MS.gene059146:intron 40.0%
AATTCCAGGCTAAAGACAGA+AGG + chr1.2:11512203-11512222 None:intergenic 40.0%
AGAAAAGCGGTTGGATTTGA+AGG + chr1.2:11510554-11510573 None:intergenic 40.0%
ATCCATACCATTACCCTGAT+TGG + chr1.2:11511938-11511957 None:intergenic 40.0%
ATCCATAGTTTGGACTGACA+GGG + chr1.2:11511569-11511588 None:intergenic 40.0%
ATGCTCCAGTAACATTCATC+AGG + chr1.2:11512310-11512329 None:intergenic 40.0%
ATGGATCTGGTACCATATCT+TGG - chr1.2:11511583-11511602 MS.gene059146:CDS 40.0%
ATGGTACCAGATCCATAGTT+TGG + chr1.2:11511579-11511598 None:intergenic 40.0%
CGTCGCTTCTTGCATTTAAA+TGG + chr1.2:11511638-11511657 None:intergenic 40.0%
CTCTGATCCTCTGCAAAAAT+AGG + chr1.2:11512499-11512518 None:intergenic 40.0%
GATGAATGTTACTGGAGCAT+AGG - chr1.2:11512310-11512329 MS.gene059146:intron 40.0%
GCAACATTAAACCAACTACC+GGG + chr1.2:11512938-11512957 None:intergenic 40.0%
GGCAACATTAAACCAACTAC+CGG + chr1.2:11512939-11512958 None:intergenic 40.0%
GTTGAGAAGAAGATGAGGTT+TGG + chr1.2:11510490-11510509 None:intergenic 40.0%
TAACGCGATCTCTTGATTCA+CGG + chr1.2:11511349-11511368 None:intergenic 40.0%
TAAGATTGCTGCTGAAGAGA+AGG - chr1.2:11510706-11510725 MS.gene059146:intron 40.0%
TCAAGCCTGATGAATGTTAC+TGG - chr1.2:11512302-11512321 MS.gene059146:intron 40.0%
TCCATACCATTACCCTGATT+GGG + chr1.2:11511937-11511956 None:intergenic 40.0%
TGAGAAGGAAGATGAGAAGA+AGG - chr1.2:11510790-11510809 MS.gene059146:intron 40.0%
TGATTCACGGTCCTTATCAT+TGG + chr1.2:11511336-11511355 None:intergenic 40.0%
TGGATCTGGTACCATATCTT+GGG - chr1.2:11511584-11511603 MS.gene059146:CDS 40.0%
TGTATTCGACTTCATCGCTA+AGG - chr1.2:11510580-11510599 MS.gene059146:intron 40.0%
TTGGATTTGAGGATTTCTCC+CGG - chr1.2:11512917-11512936 MS.gene059146:CDS 40.0%
! AGAGAACGGAATAGGTTTTG+AGG + chr1.2:11510519-11510538 None:intergenic 40.0%
! AGCAGCAATCTTAGCTTTCT+CGG + chr1.2:11510699-11510718 None:intergenic 40.0%
! ATATAGATGGACTTAGGCAG+GGG + chr1.2:11511497-11511516 None:intergenic 40.0%
! ATGAGGTTTGGGTTTCTTCT+TGG + chr1.2:11510478-11510497 None:intergenic 40.0%
! CTGGTGGAAATGTCTTGTTA+AGG - chr1.2:11512558-11512577 MS.gene059146:intron 40.0%
! GATATAGATGGACTTAGGCA+GGG + chr1.2:11511498-11511517 None:intergenic 40.0%
! GATTTTGTTCCATTTGGCAC+TGG + chr1.2:11512012-11512031 None:intergenic 40.0%
! GCTCTCAGGTTCAACTTTTT+GGG + chr1.2:11512602-11512621 None:intergenic 40.0%
! TGATATAGATGGACTTAGGC+AGG + chr1.2:11511499-11511518 None:intergenic 40.0%
! TGCTCTCAGGTTCAACTTTT+TGG + chr1.2:11512603-11512622 None:intergenic 40.0%
!! ACATTTTCGAGAAAAGCGGT+TGG + chr1.2:11510563-11510582 None:intergenic 40.0%
!! GAGAACGGAATAGGTTTTGA+GGG + chr1.2:11510518-11510537 None:intergenic 40.0%
!! TCCACAATTTCTAGCTCAAC+CGG - chr1.2:11511114-11511133 MS.gene059146:CDS 40.0%
!!! GGAATAGGTTTTGAGGGTTT+TGG + chr1.2:11510512-11510531 None:intergenic 40.0%
AAGGTGGAAGAGAACGGAAT+AGG + chr1.2:11510527-11510546 None:intergenic 45.0%
ACAGTTCCCAATCAGGGTAA+TGG - chr1.2:11511928-11511947 MS.gene059146:intron 45.0%
ACCGGTTGAGCTAGAAATTG+TGG + chr1.2:11511118-11511137 None:intergenic 45.0%
AGCTATGGAGGTAGATGAGA+AGG - chr1.2:11510775-11510794 MS.gene059146:intron 45.0%
CCAAGCATGATCAAATGGAC+TGG - chr1.2:11512539-11512558 MS.gene059146:intron 45.0%
CCAGTCCATTTGATCATGCT+TGG + chr1.2:11512542-11512561 None:intergenic 45.0%
CCATATCTTGGGGGAATTCA+AGG - chr1.2:11511595-11511614 MS.gene059146:CDS 45.0%
CCTTGAATTCCCCCAAGATA+TGG + chr1.2:11511598-11511617 None:intergenic 45.0%
GAGAAGAAGGATGGAGAAAG+TGG - chr1.2:11510803-11510822 MS.gene059146:intron 45.0%
GATCAGAGGCAGAAGTCTAT+GGG - chr1.2:11512978-11512997 MS.gene059146:CDS 45.0%
GATCCATAGTTTGGACTGAC+AGG + chr1.2:11511570-11511589 None:intergenic 45.0%
GATCTGGTACCATATCTTGG+GGG - chr1.2:11511586-11511605 MS.gene059146:CDS 45.0%
GGATCTGGTACCATATCTTG+GGG - chr1.2:11511585-11511604 MS.gene059146:CDS 45.0%
GGTTGGATTTGAAGGATCGA+AGG + chr1.2:11510546-11510565 None:intergenic 45.0%
GTCAGTCCAAACTATGGATC+TGG - chr1.2:11511570-11511589 MS.gene059146:CDS 45.0%
GTGAATGTTCCAGTGCCAAA+TGG - chr1.2:11512000-11512019 MS.gene059146:intron 45.0%
TGATCAGAGGCAGAAGTCTA+TGG - chr1.2:11512977-11512996 MS.gene059146:CDS 45.0%
TGGATTTGAAGGATCGAAGG+TGG + chr1.2:11510543-11510562 None:intergenic 45.0%
! CACAAACAAGTGTCACTGGA+AGG + chr1.2:11512152-11512171 None:intergenic 45.0%
! TCAGGGTAATGGTATGGATC+TGG - chr1.2:11511939-11511958 MS.gene059146:intron 45.0%
! TCCCAATCAGGGTAATGGTA+TGG - chr1.2:11511933-11511952 MS.gene059146:intron 45.0%
! TGATGGACAGTTCCCAATCA+GGG - chr1.2:11511922-11511941 MS.gene059146:intron 45.0%
! TTGATGGACAGTTCCCAATC+AGG - chr1.2:11511921-11511940 MS.gene059146:intron 45.0%
!! AGAGAAGGCGAAGGTTGATA+AGG - chr1.2:11510721-11510740 MS.gene059146:intron 45.0%
!! AGCATGATCAAATGGACTGG+TGG - chr1.2:11512542-11512561 MS.gene059146:intron 45.0%
!!! TACTTTTTTTAAAATATATT+GGG - chr1.2:11510894-11510913 MS.gene059146:intron 5.0%
!!! TTACTTTTTTTAAAATATAT+TGG - chr1.2:11510893-11510912 MS.gene059146:intron 5.0%
AAGTGAGGAGCTCCAGAAAC+AGG - chr1.2:11513010-11513029 MS.gene059146:CDS 50.0%
CGTTCCTTCTGTCTTTAGCC+TGG - chr1.2:11512196-11512215 MS.gene059146:intron 50.0%
CTCCCTGTCAGTCCAAACTA+TGG - chr1.2:11511564-11511583 MS.gene059146:CDS 50.0%
CTTTACCTTCACAGCGCGAA+CGG + chr1.2:11510657-11510676 None:intergenic 50.0%
GAACCTGAGAGCAGCAAACT+TGG - chr1.2:11512610-11512629 MS.gene059146:intron 50.0%
GATGGAGAAAGTGGCTTAGC+AGG - chr1.2:11510812-11510831 MS.gene059146:intron 50.0%
GCATTCGAGAAGTCCATCTC+CGG + chr1.2:11513168-11513187 None:intergenic 50.0%
GGATCGAAGGTGGAAGAGAA+CGG + chr1.2:11510533-11510552 None:intergenic 50.0%
TATGGGCCTTCCAACAAGTG+AGG - chr1.2:11512995-11513014 MS.gene059146:CDS 50.0%
TCAACAGTCTGTCGAGTCTC+AGG + chr1.2:11512646-11512665 None:intergenic 50.0%
TGAGGATTTCTCCCGGTAGT+TGG - chr1.2:11512924-11512943 MS.gene059146:CDS 50.0%
TGTATTGCAGCATCCGGAGA+TGG - chr1.2:11513152-11513171 MS.gene059146:CDS 50.0%
! CAATGATTCGGCTGAGAAGG+TGG - chr1.2:11510622-11510641 MS.gene059146:CDS 50.0%
! CGACAATGATTCGGCTGAGA+AGG - chr1.2:11510619-11510638 MS.gene059146:CDS 50.0%
!! GAAGGCGAAGGTTGATAAGG+CGG - chr1.2:11510724-11510743 MS.gene059146:intron 50.0%
!! TCACCAAGTTTGCTGCTCTC+AGG + chr1.2:11512616-11512635 None:intergenic 50.0%
!! TTCTGGAGCTCCTCACTTGT+TGG + chr1.2:11513008-11513027 None:intergenic 50.0%
ACCCACACACACACGCAAGT+CGG + chr1.2:11511173-11511192 None:intergenic 55.0%
GGCGGAGAAGAAAGCTATGG+AGG - chr1.2:11510763-11510782 MS.gene059146:intron 55.0%
TCTGTCGAGTCTCAGGATCC+AGG + chr1.2:11512639-11512658 None:intergenic 55.0%
TGCGGCGGAGAAGAAAGCTA+TGG - chr1.2:11510760-11510779 MS.gene059146:intron 55.0%
TGCGTGTGTGTGTGGGTTTC+CGG - chr1.2:11511176-11511195 MS.gene059146:intron 55.0%
TGCTGCTGAAGAGAAGGCGA+AGG - chr1.2:11510712-11510731 MS.gene059146:intron 55.0%
! GAGCAGCAAACTTGGTGACC+TGG - chr1.2:11512618-11512637 MS.gene059146:intron 55.0%
! GGAGCTCCTCACTTGTTGGA+AGG + chr1.2:11513004-11513023 None:intergenic 55.0%
CCACACACACACGCAAGTCG+GGG + chr1.2:11511171-11511190 None:intergenic 60.0%
CCCACACACACACGCAAGTC+GGG + chr1.2:11511172-11511191 None:intergenic 60.0%
TACCTTCACAGCGCGAACGG+CGG + chr1.2:11510654-11510673 None:intergenic 60.0%
! CCCGACTTGCGTGTGTGTGT+GGG - chr1.2:11511169-11511188 MS.gene059146:intron 60.0%
!! GGCGAAGGTTGATAAGGCGG+CGG - chr1.2:11510727-11510746 MS.gene059146:intron 60.0%
ATCCGCCGTTCGCGCTGTGA+AGG - chr1.2:11510649-11510668 MS.gene059146:CDS 65.0%
! CCCCGACTTGCGTGTGTGTG+TGG - chr1.2:11511168-11511187 MS.gene059146:intron 65.0%
GGCGGCGGCTGCTGTTGCTG+CGG - chr1.2:11510742-11510761 MS.gene059146:intron 75.0%
GGCGGCTGCTGTTGCTGCGG+CGG - chr1.2:11510745-11510764 MS.gene059146:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11510455 11513200 11510455 ID=MS.gene059146
chr1.2 mRNA 11510455 11513200 11510455 ID=MS.gene059146.t1;Parent=MS.gene059146
chr1.2 exon 11512822 11513200 11512822 ID=MS.gene059146.t1.exon1;Parent=MS.gene059146.t1
chr1.2 CDS 11512822 11513200 11512822 ID=cds.MS.gene059146.t1;Parent=MS.gene059146.t1
chr1.2 exon 11511551 11511723 11511551 ID=MS.gene059146.t1.exon2;Parent=MS.gene059146.t1
chr1.2 CDS 11511551 11511723 11511551 ID=cds.MS.gene059146.t1;Parent=MS.gene059146.t1
chr1.2 exon 11511324 11511372 11511324 ID=MS.gene059146.t1.exon3;Parent=MS.gene059146.t1
chr1.2 CDS 11511324 11511372 11511324 ID=cds.MS.gene059146.t1;Parent=MS.gene059146.t1
chr1.2 exon 11510980 11511146 11510980 ID=MS.gene059146.t1.exon4;Parent=MS.gene059146.t1
chr1.2 CDS 11510980 11511146 11510980 ID=cds.MS.gene059146.t1;Parent=MS.gene059146.t1
chr1.2 exon 11510597 11510680 11510597 ID=MS.gene059146.t1.exon5;Parent=MS.gene059146.t1
chr1.2 CDS 11510597 11510680 11510597 ID=cds.MS.gene059146.t1;Parent=MS.gene059146.t1
chr1.2 exon 11510455 11510493 11510455 ID=MS.gene059146.t1.exon6;Parent=MS.gene059146.t1
chr1.2 CDS 11510455 11510493 11510455 ID=cds.MS.gene059146.t1;Parent=MS.gene059146.t1
Gene Sequence

>MS.gene059146

ATGGCGATTATCTCCGATTACCAAGAAGAAACCCAAACCTCATCTTCTTCTCAACCAAAACCCTCAAAACCTATTCCGTTCTCTTCCACCTTCGATCCTTCAAATCCAACCGCTTTTCTCGAAAATGTATTCGACTTCATCGCTAAGGAAAGTACCGATTTCTTCGACAATGATTCGGCTGAGAAGGTGGTTTTATCCGCCGTTCGCGCTGTGAAGGTAAAGAAAGCTAAGGCTGTTGCTGCCGAGAAAGCTAAGATTGCTGCTGAAGAGAAGGCGAAGGTTGATAAGGCGGCGGCTGCTGTTGCTGCGGCGGAGAAGAAAGCTATGGAGGTAGATGAGAAGGAAGATGAGAAGAAGGATGGAGAAAGTGGCTTAGCAGGTATTAAAAAAAAATCAATTTGATTTCATTCTATTTTTGCCCTAGTTTTTTTTATTTCTTTACTTTTTTTAAAATATATTGGGATTATTATTGAATTTTGTTTGCTATGAACATTGTGTTGGGTCTGATTGAAATTTATGAGATAACAATGGGTTATTATGATATTGATTATTGAGCTAAGAATGTTAATTGTTAATTAATGTATCATATTGTATTGCTATGGAAAATCATATAGTACAATAAATTAGCTGTTTGATGTCTAAAGTTTTGTATAATGATGTCCACAATTTCTAGCTCAACCGGTTAAATATGCCAAAATTGCTAGGGGTTTAAACCCCGACTTGCGTGTGTGTGTGGGTTTCCGGTGATTATTGTCATTTCATCTATCTAAAAAAAGAAATTTGTATGATGATAATGTGAGTTGTTATGACGTTGATTAGTGTTGATTGTTTATTAAATCTATGGCTTTTCATAGTGATAGAGAATCATAGATGATAAACCAATGATAAGGACCGTGAATCAAGAGATCGCGTTACAACATCTCTACCCAAAATTTTAAGCATTGAGTGTTTAAGCTTATTTGTAGTTATTGTGAGACTCTCATATAACTAAACTACTTGCACACCACTATGCATATACCACATTTTTTGGTAATAGAAACCCCTGCCTAAGTCCATCTATATCACAAAGACTTTCGGTACAATGATCTAGACACTTGAATCAACTTTCTCTCCCTGTCAGTCCAAACTATGGATCTGGTACCATATCTTGGGGGAATTCAAGGAGCTAAGAAAGTTGTAACCATTTAAATGCAAGAAGCGACGAGAGACTTTTTGATTAGTGTTCTATCTTTTTTCTACCCTCTCTGATTTGATTGTGTTTGGTGAAACTAGTTCTGTTTTTTATATTGTAAATTATCAAAATGATGGAATGGTAACTTTACTATGTTTATTTTATTTTTTATCGTAGTTGTATTTCATTTAACTATTCATTAGCTAATGGAATAGTAACAAATAACACTCAAAGTAACCAACTATATATCTGAATTTTTTATTTTTTAGAAAATTAGTTTACATCTTTGCTCTTTTTGATGGACAGTTCCCAATCAGGGTAATGGTATGGATCTGGAGAAATATTCTTGGACTCAAACTCTTCAAGAGCTCAATGTGAATGTTCCAGTGCCAAATGGAACAAAATCAAGGTTTGTCACATGTGAGATAAAGAAGAACCATCTAAAAGTTGGAATCAAAGGGCAGCCACCAATTATTGATGTAAGCTTTTACCAAGTTATAGCAGTTACTGTTGAAAGATATATCCTTCCAGTGACACTTGTTTGTGTTATTTTTTATTTTTATAATTGATCGTTCCTTCTGTCTTTAGCCTGGAATTTTTAGTTTGTTTGAAGTTTTTATGATACCTTTGCTGATTCATTATTTTAAAATTTCTCAGGGGGAGCTGTATAAATCTATCAAGCCTGATGAATGTTACTGGAGCATAGGTATGAAACTATTAAATTTCTTTTGTGTAAAATCCCTTTTTAAGTGACCATAATTCATTAGGATCATGATGGATTTGATATTTTTAAACTTGTGAAAATTTTGGTTGAGAGTCTTCTGATTGTAACTAGGCTTTGTTTGTGTGTTACTAATTGTTATTTTAAAACCTATTTTTGCAGAGGATCAGAGTACACTTTCTATTCTTTTAACCAAGCATGATCAAATGGACTGGTGGAAATGTCTTGTTAAGGGTGATCCTGAAATTAACACCCAAAAAGTTGAACCTGAGAGCAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAGATGATGGTAACTACTAACTAGTTGATTTTTGTTACTTCAATTACTTAATATAACTTGCATTTGGTTTTGACATGTCATCATTTTTATTTTATGAAATCCTGTTGCATTTAAGTATGTATCTATTCTTTTGTTGGGCTTATATTGTGAAAGATGACATTCTAGTTGAATGGTGCATAATCGAATAGAGATAACTTGGCTCGTTGAATTTTTCGATGAAAACAATATGATAGATTTAAATAACACTGTTTTGGATTTGAGGATTTCTCCCGGTAGTTGGTTTAATGTTGCCCTGTATTCTTTAACAGTTTGATCAGAGGCAGAAGTCTATGGGCCTTCCAACAAGTGAGGAGCTCCAGAAACAGGAAATCATGAAGAAATTTATGAGTCAGGTAAACCTTTGATTTTTGTATTGCTTCTGTCTACTTTCTCAATACTTGAATGCCTTTGTCGATCTAGTAAATTTGCTAACATTTTAAATTTTATGTATTGCAGCATCCGGAGATGGACTTCTCGAATGCAAAATTATCTTAG

Protein sequence

>MS.gene059146.t1

MAIISDYQEETQTSSSSQPKPSKPIPFSSTFDPSNPTAFLENVFDFIAKESTDFFDNDSAEKVVLSAVRAVKVKKAKAVAAEKAKIAAEEKAKVDKAAAAVAAAEKKAMEVDEKEDEKKDGESGLAVPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSRFVTCEIKKNHLKVGIKGQPPIIDGELYKSIKPDECYWSIEDQSTLSILLTKHDQMDWWKCLVKGDPEINTQKVEPESSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEIMKKFMSQHPEMDFSNAKLS