Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069579.t1 | XP_013447183.1 | 97 | 230 | 7 | 0 | 1 | 230 | 1 | 230 | 1.60E-122 | 448.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069579.t1 | Q499B3 | 33.8 | 145 | 84 | 3 | 83 | 225 | 334 | 468 | 1.6e-14 | 81.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069579.t1 | A0A072U5T9 | 97.0 | 230 | 7 | 0 | 1 | 230 | 1 | 230 | 1.1e-122 | 448.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060565 | MS.gene069579 | 0.801559 | 8.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069579.t1 | MTR_8g099380 | 96.957 | 230 | 7 | 0 | 1 | 230 | 1 | 230 | 1.68e-168 | 463 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069579.t1 | AT5G41850 | 69.507 | 223 | 63 | 3 | 7 | 228 | 2 | 220 | 2.01e-114 | 327 |
Find 62 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGATTAAACCTTTAA+TGG | 0.116000 | 4.4:-4964492 | None:intergenic |
| ATGCTTGGGCTACCCATTAA+AGG | 0.224197 | 4.4:+4964479 | MS.gene069579:CDS |
| CCATTGTTCCAGGGAATTAA+TGG | 0.232308 | 4.4:+4965309 | MS.gene069579:intron |
| TCATCATCCTTCAAGAGATT+TGG | 0.295222 | 4.4:-4965771 | None:intergenic |
| CCTTGAACCCATTGATTTGC+CGG | 0.305697 | 4.4:-4964283 | None:intergenic |
| GTGCTCCTTCCTCTTCTGAT+TGG | 0.352949 | 4.4:+4963543 | MS.gene069579:CDS |
| TTCATTTCCAAATCTCTTGA+AGG | 0.365586 | 4.4:+4965764 | MS.gene069579:CDS |
| GGGAATTAATGGTGCGGTTA+GGG | 0.366007 | 4.4:+4965320 | MS.gene069579:intron |
| ATAAAGATTAAACCTTTAAT+GGG | 0.373740 | 4.4:-4964491 | None:intergenic |
| AGGGAATTAATGGTGCGGTT+AGG | 0.374671 | 4.4:+4965319 | MS.gene069579:intron |
| TATTTCCGCTGTACTATGCT+TGG | 0.406124 | 4.4:+4964464 | MS.gene069579:CDS |
| CATACTGGCCGGCAAATCAA+TGG | 0.406546 | 4.4:+4964275 | MS.gene069579:CDS |
| CGCTTTCATCTTCTTTCGAG+TGG | 0.442942 | 4.4:-4965618 | None:intergenic |
| AATGAGCTGCATGTCATTGA+TGG | 0.457649 | 4.4:+4965644 | MS.gene069579:CDS |
| CCTCTTCTGATTGGATGCTA+AGG | 0.463132 | 4.4:+4963552 | MS.gene069579:CDS |
| GTTATCTTCGCTCACGGTGC+CGG | 0.468658 | 4.4:+4963521 | MS.gene069579:CDS |
| CCCTGGTCATCCTCTCATAC+TGG | 0.474899 | 4.4:+4964260 | MS.gene069579:CDS |
| TGACGACGTCGCTTTGCAGC+AGG | 0.475549 | 4.4:-4963443 | None:intergenic |
| ATTTCCGCTGTACTATGCTT+GGG | 0.476040 | 4.4:+4964465 | MS.gene069579:CDS |
| GACAACATCAGTAGCATGTA+AGG | 0.476523 | 4.4:-4963688 | None:intergenic |
| TCTACCTGGACAAACATTGT+AGG | 0.478984 | 4.4:-4965369 | None:intergenic |
| CCGGCAAATCAATGGGTTCA+AGG | 0.480096 | 4.4:+4964283 | MS.gene069579:CDS |
| TGTCATTTGCTAGACATGTC+TGG | 0.481670 | 4.4:+4964156 | MS.gene069579:intron |
| GCGGCGTTGATGATTCAATC+TGG | 0.483143 | 4.4:-4963478 | None:intergenic |
| TTATTGTAGAGTTGGATGTA+TGG | 0.486088 | 4.4:+4964419 | MS.gene069579:intron |
| CTTGAGCAGGGCAGCAAGGA+TGG | 0.491768 | 4.4:+4965569 | MS.gene069579:intron |
| TCCTCCTAAGGCAGAAAAGT+TGG | 0.515448 | 4.4:+4964194 | MS.gene069579:CDS |
| ATACTGGCCGGCAAATCAAT+GGG | 0.533846 | 4.4:+4964276 | MS.gene069579:CDS |
| AGTTCCTACAATGTTTGTCC+AGG | 0.535493 | 4.4:+4965365 | MS.gene069579:CDS |
| TGGATGTATGGTGGCTAGCA+TGG | 0.536453 | 4.4:+4964431 | MS.gene069579:CDS |
| TAGATGGAAGAGTATGTTGA+AGG | 0.539873 | 4.4:+4963662 | MS.gene069579:intron |
| TTTGGAAATGAAAGCGGCAA+TGG | 0.545771 | 4.4:-4965753 | None:intergenic |
| GGCCTTCACAGCAGCAACTT+CGG | 0.546141 | 4.4:-4965732 | None:intergenic |
| AAGAAGCATCTGCAAGCAAA+GGG | 0.546181 | 4.4:+4965692 | MS.gene069579:CDS |
| GCCAGTATGAGAGGATGACC+AGG | 0.560045 | 4.4:-4964261 | None:intergenic |
| ATCAGAAGAGGAAGGAGCAC+CGG | 0.562808 | 4.4:-4963540 | None:intergenic |
| GTTTCATTCAAATATTGTGA+AGG | 0.563214 | 4.4:+4964221 | MS.gene069579:CDS |
| TGCAGCAGGCAATGAATCCA+TGG | 0.567186 | 4.4:-4963429 | None:intergenic |
| GCAAGCAAAGGGTTCCACTC+AGG | 0.581589 | 4.4:+4965703 | MS.gene069579:CDS |
| CCCGTGGTTATCTTCGCTCA+CGG | 0.584576 | 4.4:+4963515 | MS.gene069579:CDS |
| TAAGAAGCATCTGCAAGCAA+AGG | 0.590904 | 4.4:+4965691 | MS.gene069579:CDS |
| GATTTGCCGGCCAGTATGAG+AGG | 0.595758 | 4.4:-4964270 | None:intergenic |
| TTGTAGAGTTGGATGTATGG+TGG | 0.595979 | 4.4:+4964422 | MS.gene069579:intron |
| TCTTACCAACCTTAAAAGAG+TGG | 0.598472 | 4.4:-4965673 | None:intergenic |
| AAGAGATTTGGAAATGAAAG+CGG | 0.606643 | 4.4:-4965759 | None:intergenic |
| GTGGTCTCTAACTTCTCAAG+TGG | 0.615459 | 4.4:-4965599 | None:intergenic |
| AGCCGAAGTTGCTGCTGTGA+AGG | 0.616142 | 4.4:+4965730 | MS.gene069579:CDS |
| GGTCATCCTCTCATACTGGC+CGG | 0.628032 | 4.4:+4964264 | MS.gene069579:CDS |
| CCTTAGCATCCAATCAGAAG+AGG | 0.629184 | 4.4:-4963552 | None:intergenic |
| CCGTGAGCGAAGATAACCAC+GGG | 0.638368 | 4.4:-4963515 | None:intergenic |
| AGCATCCAATCAGAAGAGGA+AGG | 0.643596 | 4.4:-4963548 | None:intergenic |
| GTGTCTTGAGCAGGGCAGCA+AGG | 0.654400 | 4.4:+4965565 | MS.gene069579:intron |
| CATTTGCTAGACATGTCTGG+TGG | 0.657074 | 4.4:+4964159 | MS.gene069579:intron |
| GAAACTGCAACTAAGTACCC+TGG | 0.679491 | 4.4:+4964243 | MS.gene069579:CDS |
| ATTTGCTAGACATGTCTGGT+GGG | 0.692456 | 4.4:+4964160 | MS.gene069579:intron |
| GAGCTGCATGTCATTGATGG+TGG | 0.695412 | 4.4:+4965647 | MS.gene069579:CDS |
| GCTAAAACAACTGTCACCCG+TGG | 0.696775 | 4.4:+4963499 | MS.gene069579:CDS |
| GTTCCAGGGAATTAATGGTG+CGG | 0.699484 | 4.4:+4965314 | MS.gene069579:intron |
| AACTTCGGCTTCATCCTGAG+TGG | 0.718969 | 4.4:-4965717 | None:intergenic |
| CCAGTATGAGAGGATGACCA+GGG | 0.730362 | 4.4:-4964260 | None:intergenic |
| ACCGTGAGCGAAGATAACCA+CGG | 0.770959 | 4.4:-4963516 | None:intergenic |
| GTAGCCCAAGCATAGTACAG+CGG | 0.776936 | 4.4:-4964469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAACGAACTTATA+AGG | - | chr4.4:4964004-4964023 | None:intergenic | 15.0% |
| !! | AAACTTTAATTATCAACAAA+GGG | - | chr4.4:4964909-4964928 | None:intergenic | 15.0% |
| !! | AAATGAATGAATAAAGAAAA+TGG | - | chr4.4:4963580-4963599 | None:intergenic | 15.0% |
| !! | ATAAAGATTAAACCTTTAAT+GGG | - | chr4.4:4964494-4964513 | None:intergenic | 15.0% |
| !! | TAAACTTTAATTATCAACAA+AGG | - | chr4.4:4964910-4964929 | None:intergenic | 15.0% |
| !! | TGTTGAATCTTATTATAATT+AGG | + | chr4.4:4963623-4963642 | MS.gene069579:intron | 15.0% |
| !!! | CGTTATTTTTTTTTTTATCT+AGG | + | chr4.4:4964012-4964031 | MS.gene069579:intron | 15.0% |
| !!! | TATTTTTTGAAGTTTTAATC+TGG | + | chr4.4:4964326-4964345 | MS.gene069579:intron | 15.0% |
| !! | ATAAGTTAAATGAAATGGAT+TGG | - | chr4.4:4963747-4963766 | None:intergenic | 20.0% |
| !! | CATAAAGATTAAACCTTTAA+TGG | - | chr4.4:4964495-4964514 | None:intergenic | 20.0% |
| !! | GAATGATAAGTTAAATGAAA+TGG | - | chr4.4:4963752-4963771 | None:intergenic | 20.0% |
| !! | TTTCTATAGCATTTATTCAT+AGG | + | chr4.4:4964970-4964989 | MS.gene069579:intron | 20.0% |
| !!! | ATTTTCAACAAAATCACAAA+TGG | - | chr4.4:4964650-4964669 | None:intergenic | 20.0% |
| !!! | CATTTATTTTATTGTAGAGT+TGG | + | chr4.4:4964411-4964430 | MS.gene069579:intron | 20.0% |
| !!! | TTTTCAACAAAATCACAAAT+GGG | - | chr4.4:4964649-4964668 | None:intergenic | 20.0% |
| ! | AAACAAATGCAGTAATCTAA+AGG | - | chr4.4:4964095-4964114 | None:intergenic | 25.0% |
| ! | AAGATATCATAGAGATCTTA+TGG | - | chr4.4:4963860-4963879 | None:intergenic | 25.0% |
| ! | GTTTCATTCAAATATTGTGA+AGG | + | chr4.4:4964221-4964240 | MS.gene069579:CDS | 25.0% |
| ! | TTTCAACAAAATCACAAATG+GGG | - | chr4.4:4964648-4964667 | None:intergenic | 25.0% |
| !! | GTAATGCACAGATAAATTTT+TGG | + | chr4.4:4965520-4965539 | MS.gene069579:intron | 25.0% |
| !! | TGCTAGCAATAGTTTTTATT+AGG | - | chr4.4:4964376-4964395 | None:intergenic | 25.0% |
| !!! | TTAAATGAAATGGATTGGAT+TGG | - | chr4.4:4963742-4963761 | None:intergenic | 25.0% |
| AAGAGATTTGGAAATGAAAG+CGG | - | chr4.4:4965762-4965781 | None:intergenic | 30.0% | |
| ATTACAGAATGTCATACTGA+TGG | - | chr4.4:4965505-4965524 | None:intergenic | 30.0% | |
| ATTGATGAAGTTGTCATTCT+TGG | + | chr4.4:4965034-4965053 | MS.gene069579:intron | 30.0% | |
| ATTTCCACATATCACATTCT+AGG | - | chr4.4:4964805-4964824 | None:intergenic | 30.0% | |
| CAAATTCATTAGATTCGCTT+CGG | - | chr4.4:4964138-4964157 | None:intergenic | 30.0% | |
| CATTTATTCATAGGTGAGTT+TGG | + | chr4.4:4964979-4964998 | MS.gene069579:intron | 30.0% | |
| GAAACTGTCATTACTACATA+TGG | + | chr4.4:4965242-4965261 | MS.gene069579:intron | 30.0% | |
| TGGACATATATATTTGCATG+AGG | + | chr4.4:4964346-4964365 | MS.gene069579:intron | 30.0% | |
| TTATTGTAGAGTTGGATGTA+TGG | + | chr4.4:4964419-4964438 | MS.gene069579:intron | 30.0% | |
| TTCATTTCCAAATCTCTTGA+AGG | + | chr4.4:4965764-4965783 | MS.gene069579:CDS | 30.0% | |
| TTTCCACATATCACATTCTA+GGG | - | chr4.4:4964804-4964823 | None:intergenic | 30.0% | |
| ! | CTTCTATTTCTTCAAACTGT+TGG | + | chr4.4:4964720-4964739 | MS.gene069579:intron | 30.0% |
| ! | GTTTTCTGTTCAGAAATTGT+TGG | + | chr4.4:4965157-4965176 | MS.gene069579:intron | 30.0% |
| ! | TATTTTCTCCATGTGATAGA+TGG | + | chr4.4:4963646-4963665 | MS.gene069579:intron | 30.0% |
| ! | TCTAATTTGTCATTGCAGTA+TGG | + | chr4.4:4965402-4965421 | MS.gene069579:intron | 30.0% |
| ! | TTCATACACTGTTAGTCTAT+TGG | + | chr4.4:4965453-4965472 | MS.gene069579:intron | 30.0% |
| ! | TTTTCCTCTTCATTTCTTCA+TGG | + | chr4.4:4965101-4965120 | MS.gene069579:intron | 30.0% |
| !! | TGAAGAAATAGAAGTACTGA+GGG | - | chr4.4:4964714-4964733 | None:intergenic | 30.0% |
| !! | TTAGTTTTCTTAGGGTGTTT+TGG | + | chr4.4:4965212-4965231 | MS.gene069579:intron | 30.0% |
| !! | TTGAAGAAATAGAAGTACTG+AGG | - | chr4.4:4964715-4964734 | None:intergenic | 30.0% |
| !!! | TTGGTGCATTAGTTTTCTTA+GGG | + | chr4.4:4965204-4965223 | MS.gene069579:intron | 30.0% |
| ACAAAATCACAAATGGGGTA+AGG | - | chr4.4:4964643-4964662 | None:intergenic | 35.0% | |
| ACTAACAGTGTATGAAACTG+AGG | - | chr4.4:4965449-4965468 | None:intergenic | 35.0% | |
| AGAGCTCTCAAATATGTACT+AGG | + | chr4.4:4965066-4965085 | MS.gene069579:intron | 35.0% | |
| ATACTCTTCCATCTATCACA+TGG | - | chr4.4:4963657-4963676 | None:intergenic | 35.0% | |
| ATGATCTGTAGTTCAGTGAA+CGG | + | chr4.4:4964061-4964080 | MS.gene069579:intron | 35.0% | |
| ATTCGACATCCACTTTAGTT+TGG | + | chr4.4:4964668-4964687 | MS.gene069579:intron | 35.0% | |
| ATTTCTTCAAACTGTTGGAC+CGG | + | chr4.4:4964725-4964744 | MS.gene069579:intron | 35.0% | |
| GATTGGAAAGAAACTCACAA+GGG | - | chr4.4:4963725-4963744 | None:intergenic | 35.0% | |
| GGAAATTGAAAACACATCCA+TGG | - | chr4.4:4965484-4965503 | None:intergenic | 35.0% | |
| TAGAAAAAGAGAACTCTACC+TGG | - | chr4.4:4965386-4965405 | None:intergenic | 35.0% | |
| TCTTACCAACCTTAAAAGAG+TGG | - | chr4.4:4965676-4965695 | None:intergenic | 35.0% | |
| TTAGTCTATTGGATGAACCA+TGG | + | chr4.4:4965464-4965483 | MS.gene069579:intron | 35.0% | |
| TTCCACATATCACATTCTAG+GGG | - | chr4.4:4964803-4964822 | None:intergenic | 35.0% | |
| ! | AATTTTGTTGCCATTGTTCC+AGG | + | chr4.4:4965299-4965318 | MS.gene069579:intron | 35.0% |
| ! | ATTTTGTTGCCATTGTTCCA+GGG | + | chr4.4:4965300-4965319 | MS.gene069579:intron | 35.0% |
| ! | TAGATGGAAGAGTATGTTGA+AGG | + | chr4.4:4963662-4963681 | MS.gene069579:intron | 35.0% |
| ! | TTCGACATCCACTTTAGTTT+GGG | + | chr4.4:4964669-4964688 | MS.gene069579:intron | 35.0% |
| !! | AAACTAAGATGACTGGCTTA+AGG | - | chr4.4:4965005-4965024 | None:intergenic | 35.0% |
| !!! | GTTGGTGCATTAGTTTTCTT+AGG | + | chr4.4:4965203-4965222 | MS.gene069579:intron | 35.0% |
| AATGAGCTGCATGTCATTGA+TGG | + | chr4.4:4965644-4965663 | MS.gene069579:CDS | 40.0% | |
| ACACACACAAGACTAGCATT+AGG | - | chr4.4:4965549-4965568 | None:intergenic | 40.0% | |
| AGTTCCTACAATGTTTGTCC+AGG | + | chr4.4:4965365-4965384 | MS.gene069579:CDS | 40.0% | |
| AGTTGGCAAACTAAGATGAC+TGG | - | chr4.4:4965012-4965031 | None:intergenic | 40.0% | |
| ATCAAGGATGGTTTCATAGC+CGG | - | chr4.4:4964747-4964766 | None:intergenic | 40.0% | |
| ATGCCACACTCAAGCAATTA+TGG | + | chr4.4:4965181-4965200 | MS.gene069579:intron | 40.0% | |
| ATTTCCGCTGTACTATGCTT+GGG | + | chr4.4:4964465-4964484 | MS.gene069579:CDS | 40.0% | |
| CAACCATAATTGCTTGAGTG+TGG | - | chr4.4:4965187-4965206 | None:intergenic | 40.0% | |
| CAAGCCATGAAGAAATGAAG+AGG | - | chr4.4:4965108-4965127 | None:intergenic | 40.0% | |
| CACACTCAAGCAATTATGGT+TGG | + | chr4.4:4965185-4965204 | MS.gene069579:intron | 40.0% | |
| CCATTAATTCCCTGGAACAA+TGG | - | chr4.4:4965312-4965331 | None:intergenic | 40.0% | |
| CCATTGTTCCAGGGAATTAA+TGG | + | chr4.4:4965309-4965328 | MS.gene069579:intron | 40.0% | |
| GACAACATCAGTAGCATGTA+AGG | - | chr4.4:4963691-4963710 | None:intergenic | 40.0% | |
| GACAACTTCATCAATCGAGT+TGG | - | chr4.4:4965029-4965048 | None:intergenic | 40.0% | |
| GCACTATCATTTGCACTTGT+TGG | + | chr4.4:4965127-4965146 | MS.gene069579:intron | 40.0% | |
| GCTAAGCTGAAAATCAAGGA+TGG | - | chr4.4:4964759-4964778 | None:intergenic | 40.0% | |
| GGATTGGAAAGAAACTCACA+AGG | - | chr4.4:4963726-4963745 | None:intergenic | 40.0% | |
| GTGTTGAAATCCAATGAGTG+TGG | - | chr4.4:4964877-4964896 | None:intergenic | 40.0% | |
| TATTTCCGCTGTACTATGCT+TGG | + | chr4.4:4964464-4964483 | MS.gene069579:CDS | 40.0% | |
| TCCAAAGACCCAAACTAAAG+TGG | - | chr4.4:4964680-4964699 | None:intergenic | 40.0% | |
| TCTACCTGGACAAACATTGT+AGG | - | chr4.4:4965372-4965391 | None:intergenic | 40.0% | |
| TGCAGCTAAGCTGAAAATCA+AGG | - | chr4.4:4964763-4964782 | None:intergenic | 40.0% | |
| TTGTAGAGTTGGATGTATGG+TGG | + | chr4.4:4964422-4964441 | MS.gene069579:intron | 40.0% | |
| TTTGGAAATGAAAGCGGCAA+TGG | - | chr4.4:4965756-4965775 | None:intergenic | 40.0% | |
| ! | ATTTGCTAGACATGTCTGGT+GGG | + | chr4.4:4964160-4964179 | MS.gene069579:intron | 40.0% |
| ! | TGTCATTTGCTAGACATGTC+TGG | + | chr4.4:4964156-4964175 | MS.gene069579:intron | 40.0% |
| ! | TTTCTGCCCCTTTTACTTTG+TGG | + | chr4.4:4964565-4964584 | MS.gene069579:intron | 40.0% |
| !! | AAGAAGCATCTGCAAGCAAA+GGG | + | chr4.4:4965692-4965711 | MS.gene069579:CDS | 40.0% |
| !! | AGAAATAGAAGTACTGAGGG+TGG | - | chr4.4:4964711-4964730 | None:intergenic | 40.0% |
| !! | CGAACTTATAAGGCACTGTT+TGG | - | chr4.4:4963994-4964013 | None:intergenic | 40.0% |
| !! | TAAGAAGCATCTGCAAGCAA+AGG | + | chr4.4:4965691-4965710 | MS.gene069579:CDS | 40.0% |
| !! | TCCACTTTAGTTTGGGTCTT+TGG | + | chr4.4:4964676-4964695 | MS.gene069579:intron | 40.0% |
| ACATGTCTGGTGGGAAAAAG+AGG | + | chr4.4:4964169-4964188 | MS.gene069579:CDS | 45.0% | |
| AGCATCCAATCAGAAGAGGA+AGG | - | chr4.4:4963551-4963570 | None:intergenic | 45.0% | |
| AGGGAATTAATGGTGCGGTT+AGG | + | chr4.4:4965319-4965338 | MS.gene069579:intron | 45.0% | |
| ATACTGGCCGGCAAATCAAT+GGG | + | chr4.4:4964276-4964295 | MS.gene069579:CDS | 45.0% | |
| ATCGCCGCCACAAAGTAAAA+GGG | - | chr4.4:4964575-4964594 | None:intergenic | 45.0% | |
| ATGCTTGGGCTACCCATTAA+AGG | + | chr4.4:4964479-4964498 | MS.gene069579:CDS | 45.0% | |
| CACAAATGGGGTAAGGCATA+TGG | - | chr4.4:4964636-4964655 | None:intergenic | 45.0% | |
| CATGTCTGGTGGGAAAAAGA+GGG | + | chr4.4:4964170-4964189 | MS.gene069579:CDS | 45.0% | |
| CCTCTTCTGATTGGATGCTA+AGG | + | chr4.4:4963552-4963571 | MS.gene069579:CDS | 45.0% | |
| CCTTAGCATCCAATCAGAAG+AGG | - | chr4.4:4963555-4963574 | None:intergenic | 45.0% | |
| CGCTTTCATCTTCTTTCGAG+TGG | - | chr4.4:4965621-4965640 | None:intergenic | 45.0% | |
| CTCCCCTAGAATGTGATATG+TGG | + | chr4.4:4964798-4964817 | MS.gene069579:intron | 45.0% | |
| GAAACTGCAACTAAGTACCC+TGG | + | chr4.4:4964243-4964262 | MS.gene069579:CDS | 45.0% | |
| GGGAATTAATGGTGCGGTTA+GGG | + | chr4.4:4965320-4965339 | MS.gene069579:intron | 45.0% | |
| GTGGTCTCTAACTTCTCAAG+TGG | - | chr4.4:4965602-4965621 | None:intergenic | 45.0% | |
| GTTCCAGGGAATTAATGGTG+CGG | + | chr4.4:4965314-4965333 | MS.gene069579:intron | 45.0% | |
| TAACCGCACCATTAATTCCC+TGG | - | chr4.4:4965320-4965339 | None:intergenic | 45.0% | |
| TATCGCCGCCACAAAGTAAA+AGG | - | chr4.4:4964576-4964595 | None:intergenic | 45.0% | |
| TCCTCCTAAGGCAGAAAAGT+TGG | + | chr4.4:4964194-4964213 | MS.gene069579:CDS | 45.0% | |
| TCTTGTGTGTGTCTTGAGCA+GGG | + | chr4.4:4965557-4965576 | MS.gene069579:intron | 45.0% | |
| TTGCTAAGCTTGTACGTGAG+AGG | - | chr4.4:4964839-4964858 | None:intergenic | 45.0% | |
| ! | ACCAACTTTTCTGCCTTAGG+AGG | - | chr4.4:4964198-4964217 | None:intergenic | 45.0% |
| ! | CATTTGCTAGACATGTCTGG+TGG | + | chr4.4:4964159-4964178 | MS.gene069579:intron | 45.0% |
| ! | TCGACCAACTTTTCTGCCTT+AGG | - | chr4.4:4964201-4964220 | None:intergenic | 45.0% |
| !! | CCTTGAACCCATTGATTTGC+CGG | - | chr4.4:4964286-4964305 | None:intergenic | 45.0% |
| !! | TGGTGGTGACCACTCTTTTA+AGG | + | chr4.4:4965664-4965683 | MS.gene069579:CDS | 45.0% |
| !!! | ACGGGTGACAGTTGTTTTAG+CGG | - | chr4.4:4963500-4963519 | None:intergenic | 45.0% |
| !!! | GGTGACCACTCTTTTAAGGT+TGG | + | chr4.4:4965668-4965687 | MS.gene069579:CDS | 45.0% |
| AACTTCGGCTTCATCCTGAG+TGG | - | chr4.4:4965720-4965739 | None:intergenic | 50.0% | |
| ACCGTGAGCGAAGATAACCA+CGG | - | chr4.4:4963519-4963538 | None:intergenic | 50.0% | |
| CATACTGGCCGGCAAATCAA+TGG | + | chr4.4:4964275-4964294 | MS.gene069579:CDS | 50.0% | |
| CCAGTATGAGAGGATGACCA+GGG | - | chr4.4:4964263-4964282 | None:intergenic | 50.0% | |
| GAAAAAGAGGGCTCCTCCTA+AGG | + | chr4.4:4964182-4964201 | MS.gene069579:CDS | 50.0% | |
| GAGCTGCATGTCATTGATGG+TGG | + | chr4.4:4965647-4965666 | MS.gene069579:CDS | 50.0% | |
| GCTAAAACAACTGTCACCCG+TGG | + | chr4.4:4963499-4963518 | MS.gene069579:CDS | 50.0% | |
| GTAGCCCAAGCATAGTACAG+CGG | - | chr4.4:4964472-4964491 | None:intergenic | 50.0% | |
| GTCTTGTGTGTGTCTTGAGC+AGG | + | chr4.4:4965556-4965575 | MS.gene069579:intron | 50.0% | |
| GTGCTCCTTCCTCTTCTGAT+TGG | + | chr4.4:4963543-4963562 | MS.gene069579:CDS | 50.0% | |
| TCCAATGAGTGTGGCTCAGT+TGG | - | chr4.4:4964868-4964887 | None:intergenic | 50.0% | |
| TCGCCGCCACAAAGTAAAAG+GGG | - | chr4.4:4964574-4964593 | None:intergenic | 50.0% | |
| TGGATGTATGGTGGCTAGCA+TGG | + | chr4.4:4964431-4964450 | MS.gene069579:CDS | 50.0% | |
| ! | ATCAGAAGAGGAAGGAGCAC+CGG | - | chr4.4:4963543-4963562 | None:intergenic | 50.0% |
| ! | CCGGCAAATCAATGGGTTCA+AGG | + | chr4.4:4964283-4964302 | MS.gene069579:CDS | 50.0% |
| ! | CTGCCCCTTTTACTTTGTGG+CGG | + | chr4.4:4964568-4964587 | MS.gene069579:intron | 50.0% |
| !! | GCGGCGTTGATGATTCAATC+TGG | - | chr4.4:4963481-4963500 | None:intergenic | 50.0% |
| AGCCGAAGTTGCTGCTGTGA+AGG | + | chr4.4:4965730-4965749 | MS.gene069579:CDS | 55.0% | |
| CCCGTGGTTATCTTCGCTCA+CGG | + | chr4.4:4963515-4963534 | MS.gene069579:CDS | 55.0% | |
| CCCTGGTCATCCTCTCATAC+TGG | + | chr4.4:4964260-4964279 | MS.gene069579:CDS | 55.0% | |
| CCGTGAGCGAAGATAACCAC+GGG | - | chr4.4:4963518-4963537 | None:intergenic | 55.0% | |
| GATTTGCCGGCCAGTATGAG+AGG | - | chr4.4:4964273-4964292 | None:intergenic | 55.0% | |
| GCAAGCAAAGGGTTCCACTC+AGG | + | chr4.4:4965703-4965722 | MS.gene069579:CDS | 55.0% | |
| GCCAACTGAGCCACACTCAT+TGG | + | chr4.4:4964864-4964883 | MS.gene069579:intron | 55.0% | |
| GCCAGTATGAGAGGATGACC+AGG | - | chr4.4:4964264-4964283 | None:intergenic | 55.0% | |
| GGCCTTCACAGCAGCAACTT+CGG | - | chr4.4:4965735-4965754 | None:intergenic | 55.0% | |
| GGTCATCCTCTCATACTGGC+CGG | + | chr4.4:4964264-4964283 | MS.gene069579:CDS | 55.0% | |
| GTTATCTTCGCTCACGGTGC+CGG | + | chr4.4:4963521-4963540 | MS.gene069579:CDS | 55.0% | |
| !! | AAGTACTGAGGGTGGCACTG+AGG | - | chr4.4:4964703-4964722 | None:intergenic | 55.0% |
| CTTGAGCAGGGCAGCAAGGA+TGG | + | chr4.4:4965569-4965588 | MS.gene069579:intron | 60.0% | |
| GTGTCTTGAGCAGGGCAGCA+AGG | + | chr4.4:4965565-4965584 | MS.gene069579:intron | 60.0% | |
| ! | TGACGACGTCGCTTTGCAGC+AGG | - | chr4.4:4963446-4963465 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4963431 | 4965790 | 4963431 | ID=MS.gene069579 |
| chr4.4 | mRNA | 4963431 | 4965790 | 4963431 | ID=MS.gene069579.t1;Parent=MS.gene069579 |
| chr4.4 | exon | 4963431 | 4963573 | 4963431 | ID=MS.gene069579.t1.exon1;Parent=MS.gene069579.t1 |
| chr4.4 | CDS | 4963431 | 4963573 | 4963431 | ID=cds.MS.gene069579.t1;Parent=MS.gene069579.t1 |
| chr4.4 | exon | 4963665 | 4963726 | 4963665 | ID=MS.gene069579.t1.exon2;Parent=MS.gene069579.t1 |
| chr4.4 | CDS | 4963665 | 4963726 | 4963665 | ID=cds.MS.gene069579.t1;Parent=MS.gene069579.t1 |
| chr4.4 | exon | 4964169 | 4964304 | 4964169 | ID=MS.gene069579.t1.exon3;Parent=MS.gene069579.t1 |
| chr4.4 | CDS | 4964169 | 4964304 | 4964169 | ID=cds.MS.gene069579.t1;Parent=MS.gene069579.t1 |
| chr4.4 | exon | 4964428 | 4964500 | 4964428 | ID=MS.gene069579.t1.exon4;Parent=MS.gene069579.t1 |
| chr4.4 | CDS | 4964428 | 4964500 | 4964428 | ID=cds.MS.gene069579.t1;Parent=MS.gene069579.t1 |
| chr4.4 | exon | 4965321 | 4965386 | 4965321 | ID=MS.gene069579.t1.exon5;Parent=MS.gene069579.t1 |
| chr4.4 | CDS | 4965321 | 4965386 | 4965321 | ID=cds.MS.gene069579.t1;Parent=MS.gene069579.t1 |
| chr4.4 | exon | 4965578 | 4965790 | 4965578 | ID=MS.gene069579.t1.exon6;Parent=MS.gene069579.t1 |
| chr4.4 | CDS | 4965578 | 4965790 | 4965578 | ID=cds.MS.gene069579.t1;Parent=MS.gene069579.t1 |
| Gene Sequence |
| Protein sequence |
