Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069596.t1 | XP_013447210.1 | 98.8 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 6.30E-200 | 706.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069596.t1 | Q680C0 | 62.6 | 353 | 119 | 5 | 1 | 344 | 2 | 350 | 5.2e-126 | 452.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069596.t1 | A0A072TUX4 | 98.8 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 4.5e-200 | 706.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050009 | MS.gene069596 | 0.810613 | 1.06E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene069596 | 0.874688 | 5.55E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069596.t1 | MTR_8g099555 | 98.837 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 0.0 | 709 |
| MS.gene069596.t1 | MTR_5g028370 | 67.147 | 347 | 108 | 2 | 1 | 344 | 1 | 344 | 1.26e-170 | 478 |
| MS.gene069596.t1 | MTR_5g028370 | 67.147 | 347 | 108 | 2 | 1 | 344 | 13 | 356 | 1.42e-170 | 478 |
| MS.gene069596.t1 | MTR_5g009140 | 64.451 | 346 | 101 | 5 | 1 | 343 | 1 | 327 | 3.45e-158 | 446 |
| MS.gene069596.t1 | MTR_5g009140 | 69.960 | 253 | 72 | 2 | 93 | 343 | 21 | 271 | 3.59e-130 | 373 |
| MS.gene069596.t1 | MTR_3g046880 | 32.507 | 363 | 203 | 8 | 7 | 344 | 40 | 385 | 2.01e-57 | 191 |
| MS.gene069596.t1 | MTR_5g091200 | 31.978 | 369 | 195 | 9 | 6 | 344 | 15 | 357 | 4.33e-56 | 187 |
| MS.gene069596.t1 | MTR_5g091240 | 29.326 | 341 | 196 | 6 | 21 | 339 | 35 | 352 | 2.68e-37 | 142 |
| MS.gene069596.t1 | MTR_5g091230 | 29.352 | 293 | 167 | 7 | 64 | 339 | 12 | 281 | 1.11e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069596.t1 | AT4G10955 | 62.606 | 353 | 119 | 5 | 1 | 344 | 2 | 350 | 1.10e-159 | 451 |
| MS.gene069596.t1 | AT4G10955 | 62.606 | 353 | 119 | 5 | 1 | 344 | 2 | 350 | 1.10e-159 | 451 |
| MS.gene069596.t1 | AT2G05260 | 58.056 | 360 | 133 | 4 | 1 | 344 | 1 | 358 | 3.40e-146 | 417 |
| MS.gene069596.t1 | AT5G24230 | 52.408 | 353 | 158 | 3 | 1 | 343 | 15 | 367 | 4.67e-126 | 366 |
| MS.gene069596.t1 | AT5G24230 | 52.408 | 353 | 158 | 3 | 1 | 343 | 15 | 367 | 4.67e-126 | 366 |
| MS.gene069596.t1 | AT5G24230 | 52.408 | 353 | 158 | 3 | 1 | 343 | 15 | 367 | 4.67e-126 | 366 |
| MS.gene069596.t1 | AT2G05260 | 60.000 | 285 | 103 | 2 | 1 | 276 | 1 | 283 | 1.25e-118 | 344 |
| MS.gene069596.t1 | AT5G24180 | 47.953 | 342 | 165 | 5 | 2 | 336 | 17 | 352 | 6.86e-105 | 312 |
| MS.gene069596.t1 | AT5G24220 | 45.401 | 337 | 172 | 6 | 3 | 333 | 20 | 350 | 8.00e-100 | 300 |
| MS.gene069596.t1 | AT5G24200 | 43.228 | 347 | 172 | 6 | 1 | 334 | 1 | 335 | 3.30e-84 | 258 |
| MS.gene069596.t1 | AT5G24200 | 43.228 | 347 | 172 | 6 | 1 | 334 | 1 | 335 | 3.30e-84 | 258 |
| MS.gene069596.t1 | AT5G24200 | 43.228 | 347 | 172 | 6 | 1 | 334 | 1 | 335 | 3.30e-84 | 258 |
| MS.gene069596.t1 | AT5G24210 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 6.42e-67 | 214 |
| MS.gene069596.t1 | AT5G24210 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 6.42e-67 | 214 |
| MS.gene069596.t1 | AT5G24210 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 6.42e-67 | 214 |
| MS.gene069596.t1 | AT5G50890 | 29.737 | 380 | 196 | 11 | 7 | 344 | 45 | 395 | 3.38e-51 | 175 |
| MS.gene069596.t1 | AT5G24190 | 40.084 | 237 | 119 | 5 | 120 | 339 | 3 | 233 | 1.03e-49 | 167 |
Find 89 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATAAAATTGCCATTCT+TGG | 0.149620 | 4.4:+4767700 | None:intergenic |
| GAAGACCTTGTCGGATAAAA+TGG | 0.245157 | 4.4:+4767855 | None:intergenic |
| CACGCAGACAAAGCGGTAAA+TGG | 0.291245 | 4.4:+4767521 | None:intergenic |
| GATGTTGATTCTTCAATCTT+TGG | 0.297635 | 4.4:-4768010 | MS.gene069596:CDS |
| GCCTATTGATGGGTGCGTTT+GGG | 0.317566 | 4.4:-4767364 | MS.gene069596:CDS |
| GGCCTATTGATGGGTGCGTT+TGG | 0.329441 | 4.4:-4767365 | MS.gene069596:CDS |
| TCAGCAATGGCGTTGCTTAC+CGG | 0.343704 | 4.4:-4767734 | MS.gene069596:CDS |
| GCAACCGACATTCGATGATA+TGG | 0.350071 | 4.4:+4768160 | None:intergenic |
| TGCTCCACTTGAGAAGATTA+AGG | 0.353443 | 4.4:-4767648 | MS.gene069596:CDS |
| GTGGACGAAGTAGCTGAAAA+TGG | 0.354438 | 4.4:+4768041 | None:intergenic |
| GATTCAAATGTTTGGTTAGC+TGG | 0.363493 | 4.4:-4767770 | MS.gene069596:CDS |
| CATATATGTTCAGAGTATAT+TGG | 0.378678 | 4.4:-4767467 | MS.gene069596:CDS |
| AATGTCGGTTGCTGCTTGTT+TGG | 0.384074 | 4.4:-4768149 | MS.gene069596:CDS |
| CAATATACTCTGAACATATA+TGG | 0.388402 | 4.4:+4767468 | None:intergenic |
| CAAATCCTTTGGCTGCTGCT+TGG | 0.403289 | 4.4:+4767553 | None:intergenic |
| CAGATGCTCTCGCGCCACCT+TGG | 0.409462 | 4.4:-4768075 | MS.gene069596:CDS |
| CAGCAATGGCGTTGCTTACC+GGG | 0.409487 | 4.4:-4767733 | MS.gene069596:CDS |
| CCGTAGGTGATTCAAATGTT+TGG | 0.418741 | 4.4:-4767778 | MS.gene069596:CDS |
| ATGCTCTCGCGCCACCTTGG+TGG | 0.428156 | 4.4:-4768072 | MS.gene069596:CDS |
| CTCACTTGGTGGCCTATTGA+TGG | 0.435218 | 4.4:-4767375 | MS.gene069596:CDS |
| CTGCTTGGCTTTCATAGCTA+AGG | 0.439296 | 4.4:+4767568 | None:intergenic |
| GGATCAATGATCAAATCCTT+TGG | 0.440563 | 4.4:+4767542 | None:intergenic |
| ACGCGAAACTGAGTGTGCTT+TGG | 0.446648 | 4.4:+4767895 | None:intergenic |
| CGTTATGTGATTGCCTTTCG+AGG | 0.456609 | 4.4:-4767926 | MS.gene069596:CDS |
| TGGTTAGCTGGACACTCCCT+AGG | 0.462096 | 4.4:-4767758 | MS.gene069596:CDS |
| TCCCAAACGCACCCATCAAT+AGG | 0.464827 | 4.4:+4767363 | None:intergenic |
| AAGGTGTTTACATTCTAGAA+AGG | 0.471907 | 4.4:-4768123 | MS.gene069596:CDS |
| AATTGTAGAGCTTGTATTCG+AGG | 0.472190 | 4.4:+4767225 | None:intergenic |
| TTGTATTCGAGGCGCAAGTC+GGG | 0.477930 | 4.4:+4767236 | None:intergenic |
| TCAAGTGGAGCAGATACAAA+TGG | 0.493988 | 4.4:+4767659 | None:intergenic |
| AAGTTTGATGAAGACCTTGT+CGG | 0.506452 | 4.4:+4767846 | None:intergenic |
| GTATCATTACATTGTGATGA+TGG | 0.508058 | 4.4:+4767965 | None:intergenic |
| GCAACGCCATTGCTGATCCT+AGG | 0.511330 | 4.4:+4767741 | None:intergenic |
| AACAGCTTGAATAGCTATGT+TGG | 0.513106 | 4.4:+4767817 | None:intergenic |
| AGGTGTTTACATTCTAGAAA+GGG | 0.514102 | 4.4:-4768122 | MS.gene069596:CDS |
| ATTTACCGCTTTGTCTGCGT+GGG | 0.514949 | 4.4:-4767519 | MS.gene069596:CDS |
| CATTTACCGCTTTGTCTGCG+TGG | 0.516796 | 4.4:-4767520 | MS.gene069596:CDS |
| CTTGTATTCGAGGCGCAAGT+CGG | 0.518354 | 4.4:+4767235 | None:intergenic |
| GTTGCTGCTTGTTTGGTCCA+AGG | 0.521199 | 4.4:-4768142 | MS.gene069596:CDS |
| GGGAAAACCATGGCCAAGAA+TGG | 0.525436 | 4.4:-4767713 | MS.gene069596:CDS |
| AAAATTGCCATTCTTGGCCA+TGG | 0.526431 | 4.4:+4767706 | None:intergenic |
| GCTGGCAGCGTGATAACAGC+TGG | 0.531939 | 4.4:-4767596 | MS.gene069596:CDS |
| TTTACATTCTAGAAAGGGAC+CGG | 0.537140 | 4.4:-4768117 | MS.gene069596:CDS |
| CAACGCCATTGCTGATCCTA+GGG | 0.547334 | 4.4:+4767742 | None:intergenic |
| GACTGTCATGGCTTCTGAGA+GGG | 0.548702 | 4.4:-4768942 | None:intergenic |
| CATTCTAGAAAGGGACCGGC+AGG | 0.558168 | 4.4:-4768113 | MS.gene069596:CDS |
| TCTGATTTCAAAGAAGCTCA+TGG | 0.558600 | 4.4:-4767278 | MS.gene069596:CDS |
| CTGATTTCAAAGAAGCTCAT+GGG | 0.558680 | 4.4:-4767277 | MS.gene069596:CDS |
| TTTCTAGAATGTAAACACCT+TGG | 0.563258 | 4.4:+4768125 | None:intergenic |
| GCAACTCAAAACTCACTTGG+TGG | 0.567730 | 4.4:-4767386 | MS.gene069596:CDS |
| AAACACGGGATTCGATTCGC+TGG | 0.570003 | 4.4:-4767614 | MS.gene069596:CDS |
| TCATCCTTAATCTTCTCAAG+TGG | 0.570573 | 4.4:+4767644 | None:intergenic |
| GCTTCTTTGAAATCAGATGC+AGG | 0.570903 | 4.4:+4767284 | None:intergenic |
| CCAAACATTTGAATCACCTA+CGG | 0.570951 | 4.4:+4767778 | None:intergenic |
| ATTGATGGGTGCGTTTGGGA+AGG | 0.571774 | 4.4:-4767360 | MS.gene069596:CDS |
| TCTGAACATATATGGTCAGA+TGG | 0.574886 | 4.4:+4767476 | None:intergenic |
| TCACAGAAGCTGAAGGAATG+AGG | 0.588402 | 4.4:+4767321 | None:intergenic |
| GCTGAAGGAATGAGGTGCAA+TGG | 0.593159 | 4.4:+4767329 | None:intergenic |
| AAAATGGAGGACATTGGCGC+CGG | 0.597776 | 4.4:-4767425 | MS.gene069596:CDS |
| TCACTTGGTGGCCTATTGAT+GGG | 0.598019 | 4.4:-4767374 | MS.gene069596:CDS |
| GAAAGCCAAGCAGCAGCCAA+AGG | 0.603055 | 4.4:-4767558 | MS.gene069596:CDS |
| AAAACATAAGTCAAATGCAA+GGG | 0.606793 | 4.4:+4768899 | None:intergenic |
| CTCATGGGATTCATCAGTGG+TGG | 0.608672 | 4.4:-4767262 | MS.gene069596:CDS |
| CGAAAGGCAATCACATAACG+TGG | 0.609030 | 4.4:+4767929 | None:intergenic |
| GAATCAACATCATCTACAAG+TGG | 0.610473 | 4.4:+4768022 | None:intergenic |
| TAAAACATAAGTCAAATGCA+AGG | 0.616175 | 4.4:+4768898 | None:intergenic |
| TTAGCAACTCAAAACTCACT+TGG | 0.622601 | 4.4:-4767389 | MS.gene069596:CDS |
| TATTCAAGCTGTTCGAAACA+CGG | 0.626771 | 4.4:-4767807 | MS.gene069596:CDS |
| TCATTACATTGTGATGATGG+AGG | 0.631323 | 4.4:+4767968 | None:intergenic |
| TTAACTGTCACAGAAGCTGA+AGG | 0.632621 | 4.4:+4767314 | None:intergenic |
| TTGGCGCCGGAGTGATCGAA+AGG | 0.637059 | 4.4:-4767412 | MS.gene069596:CDS |
| TTTGGTTAGAGTTCCTCGAA+AGG | 0.637620 | 4.4:+4767913 | None:intergenic |
| GACCGGCAGGAAAAGCGTGA+AGG | 0.642700 | 4.4:-4768100 | MS.gene069596:CDS |
| ATGGATTCACAAACAAACAC+GGG | 0.643233 | 4.4:+4767495 | None:intergenic |
| ATATTGGATACTTCGAACAC+AGG | 0.644924 | 4.4:-4767451 | MS.gene069596:CDS |
| GTTGCTTACCGGGAAAACCA+TGG | 0.650087 | 4.4:-4767723 | MS.gene069596:CDS |
| AGTGGAGCAGATACAAATGG+AGG | 0.652512 | 4.4:+4767662 | None:intergenic |
| AAGCTCATGGGATTCATCAG+TGG | 0.657129 | 4.4:-4767265 | MS.gene069596:CDS |
| GATGGATTCACAAACAAACA+CGG | 0.657838 | 4.4:+4767494 | None:intergenic |
| TGCTAACCTTTCGATCACTC+CGG | 0.658661 | 4.4:+4767406 | None:intergenic |
| TAATCCATATCATCGAATGT+CGG | 0.661924 | 4.4:-4768164 | MS.gene069596:CDS |
| GTGGAGCAGATACAAATGGA+GGG | 0.663461 | 4.4:+4767663 | None:intergenic |
| CGAAACACGGTAGCAACCGT+AGG | 0.667181 | 4.4:-4767794 | MS.gene069596:CDS |
| AGGATGAGAGAGTAAAACAC+GGG | 0.670989 | 4.4:-4767628 | MS.gene069596:CDS |
| AGACTGTCATGGCTTCTGAG+AGG | 0.679942 | 4.4:-4768943 | None:intergenic |
| AAGGATGAGAGAGTAAAACA+CGG | 0.693045 | 4.4:-4767629 | MS.gene069596:CDS |
| ACACTCCCTAGGATCAGCAA+TGG | 0.700419 | 4.4:-4767747 | MS.gene069596:CDS |
| TCAAATGCAAGGGTCCTGAG+AGG | 0.714520 | 4.4:+4768909 | None:intergenic |
| CGGGACCCACGCAGACAAAG+CGG | 0.719734 | 4.4:+4767514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATGATATATACATATAA+TGG | + | chr4.4:4767938-4767957 | None:intergenic | 15.0% |
| !! | TTCTGTTTATTAAAAACTTA+AGG | - | chr4.4:4767537-4767556 | MS.gene069596:CDS | 15.0% |
| !! | AATCCTCATATATAACTATT+GGG | + | chr4.4:4767578-4767597 | None:intergenic | 20.0% |
| !! | CTTAGGAAAATACTTATAAT+AGG | + | chr4.4:4767617-4767636 | None:intergenic | 20.0% |
| !! | GTTTATTAAAAACTTAAGGT+AGG | - | chr4.4:4767541-4767560 | MS.gene069596:CDS | 20.0% |
| !! | TAAATGTAGAGAAGAAAAAT+AGG | + | chr4.4:4767501-4767520 | None:intergenic | 20.0% |
| !!! | ATACATATAATGGAAAAATG+TGG | + | chr4.4:4767928-4767947 | None:intergenic | 20.0% |
| ! | AAAACATAAGTCAAATGCAA+GGG | + | chr4.4:4767256-4767275 | None:intergenic | 25.0% |
| ! | AATCCCAATAGTTATATATG+AGG | - | chr4.4:4767572-4767591 | MS.gene069596:CDS | 25.0% |
| ! | AGGAAAATACTTATAATAGG+TGG | + | chr4.4:4767614-4767633 | None:intergenic | 25.0% |
| ! | CAAATTCTTTACAATGACAT+TGG | + | chr4.4:4767896-4767915 | None:intergenic | 25.0% |
| ! | CAATATACTCTGAACATATA+TGG | + | chr4.4:4768687-4768706 | None:intergenic | 25.0% |
| ! | CAATCCTCATATATAACTAT+TGG | + | chr4.4:4767579-4767598 | None:intergenic | 25.0% |
| ! | CATATATGTTCAGAGTATAT+TGG | - | chr4.4:4768685-4768704 | MS.gene069596:intron | 25.0% |
| ! | TAAAACATAAGTCAAATGCA+AGG | + | chr4.4:4767257-4767276 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTGCCATTCT+TGG | + | chr4.4:4768455-4768474 | None:intergenic | 25.0% |
| ! | TTGCTCTTTATTATTGTACT+TGG | - | chr4.4:4767309-4767328 | MS.gene069596:CDS | 25.0% |
| !!! | TGCATTTGACTTATGTTTTA+TGG | - | chr4.4:4767257-4767276 | MS.gene069596:CDS | 25.0% |
| CCATTATACTGTTTGATTCA+GGG | - | chr4.4:4767964-4767983 | MS.gene069596:CDS | 30.0% | |
| CCTGAATCAAACAGTATAAT+GGG | + | chr4.4:4767966-4767985 | None:intergenic | 30.0% | |
| CTGAACATGTGTTTATAAGT+GGG | + | chr4.4:4767836-4767855 | None:intergenic | 30.0% | |
| GTATCATTACATTGTGATGA+TGG | + | chr4.4:4768190-4768209 | None:intergenic | 30.0% | |
| TAATCCATATCATCGAATGT+CGG | - | chr4.4:4767988-4768007 | MS.gene069596:CDS | 30.0% | |
| TGAACATGTGTTTATAAGTG+GGG | + | chr4.4:4767835-4767854 | None:intergenic | 30.0% | |
| TTTCACTGTTATGTACAATG+AGG | + | chr4.4:4767409-4767428 | None:intergenic | 30.0% | |
| ! | AAGGTGTTTACATTCTAGAA+AGG | - | chr4.4:4768029-4768048 | MS.gene069596:CDS | 30.0% |
| ! | AGGTGTTTACATTCTAGAAA+GGG | - | chr4.4:4768030-4768049 | MS.gene069596:CDS | 30.0% |
| !! | GATGTTGATTCTTCAATCTT+TGG | - | chr4.4:4768142-4768161 | MS.gene069596:CDS | 30.0% |
| !! | TTTCTAGAATGTAAACACCT+TGG | + | chr4.4:4768030-4768049 | None:intergenic | 30.0% |
| !! | TTTTTGGTACAAAATGTCAC+AGG | + | chr4.4:4767705-4767724 | None:intergenic | 30.0% |
| AAATGGAAAAATGTCCACCA+AGG | + | chr4.4:4768097-4768116 | None:intergenic | 35.0% | |
| AACAGCTTGAATAGCTATGT+TGG | + | chr4.4:4768338-4768357 | None:intergenic | 35.0% | |
| AAGGATGAGAGAGTAAAACA+CGG | - | chr4.4:4768523-4768542 | MS.gene069596:intron | 35.0% | |
| AAGTTTGATGAAGACCTTGT+CGG | + | chr4.4:4768309-4768328 | None:intergenic | 35.0% | |
| AATTGTAGAGCTTGTATTCG+AGG | + | chr4.4:4768930-4768949 | None:intergenic | 35.0% | |
| ACTATTAAAGAGTCCCTCAT+TGG | + | chr4.4:4767871-4767890 | None:intergenic | 35.0% | |
| ATATTGGATACTTCGAACAC+AGG | - | chr4.4:4768701-4768720 | MS.gene069596:intron | 35.0% | |
| ATGGATTCACAAACAAACAC+GGG | + | chr4.4:4768660-4768679 | None:intergenic | 35.0% | |
| CAAATAGTGTCCATTCGAAT+CGG | - | chr4.4:4767638-4767657 | MS.gene069596:CDS | 35.0% | |
| CACTACATCCCTTTACATTA+GGG | - | chr4.4:4767744-4767763 | MS.gene069596:CDS | 35.0% | |
| CCAAACATTTGAATCACCTA+CGG | + | chr4.4:4768377-4768396 | None:intergenic | 35.0% | |
| CCACTTATAAACACATGTTC+AGG | - | chr4.4:4767834-4767853 | MS.gene069596:CDS | 35.0% | |
| CCCATTATACTGTTTGATTC+AGG | - | chr4.4:4767963-4767982 | MS.gene069596:CDS | 35.0% | |
| CCCTGAATCAAACAGTATAA+TGG | + | chr4.4:4767967-4767986 | None:intergenic | 35.0% | |
| CCTGAACATGTGTTTATAAG+TGG | + | chr4.4:4767837-4767856 | None:intergenic | 35.0% | |
| CTAAGAGACCCTAATGTAAA+GGG | + | chr4.4:4767755-4767774 | None:intergenic | 35.0% | |
| CTGATTTCAAAGAAGCTCAT+GGG | - | chr4.4:4768875-4768894 | MS.gene069596:intron | 35.0% | |
| GAACATGTGTTTATAAGTGG+GGG | + | chr4.4:4767834-4767853 | None:intergenic | 35.0% | |
| GAATCAACATCATCTACAAG+TGG | + | chr4.4:4768133-4768152 | None:intergenic | 35.0% | |
| GAATGGACACTATTTGTCTT+AGG | + | chr4.4:4767634-4767653 | None:intergenic | 35.0% | |
| GATTCAAATGTTTGGTTAGC+TGG | - | chr4.4:4768382-4768401 | MS.gene069596:intron | 35.0% | |
| GGATCAATGATCAAATCCTT+TGG | + | chr4.4:4768613-4768632 | None:intergenic | 35.0% | |
| TATTCAAGCTGTTCGAAACA+CGG | - | chr4.4:4768345-4768364 | MS.gene069596:intron | 35.0% | |
| TCACTACATCCCTTTACATT+AGG | - | chr4.4:4767743-4767762 | MS.gene069596:CDS | 35.0% | |
| TCATCCTTAATCTTCTCAAG+TGG | + | chr4.4:4768511-4768530 | None:intergenic | 35.0% | |
| TCTAAGAGACCCTAATGTAA+AGG | + | chr4.4:4767756-4767775 | None:intergenic | 35.0% | |
| TCTGAACATATATGGTCAGA+TGG | + | chr4.4:4768679-4768698 | None:intergenic | 35.0% | |
| TCTGATTTCAAAGAAGCTCA+TGG | - | chr4.4:4768874-4768893 | MS.gene069596:intron | 35.0% | |
| TTAGCAACTCAAAACTCACT+TGG | - | chr4.4:4768763-4768782 | MS.gene069596:intron | 35.0% | |
| ! | GATATCCATTTTATCCGACA+AGG | - | chr4.4:4768292-4768311 | MS.gene069596:intron | 35.0% |
| ! | GATGGATTCACAAACAAACA+CGG | + | chr4.4:4768661-4768680 | None:intergenic | 35.0% |
| ! | TTTACATTCTAGAAAGGGAC+CGG | - | chr4.4:4768035-4768054 | MS.gene069596:CDS | 35.0% |
| !! | TCATTACATTGTGATGATGG+AGG | + | chr4.4:4768187-4768206 | None:intergenic | 35.0% |
| AAAATTGCCATTCTTGGCCA+TGG | + | chr4.4:4768449-4768468 | None:intergenic | 40.0% | |
| AGGAGAAAAATGGAGGACAT+TGG | - | chr4.4:4768721-4768740 | MS.gene069596:intron | 40.0% | |
| AGGATGAGAGAGTAAAACAC+GGG | - | chr4.4:4768524-4768543 | MS.gene069596:intron | 40.0% | |
| CATCCCTAACTAGATCAATG+CGG | + | chr4.4:4767664-4767683 | None:intergenic | 40.0% | |
| CATTGATCTAGTTAGGGATG+GGG | - | chr4.4:4767664-4767683 | MS.gene069596:CDS | 40.0% | |
| CCGTAGGTGATTCAAATGTT+TGG | - | chr4.4:4768374-4768393 | MS.gene069596:intron | 40.0% | |
| CTTCGAACACAGGAGAAAAA+TGG | - | chr4.4:4768711-4768730 | MS.gene069596:intron | 40.0% | |
| GAAGACCTTGTCGGATAAAA+TGG | + | chr4.4:4768300-4768319 | None:intergenic | 40.0% | |
| GAGGACAACCAATACTAACA+AGG | + | chr4.4:4767390-4767409 | None:intergenic | 40.0% | |
| GTCTCTTAGAAATCGTGGTT+GGG | - | chr4.4:4767766-4767785 | MS.gene069596:CDS | 40.0% | |
| TAAAGGGATGTAGTGAAGCT+TGG | + | chr4.4:4767739-4767758 | None:intergenic | 40.0% | |
| TCAAGTGGAGCAGATACAAA+TGG | + | chr4.4:4768496-4768515 | None:intergenic | 40.0% | |
| TGCTCCACTTGAGAAGATTA+AGG | - | chr4.4:4768504-4768523 | MS.gene069596:intron | 40.0% | |
| TTAACTGTCACAGAAGCTGA+AGG | + | chr4.4:4768841-4768860 | None:intergenic | 40.0% | |
| TTAGGGTCTCTTAGAAATCG+TGG | - | chr4.4:4767761-4767780 | MS.gene069596:CDS | 40.0% | |
| TTTGGTTAGAGTTCCTCGAA+AGG | + | chr4.4:4768242-4768261 | None:intergenic | 40.0% | |
| ! | CTTCTCTGCCTTGTTAGTAT+TGG | - | chr4.4:4767379-4767398 | MS.gene069596:CDS | 40.0% |
| ! | GCATTGATCTAGTTAGGGAT+GGG | - | chr4.4:4767663-4767682 | MS.gene069596:CDS | 40.0% |
| !! | GCTTCTTTGAAATCAGATGC+AGG | + | chr4.4:4768871-4768890 | None:intergenic | 40.0% |
| !!! | CTTGGTGGTGTGTTTGTTTT+TGG | + | chr4.4:4767721-4767740 | None:intergenic | 40.0% |
| AAGCTCATGGGATTCATCAG+TGG | - | chr4.4:4768887-4768906 | MS.gene069596:intron | 45.0% | |
| AGTGGAGCAGATACAAATGG+AGG | + | chr4.4:4768493-4768512 | None:intergenic | 45.0% | |
| ATTTACCGCTTTGTCTGCGT+GGG | - | chr4.4:4768633-4768652 | MS.gene069596:intron | 45.0% | |
| CGAAAGGCAATCACATAACG+TGG | + | chr4.4:4768226-4768245 | None:intergenic | 45.0% | |
| CGAACACAGGAGAAAAATGG+AGG | - | chr4.4:4768714-4768733 | MS.gene069596:intron | 45.0% | |
| CGTTATGTGATTGCCTTTCG+AGG | - | chr4.4:4768226-4768245 | MS.gene069596:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr4.4:4767790-4767809 | MS.gene069596:CDS | 45.0% | |
| GCAACCGACATTCGATGATA+TGG | + | chr4.4:4767995-4768014 | None:intergenic | 45.0% | |
| GCAACTCAAAACTCACTTGG+TGG | - | chr4.4:4768766-4768785 | MS.gene069596:intron | 45.0% | |
| GGTCTCTTAGAAATCGTGGT+TGG | - | chr4.4:4767765-4767784 | MS.gene069596:CDS | 45.0% | |
| GTCCCTCATTGGACAAAAGA+TGG | + | chr4.4:4767860-4767879 | None:intergenic | 45.0% | |
| GTGGACGAAGTAGCTGAAAA+TGG | + | chr4.4:4768114-4768133 | None:intergenic | 45.0% | |
| GTGGAGCAGATACAAATGGA+GGG | + | chr4.4:4768492-4768511 | None:intergenic | 45.0% | |
| TCACAGAAGCTGAAGGAATG+AGG | + | chr4.4:4768834-4768853 | None:intergenic | 45.0% | |
| TGCTAACCTTTCGATCACTC+CGG | + | chr4.4:4768749-4768768 | None:intergenic | 45.0% | |
| TGGAAAAATGTCCACCAAGG+TGG | + | chr4.4:4768094-4768113 | None:intergenic | 45.0% | |
| ! | AATGTCGGTTGCTGCTTGTT+TGG | - | chr4.4:4768003-4768022 | MS.gene069596:CDS | 45.0% |
| ! | AGGCCATCTTTTGTCCAATG+AGG | - | chr4.4:4767854-4767873 | MS.gene069596:CDS | 45.0% |
| ! | ATTCTTGGCCATGGTTTTCC+CGG | + | chr4.4:4768440-4768459 | None:intergenic | 45.0% |
| ! | CGCATTGATCTAGTTAGGGA+TGG | - | chr4.4:4767662-4767681 | MS.gene069596:CDS | 45.0% |
| ! | CTGCTTGGCTTTCATAGCTA+AGG | + | chr4.4:4768587-4768606 | None:intergenic | 45.0% |
| ! | GGCCATCTTTTGTCCAATGA+GGG | - | chr4.4:4767855-4767874 | MS.gene069596:CDS | 45.0% |
| ! | TCACTTGGTGGCCTATTGAT+GGG | - | chr4.4:4768778-4768797 | MS.gene069596:intron | 45.0% |
| !! | AGGGAAAGTTTTGACCTCTC+AGG | - | chr4.4:4767229-4767248 | MS.gene069596:CDS | 45.0% |
| AAAATGGAGGACATTGGCGC+CGG | - | chr4.4:4768727-4768746 | MS.gene069596:intron | 50.0% | |
| ACACTCCCTAGGATCAGCAA+TGG | - | chr4.4:4768405-4768424 | MS.gene069596:intron | 50.0% | |
| ACGCGAAACTGAGTGTGCTT+TGG | + | chr4.4:4768260-4768279 | None:intergenic | 50.0% | |
| AGGGATGTAGTGAAGCTTGG+TGG | + | chr4.4:4767736-4767755 | None:intergenic | 50.0% | |
| CAAATCCTTTGGCTGCTGCT+TGG | + | chr4.4:4768602-4768621 | None:intergenic | 50.0% | |
| CAACGCCATTGCTGATCCTA+GGG | + | chr4.4:4768413-4768432 | None:intergenic | 50.0% | |
| CACGCAGACAAAGCGGTAAA+TGG | + | chr4.4:4768634-4768653 | None:intergenic | 50.0% | |
| CATTTACCGCTTTGTCTGCG+TGG | - | chr4.4:4768632-4768651 | MS.gene069596:intron | 50.0% | |
| CTCATGGGATTCATCAGTGG+TGG | - | chr4.4:4768890-4768909 | MS.gene069596:intron | 50.0% | |
| CTTGTATTCGAGGCGCAAGT+CGG | + | chr4.4:4768920-4768939 | None:intergenic | 50.0% | |
| GCTGAAGGAATGAGGTGCAA+TGG | + | chr4.4:4768826-4768845 | None:intergenic | 50.0% | |
| GGGAAAACCATGGCCAAGAA+TGG | - | chr4.4:4768439-4768458 | MS.gene069596:intron | 50.0% | |
| GTTGCTTACCGGGAAAACCA+TGG | - | chr4.4:4768429-4768448 | MS.gene069596:intron | 50.0% | |
| TCAAATGCAAGGGTCCTGAG+AGG | + | chr4.4:4767246-4767265 | None:intergenic | 50.0% | |
| TCAGCAATGGCGTTGCTTAC+CGG | - | chr4.4:4768418-4768437 | MS.gene069596:intron | 50.0% | |
| TCCCAAACGCACCCATCAAT+AGG | + | chr4.4:4768792-4768811 | None:intergenic | 50.0% | |
| TTGTATTCGAGGCGCAAGTC+GGG | + | chr4.4:4768919-4768938 | None:intergenic | 50.0% | |
| ! | AAACACGGGATTCGATTCGC+TGG | - | chr4.4:4768538-4768557 | MS.gene069596:intron | 50.0% |
| ! | AACCTTCACGCTTTTCCTGC+CGG | + | chr4.4:4768057-4768076 | None:intergenic | 50.0% |
| ! | ATTGATGGGTGCGTTTGGGA+AGG | - | chr4.4:4768792-4768811 | MS.gene069596:intron | 50.0% |
| ! | CGGCCGCATTGATCTAGTTA+GGG | - | chr4.4:4767658-4767677 | MS.gene069596:CDS | 50.0% |
| ! | CTCACTTGGTGGCCTATTGA+TGG | - | chr4.4:4768777-4768796 | MS.gene069596:intron | 50.0% |
| ! | GCCTATTGATGGGTGCGTTT+GGG | - | chr4.4:4768788-4768807 | MS.gene069596:intron | 50.0% |
| ! | GTTGCTGCTTGTTTGGTCCA+AGG | - | chr4.4:4768010-4768029 | MS.gene069596:CDS | 50.0% |
| ! | TCGGCCGCATTGATCTAGTT+AGG | - | chr4.4:4767657-4767676 | MS.gene069596:CDS | 50.0% |
| !! | ATCAATGCGGCCGATTCGAA+TGG | + | chr4.4:4767651-4767670 | None:intergenic | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr4.4:4767792-4767811 | None:intergenic | 50.0% |
| CAGCAATGGCGTTGCTTACC+GGG | - | chr4.4:4768419-4768438 | MS.gene069596:intron | 55.0% | |
| CGAAACACGGTAGCAACCGT+AGG | - | chr4.4:4768358-4768377 | MS.gene069596:intron | 55.0% | |
| GAAAGCCAAGCAGCAGCCAA+AGG | - | chr4.4:4768594-4768613 | MS.gene069596:intron | 55.0% | |
| GCAACGCCATTGCTGATCCT+AGG | + | chr4.4:4768414-4768433 | None:intergenic | 55.0% | |
| ! | CATTCTAGAAAGGGACCGGC+AGG | - | chr4.4:4768039-4768058 | MS.gene069596:CDS | 55.0% |
| ! | GGCCTATTGATGGGTGCGTT+TGG | - | chr4.4:4768787-4768806 | MS.gene069596:intron | 55.0% |
| ! | TGGTTAGCTGGACACTCCCT+AGG | - | chr4.4:4768394-4768413 | MS.gene069596:intron | 55.0% |
| !! | AACCCCACAAAACCGGCTTG+TGG | - | chr4.4:4767797-4767816 | MS.gene069596:CDS | 55.0% |
| !! | ACCCCACAAAACCGGCTTGT+GGG | - | chr4.4:4767798-4767817 | MS.gene069596:CDS | 55.0% |
| !! | ACCCCACAAGCCGGTTTTGT+GGG | + | chr4.4:4767803-4767822 | None:intergenic | 55.0% |
| GCAATCCTCACCCCACAAGC+CGG | + | chr4.4:4767812-4767831 | None:intergenic | 60.0% | |
| GCTGGCAGCGTGATAACAGC+TGG | - | chr4.4:4768556-4768575 | MS.gene069596:intron | 60.0% | |
| ! | GACCGGCAGGAAAAGCGTGA+AGG | - | chr4.4:4768052-4768071 | MS.gene069596:CDS | 60.0% |
| ! | TTGGCGCCGGAGTGATCGAA+AGG | - | chr4.4:4768740-4768759 | MS.gene069596:intron | 60.0% |
| !! | CAAAACCGGCTTGTGGGGTG+AGG | - | chr4.4:4767804-4767823 | MS.gene069596:CDS | 60.0% |
| !! | CACCCCACAAGCCGGTTTTG+TGG | + | chr4.4:4767804-4767823 | None:intergenic | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+GGG | - | chr4.4:4767799-4767818 | MS.gene069596:CDS | 60.0% |
| !! | CCCCACAAGCCGGTTTTGTG+GGG | + | chr4.4:4767802-4767821 | None:intergenic | 60.0% |
| ATGCTCTCGCGCCACCTTGG+TGG | - | chr4.4:4768080-4768099 | MS.gene069596:CDS | 65.0% | |
| CAGATGCTCTCGCGCCACCT+TGG | - | chr4.4:4768077-4768096 | MS.gene069596:CDS | 65.0% | |
| CGGGACCCACGCAGACAAAG+CGG | + | chr4.4:4768641-4768660 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4767217 | 4768957 | 4767217 | ID=MS.gene069596 |
| chr4.4 | mRNA | 4767217 | 4768957 | 4767217 | ID=MS.gene069596.t1;Parent=MS.gene069596 |
| chr4.4 | exon | 4768896 | 4768957 | 4768896 | ID=MS.gene069596.t1.exon1;Parent=MS.gene069596.t1 |
| chr4.4 | CDS | 4768896 | 4768957 | 4768896 | ID=cds.MS.gene069596.t1;Parent=MS.gene069596.t1 |
| chr4.4 | exon | 4767217 | 4768189 | 4767217 | ID=MS.gene069596.t1.exon2;Parent=MS.gene069596.t1 |
| chr4.4 | CDS | 4767217 | 4768189 | 4767217 | ID=cds.MS.gene069596.t1;Parent=MS.gene069596.t1 |
| Gene Sequence |
| Protein sequence |
