Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06080.t1 | XP_013447210.1 | 98.5 | 344 | 5 | 0 | 1 | 344 | 1 | 344 | 2.40E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06080.t1 | Q680C0 | 62.3 | 353 | 120 | 5 | 1 | 344 | 2 | 350 | 1.5e-125 | 450.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06080.t1 | A0A072TUX4 | 98.5 | 344 | 5 | 0 | 1 | 344 | 1 | 344 | 1.7e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052494 | MS.gene06080 | 0.80091 | 1.15E-48 | -1.69E-46 |
| MS.gene05960 | MS.gene06080 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene063062 | 0.80057 | 1.35E-48 | -1.69E-46 |
| MS.gene06080 | MS.gene063698 | 0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene064724 | 0.843631 | 1.24E-58 | -1.69E-46 |
| MS.gene06080 | MS.gene064868 | 0.806536 | 7.84E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene065682 | 0.823622 | 1.25E-53 | -1.69E-46 |
| MS.gene06080 | MS.gene066779 | 0.808126 | 3.61E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene067960 | 0.802409 | 5.69E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene069596 | 0.874688 | 5.55E-68 | -1.69E-46 |
| MS.gene06080 | MS.gene071422 | 0.817288 | 3.56E-52 | -1.69E-46 |
| MS.gene06080 | MS.gene073062 | 0.806407 | 8.35E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene20932 | -0.809186 | 2.14E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene22399 | 0.822623 | 2.15E-53 | -1.69E-46 |
| MS.gene06080 | MS.gene23588 | 0.814653 | 1.38E-51 | -1.69E-46 |
| MS.gene06080 | MS.gene28494 | -0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene06080 | MS.gene31351 | -0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene33776 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene34207 | 0.823032 | 1.72E-53 | -1.69E-46 |
| MS.gene06080 | MS.gene36077 | 0.830703 | 2.53E-55 | -1.69E-46 |
| MS.gene06080 | MS.gene38366 | 0.827779 | 1.30E-54 | -1.69E-46 |
| MS.gene06080 | MS.gene38577 | 0.801842 | 7.44E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene38698 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene39911 | 0.839695 | 1.36E-57 | -1.69E-46 |
| MS.gene06080 | MS.gene41334 | -0.805823 | 1.11E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene42290 | 0.851872 | 6.69E-61 | -1.69E-46 |
| MS.gene06080 | MS.gene44440 | -0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene47437 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene49349 | 0.841028 | 6.09E-58 | -1.69E-46 |
| MS.gene06080 | MS.gene50576 | 0.838272 | 3.17E-57 | -1.69E-46 |
| MS.gene06080 | MS.gene51554 | 0.80017 | 1.63E-48 | -1.69E-46 |
| MS.gene06080 | MS.gene53490 | 0.810216 | 1.29E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene54718 | -0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene54826 | -0.804075 | 2.57E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene55401 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene06080 | MS.gene55771 | 0.834258 | 3.33E-56 | -1.69E-46 |
| MS.gene06080 | MS.gene57908 | 0.819809 | 9.55E-53 | -1.69E-46 |
| MS.gene06080 | MS.gene57998 | -0.805782 | 1.13E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene58165 | -0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene06080 | MS.gene61145 | -0.806973 | 6.34E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene61722 | 0.806716 | 7.19E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene62884 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene06080 | MS.gene66827 | 0.829769 | 4.28E-55 | -1.69E-46 |
| MS.gene06080 | MS.gene70306 | -0.826511 | 2.61E-54 | -1.69E-46 |
| MS.gene06080 | MS.gene70491 | 0.802376 | 5.78E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene71391 | 0.817429 | 3.31E-52 | -1.69E-46 |
| MS.gene06080 | MS.gene72164 | 0.818042 | 2.41E-52 | -1.69E-46 |
| MS.gene06080 | MS.gene75179 | 0.81446 | 1.52E-51 | -1.69E-46 |
| MS.gene06080 | MS.gene75918 | 0.804583 | 2.01E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene77595 | 0.808089 | 3.68E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene87400 | -0.813415 | 2.59E-51 | -1.69E-46 |
| MS.gene06080 | MS.gene91075 | 0.81021 | 1.29E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene93058 | 0.811393 | 7.16E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06080.t1 | MTR_8g099555 | 98.547 | 344 | 5 | 0 | 1 | 344 | 1 | 344 | 0.0 | 708 |
| MS.gene06080.t1 | MTR_5g028370 | 66.859 | 347 | 109 | 2 | 1 | 344 | 13 | 356 | 7.28e-170 | 477 |
| MS.gene06080.t1 | MTR_5g028370 | 66.859 | 347 | 109 | 2 | 1 | 344 | 1 | 344 | 7.51e-170 | 476 |
| MS.gene06080.t1 | MTR_5g009140 | 64.162 | 346 | 102 | 5 | 1 | 343 | 1 | 327 | 1.61e-157 | 444 |
| MS.gene06080.t1 | MTR_5g009140 | 69.565 | 253 | 73 | 2 | 93 | 343 | 21 | 271 | 1.62e-129 | 371 |
| MS.gene06080.t1 | MTR_3g046880 | 32.507 | 363 | 203 | 8 | 7 | 344 | 40 | 385 | 2.62e-57 | 191 |
| MS.gene06080.t1 | MTR_5g091200 | 31.978 | 369 | 195 | 9 | 6 | 344 | 15 | 357 | 5.31e-56 | 187 |
| MS.gene06080.t1 | MTR_5g091240 | 29.326 | 341 | 196 | 6 | 21 | 339 | 35 | 352 | 3.09e-37 | 142 |
| MS.gene06080.t1 | MTR_5g091230 | 29.352 | 293 | 167 | 7 | 64 | 339 | 12 | 281 | 1.35e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06080.t1 | AT4G10955 | 62.323 | 353 | 120 | 5 | 1 | 344 | 2 | 350 | 3.97e-159 | 449 |
| MS.gene06080.t1 | AT4G10955 | 62.323 | 353 | 120 | 5 | 1 | 344 | 2 | 350 | 3.97e-159 | 449 |
| MS.gene06080.t1 | AT2G05260 | 57.778 | 360 | 134 | 4 | 1 | 344 | 1 | 358 | 1.55e-145 | 415 |
| MS.gene06080.t1 | AT5G24230 | 52.691 | 353 | 157 | 3 | 1 | 343 | 15 | 367 | 9.39e-127 | 368 |
| MS.gene06080.t1 | AT5G24230 | 52.691 | 353 | 157 | 3 | 1 | 343 | 15 | 367 | 9.39e-127 | 368 |
| MS.gene06080.t1 | AT5G24230 | 52.691 | 353 | 157 | 3 | 1 | 343 | 15 | 367 | 9.39e-127 | 368 |
| MS.gene06080.t1 | AT2G05260 | 59.649 | 285 | 104 | 2 | 1 | 276 | 1 | 283 | 6.73e-118 | 343 |
| MS.gene06080.t1 | AT5G24180 | 47.661 | 342 | 166 | 5 | 2 | 336 | 17 | 352 | 3.50e-104 | 311 |
| MS.gene06080.t1 | AT5G24220 | 45.104 | 337 | 173 | 6 | 3 | 333 | 20 | 350 | 4.40e-99 | 298 |
| MS.gene06080.t1 | AT5G24200 | 43.516 | 347 | 171 | 6 | 1 | 334 | 1 | 335 | 7.32e-85 | 260 |
| MS.gene06080.t1 | AT5G24200 | 43.516 | 347 | 171 | 6 | 1 | 334 | 1 | 335 | 7.32e-85 | 260 |
| MS.gene06080.t1 | AT5G24200 | 43.516 | 347 | 171 | 6 | 1 | 334 | 1 | 335 | 7.32e-85 | 260 |
| MS.gene06080.t1 | AT5G24210 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 5.07e-67 | 214 |
| MS.gene06080.t1 | AT5G24210 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 5.07e-67 | 214 |
| MS.gene06080.t1 | AT5G24210 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 5.07e-67 | 214 |
| MS.gene06080.t1 | AT5G50890 | 30.000 | 380 | 195 | 11 | 7 | 344 | 45 | 395 | 7.15e-52 | 177 |
| MS.gene06080.t1 | AT5G24190 | 39.662 | 237 | 120 | 5 | 120 | 339 | 3 | 233 | 4.78e-49 | 165 |
Find 89 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATAAAATTGCCATTCT+TGG | 0.149620 | 4.1:+4495356 | None:intergenic |
| GAAGACCTTGTCGGATAAAA+TGG | 0.245157 | 4.1:+4495511 | None:intergenic |
| CACGCAGACAAAGCGGTAAA+TGG | 0.291245 | 4.1:+4495177 | None:intergenic |
| GATGTTGATTCTTCAATCTT+TGG | 0.297635 | 4.1:-4495666 | MS.gene06080:CDS |
| GCCTATTGATGGGTGCGTTT+GGG | 0.317566 | 4.1:-4495020 | MS.gene06080:CDS |
| GGCCTATTGATGGGTGCGTT+TGG | 0.329441 | 4.1:-4495021 | MS.gene06080:CDS |
| TCAGCAATGGCGTTGCTTAC+CGG | 0.343704 | 4.1:-4495390 | MS.gene06080:CDS |
| GCAACCGACATTCGATGATA+TGG | 0.350071 | 4.1:+4495816 | None:intergenic |
| TGCTCCACTTGAGAAGATTA+AGG | 0.353443 | 4.1:-4495304 | MS.gene06080:CDS |
| GTGGACGAAGTAGCTGAAAA+TGG | 0.354438 | 4.1:+4495697 | None:intergenic |
| GATTCAAATGTTTGGTTAGC+TGG | 0.363493 | 4.1:-4495426 | MS.gene06080:CDS |
| CATATATGTTCAGAGTATAT+TGG | 0.378678 | 4.1:-4495123 | MS.gene06080:CDS |
| AATGTCGGTTGCTGCTTGTT+TGG | 0.384074 | 4.1:-4495805 | MS.gene06080:CDS |
| CAATATACTCTGAACATATA+TGG | 0.388402 | 4.1:+4495124 | None:intergenic |
| CAAATCCTTTGGCTGCTGCT+TGG | 0.403289 | 4.1:+4495209 | None:intergenic |
| CAGATGCTCTCGCGCCACCT+TGG | 0.409462 | 4.1:-4495731 | MS.gene06080:CDS |
| CAGCAATGGCGTTGCTTACC+GGG | 0.409487 | 4.1:-4495389 | MS.gene06080:CDS |
| CCGTAGGTGATTCAAATGTT+TGG | 0.418741 | 4.1:-4495434 | MS.gene06080:CDS |
| ATGCTCTCGCGCCACCTTGG+TGG | 0.428156 | 4.1:-4495728 | MS.gene06080:CDS |
| CTCACTTGGTGGCCTATTGA+TGG | 0.435218 | 4.1:-4495031 | MS.gene06080:CDS |
| CTGCTTGGCTTTCATAGCTA+AGG | 0.439296 | 4.1:+4495224 | None:intergenic |
| GGATCAATGATCAAATCCTT+TGG | 0.440563 | 4.1:+4495198 | None:intergenic |
| ACGCGAAACTGAGTGTGCTT+TGG | 0.446648 | 4.1:+4495551 | None:intergenic |
| CGTTATGTGATTGCCTTTCG+AGG | 0.456609 | 4.1:-4495582 | MS.gene06080:CDS |
| TGGTTAGCTGGACACTCCCT+AGG | 0.462096 | 4.1:-4495414 | MS.gene06080:CDS |
| AACAGCTTGAATAGCTATGT+TGG | 0.463975 | 4.1:+4495473 | None:intergenic |
| TCCCAAACGCACCCATCAAT+AGG | 0.464827 | 4.1:+4495019 | None:intergenic |
| AAGGTGTTTACATTCTAGAA+AGG | 0.471907 | 4.1:-4495779 | MS.gene06080:CDS |
| AATTGTAGAGCTTGTATTCG+AGG | 0.472190 | 4.1:+4494881 | None:intergenic |
| TTGTATTCGAGGCGCAAGTC+GGG | 0.477930 | 4.1:+4494892 | None:intergenic |
| TCAAGTGGAGCAGATACAAA+TGG | 0.493988 | 4.1:+4495315 | None:intergenic |
| AAGTTTGATGAAGACCTTGT+CGG | 0.506452 | 4.1:+4495502 | None:intergenic |
| GTATCATTACATTGTGATGA+TGG | 0.508058 | 4.1:+4495621 | None:intergenic |
| GCAACGCCATTGCTGATCCT+AGG | 0.511330 | 4.1:+4495397 | None:intergenic |
| AGGTGTTTACATTCTAGAAA+GGG | 0.514102 | 4.1:-4495778 | MS.gene06080:CDS |
| ATTTACCGCTTTGTCTGCGT+GGG | 0.514949 | 4.1:-4495175 | MS.gene06080:CDS |
| CATTTACCGCTTTGTCTGCG+TGG | 0.516796 | 4.1:-4495176 | MS.gene06080:CDS |
| CTTGTATTCGAGGCGCAAGT+CGG | 0.518354 | 4.1:+4494891 | None:intergenic |
| GTTGCTGCTTGTTTGGTCCA+AGG | 0.521199 | 4.1:-4495798 | MS.gene06080:CDS |
| GGGAAAACCATGGCCAAGAA+TGG | 0.525436 | 4.1:-4495369 | MS.gene06080:CDS |
| AAAATTGCCATTCTTGGCCA+TGG | 0.526431 | 4.1:+4495362 | None:intergenic |
| GCTGGCAGCGTGATAACAGC+TGG | 0.531939 | 4.1:-4495252 | MS.gene06080:CDS |
| TTTACATTCTAGAAAGGGAC+CGG | 0.537140 | 4.1:-4495773 | MS.gene06080:CDS |
| CAACGCCATTGCTGATCCTA+GGG | 0.547334 | 4.1:+4495398 | None:intergenic |
| GACTGTCATGGCTTCTGAGA+GGG | 0.548702 | 4.1:-4496599 | None:intergenic |
| CATTCTAGAAAGGGACCGGC+AGG | 0.558168 | 4.1:-4495769 | MS.gene06080:CDS |
| TCTGATTTCAAAGAAGCTCA+TGG | 0.558600 | 4.1:-4494934 | MS.gene06080:CDS |
| CTGATTTCAAAGAAGCTCAT+GGG | 0.558680 | 4.1:-4494933 | MS.gene06080:CDS |
| TTTCTAGAATGTAAACACCT+TGG | 0.563258 | 4.1:+4495781 | None:intergenic |
| GCAACTCAAAACTCACTTGG+TGG | 0.567730 | 4.1:-4495042 | MS.gene06080:CDS |
| AAACACGGGATTCGATTCGC+TGG | 0.570003 | 4.1:-4495270 | MS.gene06080:CDS |
| TCATCCTTAATCTTCTCAAG+TGG | 0.570573 | 4.1:+4495300 | None:intergenic |
| GCTTCTTTGAAATCAGATGC+AGG | 0.570903 | 4.1:+4494940 | None:intergenic |
| CCAAACATTTGAATCACCTA+CGG | 0.570951 | 4.1:+4495434 | None:intergenic |
| ATTGATGGGTGCGTTTGGGA+AGG | 0.571774 | 4.1:-4495016 | MS.gene06080:CDS |
| TCTGAACATATATGGTCAGA+TGG | 0.574886 | 4.1:+4495132 | None:intergenic |
| TCACAGAAGCTGAAGGAATG+AGG | 0.588402 | 4.1:+4494977 | None:intergenic |
| GCTGAAGGAATGAGGTGCAA+TGG | 0.593159 | 4.1:+4494985 | None:intergenic |
| AAAATGGAGGACATTGGCGC+CGG | 0.597776 | 4.1:-4495081 | MS.gene06080:CDS |
| TCACTTGGTGGCCTATTGAT+GGG | 0.598019 | 4.1:-4495030 | MS.gene06080:CDS |
| GAAAGCCAAGCAGCAGCCAA+AGG | 0.603055 | 4.1:-4495214 | MS.gene06080:CDS |
| AAAACATAAGTCAAATGCAA+GGG | 0.606793 | 4.1:+4496556 | None:intergenic |
| CTCATGGGATTCATCAGTGG+TGG | 0.608672 | 4.1:-4494918 | MS.gene06080:CDS |
| CGAAAGGCAATCACATAACG+TGG | 0.609030 | 4.1:+4495585 | None:intergenic |
| GAATCAACATCATCTACAAG+TGG | 0.610473 | 4.1:+4495678 | None:intergenic |
| TAAAACATAAGTCAAATGCA+AGG | 0.616175 | 4.1:+4496555 | None:intergenic |
| TTAGCAACTCAAAACTCACT+TGG | 0.622601 | 4.1:-4495045 | MS.gene06080:CDS |
| TCATTACATTGTGATGATGG+AGG | 0.631323 | 4.1:+4495624 | None:intergenic |
| TTAACTGTCACAGAAGCTGA+AGG | 0.632621 | 4.1:+4494970 | None:intergenic |
| TTGGCGCCGGAGTGATCGAA+AGG | 0.637059 | 4.1:-4495068 | MS.gene06080:CDS |
| TTTGGTTAGAGTTCCTCGAA+AGG | 0.637620 | 4.1:+4495569 | None:intergenic |
| GACCGGCAGGAAAAGCGTGA+AGG | 0.642700 | 4.1:-4495756 | MS.gene06080:CDS |
| ATGGATTCACAAACAAACAC+GGG | 0.643233 | 4.1:+4495151 | None:intergenic |
| ATATTGGATACTTCGAACAC+AGG | 0.644924 | 4.1:-4495107 | MS.gene06080:CDS |
| GTTGCTTACCGGGAAAACCA+TGG | 0.650087 | 4.1:-4495379 | MS.gene06080:CDS |
| AGTGGAGCAGATACAAATGG+AGG | 0.652512 | 4.1:+4495318 | None:intergenic |
| AAGCTCATGGGATTCATCAG+TGG | 0.657129 | 4.1:-4494921 | MS.gene06080:CDS |
| GATGGATTCACAAACAAACA+CGG | 0.657838 | 4.1:+4495150 | None:intergenic |
| TGCTAACCTTTCGATCACTC+CGG | 0.658661 | 4.1:+4495062 | None:intergenic |
| TAATCCATATCATCGAATGT+CGG | 0.661924 | 4.1:-4495820 | MS.gene06080:CDS |
| GTGGAGCAGATACAAATGGA+GGG | 0.663461 | 4.1:+4495319 | None:intergenic |
| CAAAACACGGTAGCAACCGT+AGG | 0.668475 | 4.1:-4495450 | MS.gene06080:CDS |
| AGGATGAGAGAGTAAAACAC+GGG | 0.670989 | 4.1:-4495284 | MS.gene06080:CDS |
| TATTCAAGCTGTTCAAAACA+CGG | 0.677429 | 4.1:-4495463 | MS.gene06080:CDS |
| AGACTGTCATGGCTTCTGAG+AGG | 0.679942 | 4.1:-4496600 | None:intergenic |
| AAGGATGAGAGAGTAAAACA+CGG | 0.693045 | 4.1:-4495285 | MS.gene06080:CDS |
| ACACTCCCTAGGATCAGCAA+TGG | 0.700419 | 4.1:-4495403 | MS.gene06080:CDS |
| TCAAATGCAAGGGTCCTGAG+AGG | 0.714520 | 4.1:+4496566 | None:intergenic |
| CGGGACCCACGCAGACAAAG+CGG | 0.719734 | 4.1:+4495170 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATGATATATACATATAA+TGG | + | chr4.1:4495595-4495614 | None:intergenic | 15.0% |
| !! | TTCTGTTTATTAAAAACTTA+AGG | - | chr4.1:4495193-4495212 | MS.gene06080:CDS | 15.0% |
| !! | AATCCTCATATATAACTATT+GGG | + | chr4.1:4495234-4495253 | None:intergenic | 20.0% |
| !! | CTTAGGAAAATACTTATAAT+AGG | + | chr4.1:4495273-4495292 | None:intergenic | 20.0% |
| !! | GTTTATTAAAAACTTAAGGT+AGG | - | chr4.1:4495197-4495216 | MS.gene06080:CDS | 20.0% |
| !! | TAAATGTAGAGAAGAAAAAT+AGG | + | chr4.1:4495157-4495176 | None:intergenic | 20.0% |
| !!! | ATACATATAATGGAAAAATG+TGG | + | chr4.1:4495585-4495604 | None:intergenic | 20.0% |
| ! | AAAACATAAGTCAAATGCAA+GGG | + | chr4.1:4494912-4494931 | None:intergenic | 25.0% |
| ! | AATCCCAATAGTTATATATG+AGG | - | chr4.1:4495228-4495247 | MS.gene06080:CDS | 25.0% |
| ! | AGGAAAATACTTATAATAGG+TGG | + | chr4.1:4495270-4495289 | None:intergenic | 25.0% |
| ! | CAAATTCTTTACAATGACAT+TGG | + | chr4.1:4495553-4495572 | None:intergenic | 25.0% |
| ! | CAATATACTCTGAACATATA+TGG | + | chr4.1:4496344-4496363 | None:intergenic | 25.0% |
| ! | CAATCCTCATATATAACTAT+TGG | + | chr4.1:4495235-4495254 | None:intergenic | 25.0% |
| ! | CATATATGTTCAGAGTATAT+TGG | - | chr4.1:4496342-4496361 | MS.gene06080:intron | 25.0% |
| ! | TAAAACATAAGTCAAATGCA+AGG | + | chr4.1:4494913-4494932 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTGCCATTCT+TGG | + | chr4.1:4496112-4496131 | None:intergenic | 25.0% |
| ! | TTGCTCTTTATTATTGTACT+TGG | - | chr4.1:4494965-4494984 | MS.gene06080:CDS | 25.0% |
| !!! | TGCATTTGACTTATGTTTTA+TGG | - | chr4.1:4494913-4494932 | MS.gene06080:CDS | 25.0% |
| AAATAGTGTCCAATTCGAAT+CGG | - | chr4.1:4495295-4495314 | MS.gene06080:CDS | 30.0% | |
| AATTGGACACTATTTGTCTT+AGG | + | chr4.1:4495290-4495309 | None:intergenic | 30.0% | |
| CCATTATACTGTTTGATTCA+GGG | - | chr4.1:4495621-4495640 | MS.gene06080:CDS | 30.0% | |
| CCTGAATCAAACAGTATAAT+GGG | + | chr4.1:4495623-4495642 | None:intergenic | 30.0% | |
| CTGAACATGTGTTTATAAGT+GGG | + | chr4.1:4495493-4495512 | None:intergenic | 30.0% | |
| GTATCATTACATTGTGATGA+TGG | + | chr4.1:4495847-4495866 | None:intergenic | 30.0% | |
| TAATCCATATCATCGAATGT+CGG | - | chr4.1:4495645-4495664 | MS.gene06080:CDS | 30.0% | |
| TATTCAAGCTGTTCAAAACA+CGG | - | chr4.1:4496002-4496021 | MS.gene06080:intron | 30.0% | |
| TGAACATGTGTTTATAAGTG+GGG | + | chr4.1:4495492-4495511 | None:intergenic | 30.0% | |
| TTTCACTGTTATGTACAATG+AGG | + | chr4.1:4495065-4495084 | None:intergenic | 30.0% | |
| ! | AAGGTGTTTACATTCTAGAA+AGG | - | chr4.1:4495686-4495705 | MS.gene06080:CDS | 30.0% |
| ! | AGGTGTTTACATTCTAGAAA+GGG | - | chr4.1:4495687-4495706 | MS.gene06080:CDS | 30.0% |
| !! | GATGTTGATTCTTCAATCTT+TGG | - | chr4.1:4495799-4495818 | MS.gene06080:CDS | 30.0% |
| !! | TTTCTAGAATGTAAACACCT+TGG | + | chr4.1:4495687-4495706 | None:intergenic | 30.0% |
| !! | TTTTTGGTACAAAATGTCAC+AGG | + | chr4.1:4495362-4495381 | None:intergenic | 30.0% |
| AAATGGAAAAATGTCCACCA+AGG | + | chr4.1:4495754-4495773 | None:intergenic | 35.0% | |
| AACAGCTTGAATAGCTATGT+TGG | + | chr4.1:4495995-4496014 | None:intergenic | 35.0% | |
| AAGGATGAGAGAGTAAAACA+CGG | - | chr4.1:4496180-4496199 | MS.gene06080:intron | 35.0% | |
| AAGTTTGATGAAGACCTTGT+CGG | + | chr4.1:4495966-4495985 | None:intergenic | 35.0% | |
| AATTGTAGAGCTTGTATTCG+AGG | + | chr4.1:4496587-4496606 | None:intergenic | 35.0% | |
| ACTATTAAAGAGTCCCTCAT+TGG | + | chr4.1:4495528-4495547 | None:intergenic | 35.0% | |
| ATATTGGATACTTCGAACAC+AGG | - | chr4.1:4496358-4496377 | MS.gene06080:intron | 35.0% | |
| ATGGATTCACAAACAAACAC+GGG | + | chr4.1:4496317-4496336 | None:intergenic | 35.0% | |
| CACTACATCCCTTTACATTA+GGG | - | chr4.1:4495401-4495420 | MS.gene06080:CDS | 35.0% | |
| CCAAACATTTGAATCACCTA+CGG | + | chr4.1:4496034-4496053 | None:intergenic | 35.0% | |
| CCACTTATAAACACATGTTC+AGG | - | chr4.1:4495491-4495510 | MS.gene06080:CDS | 35.0% | |
| CCCATTATACTGTTTGATTC+AGG | - | chr4.1:4495620-4495639 | MS.gene06080:CDS | 35.0% | |
| CCCTGAATCAAACAGTATAA+TGG | + | chr4.1:4495624-4495643 | None:intergenic | 35.0% | |
| CCTGAACATGTGTTTATAAG+TGG | + | chr4.1:4495494-4495513 | None:intergenic | 35.0% | |
| CTAAGAGACCCTAATGTAAA+GGG | + | chr4.1:4495412-4495431 | None:intergenic | 35.0% | |
| CTGATTTCAAAGAAGCTCAT+GGG | - | chr4.1:4496532-4496551 | MS.gene06080:intron | 35.0% | |
| GAACATGTGTTTATAAGTGG+GGG | + | chr4.1:4495491-4495510 | None:intergenic | 35.0% | |
| GAATCAACATCATCTACAAG+TGG | + | chr4.1:4495790-4495809 | None:intergenic | 35.0% | |
| GATTCAAATGTTTGGTTAGC+TGG | - | chr4.1:4496039-4496058 | MS.gene06080:intron | 35.0% | |
| GGATCAATGATCAAATCCTT+TGG | + | chr4.1:4496270-4496289 | None:intergenic | 35.0% | |
| TCACTACATCCCTTTACATT+AGG | - | chr4.1:4495400-4495419 | MS.gene06080:CDS | 35.0% | |
| TCATCCTTAATCTTCTCAAG+TGG | + | chr4.1:4496168-4496187 | None:intergenic | 35.0% | |
| TCTAAGAGACCCTAATGTAA+AGG | + | chr4.1:4495413-4495432 | None:intergenic | 35.0% | |
| TCTGAACATATATGGTCAGA+TGG | + | chr4.1:4496336-4496355 | None:intergenic | 35.0% | |
| TCTGATTTCAAAGAAGCTCA+TGG | - | chr4.1:4496531-4496550 | MS.gene06080:intron | 35.0% | |
| TTAGCAACTCAAAACTCACT+TGG | - | chr4.1:4496420-4496439 | MS.gene06080:intron | 35.0% | |
| ! | GATATCCATTTTATCCGACA+AGG | - | chr4.1:4495949-4495968 | MS.gene06080:intron | 35.0% |
| ! | GATGGATTCACAAACAAACA+CGG | + | chr4.1:4496318-4496337 | None:intergenic | 35.0% |
| ! | TTTACATTCTAGAAAGGGAC+CGG | - | chr4.1:4495692-4495711 | MS.gene06080:CDS | 35.0% |
| !! | TCATTACATTGTGATGATGG+AGG | + | chr4.1:4495844-4495863 | None:intergenic | 35.0% |
| AAAATTGCCATTCTTGGCCA+TGG | + | chr4.1:4496106-4496125 | None:intergenic | 40.0% | |
| AGGAGAAAAATGGAGGACAT+TGG | - | chr4.1:4496378-4496397 | MS.gene06080:intron | 40.0% | |
| AGGATGAGAGAGTAAAACAC+GGG | - | chr4.1:4496181-4496200 | MS.gene06080:intron | 40.0% | |
| CATCCCTAACTAGATCAATG+CGG | + | chr4.1:4495321-4495340 | None:intergenic | 40.0% | |
| CATTGATCTAGTTAGGGATG+GGG | - | chr4.1:4495321-4495340 | MS.gene06080:CDS | 40.0% | |
| CCGTAGGTGATTCAAATGTT+TGG | - | chr4.1:4496031-4496050 | MS.gene06080:intron | 40.0% | |
| CTTCGAACACAGGAGAAAAA+TGG | - | chr4.1:4496368-4496387 | MS.gene06080:intron | 40.0% | |
| GAAGACCTTGTCGGATAAAA+TGG | + | chr4.1:4495957-4495976 | None:intergenic | 40.0% | |
| GAGGACAACCAATACTAACA+AGG | + | chr4.1:4495046-4495065 | None:intergenic | 40.0% | |
| GTCTCTTAGAAATCGTGGTT+GGG | - | chr4.1:4495423-4495442 | MS.gene06080:CDS | 40.0% | |
| TAAAGGGATGTAGTGAAGCT+TGG | + | chr4.1:4495396-4495415 | None:intergenic | 40.0% | |
| TCAAGTGGAGCAGATACAAA+TGG | + | chr4.1:4496153-4496172 | None:intergenic | 40.0% | |
| TGCTCCACTTGAGAAGATTA+AGG | - | chr4.1:4496161-4496180 | MS.gene06080:intron | 40.0% | |
| TTAACTGTCACAGAAGCTGA+AGG | + | chr4.1:4496498-4496517 | None:intergenic | 40.0% | |
| TTAGGGTCTCTTAGAAATCG+TGG | - | chr4.1:4495418-4495437 | MS.gene06080:CDS | 40.0% | |
| TTTGGTTAGAGTTCCTCGAA+AGG | + | chr4.1:4495899-4495918 | None:intergenic | 40.0% | |
| ! | CTTCTCTGCCTTGTTAGTAT+TGG | - | chr4.1:4495035-4495054 | MS.gene06080:CDS | 40.0% |
| ! | GCATTGATCTAGTTAGGGAT+GGG | - | chr4.1:4495320-4495339 | MS.gene06080:CDS | 40.0% |
| !! | GCTTCTTTGAAATCAGATGC+AGG | + | chr4.1:4496528-4496547 | None:intergenic | 40.0% |
| !!! | CTTGGTGGTGTGTTTGTTTT+TGG | + | chr4.1:4495378-4495397 | None:intergenic | 40.0% |
| AAGCTCATGGGATTCATCAG+TGG | - | chr4.1:4496544-4496563 | MS.gene06080:intron | 45.0% | |
| AGTGGAGCAGATACAAATGG+AGG | + | chr4.1:4496150-4496169 | None:intergenic | 45.0% | |
| ATTTACCGCTTTGTCTGCGT+GGG | - | chr4.1:4496290-4496309 | MS.gene06080:intron | 45.0% | |
| CGAAAGGCAATCACATAACG+TGG | + | chr4.1:4495883-4495902 | None:intergenic | 45.0% | |
| CGAACACAGGAGAAAAATGG+AGG | - | chr4.1:4496371-4496390 | MS.gene06080:intron | 45.0% | |
| CGTTATGTGATTGCCTTTCG+AGG | - | chr4.1:4495883-4495902 | MS.gene06080:intron | 45.0% | |
| GCAACCGACATTCGATGATA+TGG | + | chr4.1:4495652-4495671 | None:intergenic | 45.0% | |
| GCAACTCAAAACTCACTTGG+TGG | - | chr4.1:4496423-4496442 | MS.gene06080:intron | 45.0% | |
| GGTCTCTTAGAAATCGTGGT+TGG | - | chr4.1:4495422-4495441 | MS.gene06080:CDS | 45.0% | |
| GTCCCTCATTGGACAAAAGA+TGG | + | chr4.1:4495517-4495536 | None:intergenic | 45.0% | |
| GTGGACGAAGTAGCTGAAAA+TGG | + | chr4.1:4495771-4495790 | None:intergenic | 45.0% | |
| GTGGAGCAGATACAAATGGA+GGG | + | chr4.1:4496149-4496168 | None:intergenic | 45.0% | |
| TCACAGAAGCTGAAGGAATG+AGG | + | chr4.1:4496491-4496510 | None:intergenic | 45.0% | |
| TGCTAACCTTTCGATCACTC+CGG | + | chr4.1:4496406-4496425 | None:intergenic | 45.0% | |
| TGGAAAAATGTCCACCAAGG+TGG | + | chr4.1:4495751-4495770 | None:intergenic | 45.0% | |
| ! | AATGTCGGTTGCTGCTTGTT+TGG | - | chr4.1:4495660-4495679 | MS.gene06080:CDS | 45.0% |
| ! | AGGCCATCTTTTGTCCAATG+AGG | - | chr4.1:4495511-4495530 | MS.gene06080:CDS | 45.0% |
| ! | ATTCTTGGCCATGGTTTTCC+CGG | + | chr4.1:4496097-4496116 | None:intergenic | 45.0% |
| ! | CGCATTGATCTAGTTAGGGA+TGG | - | chr4.1:4495319-4495338 | MS.gene06080:CDS | 45.0% |
| ! | CTGCTTGGCTTTCATAGCTA+AGG | + | chr4.1:4496244-4496263 | None:intergenic | 45.0% |
| ! | GGCCATCTTTTGTCCAATGA+GGG | - | chr4.1:4495512-4495531 | MS.gene06080:CDS | 45.0% |
| ! | TCACTTGGTGGCCTATTGAT+GGG | - | chr4.1:4496435-4496454 | MS.gene06080:intron | 45.0% |
| !! | AGGGAAAGTTTTGACCTCTC+AGG | - | chr4.1:4494885-4494904 | MS.gene06080:CDS | 45.0% |
| !!! | TGGTTTTGTGGGGTTGTGTT+AGG | + | chr4.1:4495449-4495468 | None:intergenic | 45.0% |
| AAAATGGAGGACATTGGCGC+CGG | - | chr4.1:4496384-4496403 | MS.gene06080:intron | 50.0% | |
| AACCCCACAAAACCAGCTTG+TGG | - | chr4.1:4495454-4495473 | MS.gene06080:CDS | 50.0% | |
| ACACTCCCTAGGATCAGCAA+TGG | - | chr4.1:4496062-4496081 | MS.gene06080:intron | 50.0% | |
| ACCCCACAAAACCAGCTTGT+GGG | - | chr4.1:4495455-4495474 | MS.gene06080:CDS | 50.0% | |
| ACGCGAAACTGAGTGTGCTT+TGG | + | chr4.1:4495917-4495936 | None:intergenic | 50.0% | |
| AGGGATGTAGTGAAGCTTGG+TGG | + | chr4.1:4495393-4495412 | None:intergenic | 50.0% | |
| CAAAACACGGTAGCAACCGT+AGG | - | chr4.1:4496015-4496034 | MS.gene06080:intron | 50.0% | |
| CAAATCCTTTGGCTGCTGCT+TGG | + | chr4.1:4496259-4496278 | None:intergenic | 50.0% | |
| CAACGCCATTGCTGATCCTA+GGG | + | chr4.1:4496070-4496089 | None:intergenic | 50.0% | |
| CACGCAGACAAAGCGGTAAA+TGG | + | chr4.1:4496291-4496310 | None:intergenic | 50.0% | |
| CATTTACCGCTTTGTCTGCG+TGG | - | chr4.1:4496289-4496308 | MS.gene06080:intron | 50.0% | |
| CTCATGGGATTCATCAGTGG+TGG | - | chr4.1:4496547-4496566 | MS.gene06080:intron | 50.0% | |
| CTTGTATTCGAGGCGCAAGT+CGG | + | chr4.1:4496577-4496596 | None:intergenic | 50.0% | |
| GCTGAAGGAATGAGGTGCAA+TGG | + | chr4.1:4496483-4496502 | None:intergenic | 50.0% | |
| GGGAAAACCATGGCCAAGAA+TGG | - | chr4.1:4496096-4496115 | MS.gene06080:intron | 50.0% | |
| GTTGCTTACCGGGAAAACCA+TGG | - | chr4.1:4496086-4496105 | MS.gene06080:intron | 50.0% | |
| TCAAATGCAAGGGTCCTGAG+AGG | + | chr4.1:4494902-4494921 | None:intergenic | 50.0% | |
| TCAGCAATGGCGTTGCTTAC+CGG | - | chr4.1:4496075-4496094 | MS.gene06080:intron | 50.0% | |
| TCCCAAACGCACCCATCAAT+AGG | + | chr4.1:4496449-4496468 | None:intergenic | 50.0% | |
| TTGTATTCGAGGCGCAAGTC+GGG | + | chr4.1:4496576-4496595 | None:intergenic | 50.0% | |
| ! | AAACACGGGATTCGATTCGC+TGG | - | chr4.1:4496195-4496214 | MS.gene06080:intron | 50.0% |
| ! | AACCTTCACGCTTTTCCTGC+CGG | + | chr4.1:4495714-4495733 | None:intergenic | 50.0% |
| ! | ATTGATGGGTGCGTTTGGGA+AGG | - | chr4.1:4496449-4496468 | MS.gene06080:intron | 50.0% |
| ! | CGGCCGCATTGATCTAGTTA+GGG | - | chr4.1:4495315-4495334 | MS.gene06080:CDS | 50.0% |
| ! | CTCACTTGGTGGCCTATTGA+TGG | - | chr4.1:4496434-4496453 | MS.gene06080:intron | 50.0% |
| ! | GCCTATTGATGGGTGCGTTT+GGG | - | chr4.1:4496445-4496464 | MS.gene06080:intron | 50.0% |
| ! | GTTGCTGCTTGTTTGGTCCA+AGG | - | chr4.1:4495667-4495686 | MS.gene06080:CDS | 50.0% |
| ! | TCGGCCGCATTGATCTAGTT+AGG | - | chr4.1:4495314-4495333 | MS.gene06080:CDS | 50.0% |
| !! | TCAATGCGGCCGATTCGAAT+TGG | + | chr4.1:4495307-4495326 | None:intergenic | 50.0% |
| !!! | ACCCCACAAGCTGGTTTTGT+GGG | + | chr4.1:4495460-4495479 | None:intergenic | 50.0% |
| CAAAACCAGCTTGTGGGGTG+AGG | - | chr4.1:4495461-4495480 | MS.gene06080:CDS | 55.0% | |
| CAGCAATGGCGTTGCTTACC+GGG | - | chr4.1:4496076-4496095 | MS.gene06080:intron | 55.0% | |
| CCCCACAAAACCAGCTTGTG+GGG | - | chr4.1:4495456-4495475 | MS.gene06080:CDS | 55.0% | |
| GAAAGCCAAGCAGCAGCCAA+AGG | - | chr4.1:4496251-4496270 | MS.gene06080:intron | 55.0% | |
| GCAACGCCATTGCTGATCCT+AGG | + | chr4.1:4496071-4496090 | None:intergenic | 55.0% | |
| ! | CATTCTAGAAAGGGACCGGC+AGG | - | chr4.1:4495696-4495715 | MS.gene06080:CDS | 55.0% |
| ! | GGCCTATTGATGGGTGCGTT+TGG | - | chr4.1:4496444-4496463 | MS.gene06080:intron | 55.0% |
| ! | TGGTTAGCTGGACACTCCCT+AGG | - | chr4.1:4496051-4496070 | MS.gene06080:intron | 55.0% |
| !!! | CACCCCACAAGCTGGTTTTG+TGG | + | chr4.1:4495461-4495480 | None:intergenic | 55.0% |
| !!! | CCCCACAAGCTGGTTTTGTG+GGG | + | chr4.1:4495459-4495478 | None:intergenic | 55.0% |
| GCAATCCTCACCCCACAAGC+TGG | + | chr4.1:4495469-4495488 | None:intergenic | 60.0% | |
| GCTGGCAGCGTGATAACAGC+TGG | - | chr4.1:4496213-4496232 | MS.gene06080:intron | 60.0% | |
| ! | GACCGGCAGGAAAAGCGTGA+AGG | - | chr4.1:4495709-4495728 | MS.gene06080:CDS | 60.0% |
| ! | TTGGCGCCGGAGTGATCGAA+AGG | - | chr4.1:4496397-4496416 | MS.gene06080:intron | 60.0% |
| ATGCTCTCGCGCCACCTTGG+TGG | - | chr4.1:4495737-4495756 | MS.gene06080:CDS | 65.0% | |
| CAGATGCTCTCGCGCCACCT+TGG | - | chr4.1:4495734-4495753 | MS.gene06080:CDS | 65.0% | |
| CGGGACCCACGCAGACAAAG+CGG | + | chr4.1:4496298-4496317 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4494873 | 4496614 | 4494873 | ID=MS.gene06080 |
| chr4.1 | mRNA | 4494873 | 4496614 | 4494873 | ID=MS.gene06080.t1;Parent=MS.gene06080 |
| chr4.1 | exon | 4496553 | 4496614 | 4496553 | ID=MS.gene06080.t1.exon1;Parent=MS.gene06080.t1 |
| chr4.1 | CDS | 4496553 | 4496614 | 4496553 | ID=cds.MS.gene06080.t1;Parent=MS.gene06080.t1 |
| chr4.1 | exon | 4494873 | 4495845 | 4494873 | ID=MS.gene06080.t1.exon2;Parent=MS.gene06080.t1 |
| chr4.1 | CDS | 4494873 | 4495845 | 4494873 | ID=cds.MS.gene06080.t1;Parent=MS.gene06080.t1 |
| Gene Sequence |
| Protein sequence |
