Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069733.t1 | XP_003628404.1 | 93.2 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 4.00E-115 | 424.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069733.t1 | P49332 | 67.4 | 218 | 70 | 1 | 3 | 219 | 4 | 221 | 4.2e-81 | 302.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069733.t1 | G7LB15 | 93.2 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 2.9e-115 | 424.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059713 | MS.gene069733 | 0.809423 | 1.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069733.t1 | MTR_8g056940 | 93.151 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 3.92e-151 | 419 |
| MS.gene069733.t1 | MTR_2g070060 | 65.297 | 219 | 76 | 0 | 1 | 219 | 1 | 219 | 4.44e-105 | 302 |
| MS.gene069733.t1 | MTR_2g070070 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 4.09e-103 | 297 |
| MS.gene069733.t1 | MTR_2g070180 | 64.019 | 214 | 77 | 0 | 1 | 214 | 1 | 214 | 1.58e-99 | 288 |
| MS.gene069733.t1 | MTR_4g124130 | 62.727 | 220 | 81 | 1 | 1 | 219 | 1 | 220 | 6.79e-98 | 284 |
| MS.gene069733.t1 | MTR_2g070150 | 65.842 | 202 | 69 | 0 | 1 | 202 | 1 | 202 | 5.87e-97 | 281 |
| MS.gene069733.t1 | MTR_2g070110 | 62.557 | 219 | 81 | 1 | 1 | 219 | 1 | 218 | 1.14e-95 | 278 |
| MS.gene069733.t1 | MTR_2g070130 | 58.904 | 219 | 90 | 0 | 1 | 219 | 1 | 219 | 1.46e-95 | 278 |
| MS.gene069733.t1 | MTR_2g070140 | 63.547 | 203 | 74 | 0 | 17 | 219 | 1 | 203 | 1.66e-93 | 272 |
| MS.gene069733.t1 | MTR_2g070200 | 60.550 | 218 | 84 | 2 | 1 | 216 | 1 | 218 | 5.13e-92 | 269 |
| MS.gene069733.t1 | MTR_0186s0030 | 92.908 | 141 | 10 | 0 | 1 | 141 | 1 | 141 | 5.30e-92 | 266 |
| MS.gene069733.t1 | MTR_3g467420 | 55.349 | 215 | 96 | 0 | 5 | 219 | 10 | 224 | 8.36e-91 | 266 |
| MS.gene069733.t1 | MTR_3g467430 | 54.839 | 217 | 98 | 0 | 3 | 219 | 8 | 224 | 1.90e-90 | 265 |
| MS.gene069733.t1 | MTR_2g070210 | 57.919 | 221 | 91 | 1 | 1 | 219 | 1 | 221 | 2.93e-90 | 265 |
| MS.gene069733.t1 | MTR_2g070120 | 55.981 | 209 | 92 | 0 | 1 | 209 | 1 | 209 | 6.80e-82 | 243 |
| MS.gene069733.t1 | MTR_5g076900 | 51.402 | 214 | 102 | 2 | 2 | 214 | 4 | 216 | 5.23e-72 | 218 |
| MS.gene069733.t1 | MTR_4g059730 | 40.376 | 213 | 122 | 3 | 1 | 209 | 1 | 212 | 4.25e-44 | 147 |
| MS.gene069733.t1 | MTR_5g037380 | 40.826 | 218 | 120 | 4 | 2 | 210 | 3 | 220 | 5.56e-44 | 147 |
| MS.gene069733.t1 | MTR_1g090060 | 39.901 | 203 | 117 | 3 | 11 | 209 | 10 | 211 | 8.97e-44 | 146 |
| MS.gene069733.t1 | MTR_4g019780 | 37.799 | 209 | 125 | 4 | 3 | 208 | 7 | 213 | 6.27e-43 | 144 |
| MS.gene069733.t1 | MTR_5g040430 | 35.610 | 205 | 125 | 2 | 2 | 199 | 5 | 209 | 8.66e-43 | 144 |
| MS.gene069733.t1 | MTR_3g099757 | 48.171 | 164 | 83 | 2 | 1 | 163 | 1 | 163 | 7.73e-42 | 141 |
| MS.gene069733.t1 | MTR_7g065750 | 39.726 | 219 | 123 | 6 | 3 | 217 | 6 | 219 | 1.19e-41 | 141 |
| MS.gene069733.t1 | MTR_7g065660 | 38.756 | 209 | 123 | 4 | 3 | 208 | 6 | 212 | 2.98e-41 | 140 |
| MS.gene069733.t1 | MTR_7g065740 | 40.476 | 210 | 119 | 4 | 3 | 208 | 6 | 213 | 6.44e-41 | 139 |
| MS.gene069733.t1 | MTR_7g065720 | 38.208 | 212 | 121 | 5 | 3 | 208 | 6 | 213 | 6.69e-41 | 139 |
| MS.gene069733.t1 | MTR_8g087425 | 35.321 | 218 | 135 | 3 | 2 | 217 | 3 | 216 | 2.42e-40 | 137 |
| MS.gene069733.t1 | MTR_4g019790 | 38.942 | 208 | 122 | 4 | 4 | 208 | 7 | 212 | 1.79e-39 | 135 |
| MS.gene069733.t1 | MTR_7g065630 | 43.548 | 186 | 100 | 5 | 3 | 187 | 24 | 205 | 2.71e-39 | 135 |
| MS.gene069733.t1 | MTR_1g090100 | 41.089 | 202 | 114 | 3 | 11 | 208 | 9 | 209 | 2.93e-39 | 135 |
| MS.gene069733.t1 | MTR_1g090070 | 39.070 | 215 | 117 | 5 | 4 | 209 | 9 | 218 | 7.72e-39 | 134 |
| MS.gene069733.t1 | MTR_6g080440 | 40.777 | 206 | 112 | 6 | 19 | 216 | 16 | 219 | 1.97e-38 | 132 |
| MS.gene069733.t1 | MTR_8g061950 | 40.796 | 201 | 104 | 5 | 7 | 195 | 8 | 205 | 2.89e-38 | 132 |
| MS.gene069733.t1 | MTR_1g090090 | 40.099 | 202 | 116 | 4 | 11 | 208 | 10 | 210 | 3.22e-37 | 129 |
| MS.gene069733.t1 | MTR_7g065710 | 47.500 | 160 | 79 | 4 | 1 | 158 | 1 | 157 | 4.00e-37 | 129 |
| MS.gene069733.t1 | MTR_7g065270 | 37.981 | 208 | 121 | 5 | 13 | 217 | 16 | 218 | 6.59e-37 | 129 |
| MS.gene069733.t1 | MTR_7g065265 | 38.462 | 208 | 120 | 5 | 13 | 217 | 16 | 218 | 9.20e-37 | 128 |
| MS.gene069733.t1 | MTR_8g087410 | 43.871 | 155 | 86 | 1 | 3 | 157 | 5 | 158 | 2.82e-36 | 127 |
| MS.gene069733.t1 | MTR_7g065230 | 39.904 | 208 | 112 | 7 | 13 | 217 | 16 | 213 | 4.55e-36 | 126 |
| MS.gene069733.t1 | MTR_7g065590 | 37.895 | 190 | 113 | 4 | 13 | 199 | 16 | 203 | 1.58e-35 | 125 |
| MS.gene069733.t1 | MTR_1g090150 | 43.671 | 158 | 83 | 4 | 3 | 157 | 2 | 156 | 4.06e-35 | 124 |
| MS.gene069733.t1 | MTR_7g065680 | 45.223 | 157 | 83 | 3 | 3 | 158 | 6 | 160 | 4.92e-35 | 124 |
| MS.gene069733.t1 | MTR_7g065290 | 37.019 | 208 | 123 | 5 | 13 | 217 | 16 | 218 | 1.38e-34 | 123 |
| MS.gene069733.t1 | MTR_1g115195 | 36.634 | 202 | 118 | 4 | 7 | 201 | 6 | 204 | 1.25e-33 | 120 |
| MS.gene069733.t1 | MTR_7g065600 | 39.362 | 188 | 109 | 4 | 3 | 187 | 6 | 191 | 3.15e-33 | 119 |
| MS.gene069733.t1 | MTR_7g065700 | 45.806 | 155 | 81 | 3 | 3 | 156 | 6 | 158 | 3.31e-33 | 119 |
| MS.gene069733.t1 | MTR_7g065640 | 44.203 | 138 | 75 | 2 | 3 | 139 | 6 | 142 | 2.27e-32 | 117 |
| MS.gene069733.t1 | MTR_7g065260 | 38.830 | 188 | 110 | 4 | 3 | 187 | 13 | 198 | 1.29e-31 | 115 |
| MS.gene069733.t1 | MTR_2g072120 | 66.667 | 72 | 24 | 0 | 47 | 118 | 1 | 72 | 4.72e-30 | 106 |
| MS.gene069733.t1 | MTR_4g043640 | 69.355 | 62 | 13 | 2 | 131 | 190 | 29 | 86 | 9.36e-23 | 88.2 |
| MS.gene069733.t1 | MTR_5g037390 | 45.205 | 73 | 38 | 1 | 28 | 98 | 11 | 83 | 2.54e-12 | 61.2 |
| MS.gene069733.t1 | MTR_4g134380 | 29.825 | 171 | 103 | 5 | 3 | 159 | 14 | 181 | 1.64e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069733.t1 | AT1G78380 | 63.426 | 216 | 79 | 0 | 1 | 216 | 1 | 216 | 2.15e-97 | 283 |
| MS.gene069733.t1 | AT1G78370 | 60.000 | 215 | 86 | 0 | 1 | 215 | 1 | 215 | 3.19e-96 | 280 |
| MS.gene069733.t1 | AT1G17170 | 61.187 | 219 | 84 | 1 | 1 | 219 | 1 | 218 | 9.45e-96 | 278 |
| MS.gene069733.t1 | AT1G17180 | 59.817 | 219 | 88 | 0 | 1 | 219 | 1 | 219 | 1.59e-94 | 275 |
| MS.gene069733.t1 | AT1G78340 | 60.748 | 214 | 84 | 0 | 1 | 214 | 1 | 214 | 4.16e-94 | 274 |
| MS.gene069733.t1 | AT1G78360 | 60.465 | 215 | 84 | 1 | 1 | 214 | 1 | 215 | 1.00e-91 | 268 |
| MS.gene069733.t1 | AT1G78320 | 59.346 | 214 | 87 | 0 | 1 | 214 | 1 | 214 | 8.92e-89 | 261 |
| MS.gene069733.t1 | AT1G17190 | 55.607 | 214 | 95 | 0 | 3 | 216 | 4 | 217 | 1.16e-85 | 253 |
| MS.gene069733.t1 | AT1G53680 | 53.302 | 212 | 97 | 2 | 5 | 214 | 8 | 219 | 2.82e-81 | 242 |
| MS.gene069733.t1 | AT3G43800 | 51.643 | 213 | 99 | 3 | 3 | 211 | 4 | 216 | 1.17e-71 | 218 |
| MS.gene069733.t1 | AT1G78320 | 50.467 | 214 | 79 | 1 | 1 | 214 | 1 | 187 | 5.43e-68 | 207 |
| MS.gene069733.t1 | AT3G09270 | 47.872 | 188 | 93 | 4 | 3 | 186 | 5 | 191 | 1.52e-46 | 154 |
| MS.gene069733.t1 | AT2G29420 | 38.073 | 218 | 129 | 3 | 2 | 217 | 7 | 220 | 8.66e-46 | 152 |
| MS.gene069733.t1 | AT1G10370 | 39.352 | 216 | 123 | 4 | 2 | 209 | 3 | 218 | 3.13e-44 | 148 |
| MS.gene069733.t1 | AT1G10360 | 39.352 | 216 | 123 | 4 | 2 | 209 | 3 | 218 | 3.63e-43 | 145 |
| MS.gene069733.t1 | AT1G74590 | 35.000 | 220 | 131 | 4 | 5 | 215 | 8 | 224 | 2.64e-42 | 143 |
| MS.gene069733.t1 | AT1G59670 | 41.071 | 224 | 123 | 5 | 3 | 217 | 5 | 228 | 8.13e-42 | 142 |
| MS.gene069733.t1 | AT2G29460 | 39.908 | 218 | 125 | 4 | 3 | 216 | 6 | 221 | 1.28e-41 | 141 |
| MS.gene069733.t1 | AT2G29450 | 49.383 | 162 | 77 | 3 | 3 | 160 | 5 | 165 | 4.20e-41 | 139 |
| MS.gene069733.t1 | AT2G29440 | 47.205 | 161 | 81 | 2 | 3 | 160 | 5 | 164 | 8.41e-41 | 139 |
| MS.gene069733.t1 | AT1G59700 | 40.278 | 216 | 120 | 5 | 3 | 209 | 5 | 220 | 8.66e-41 | 139 |
| MS.gene069733.t1 | AT2G29490 | 45.342 | 161 | 84 | 2 | 3 | 160 | 6 | 165 | 1.39e-40 | 138 |
| MS.gene069733.t1 | AT2G29480 | 44.099 | 161 | 86 | 2 | 3 | 160 | 6 | 165 | 4.19e-40 | 137 |
| MS.gene069733.t1 | AT2G29470 | 37.037 | 216 | 129 | 5 | 7 | 217 | 10 | 223 | 9.60e-40 | 136 |
| MS.gene069733.t1 | AT1G27140 | 38.967 | 213 | 117 | 5 | 15 | 217 | 17 | 226 | 5.87e-39 | 135 |
| MS.gene069733.t1 | AT5G62480 | 37.363 | 182 | 100 | 2 | 5 | 175 | 9 | 187 | 3.60e-38 | 132 |
| MS.gene069733.t1 | AT1G27130 | 37.264 | 212 | 124 | 4 | 7 | 209 | 9 | 220 | 5.73e-38 | 132 |
| MS.gene069733.t1 | AT1G69920 | 36.916 | 214 | 122 | 5 | 7 | 209 | 37 | 248 | 4.29e-37 | 130 |
| MS.gene069733.t1 | AT1G69930 | 34.762 | 210 | 130 | 3 | 7 | 209 | 15 | 224 | 7.74e-35 | 124 |
| MS.gene069733.t1 | AT5G62480 | 29.121 | 182 | 88 | 3 | 5 | 175 | 9 | 160 | 7.44e-21 | 87.0 |
| MS.gene069733.t1 | AT5G62480 | 29.121 | 182 | 89 | 3 | 5 | 175 | 9 | 161 | 9.66e-21 | 86.7 |
Find 46 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAATGGCTTAGTATATT+TGG | 0.159418 | 8.4:+53748714 | MS.gene069733:CDS |
| AGAAAGCTCAAGCAAGATTT+TGG | 0.160142 | 8.4:+53748961 | MS.gene069733:CDS |
| ATGATGATGGATTCACAAAT+TGG | 0.232208 | 8.4:-53748876 | None:intergenic |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8.4:+53748747 | MS.gene069733:CDS |
| CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8.4:+53749500 | MS.gene069733:CDS |
| GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 8.4:+53749463 | MS.gene069733:CDS |
| ACTGGAATCTTCTTGTGAAT+TGG | 0.280000 | 8.4:-53748834 | None:intergenic |
| TTTCTCATCAGCAACAGATT+TGG | 0.313491 | 8.4:-53749672 | None:intergenic |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8.4:-53748812 | None:intergenic |
| GTGATGTTGGAGGAAGGATA+TGG | 0.346197 | 8.4:+53749405 | MS.gene069733:CDS |
| CTTGCTTGAGCTTTCTCATA+AGG | 0.355050 | 8.4:-53748954 | None:intergenic |
| AAAGAGAGAAAAGGTTGAAT+TGG | 0.382179 | 8.4:+53749433 | MS.gene069733:CDS |
| TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | 8.4:-53748852 | None:intergenic |
| GATTCCAGTTCTTATCCATA+AGG | 0.427078 | 8.4:+53748848 | MS.gene069733:CDS |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8.4:+53748901 | MS.gene069733:CDS |
| ATGAATTTGTTGTTAACTAT+AGG | 0.433226 | 8.4:+53749702 | MS.gene069733:CDS |
| AATGTGTCACCACCAAAATA+AGG | 0.439985 | 8.4:-53749512 | None:intergenic |
| TGATGAGGTTTGGAAGGATA+AGG | 0.440755 | 8.4:+53748911 | MS.gene069733:CDS |
| GTAAAGAAGGAGTTGATTGA+AGG | 0.450966 | 8.4:+53749455 | MS.gene069733:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8.4:-53749559 | None:intergenic |
| ATTCCAGTTCTTATCCATAA+GGG | 0.462545 | 8.4:+53748849 | MS.gene069733:CDS |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8.4:-53749560 | None:intergenic |
| AGTTGATATTACTTGATGAA+TGG | 0.465432 | 8.4:+53748700 | MS.gene069733:CDS |
| AAAGGTTGAATTGGTAAAGA+AGG | 0.468481 | 8.4:+53749442 | MS.gene069733:CDS |
| AAAATGCAGGTTGGTGATGT+TGG | 0.481244 | 8.4:+53749392 | MS.gene069733:intron |
| TGATGTTGGAGGAAGGATAT+GGG | 0.485671 | 8.4:+53749406 | MS.gene069733:CDS |
| AATATACTCAACAATGATGA+TGG | 0.489877 | 8.4:-53748889 | None:intergenic |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8.4:+53749482 | MS.gene069733:CDS |
| CTATAGGAAGAGGTTAGAGT+TGG | 0.508025 | 8.4:+53749718 | MS.gene069733:CDS |
| AGGGATAAAGTATGAGTACA+AGG | 0.524364 | 8.4:+53748767 | MS.gene069733:CDS |
| AGCTTTCTCATAAGGATCTG+AGG | 0.541397 | 8.4:-53748946 | None:intergenic |
| TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | 8.4:+53749708 | MS.gene069733:CDS |
| ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8.4:+53749592 | MS.gene069733:CDS |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8.4:+53748905 | MS.gene069733:CDS |
| GGCAAAGAGATGCAAGCAAA+GGG | 0.548622 | 8.4:+53749640 | MS.gene069733:CDS |
| GTTGGAGGAAGGATATGGGC+TGG | 0.551186 | 8.4:+53749410 | MS.gene069733:CDS |
| GTATATTTGGTATGAGAGCA+AGG | 0.566575 | 8.4:+53748727 | MS.gene069733:CDS |
| ATGGGCTGGAAAGAGAGAAA+AGG | 0.570427 | 8.4:+53749424 | MS.gene069733:CDS |
| GCTTTCTCATAAGGATCTGA+GGG | 0.584199 | 8.4:-53748945 | None:intergenic |
| CATTGTTGAGTATATTGATG+AGG | 0.596226 | 8.4:+53748896 | MS.gene069733:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.604533 | 8.4:+53749395 | MS.gene069733:intron |
| GTTGTCTTTGACAATGGCAG+AGG | 0.605201 | 8.4:+53748677 | None:intergenic |
| TATGAGAGCAAGGATAGCAT+TGG | 0.605598 | 8.4:+53748737 | MS.gene069733:CDS |
| GGGCAAAGAGATGCAAGCAA+AGG | 0.618800 | 8.4:+53749639 | MS.gene069733:CDS |
| TGTCACCACCAAAATAAGGT+TGG | 0.621870 | 8.4:-53749508 | None:intergenic |
| AGGTTGGTGATGTTGGAGGA+AGG | 0.655636 | 8.4:+53749399 | MS.gene069733:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTAAAAAACATGA+TGG | + | chr8.4:53749122-53749141 | MS.gene069733:intron | 10.0% |
| !! | TTAATATGTTAAAAAAATGC+AGG | + | chr8.4:53749379-53749398 | MS.gene069733:intron | 15.0% |
| !! | AAATATGTTAAACCATTGAA+TGG | - | chr8.4:53749042-53749061 | None:intergenic | 20.0% |
| !! | AATATGTTAAACCATTGAAT+GGG | - | chr8.4:53749041-53749060 | None:intergenic | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | - | chr8.4:53749562-53749581 | None:intergenic | 20.0% |
| !!! | ATGAATTTGTTGTTAACTAT+AGG | + | chr8.4:53749702-53749721 | MS.gene069733:CDS | 20.0% |
| ! | AATATACTCAACAATGATGA+TGG | - | chr8.4:53748892-53748911 | None:intergenic | 25.0% |
| ! | ACATTCTTCATATTTCGTAA+TGG | + | chr8.4:53749266-53749285 | MS.gene069733:intron | 25.0% |
| ! | GATCCATATTAATAAAGACT+AGG | + | chr8.4:53749314-53749333 | MS.gene069733:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | - | chr8.4:53749563-53749582 | None:intergenic | 25.0% |
| ! | TAGAGAAGACAATAAATAGA+AGG | - | chr8.4:53749151-53749170 | None:intergenic | 25.0% |
| ! | TATGTTAAAAAAATGCAGGT+TGG | + | chr8.4:53749383-53749402 | MS.gene069733:intron | 25.0% |
| ! | TTGTCTTCTCTAATATTCAA+TGG | + | chr8.4:53749159-53749178 | MS.gene069733:intron | 25.0% |
| !! | AGTTGATATTACTTGATGAA+TGG | + | chr8.4:53748700-53748719 | MS.gene069733:CDS | 25.0% |
| !! | CAACCTAGTCTTTATTAATA+TGG | - | chr8.4:53749320-53749339 | None:intergenic | 25.0% |
| !!! | GTATTGTTTTTGCTTTTGAA+TGG | + | chr8.4:53749087-53749106 | MS.gene069733:intron | 25.0% |
| AAAGAGAGAAAAGGTTGAAT+TGG | + | chr8.4:53749433-53749452 | MS.gene069733:CDS | 30.0% | |
| AAAGGTTGAATTGGTAAAGA+AGG | + | chr8.4:53749442-53749461 | MS.gene069733:CDS | 30.0% | |
| AGTGTGAAAAACTGATTGTT+TGG | + | chr8.4:53749618-53749637 | MS.gene069733:CDS | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | + | chr8.4:53749592-53749611 | MS.gene069733:CDS | 30.0% | |
| ATTCCAGTTCTTATCCATAA+GGG | + | chr8.4:53748849-53748868 | MS.gene069733:CDS | 30.0% | |
| CATTGTTGAGTATATTGATG+AGG | + | chr8.4:53748896-53748915 | MS.gene069733:CDS | 30.0% | |
| CTTCTCTAATATTCAATGGA+TGG | + | chr8.4:53749163-53749182 | MS.gene069733:intron | 30.0% | |
| GATGAATGGCTTAGTATATT+TGG | + | chr8.4:53748714-53748733 | MS.gene069733:CDS | 30.0% | |
| GTGTGAAAAACTGATTGTTT+GGG | + | chr8.4:53749619-53749638 | MS.gene069733:CDS | 30.0% | |
| TTGAGTATATTGATGAGGTT+TGG | + | chr8.4:53748901-53748920 | MS.gene069733:CDS | 30.0% | |
| ! | TCTTCATATTTCGTAATGGA+TGG | + | chr8.4:53749270-53749289 | MS.gene069733:intron | 30.0% |
| ! | TTGTTGTTAACTATAGGAAG+AGG | + | chr8.4:53749708-53749727 | MS.gene069733:CDS | 30.0% |
| !! | ATGATGATGGATTCACAAAT+TGG | - | chr8.4:53748879-53748898 | None:intergenic | 30.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | - | chr8.4:53748815-53748834 | None:intergenic | 30.0% |
| AAGGAATTAGAGAATGTGCT+TGG | + | chr8.4:53749482-53749501 | MS.gene069733:CDS | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | - | chr8.4:53749515-53749534 | None:intergenic | 35.0% | |
| ACTGGAATCTTCTTGTGAAT+TGG | - | chr8.4:53748837-53748856 | None:intergenic | 35.0% | |
| AGGGATAAAGTATGAGTACA+AGG | + | chr8.4:53748767-53748786 | MS.gene069733:CDS | 35.0% | |
| ATAGTCATATCTCACAAGGA+AGG | - | chr8.4:53749241-53749260 | None:intergenic | 35.0% | |
| GAATGGGACACAAAAAACTT+TGG | - | chr8.4:53749025-53749044 | None:intergenic | 35.0% | |
| GATTCCAGTTCTTATCCATA+AGG | + | chr8.4:53748848-53748867 | MS.gene069733:CDS | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | + | chr8.4:53748905-53748924 | MS.gene069733:CDS | 35.0% | |
| GTATATTTGGTATGAGAGCA+AGG | + | chr8.4:53748727-53748746 | MS.gene069733:CDS | 35.0% | |
| TCCTATAGTCATATCTCACA+AGG | - | chr8.4:53749245-53749264 | None:intergenic | 35.0% | |
| TCCTTGTGAGATATGACTAT+AGG | + | chr8.4:53749241-53749260 | MS.gene069733:intron | 35.0% | |
| TTTCCCTTATGGATAAGAAC+TGG | - | chr8.4:53748855-53748874 | None:intergenic | 35.0% | |
| TTTCTCATCAGCAACAGATT+TGG | - | chr8.4:53749675-53749694 | None:intergenic | 35.0% | |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | + | chr8.4:53748961-53748980 | MS.gene069733:CDS | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | + | chr8.4:53749552-53749571 | MS.gene069733:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | + | chr8.4:53748962-53748981 | MS.gene069733:CDS | 35.0% |
| ! | GTAAAGAAGGAGTTGATTGA+AGG | + | chr8.4:53749455-53749474 | MS.gene069733:CDS | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | + | chr8.4:53749516-53749535 | MS.gene069733:CDS | 35.0% |
| !!! | CACAAATTGGTTTTCCCTTA+TGG | - | chr8.4:53748866-53748885 | None:intergenic | 35.0% |
| !!! | GTTTTTTGTGTCCCATTCAA+TGG | + | chr8.4:53749027-53749046 | MS.gene069733:intron | 35.0% |
| !!! | TATTTTGGTGGTGACACATT+TGG | + | chr8.4:53749515-53749534 | MS.gene069733:CDS | 35.0% |
| AGCTTTCTCATAAGGATCTG+AGG | - | chr8.4:53748949-53748968 | None:intergenic | 40.0% | |
| CATATCTCACAAGGAAGGAA+AGG | - | chr8.4:53749236-53749255 | None:intergenic | 40.0% | |
| CTATAGGAAGAGGTTAGAGT+TGG | + | chr8.4:53749718-53749737 | MS.gene069733:CDS | 40.0% | |
| CTTGCTTGAGCTTTCTCATA+AGG | - | chr8.4:53748957-53748976 | None:intergenic | 40.0% | |
| GCTTTCTCATAAGGATCTGA+GGG | - | chr8.4:53748948-53748967 | None:intergenic | 40.0% | |
| TATGAGAGCAAGGATAGCAT+TGG | + | chr8.4:53748737-53748756 | MS.gene069733:CDS | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | + | chr8.4:53748911-53748930 | MS.gene069733:CDS | 40.0% | |
| TGATGTTGGAGGAAGGATAT+GGG | + | chr8.4:53749406-53749425 | MS.gene069733:CDS | 40.0% | |
| TGTCACCACCAAAATAAGGT+TGG | - | chr8.4:53749511-53749530 | None:intergenic | 40.0% | |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | + | chr8.4:53749463-53749482 | MS.gene069733:CDS | 40.0% |
| !! | AAAATGCAGGTTGGTGATGT+TGG | + | chr8.4:53749392-53749411 | MS.gene069733:intron | 40.0% |
| !! | AGGATAGCATTGGCTGAAAA+AGG | + | chr8.4:53748747-53748766 | MS.gene069733:CDS | 40.0% |
| !! | CTTGGAGACCAACCTTATTT+TGG | + | chr8.4:53749500-53749519 | MS.gene069733:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | + | chr8.4:53748748-53748767 | MS.gene069733:CDS | 40.0% |
| !! | GGCTGATTTTGTCAACAAGA+AGG | + | chr8.4:53748983-53749002 | MS.gene069733:CDS | 40.0% |
| GGCAAAGAGATGCAAGCAAA+GGG | + | chr8.4:53749640-53749659 | MS.gene069733:CDS | 45.0% | |
| GTGATGTTGGAGGAAGGATA+TGG | + | chr8.4:53749405-53749424 | MS.gene069733:CDS | 45.0% | |
| !! | ATGGGCTGGAAAGAGAGAAA+AGG | + | chr8.4:53749424-53749443 | MS.gene069733:CDS | 45.0% |
| !!! | GGAGACCAACCTTATTTTGG+TGG | + | chr8.4:53749503-53749522 | MS.gene069733:CDS | 45.0% |
| GGGCAAAGAGATGCAAGCAA+AGG | + | chr8.4:53749639-53749658 | MS.gene069733:CDS | 50.0% | |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | + | chr8.4:53749399-53749418 | MS.gene069733:intron | 50.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | + | chr8.4:53749395-53749414 | MS.gene069733:intron | 50.0% |
| GTTGGAGGAAGGATATGGGC+TGG | + | chr8.4:53749410-53749429 | MS.gene069733:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 53748690 | 53749745 | 53748690 | ID=MS.gene069733 |
| chr8.4 | mRNA | 53748690 | 53749745 | 53748690 | ID=MS.gene069733.t1;Parent=MS.gene069733 |
| chr8.4 | exon | 53748690 | 53749004 | 53748690 | ID=MS.gene069733.t1.exon1;Parent=MS.gene069733.t1 |
| chr8.4 | CDS | 53748690 | 53749004 | 53748690 | ID=cds.MS.gene069733.t1;Parent=MS.gene069733.t1 |
| chr8.4 | exon | 53749401 | 53749745 | 53749401 | ID=MS.gene069733.t1.exon2;Parent=MS.gene069733.t1 |
| chr8.4 | CDS | 53749401 | 53749745 | 53749401 | ID=cds.MS.gene069733.t1;Parent=MS.gene069733.t1 |
| Gene Sequence |
| Protein sequence |
