AlfalfaGEDB | MS.gene06987

M. sativa cultivar XinJiangDaYe / MS.gene06987

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06987.t1	XP_003625923.1	97.7	309	1	3	1	308	1	304	1.30E-159	572.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06987.t1	Q8LEA8	46.3	337	145	7	1	307	5	335	3.8e-80	299.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06987.t1	G7KRX0	97.7	309	1	3	1	308	1	304	9.2e-160	572.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05316	MS.gene06987	0.806557	7.76E-50	-1.69E-46
MS.gene057668	MS.gene06987	0.828311	9.65E-55	-1.69E-46
MS.gene059807	MS.gene06987	0.835897	1.28E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06987.t1	MTR_7g108820	96.764	309	4	3	1	308	1	304	0.0	615
MS.gene06987.t1	MTR_8g058520	96.764	309	4	3	1	308	1	304	0.0	615

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06987.t1	AT4G02440	46.884	337	143	6	1	307	5	335	4.21e-105	310

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Find 56 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACCCTTCTGTTGTCC+TGG	0.461163	7.3:+6300972	MS.gene06987:CDS
AAAGACGAGCCCAATCACGA+GGG	0.734594	7.3:-6300833	None:intergenic
AACGAGGAAGAGATTAGAAC+TGG	0.503126	7.3:+6301233	MS.gene06987:CDS
AAGAATGATCAAGCGTACAT+AGG	0.570141	7.3:-6301686	None:intergenic
AAGAGAATACCAGCATGAAG+AGG	0.613643	7.3:-6300996	None:intergenic
AAGAGGACCAGGACAACAGA+AGG	0.566286	7.3:-6300979	None:intergenic
ACAACAAGAACAGACCAACG+AGG	0.731842	7.3:+6301217	MS.gene06987:CDS
ACCAGAAGCTAAGAAGAGAA+AGG	0.540167	7.3:+6301271	MS.gene06987:CDS
ACCTTTCTCTTCTTAGCTTC+TGG	0.278200	7.3:-6301272	None:intergenic
AGAGGACCAGGACAACAGAA+GGG	0.650940	7.3:-6300978	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAAGAAGAGAAAGGTTAAT+GGG	+	chr7.3:6301279-6301298	MS.gene06987:CDS	30.0%
GAAGAACATTCATTTGTTTG+AGG	-	chr7.3:6301116-6301135	None:intergenic	30.0%
GTTTATGAAGAGAAAGATCT+TGG	-	chr7.3:6300956-6300975	None:intergenic	30.0%
TAATCGGAAGAAGATTGATT+TGG	+	chr7.3:6301514-6301533	MS.gene06987:CDS	30.0%
AGGGCTTATGTTTGTGATAA+TGG	+	chr7.3:6301635-6301654	MS.gene06987:CDS	35.0%
ATTTCAAGAAGACACGTGTT+TGG	+	chr7.3:6301471-6301490	MS.gene06987:CDS	35.0%
CACATTTAGCTACAGGAAAA+TGG	+	chr7.3:6301312-6301331	MS.gene06987:CDS	35.0%
GAACATTCATTTGTTTGAGG+TGG	-	chr7.3:6301113-6301132	None:intergenic	35.0%
GAAGAAAGAAGAAGTTCAGA+AGG	-	chr7.3:6300930-6300949	None:intergenic	35.0%
GCTAAGAAGAGAAAGGTTAA+TGG	+	chr7.3:6301278-6301297	MS.gene06987:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	6300774	6301700	6300774	ID=MS.gene06987
chr7.3	mRNA	6300774	6301700	6300774	ID=MS.gene06987.t1;Parent=MS.gene06987
chr7.3	exon	6300774	6301700	6300774	ID=MS.gene06987.t1.exon1;Parent=MS.gene06987.t1
chr7.3	CDS	6300774	6301700	6300774	ID=cds.MS.gene06987.t1;Parent=MS.gene06987.t1

Gene Sequence

>MS.gene06987

ATGTTATCAGAATTAACAGATGATATAATTCTGAAGATTTTATGGAAGGTTGAAGAAGACCCTCGTGATTGGGCTCGTCTTTCTTGTGTCTCCACAAAACTCAATTCTCTCATCCATGATTTCTGTTGGAAGAACAAATCTTCTATCATAATTCCTTCTGAACTTCTTCTTTCTTCTTCCCAAGATCTTTCTCTTCATAAACTACCCTTCTGTTGTCCTGGTCCTCTTCATGCTGGTATTCTCTTCAACACCGCTGATTTCCCAGATGAACAACAACACCAACAACCTATTACATCATCATCAACAACAACAACAACAACACCTTCATCATCTCTTCCACCTCAAACAAATGAATGTTCTTCTTATTGGTCACTTTATGATGATCTTTATCATGATACACTCTACGCAGATTCTGAAGCACATCACCTTCAACAGGGACAAGAACAACAAGAACAGACCAACGAGGAAGAGATTAGAACTGGTGTTGTTGATGTTCCACCAGAAGCTAAGAAGAGAAAGGTTAATGGGTCATTGAGTTCACATTTAGCTACAGGAAAATGGACTCTTAGTAGAGAACAAGGAAGTAAGTTACTAGCAAGACAATTTCGTGATGATTGTTTATACGTATGTGATTGGCCAGGTTGTGTTCATTTGGAAGAGAAGAGAAAGTATAGACTTTTTCGAGGTGTTTTTATGAATTTCAAGAAGACACGTGTTTGGAAGACTGTGAATGATATTAGTAATCGGAAGAAGATTGATTTGGCTTGTGCCTTTTGTTCTTGTAATCATACTTGGGATCTTCACTCTGCTTTTTGTTTGAGGAGAGGATTTGGTTATCATGATGATGGTGAACCTGTTGTTAGGGCTTATGTTTGTGATAATGGTCATGTTTCTGGTGCTTGGACTGATATGCCTATGTACGCTTGA

Protein sequence

>MS.gene06987.t1

MLSELTDDIILKILWKVEEDPRDWARLSCVSTKLNSLIHDFCWKNKSSIIIPSELLLSSSQDLSLHKLPFCCPGPLHAGILFNTADFPDEQQHQQPITSSSTTTTTTPSSSLPPQTNECSSYWSLYDDLYHDTLYADSEAHHLQQGQEQQEQTNEEEIRTGVVDVPPEAKKRKVNGSLSSHLATGKWTLSREQGSKLLARQFRDDCLYVCDWPGCVHLEEKRKYRLFRGVFMNFKKTRVWKTVNDISNRKKIDLACAFCSCNHTWDLHSAFCLRRGFGYHDDGEPVVRAYVCDNGHVSGAWTDMPMYA