Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070007.t1 | XP_013462297.1 | 96.7 | 364 | 11 | 1 | 15 | 377 | 3 | 366 | 1.60E-209 | 738.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070007.t1 | Q8LAH7 | 68.9 | 366 | 109 | 1 | 15 | 375 | 5 | 370 | 3.0e-151 | 536.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070007.t1 | A0A072V3D1 | 96.7 | 364 | 11 | 1 | 15 | 377 | 3 | 366 | 1.2e-209 | 738.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050710 | MS.gene070007 | 0.807748 | 4.34E-50 | -1.69E-46 |
| MS.gene050809 | MS.gene070007 | 0.817671 | 2.92E-52 | -1.69E-46 |
| MS.gene05926 | MS.gene070007 | 0.802197 | 6.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070007.t1 | MTR_3g115600 | 96.703 | 364 | 11 | 1 | 15 | 377 | 3 | 366 | 0.0 | 737 |
| MS.gene070007.t1 | MTR_5g006800 | 70.492 | 366 | 103 | 1 | 14 | 374 | 4 | 369 | 0.0 | 556 |
| MS.gene070007.t1 | MTR_5g006710 | 70.986 | 355 | 102 | 1 | 20 | 374 | 10 | 363 | 0.0 | 546 |
| MS.gene070007.t1 | MTR_5g006780 | 69.613 | 362 | 103 | 2 | 20 | 374 | 10 | 371 | 0.0 | 534 |
| MS.gene070007.t1 | MTR_5g006670 | 69.577 | 355 | 107 | 1 | 20 | 374 | 6 | 359 | 0.0 | 532 |
| MS.gene070007.t1 | MTR_5g008040 | 67.688 | 359 | 111 | 1 | 20 | 373 | 12 | 370 | 0.0 | 531 |
| MS.gene070007.t1 | MTR_5g006750 | 67.680 | 362 | 110 | 2 | 20 | 374 | 10 | 371 | 0.0 | 525 |
| MS.gene070007.t1 | MTR_5g006740 | 66.389 | 360 | 116 | 2 | 20 | 374 | 6 | 365 | 0.0 | 515 |
| MS.gene070007.t1 | MTR_5g006740 | 63.333 | 360 | 110 | 4 | 20 | 374 | 6 | 348 | 2.71e-169 | 476 |
| MS.gene070007.t1 | MTR_5g006720 | 60.108 | 371 | 105 | 3 | 20 | 374 | 9 | 352 | 1.97e-160 | 454 |
| MS.gene070007.t1 | MTR_4g125470 | 53.514 | 370 | 154 | 5 | 22 | 373 | 19 | 388 | 1.05e-137 | 398 |
| MS.gene070007.t1 | MTR_5g006730 | 80.189 | 106 | 21 | 0 | 20 | 125 | 10 | 115 | 4.88e-58 | 185 |
| MS.gene070007.t1 | MTR_3g096570 | 77.419 | 62 | 14 | 0 | 180 | 241 | 8 | 69 | 2.07e-26 | 106 |
| MS.gene070007.t1 | MTR_3g096562 | 66.667 | 72 | 24 | 0 | 170 | 241 | 162 | 233 | 4.71e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070007.t1 | AT1G76680 | 68.852 | 366 | 109 | 1 | 15 | 375 | 5 | 370 | 0.0 | 537 |
| MS.gene070007.t1 | AT1G76690 | 67.760 | 366 | 113 | 1 | 15 | 375 | 7 | 372 | 0.0 | 536 |
| MS.gene070007.t1 | AT1G76680 | 64.450 | 391 | 109 | 2 | 15 | 375 | 5 | 395 | 0.0 | 523 |
| MS.gene070007.t1 | AT1G09400 | 66.154 | 325 | 109 | 1 | 28 | 352 | 1 | 324 | 3.46e-164 | 462 |
| MS.gene070007.t1 | AT2G06050 | 52.139 | 374 | 157 | 4 | 22 | 373 | 12 | 385 | 6.69e-136 | 393 |
| MS.gene070007.t1 | AT2G06050 | 52.139 | 374 | 157 | 4 | 22 | 373 | 12 | 385 | 6.69e-136 | 393 |
| MS.gene070007.t1 | AT2G06050 | 52.139 | 374 | 157 | 4 | 22 | 373 | 12 | 385 | 6.69e-136 | 393 |
| MS.gene070007.t1 | AT1G09400 | 67.170 | 265 | 86 | 1 | 88 | 352 | 2 | 265 | 8.77e-134 | 383 |
| MS.gene070007.t1 | AT1G17990 | 65.251 | 259 | 88 | 2 | 14 | 271 | 1 | 258 | 2.10e-128 | 370 |
| MS.gene070007.t1 | AT1G18020 | 65.251 | 259 | 88 | 2 | 14 | 271 | 1 | 258 | 2.10e-128 | 370 |
| MS.gene070007.t1 | AT1G17990 | 62.548 | 259 | 87 | 3 | 14 | 271 | 1 | 250 | 9.28e-120 | 347 |
Find 102 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 3.1:+91459212 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 3.1:+91458280 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 3.1:+91459819 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 3.1:+91457848 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 3.1:-91459214 | MS.gene070007:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 3.1:+91457564 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 3.1:+91458240 | None:intergenic |
| TAGAATGACCAAAGCGATTA+TGG | 0.270247 | 3.1:-91460064 | None:intergenic |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 3.1:-91459735 | MS.gene070007:CDS |
| TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 3.1:-91458368 | MS.gene070007:CDS |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.321623 | 3.1:+91457398 | None:intergenic |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 3.1:-91457472 | MS.gene070007:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 3.1:+91457480 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 3.1:-91459746 | MS.gene070007:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 3.1:-91459747 | MS.gene070007:CDS |
| GCATCCAACTCAAATCTTCT+AGG | 0.344741 | 3.1:+91457421 | None:intergenic |
| CTCTTCTTCCATAATCGCTT+TGG | 0.345327 | 3.1:+91460056 | None:intergenic |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 3.1:-91457538 | MS.gene070007:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 3.1:+91459213 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 3.1:-91457655 | MS.gene070007:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 3.1:+91458367 | None:intergenic |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 3.1:-91457482 | MS.gene070007:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 3.1:-91457367 | MS.gene070007:CDS |
| GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 3.1:+91458382 | None:intergenic |
| CTTATCAGCCTTGTTCAATT+GGG | 0.402003 | 3.1:+91457399 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 3.1:+91457430 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 3.1:-91457688 | MS.gene070007:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 3.1:-91457525 | MS.gene070007:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 3.1:+91457573 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 3.1:-91457889 | MS.gene070007:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 3.1:-91457766 | MS.gene070007:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 3.1:-91459734 | MS.gene070007:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 3.1:-91460036 | MS.gene070007:CDS |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 3.1:+91459998 | None:intergenic |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 3.1:+91457363 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 3.1:+91458370 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 3.1:-91459107 | MS.gene070007:intron |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 3.1:-91459158 | MS.gene070007:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 3.1:+91459164 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 3.1:+91457607 | None:intergenic |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 3.1:-91457863 | MS.gene070007:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 3.1:-91459762 | MS.gene070007:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 3.1:-91457625 | MS.gene070007:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 3.1:+91459163 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 3.1:+91457555 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 3.1:-91457556 | MS.gene070007:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 3.1:+91458313 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 3.1:+91459999 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 3.1:+91457355 | None:intergenic |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 3.1:+91459094 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 3.1:-91460043 | MS.gene070007:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 3.1:-91459176 | MS.gene070007:CDS |
| TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 3.1:-91459201 | MS.gene070007:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 3.1:-91457425 | MS.gene070007:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 3.1:-91457898 | MS.gene070007:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 3.1:+91457715 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 3.1:-91459998 | MS.gene070007:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 3.1:-91459733 | MS.gene070007:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 3.1:-91457468 | MS.gene070007:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 3.1:-91457832 | MS.gene070007:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 3.1:+91457556 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 3.1:-91457535 | MS.gene070007:CDS |
| CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 3.1:-91459190 | MS.gene070007:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 3.1:+91459203 | None:intergenic |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 3.1:-91459975 | MS.gene070007:intron |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 3.1:-91459745 | MS.gene070007:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 3.1:-91457794 | MS.gene070007:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 3.1:-91459763 | MS.gene070007:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 3.1:-91457712 | MS.gene070007:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 3.1:+91457781 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 3.1:-91457493 | MS.gene070007:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 3.1:-91458397 | MS.gene070007:intron |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 3.1:-91458275 | MS.gene070007:CDS |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 3.1:-91457517 | MS.gene070007:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 3.1:-91459714 | MS.gene070007:CDS |
| TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 3.1:+91458386 | None:intergenic |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 3.1:+91458314 | None:intergenic |
| TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 3.1:+91459800 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 3.1:-91457503 | MS.gene070007:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 3.1:-91457828 | MS.gene070007:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 3.1:+91457679 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 3.1:-91457677 | MS.gene070007:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 3.1:-91457751 | MS.gene070007:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 3.1:+91457782 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 3.1:-91457829 | MS.gene070007:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 3.1:+91458307 | None:intergenic |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 3.1:+91460000 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 3.1:-91457624 | MS.gene070007:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 3.1:-91459824 | MS.gene070007:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 3.1:-91459759 | MS.gene070007:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 3.1:-91458352 | MS.gene070007:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 3.1:-91459221 | MS.gene070007:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 3.1:+91459719 | None:intergenic |
| TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 3.1:-91459198 | MS.gene070007:CDS |
| GTTGGATGCCCAATTGAACA+AGG | 0.658985 | 3.1:-91457407 | MS.gene070007:CDS |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 3.1:-91459997 | MS.gene070007:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 3.1:-91459155 | MS.gene070007:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 3.1:+91457680 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 3.1:-91457488 | MS.gene070007:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 3.1:+91459780 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 3.1:+91458310 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 3.1:-91459713 | MS.gene070007:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAACTAAAATAAATAC+AGG | - | chr3.1:91459465-91459484 | MS.gene070007:intron | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | - | chr3.1:91458660-91458679 | MS.gene070007:intron | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | + | chr3.1:91458400-91458419 | None:intergenic | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | - | chr3.1:91458661-91458680 | MS.gene070007:intron | 10.0% |
| !!! | AAGATTTTTTTAAAACTAAT+GGG | + | chr3.1:91458399-91458418 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | + | chr3.1:91458661-91458680 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | - | chr3.1:91458399-91458418 | MS.gene070007:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | + | chr3.1:91458660-91458679 | None:intergenic | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | - | chr3.1:91458400-91458419 | MS.gene070007:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | + | chr3.1:91457430-91457449 | None:intergenic | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | - | chr3.1:91459170-91459189 | MS.gene070007:CDS | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | - | chr3.1:91458885-91458904 | MS.gene070007:intron | 15.0% |
| !!! | AAATAACAACTCTATTTTTT+TGG | - | chr3.1:91457766-91457785 | MS.gene070007:CDS | 15.0% |
| !!! | AATAACAACTCTATTTTTTT+GGG | - | chr3.1:91457767-91457786 | MS.gene070007:CDS | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | + | chr3.1:91457843-91457862 | None:intergenic | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | - | chr3.1:91458762-91458781 | MS.gene070007:intron | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | - | chr3.1:91457842-91457861 | MS.gene070007:CDS | 15.0% |
| !!! | TCAAATTTTATTGTTAACAT+TGG | + | chr3.1:91458003-91458022 | None:intergenic | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | - | chr3.1:91458761-91458780 | MS.gene070007:intron | 15.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | + | chr3.1:91458067-91458086 | None:intergenic | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | - | chr3.1:91458836-91458855 | MS.gene070007:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | - | chr3.1:91459264-91459283 | MS.gene070007:intron | 20.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | + | chr3.1:91457431-91457450 | None:intergenic | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | - | chr3.1:91459265-91459284 | MS.gene070007:intron | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | - | chr3.1:91458443-91458462 | MS.gene070007:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | - | chr3.1:91459474-91459493 | MS.gene070007:intron | 20.0% |
| ! | AACGTTCTATCGATATATAT+AGG | + | chr3.1:91458968-91458987 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | - | chr3.1:91458856-91458875 | MS.gene070007:intron | 25.0% |
| !! | CCATCAAATAATCTAAAGTT+CGG | + | chr3.1:91458528-91458547 | None:intergenic | 25.0% |
| AAAAACTGATGACACAAACA+AGG | + | chr3.1:91458481-91458500 | None:intergenic | 30.0% | |
| AAGTTCAATTCAATGTGATG+AGG | + | chr3.1:91457470-91457489 | None:intergenic | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | - | chr3.1:91459849-91459868 | MS.gene070007:intron | 30.0% | |
| AGTTCAATTCAATGTGATGA+GGG | + | chr3.1:91457469-91457488 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | + | chr3.1:91457712-91457731 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | + | chr3.1:91459675-91459694 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGA+TGG | - | chr3.1:91458525-91458544 | MS.gene070007:intron | 30.0% | |
| CTAATAATTACCTGCTTCTA+TGG | + | chr3.1:91459150-91459169 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | + | chr3.1:91459301-91459320 | None:intergenic | 30.0% | |
| GCTAAGTCATTAAGTGAATT+AGG | - | chr3.1:91459732-91459751 | MS.gene070007:CDS | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | - | chr3.1:91457866-91457885 | MS.gene070007:CDS | 30.0% | |
| GTTTATGTTATAATTTCCCC+TGG | - | chr3.1:91458334-91458353 | MS.gene070007:CDS | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | + | chr3.1:91460035-91460054 | None:intergenic | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | - | chr3.1:91457625-91457644 | MS.gene070007:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | + | chr3.1:91457711-91457730 | None:intergenic | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | - | chr3.1:91457966-91457985 | MS.gene070007:intron | 30.0% | |
| TTATTCTCAACGAACAACAA+AGG | - | chr3.1:91457624-91457643 | MS.gene070007:CDS | 30.0% | |
| ! | CGAATTGTTTAGGAGAATTT+TGG | - | chr3.1:91458453-91458472 | MS.gene070007:intron | 30.0% |
| ! | TATGCTGATTATTGTGAATG+TGG | - | chr3.1:91459675-91459694 | MS.gene070007:intron | 30.0% |
| ! | TGAAGTCATTGACAACTTTT+GGG | + | chr3.1:91459109-91459128 | None:intergenic | 30.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | + | chr3.1:91457401-91457420 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | + | chr3.1:91457402-91457421 | None:intergenic | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | - | chr3.1:91458149-91458168 | MS.gene070007:intron | 30.0% |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | + | chr3.1:91460059-91460078 | None:intergenic | 30.0% |
| !! | TCTCAATGTTTTTGAATCCT+TGG | - | chr3.1:91458139-91458158 | MS.gene070007:intron | 30.0% |
| !! | TTTTGTGTGTGTGTCTTATT+AGG | - | chr3.1:91457533-91457552 | MS.gene070007:CDS | 30.0% |
| AAGGACCTTGTTCTTGTTAA+AGG | + | chr3.1:91457571-91457590 | None:intergenic | 35.0% | |
| ACATCATTGCTATGTATGCA+GGG | + | chr3.1:91459329-91459348 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | - | chr3.1:91458580-91458599 | MS.gene070007:intron | 35.0% | |
| AGTTGTCAATGACTTCAGAA+TGG | - | chr3.1:91459112-91459131 | MS.gene070007:CDS | 35.0% | |
| ATATCCAACAACAGGATCAT+TGG | + | chr3.1:91460027-91460046 | None:intergenic | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | - | chr3.1:91459763-91459782 | MS.gene070007:CDS | 35.0% | |
| CCATTGAAGATCTTTCTCAT+GGG | + | chr3.1:91459834-91459853 | None:intergenic | 35.0% | |
| CTAAAACCAGATACCATAGT+TGG | + | chr3.1:91458296-91458315 | None:intergenic | 35.0% | |
| CTTGCTTGATCAATTCCTAA+AGG | - | chr3.1:91459524-91459543 | MS.gene070007:intron | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | + | chr3.1:91457610-91457629 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | + | chr3.1:91457704-91457723 | None:intergenic | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | - | chr3.1:91457351-91457370 | MS.gene070007:CDS | 35.0% | |
| GGAAGAAGAGAATAAGAAAG+TGG | - | chr3.1:91457344-91457363 | MS.gene070007:CDS | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | + | chr3.1:91458580-91458599 | None:intergenic | 35.0% | |
| TATTGTCATGTCATTGAACC+TGG | - | chr3.1:91459762-91459781 | MS.gene070007:CDS | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | + | chr3.1:91458177-91458196 | None:intergenic | 35.0% | |
| TCCAATCTCAAGCACAAATA+AGG | - | chr3.1:91459019-91459038 | MS.gene070007:intron | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | + | chr3.1:91459835-91459854 | None:intergenic | 35.0% | |
| TCTTCCTAGAAGATTTGAGT+TGG | - | chr3.1:91459962-91459981 | MS.gene070007:intron | 35.0% | |
| TTATTTGTGCTTGAGATTGG+AGG | + | chr3.1:91459020-91459039 | None:intergenic | 35.0% | |
| TTGCACCTTTAACAAGAACA+AGG | - | chr3.1:91457563-91457582 | MS.gene070007:CDS | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | - | chr3.1:91459621-91459640 | MS.gene070007:intron | 35.0% |
| ! | AATAAGGCACTACAAAAGCA+AGG | - | chr3.1:91459035-91459054 | MS.gene070007:intron | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | + | chr3.1:91459110-91459129 | None:intergenic | 35.0% |
| ! | GAATTTTCCCATGTTGTATG+GGG | + | chr3.1:91457400-91457419 | None:intergenic | 35.0% |
| ! | GCATATTCTTTTGTCAGCTT+TGG | - | chr3.1:91458254-91458273 | MS.gene070007:CDS | 35.0% |
| ! | TCAAATCTTCTAGGAAGATC+TGG | + | chr3.1:91459960-91459979 | None:intergenic | 35.0% |
| ! | TCGATAGAACGTTTTTGAAC+AGG | - | chr3.1:91458975-91458994 | MS.gene070007:intron | 35.0% |
| !! | AAATACAGGTTTTGATGGAG+TGG | - | chr3.1:91459479-91459498 | MS.gene070007:intron | 35.0% |
| !! | CTTATCAGCCTTGTTCAATT+GGG | + | chr3.1:91459991-91460010 | None:intergenic | 35.0% |
| !! | GGTGTCACATTTTTCAAACA+TGG | + | chr3.1:91459796-91459815 | None:intergenic | 35.0% |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | + | chr3.1:91459992-91460011 | None:intergenic | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | + | chr3.1:91459099-91459118 | None:intergenic | 35.0% |
| AACGACAGAGATGATGAGTA+TGG | - | chr3.1:91459555-91459574 | MS.gene070007:intron | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | - | chr3.1:91459559-91459578 | MS.gene070007:intron | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | - | chr3.1:91458173-91458192 | MS.gene070007:intron | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | + | chr3.1:91459711-91459730 | None:intergenic | 40.0% | |
| CACATCATTGCTATGTATGC+AGG | + | chr3.1:91459330-91459349 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | - | chr3.1:91459831-91459850 | MS.gene070007:CDS | 40.0% | |
| CTCTTCTTCCATAATCGCTT+TGG | + | chr3.1:91457334-91457353 | None:intergenic | 40.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | - | chr3.1:91457412-91457431 | MS.gene070007:CDS | 40.0% | |
| GACTGAAGGAAACAATGTGT+TGG | - | chr3.1:91459884-91459903 | MS.gene070007:intron | 40.0% | |
| GATCTTTCTCATGGGCATTA+AGG | + | chr3.1:91459826-91459845 | None:intergenic | 40.0% | |
| GCATCCAACTCAAATCTTCT+AGG | + | chr3.1:91459969-91459988 | None:intergenic | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | - | chr3.1:91459852-91459871 | MS.gene070007:intron | 40.0% | |
| GTCAGATTTCGCTTATCATG+TGG | - | chr3.1:91458502-91458521 | MS.gene070007:intron | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | + | chr3.1:91458178-91458197 | None:intergenic | 40.0% | |
| TACACCAATGATCCTGTTGT+TGG | - | chr3.1:91460020-91460039 | MS.gene070007:CDS | 40.0% | |
| TATTTGGACAAGAGAACAGG+TGG | - | chr3.1:91458189-91458208 | MS.gene070007:intron | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | + | chr3.1:91458226-91458245 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | - | chr3.1:91458186-91458205 | MS.gene070007:intron | 40.0% | |
| TGGTTGAGCAACGAAATTGA+AGG | + | chr3.1:91457590-91457609 | None:intergenic | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | + | chr3.1:91459710-91459729 | None:intergenic | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | + | chr3.1:91459542-91459561 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | + | chr3.1:91458187-91458206 | None:intergenic | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | + | chr3.1:91458159-91458178 | None:intergenic | 40.0% | |
| TTTGATGGAGTGGAGATACA+TGG | - | chr3.1:91459489-91459508 | MS.gene070007:intron | 40.0% | |
| ! | ACCTGCTTCTATGGCATTTT+TGG | + | chr3.1:91459141-91459160 | None:intergenic | 40.0% |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | - | chr3.1:91459929-91459948 | MS.gene070007:intron | 40.0% |
| ! | CCCCTGGATTAGAAACAATA+CGG | - | chr3.1:91458350-91458369 | MS.gene070007:CDS | 40.0% |
| ! | CCCTGGATTAGAAACAATAC+GGG | - | chr3.1:91458351-91458370 | MS.gene070007:CDS | 40.0% |
| ! | TCATGCTTTAGGCATCTACA+TGG | - | chr3.1:91459710-91459729 | MS.gene070007:intron | 40.0% |
| ! | TTGTTGCTGGTGGATACAAT+AGG | - | chr3.1:91459862-91459881 | MS.gene070007:intron | 40.0% |
| !! | CCCGTATTGTTTCTAATCCA+GGG | + | chr3.1:91458354-91458373 | None:intergenic | 40.0% |
| !! | CCGTATTGTTTCTAATCCAG+GGG | + | chr3.1:91458353-91458372 | None:intergenic | 40.0% |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | + | chr3.1:91459023-91459042 | None:intergenic | 40.0% |
| AAAGGGTGGCTTCTTGATTG+GGG | - | chr3.1:91457642-91457661 | MS.gene070007:CDS | 45.0% | |
| AATGTGATGAGGGTCTGTCT+AGG | + | chr3.1:91457459-91457478 | None:intergenic | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | - | chr3.1:91457640-91457659 | MS.gene070007:CDS | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | + | chr3.1:91459609-91459628 | None:intergenic | 45.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | + | chr3.1:91457390-91457409 | None:intergenic | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | - | chr3.1:91457641-91457660 | MS.gene070007:CDS | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | + | chr3.1:91459817-91459836 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | + | chr3.1:91457391-91457410 | None:intergenic | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | + | chr3.1:91458227-91458246 | None:intergenic | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | + | chr3.1:91459608-91459627 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | - | chr3.1:91457390-91457409 | MS.gene070007:CDS | 45.0% | |
| GAAGCATGGAAACCCATTGT+TGG | - | chr3.1:91458211-91458230 | MS.gene070007:intron | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | - | chr3.1:91459558-91459577 | MS.gene070007:intron | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | - | chr3.1:91459699-91459718 | MS.gene070007:intron | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | - | chr3.1:91459636-91459655 | MS.gene070007:intron | 45.0% | |
| GAGTGTCCAACTATGGTATC+TGG | - | chr3.1:91458287-91458306 | MS.gene070007:CDS | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | - | chr3.1:91459137-91459156 | MS.gene070007:CDS | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | - | chr3.1:91459870-91459889 | MS.gene070007:intron | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | - | chr3.1:91459498-91459517 | MS.gene070007:intron | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | - | chr3.1:91458229-91458248 | MS.gene070007:intron | 45.0% | |
| GTTGGATGCCCAATTGAACA+AGG | - | chr3.1:91459980-91459999 | MS.gene070007:CDS | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | - | chr3.1:91457628-91457647 | MS.gene070007:CDS | 45.0% | |
| TGAACAGGTTACCAACCAGA+TGG | - | chr3.1:91458990-91459009 | MS.gene070007:intron | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | - | chr3.1:91459894-91459913 | MS.gene070007:intron | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | - | chr3.1:91459919-91459938 | MS.gene070007:intron | 45.0% |
| !! | GCCCGTATTGTTTCTAATCC+AGG | + | chr3.1:91458355-91458374 | None:intergenic | 45.0% |
| !! | TGAAGGTACCCAAATACACC+TGG | - | chr3.1:91458166-91458185 | MS.gene070007:intron | 45.0% |
| CAAGAGAACAGGTGGAAGCA+TGG | - | chr3.1:91458197-91458216 | MS.gene070007:intron | 50.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | + | chr3.1:91457392-91457411 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | - | chr3.1:91457389-91457408 | MS.gene070007:CDS | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | - | chr3.1:91458232-91458251 | MS.gene070007:intron | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | + | chr3.1:91459910-91459929 | None:intergenic | 50.0% | |
| TCAAACATGGTGCACATCCC+AGG | + | chr3.1:91459783-91459802 | None:intergenic | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | - | chr3.1:91457653-91457672 | MS.gene070007:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | - | chr3.1:91457652-91457671 | MS.gene070007:CDS | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | - | chr3.1:91459915-91459934 | MS.gene070007:intron | 50.0% |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | - | chr3.1:91458280-91458299 | MS.gene070007:CDS | 50.0% |
| !! | TTTTGTCAGCTTTGGCACGC+TGG | - | chr3.1:91458262-91458281 | MS.gene070007:CDS | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | - | chr3.1:91457654-91457673 | MS.gene070007:CDS | 55.0% | |
| GAGATTGGAGGCTGTCCATC+TGG | + | chr3.1:91459008-91459027 | None:intergenic | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | - | chr3.1:91457674-91457693 | MS.gene070007:CDS | 55.0% | |
| TTGGAGGCTGTCCATCTGGT+TGG | + | chr3.1:91459004-91459023 | None:intergenic | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | + | chr3.1:91459076-91459095 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | + | chr3.1:91459083-91459102 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | - | chr3.1:91459593-91459612 | MS.gene070007:intron | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | - | chr3.1:91459899-91459918 | MS.gene070007:intron | 55.0% |
| GGCCAGCAATGGTGCGGATT+TGG | - | chr3.1:91459905-91459924 | MS.gene070007:intron | 60.0% | |
| GGGGTCTCAGACACTGCACA+AGG | - | chr3.1:91457673-91457692 | MS.gene070007:CDS | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | + | chr3.1:91459077-91459096 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | + | chr3.1:91459080-91459099 | None:intergenic | 60.0% | |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | + | chr3.1:91457671-91457690 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 91457327 | 91460082 | 91457327 | ID=MS.gene070007 |
| chr3.1 | mRNA | 91457327 | 91460082 | 91457327 | ID=MS.gene070007.t1;Parent=MS.gene070007 |
| chr3.1 | exon | 91459976 | 91460082 | 91459976 | ID=MS.gene070007.t1.exon1;Parent=MS.gene070007.t1 |
| chr3.1 | CDS | 91459976 | 91460082 | 91459976 | ID=cds.MS.gene070007.t1;Parent=MS.gene070007.t1 |
| chr3.1 | exon | 91459714 | 91459854 | 91459714 | ID=MS.gene070007.t1.exon2;Parent=MS.gene070007.t1 |
| chr3.1 | CDS | 91459714 | 91459854 | 91459714 | ID=cds.MS.gene070007.t1;Parent=MS.gene070007.t1 |
| chr3.1 | exon | 91459108 | 91459238 | 91459108 | ID=MS.gene070007.t1.exon3;Parent=MS.gene070007.t1 |
| chr3.1 | CDS | 91459108 | 91459238 | 91459108 | ID=cds.MS.gene070007.t1;Parent=MS.gene070007.t1 |
| chr3.1 | exon | 91458251 | 91458412 | 91458251 | ID=MS.gene070007.t1.exon4;Parent=MS.gene070007.t1 |
| chr3.1 | CDS | 91458251 | 91458412 | 91458251 | ID=cds.MS.gene070007.t1;Parent=MS.gene070007.t1 |
| chr3.1 | exon | 91457327 | 91457922 | 91457327 | ID=MS.gene070007.t1.exon5;Parent=MS.gene070007.t1 |
| chr3.1 | CDS | 91457327 | 91457922 | 91457327 | ID=cds.MS.gene070007.t1;Parent=MS.gene070007.t1 |
| Gene Sequence |
| Protein sequence |
