Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070099.t1 | XP_003612619.2 | 94.4 | 160 | 9 | 0 | 1 | 160 | 1 | 160 | 7.00E-77 | 296.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070099.t1 | Q5Z676 | 39.7 | 156 | 90 | 3 | 7 | 159 | 16 | 170 | 6.5e-23 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070099.t1 | G7K6V7 | 94.4 | 160 | 9 | 0 | 1 | 160 | 1 | 160 | 5.0e-77 | 296.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053216 | MS.gene070099 | 0.822449 | 2.35E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene070099 | 0.803729 | 3.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070099.t1 | MTR_5g027000 | 94.375 | 160 | 9 | 0 | 1 | 160 | 1 | 160 | 7.73e-106 | 299 |
| MS.gene070099.t1 | MTR_8g105230 | 42.748 | 131 | 75 | 0 | 23 | 153 | 37 | 167 | 2.01e-29 | 106 |
| MS.gene070099.t1 | MTR_1g032070 | 38.168 | 131 | 81 | 0 | 23 | 153 | 47 | 177 | 1.27e-25 | 97.1 |
| MS.gene070099.t1 | MTR_1g076650 | 35.821 | 134 | 86 | 0 | 19 | 152 | 9 | 142 | 4.51e-24 | 91.7 |
| MS.gene070099.t1 | MTR_6g025320 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 7.61e-24 | 91.3 |
| MS.gene070099.t1 | MTR_5g088320 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 1.25e-23 | 90.5 |
| MS.gene070099.t1 | MTR_7g087610 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 4.18e-23 | 89.4 |
| MS.gene070099.t1 | MTR_8g066630 | 33.566 | 143 | 92 | 1 | 19 | 158 | 14 | 156 | 6.21e-23 | 89.4 |
| MS.gene070099.t1 | MTR_1g041285 | 33.333 | 135 | 90 | 0 | 18 | 152 | 8 | 142 | 1.37e-21 | 85.5 |
| MS.gene070099.t1 | MTR_3g067610 | 35.385 | 130 | 80 | 1 | 27 | 156 | 10 | 135 | 8.47e-20 | 80.5 |
| MS.gene070099.t1 | MTR_8g107110 | 32.061 | 131 | 88 | 1 | 23 | 153 | 25 | 154 | 1.31e-18 | 78.2 |
| MS.gene070099.t1 | MTR_5g079340 | 32.061 | 131 | 86 | 2 | 27 | 156 | 9 | 137 | 6.38e-18 | 75.5 |
| MS.gene070099.t1 | MTR_4g112460 | 31.973 | 147 | 95 | 2 | 12 | 156 | 4 | 147 | 2.95e-17 | 74.7 |
| MS.gene070099.t1 | MTR_8g069915 | 31.034 | 145 | 98 | 1 | 14 | 156 | 4 | 148 | 3.39e-17 | 74.7 |
| MS.gene070099.t1 | MTR_1g046950 | 32.331 | 133 | 88 | 1 | 23 | 153 | 5 | 137 | 8.42e-17 | 72.8 |
| MS.gene070099.t1 | MTR_6g079570 | 30.216 | 139 | 95 | 2 | 23 | 160 | 27 | 164 | 1.19e-16 | 73.2 |
| MS.gene070099.t1 | MTR_7g089760 | 31.884 | 138 | 92 | 1 | 23 | 158 | 6 | 143 | 1.69e-16 | 72.4 |
| MS.gene070099.t1 | MTR_6g023460 | 28.369 | 141 | 100 | 1 | 16 | 156 | 2 | 141 | 4.68e-16 | 70.9 |
| MS.gene070099.t1 | MTR_1g047100 | 29.927 | 137 | 95 | 1 | 23 | 158 | 5 | 141 | 5.15e-16 | 70.9 |
| MS.gene070099.t1 | MTR_5g011850 | 28.889 | 135 | 94 | 1 | 18 | 152 | 8 | 140 | 5.24e-16 | 70.9 |
| MS.gene070099.t1 | MTR_4g067270 | 31.579 | 133 | 89 | 1 | 23 | 153 | 6 | 138 | 8.21e-16 | 70.5 |
| MS.gene070099.t1 | MTR_4g103655 | 32.031 | 128 | 86 | 1 | 30 | 157 | 14 | 140 | 3.56e-15 | 68.6 |
| MS.gene070099.t1 | MTR_2g098890 | 30.370 | 135 | 90 | 2 | 23 | 153 | 65 | 199 | 3.95e-15 | 70.1 |
| MS.gene070099.t1 | MTR_4g086260 | 31.250 | 128 | 84 | 2 | 26 | 152 | 61 | 185 | 6.59e-15 | 68.9 |
| MS.gene070099.t1 | MTR_4g103630 | 32.031 | 128 | 86 | 1 | 30 | 157 | 14 | 140 | 1.20e-14 | 67.0 |
| MS.gene070099.t1 | MTR_4g103650 | 32.031 | 128 | 86 | 1 | 30 | 157 | 10 | 136 | 2.16e-14 | 66.2 |
| MS.gene070099.t1 | MTR_7g115040 | 29.104 | 134 | 95 | 0 | 19 | 152 | 9 | 142 | 2.31e-14 | 66.6 |
| MS.gene070099.t1 | MTR_3g083470 | 31.538 | 130 | 79 | 1 | 27 | 156 | 98 | 217 | 1.65e-13 | 65.9 |
| MS.gene070099.t1 | MTR_1g071150 | 29.927 | 137 | 95 | 1 | 16 | 152 | 6 | 141 | 1.91e-13 | 64.3 |
| MS.gene070099.t1 | MTR_8g036075 | 32.394 | 142 | 82 | 4 | 23 | 153 | 50 | 188 | 3.27e-13 | 64.7 |
| MS.gene070099.t1 | MTR_0168s0120 | 30.189 | 106 | 74 | 0 | 47 | 152 | 1 | 106 | 4.77e-13 | 62.4 |
| MS.gene070099.t1 | MTR_6g025320 | 30.189 | 106 | 74 | 0 | 47 | 152 | 1 | 106 | 4.77e-13 | 62.4 |
| MS.gene070099.t1 | MTR_8g099095 | 27.815 | 151 | 107 | 2 | 2 | 152 | 351 | 499 | 5.83e-13 | 65.9 |
| MS.gene070099.t1 | MTR_5g009830 | 27.815 | 151 | 107 | 2 | 2 | 152 | 351 | 499 | 9.80e-13 | 65.1 |
| MS.gene070099.t1 | MTR_7g075040 | 32.484 | 157 | 92 | 6 | 12 | 158 | 40 | 192 | 7.17e-12 | 60.8 |
| MS.gene070099.t1 | MTR_3g089070 | 29.600 | 125 | 87 | 1 | 28 | 152 | 12 | 135 | 1.19e-11 | 59.3 |
| MS.gene070099.t1 | MTR_3g089090 | 29.600 | 125 | 87 | 1 | 28 | 152 | 11 | 134 | 1.31e-11 | 59.3 |
| MS.gene070099.t1 | MTR_7g090450 | 30.201 | 149 | 95 | 4 | 16 | 157 | 67 | 213 | 1.61e-11 | 60.5 |
| MS.gene070099.t1 | MTR_7g074020 | 25.547 | 137 | 102 | 0 | 16 | 152 | 24 | 160 | 3.96e-11 | 58.5 |
| MS.gene070099.t1 | MTR_0028s0170 | 28.358 | 134 | 94 | 2 | 19 | 152 | 380 | 511 | 4.26e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070099.t1 | AT1G24620 | 34.000 | 150 | 99 | 0 | 7 | 156 | 22 | 171 | 7.28e-27 | 100 |
| MS.gene070099.t1 | AT5G37780 | 35.461 | 141 | 91 | 0 | 16 | 156 | 6 | 146 | 1.42e-24 | 93.2 |
| MS.gene070099.t1 | AT1G66410 | 35.461 | 141 | 91 | 0 | 16 | 156 | 6 | 146 | 1.42e-24 | 93.2 |
| MS.gene070099.t1 | AT5G21274 | 35.036 | 137 | 89 | 0 | 16 | 152 | 6 | 142 | 3.83e-24 | 92.0 |
| MS.gene070099.t1 | AT4G14640 | 35.766 | 137 | 88 | 0 | 16 | 152 | 7 | 143 | 4.49e-24 | 92.0 |
| MS.gene070099.t1 | AT3G56800 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 7.64e-24 | 91.3 |
| MS.gene070099.t1 | AT2G27030 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 7.64e-24 | 91.3 |
| MS.gene070099.t1 | AT2G41110 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 7.64e-24 | 91.3 |
| MS.gene070099.t1 | AT3G43810 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 7.97e-24 | 91.3 |
| MS.gene070099.t1 | AT2G27030 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 1.44e-23 | 91.3 |
| MS.gene070099.t1 | AT3G43810 | 34.307 | 137 | 90 | 0 | 16 | 152 | 6 | 142 | 2.17e-23 | 91.7 |
| MS.gene070099.t1 | AT3G22930 | 35.766 | 137 | 88 | 0 | 16 | 152 | 29 | 165 | 3.51e-23 | 90.1 |
| MS.gene070099.t1 | AT2G41110 | 31.544 | 149 | 90 | 1 | 16 | 152 | 6 | 154 | 2.20e-20 | 82.8 |
| MS.gene070099.t1 | AT5G37780 | 32.051 | 156 | 91 | 1 | 16 | 156 | 6 | 161 | 2.66e-20 | 82.4 |
| MS.gene070099.t1 | AT1G66400 | 31.034 | 145 | 98 | 1 | 11 | 153 | 4 | 148 | 1.88e-19 | 80.1 |
| MS.gene070099.t1 | AT1G18210 | 29.771 | 131 | 88 | 1 | 23 | 153 | 24 | 150 | 2.50e-19 | 80.1 |
| MS.gene070099.t1 | AT1G18210 | 29.771 | 131 | 88 | 1 | 23 | 153 | 24 | 150 | 2.50e-19 | 80.1 |
| MS.gene070099.t1 | AT5G37780 | 29.940 | 167 | 91 | 1 | 16 | 156 | 6 | 172 | 9.81e-19 | 78.6 |
| MS.gene070099.t1 | AT1G66410 | 33.884 | 121 | 80 | 0 | 36 | 156 | 36 | 156 | 1.36e-18 | 77.8 |
| MS.gene070099.t1 | AT5G37780 | 33.884 | 121 | 80 | 0 | 36 | 156 | 13 | 133 | 1.53e-18 | 77.4 |
| MS.gene070099.t1 | AT5G37770 | 32.237 | 152 | 99 | 1 | 6 | 153 | 1 | 152 | 2.30e-18 | 77.4 |
| MS.gene070099.t1 | AT5G37770 | 32.237 | 152 | 99 | 1 | 6 | 153 | 1 | 152 | 2.30e-18 | 77.4 |
| MS.gene070099.t1 | AT4G14640 | 34.188 | 117 | 77 | 0 | 36 | 152 | 9 | 125 | 3.10e-18 | 76.3 |
| MS.gene070099.t1 | AT1G32250 | 28.767 | 146 | 98 | 1 | 19 | 158 | 13 | 158 | 3.51e-17 | 74.3 |
| MS.gene070099.t1 | AT1G05990 | 34.058 | 138 | 88 | 2 | 23 | 157 | 6 | 143 | 8.75e-17 | 73.2 |
| MS.gene070099.t1 | AT1G73630 | 26.282 | 156 | 111 | 1 | 3 | 158 | 1 | 152 | 1.27e-16 | 72.8 |
| MS.gene070099.t1 | AT3G03000 | 34.043 | 141 | 92 | 1 | 19 | 158 | 17 | 157 | 2.04e-16 | 72.4 |
| MS.gene070099.t1 | AT4G12860 | 31.387 | 137 | 92 | 1 | 23 | 157 | 6 | 142 | 1.10e-15 | 70.1 |
| MS.gene070099.t1 | AT3G59440 | 34.459 | 148 | 93 | 3 | 13 | 158 | 43 | 188 | 2.49e-15 | 70.1 |
| MS.gene070099.t1 | AT1G62820 | 29.630 | 135 | 93 | 1 | 18 | 152 | 9 | 141 | 6.12e-15 | 68.2 |
| MS.gene070099.t1 | AT1G12310 | 29.630 | 135 | 93 | 1 | 18 | 152 | 9 | 141 | 2.28e-14 | 66.6 |
| MS.gene070099.t1 | AT4G03290 | 32.624 | 141 | 90 | 2 | 23 | 158 | 6 | 146 | 2.42e-14 | 66.6 |
| MS.gene070099.t1 | AT1G66410 | 31.818 | 110 | 75 | 0 | 47 | 156 | 1 | 110 | 6.21e-14 | 64.7 |
| MS.gene070099.t1 | AT1G66410 | 31.818 | 110 | 75 | 0 | 47 | 156 | 1 | 110 | 6.21e-14 | 64.7 |
| MS.gene070099.t1 | AT3G50360 | 27.737 | 137 | 99 | 0 | 16 | 152 | 21 | 157 | 6.26e-14 | 65.9 |
| MS.gene070099.t1 | AT3G51920 | 28.467 | 137 | 98 | 0 | 16 | 152 | 6 | 142 | 6.34e-14 | 65.5 |
| MS.gene070099.t1 | AT4G37010 | 28.467 | 137 | 98 | 0 | 16 | 152 | 21 | 157 | 8.18e-14 | 65.9 |
| MS.gene070099.t1 | AT4G37010 | 28.467 | 137 | 98 | 0 | 16 | 152 | 25 | 161 | 8.46e-14 | 65.9 |
| MS.gene070099.t1 | AT3G07490 | 31.579 | 133 | 89 | 1 | 23 | 153 | 6 | 138 | 8.87e-14 | 65.1 |
| MS.gene070099.t1 | AT2G43290 | 32.847 | 137 | 85 | 3 | 23 | 152 | 66 | 202 | 1.43e-13 | 65.9 |
| MS.gene070099.t1 | AT4G14640 | 32.039 | 103 | 70 | 0 | 16 | 118 | 7 | 109 | 1.50e-13 | 63.9 |
| MS.gene070099.t1 | AT3G43810 | 30.189 | 106 | 74 | 0 | 47 | 152 | 1 | 106 | 5.00e-13 | 62.4 |
| MS.gene070099.t1 | AT3G43810 | 30.189 | 106 | 74 | 0 | 47 | 152 | 1 | 106 | 5.00e-13 | 62.4 |
| MS.gene070099.t1 | AT3G25600 | 27.778 | 144 | 102 | 1 | 15 | 156 | 5 | 148 | 5.09e-13 | 63.5 |
| MS.gene070099.t1 | AT3G10190 | 27.465 | 142 | 100 | 3 | 13 | 152 | 61 | 201 | 5.17e-13 | 64.3 |
| MS.gene070099.t1 | AT2G41410 | 34.694 | 147 | 80 | 7 | 23 | 159 | 71 | 211 | 5.64e-13 | 64.3 |
| MS.gene070099.t1 | AT3G22930 | 33.663 | 101 | 67 | 0 | 16 | 116 | 29 | 129 | 7.19e-13 | 62.4 |
| MS.gene070099.t1 | AT2G15680 | 27.273 | 132 | 90 | 2 | 23 | 152 | 51 | 178 | 1.12e-12 | 63.2 |
| MS.gene070099.t1 | AT2G41100 | 26.144 | 153 | 97 | 2 | 16 | 152 | 6 | 158 | 1.90e-12 | 63.9 |
| MS.gene070099.t1 | AT2G41100 | 25.595 | 168 | 105 | 3 | 5 | 152 | 81 | 248 | 7.59e-11 | 59.3 |
| MS.gene070099.t1 | AT2G41100 | 26.144 | 153 | 97 | 2 | 16 | 152 | 6 | 158 | 1.90e-12 | 63.9 |
| MS.gene070099.t1 | AT2G41100 | 25.595 | 168 | 105 | 3 | 5 | 152 | 81 | 248 | 7.59e-11 | 59.3 |
| MS.gene070099.t1 | AT1G18530 | 28.369 | 141 | 99 | 1 | 18 | 156 | 3 | 143 | 2.72e-12 | 61.6 |
| MS.gene070099.t1 | AT4G23650 | 28.289 | 152 | 102 | 3 | 1 | 152 | 367 | 511 | 3.93e-12 | 63.5 |
| MS.gene070099.t1 | AT1G76640 | 28.387 | 155 | 105 | 3 | 5 | 156 | 7 | 158 | 6.37e-12 | 60.5 |
| MS.gene070099.t1 | AT2G41860 | 27.451 | 153 | 105 | 2 | 6 | 158 | 348 | 494 | 5.40e-11 | 60.1 |
| MS.gene070099.t1 | AT2G41860 | 27.451 | 153 | 105 | 2 | 6 | 158 | 348 | 494 | 5.40e-11 | 60.1 |
| MS.gene070099.t1 | AT2G41100 | 25.595 | 168 | 105 | 3 | 5 | 152 | 46 | 213 | 6.29e-11 | 59.7 |
| MS.gene070099.t1 | AT2G41100 | 25.595 | 168 | 105 | 3 | 5 | 152 | 46 | 213 | 6.29e-11 | 59.7 |
| MS.gene070099.t1 | AT2G41100 | 25.595 | 168 | 105 | 3 | 5 | 152 | 46 | 213 | 6.29e-11 | 59.7 |
| MS.gene070099.t1 | AT5G19360 | 26.866 | 134 | 96 | 2 | 19 | 152 | 370 | 501 | 8.14e-11 | 59.7 |
Find 36 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTGCTTCTCTTGATA+TGG | 0.230821 | 5.4:-17885543 | MS.gene070099:CDS |
| CATGAGGTGATGGGAAATTT+TGG | 0.269755 | 5.4:-17885596 | MS.gene070099:CDS |
| TTCTCATCTCTCTGTTGAAA+TGG | 0.358991 | 5.4:-17885924 | MS.gene070099:CDS |
| AAGTGCAGCGTTTGAAGCTT+TGG | 0.363108 | 5.4:-17885657 | MS.gene070099:CDS |
| AGGAGGAATCATGGGGTCAC+TGG | 0.382463 | 5.4:-17885816 | MS.gene070099:CDS |
| CAAGTTTCAATTGATGCAAA+TGG | 0.385739 | 5.4:-17885957 | None:intergenic |
| AGAGATGAACACAAAGGGTT+TGG | 0.407031 | 5.4:-17885705 | MS.gene070099:CDS |
| CAATCAAGTTCTGTCACTAA+TGG | 0.407587 | 5.4:-17885894 | MS.gene070099:CDS |
| AACACAAAGGGTTTGGAGAC+TGG | 0.407732 | 5.4:-17885698 | MS.gene070099:CDS |
| TTTGAAGCTTTGGATGAAGA+TGG | 0.441935 | 5.4:-17885647 | MS.gene070099:CDS |
| GGAGGAATCATGGGGTCACT+GGG | 0.469532 | 5.4:-17885815 | MS.gene070099:CDS |
| GGCAGAGCTAGGAGGAATCA+TGG | 0.479002 | 5.4:-17885825 | MS.gene070099:CDS |
| CAAGGTGACAAGAACAAAGA+TGG | 0.479082 | 5.4:-17885752 | MS.gene070099:CDS |
| TTCTTAGAGATGAACACAAA+GGG | 0.500411 | 5.4:-17885710 | MS.gene070099:CDS |
| GTTGCTTCTCTTGATATGGA+TGG | 0.502637 | 5.4:-17885539 | MS.gene070099:CDS |
| GCAGAGCTAGGAGGAATCAT+GGG | 0.507839 | 5.4:-17885824 | MS.gene070099:CDS |
| TTGAAGCTTTGGATGAAGAT+GGG | 0.510505 | 5.4:-17885646 | MS.gene070099:CDS |
| GGATGATTTCCGACTCATAG+TGG | 0.513554 | 5.4:-17885498 | MS.gene070099:CDS |
| ATGTAATATATCTTAAACTA+GGG | 0.516431 | 5.4:+17885472 | None:intergenic |
| TATGTAATATATCTTAAACT+AGG | 0.524689 | 5.4:+17885471 | None:intergenic |
| TGGTGATGGAGCTGTGAGCT+TGG | 0.541436 | 5.4:-17885519 | MS.gene070099:CDS |
| TGCATTAACGAGGCAGAGCT+AGG | 0.543690 | 5.4:-17885836 | MS.gene070099:CDS |
| GGGAGAGCTACATGAGGTGA+TGG | 0.545118 | 5.4:-17885606 | MS.gene070099:CDS |
| TCTCTTGATATGGATGGTGA+TGG | 0.556032 | 5.4:-17885533 | MS.gene070099:CDS |
| GGAGAGCTACATGAGGTGAT+GGG | 0.583288 | 5.4:-17885605 | MS.gene070099:CDS |
| AAGGTGACAAGAACAAAGAT+GGG | 0.608897 | 5.4:-17885751 | MS.gene070099:CDS |
| GAAGCATTCAAAGCTTTCGA+CGG | 0.612389 | 5.4:-17885872 | MS.gene070099:CDS |
| GCTTTCGACGGAGACAACGA+TGG | 0.616688 | 5.4:-17885860 | MS.gene070099:CDS |
| CTAGGGATTCCACTATGAGT+CGG | 0.630184 | 5.4:+17885489 | None:intergenic |
| CAACGATGGGTGCATTAACG+AGG | 0.644925 | 5.4:-17885846 | MS.gene070099:CDS |
| GTTCTTAGAGATGAACACAA+AGG | 0.647298 | 5.4:-17885711 | MS.gene070099:CDS |
| CTTTCGACGGAGACAACGAT+GGG | 0.649619 | 5.4:-17885859 | MS.gene070099:CDS |
| GTGAGAGCAATGATACAACA+AGG | 0.679261 | 5.4:-17885770 | MS.gene070099:CDS |
| GAGGAATCATGGGGTCACTG+GGG | 0.686134 | 5.4:-17885814 | MS.gene070099:CDS |
| ATTAACGAGGCAGAGCTAGG+AGG | 0.697261 | 5.4:-17885833 | MS.gene070099:CDS |
| CAGAGCTAGGAGGAATCATG+GGG | 0.707619 | 5.4:-17885823 | MS.gene070099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTCTTAGAGATGAACACAAA+GGG | - | chr5.4:17885718-17885737 | MS.gene070099:CDS | 30.0% | |
| ! | TATTGTTGCTTCTCTTGATA+TGG | - | chr5.4:17885885-17885904 | MS.gene070099:CDS | 30.0% |
| AAGGTGACAAGAACAAAGAT+GGG | - | chr5.4:17885677-17885696 | MS.gene070099:CDS | 35.0% | |
| CAATCAAGTTCTGTCACTAA+TGG | - | chr5.4:17885534-17885553 | MS.gene070099:CDS | 35.0% | |
| GTTCTTAGAGATGAACACAA+AGG | - | chr5.4:17885717-17885736 | MS.gene070099:CDS | 35.0% | |
| TTCTCATCTCTCTGTTGAAA+TGG | - | chr5.4:17885504-17885523 | MS.gene070099:CDS | 35.0% | |
| !! | TTGAAGCTTTGGATGAAGAT+GGG | - | chr5.4:17885782-17885801 | MS.gene070099:CDS | 35.0% |
| !! | TTTGAAGCTTTGGATGAAGA+TGG | - | chr5.4:17885781-17885800 | MS.gene070099:CDS | 35.0% |
| !!! | ATGGGAATGAGATTTTGACT+GGG | - | chr5.4:17885800-17885819 | MS.gene070099:CDS | 35.0% |
| AGAGATGAACACAAAGGGTT+TGG | - | chr5.4:17885723-17885742 | MS.gene070099:CDS | 40.0% | |
| CAAGGTGACAAGAACAAAGA+TGG | - | chr5.4:17885676-17885695 | MS.gene070099:CDS | 40.0% | |
| GTGAGAGCAATGATACAACA+AGG | - | chr5.4:17885658-17885677 | MS.gene070099:CDS | 40.0% | |
| GTTGCTTCTCTTGATATGGA+TGG | - | chr5.4:17885889-17885908 | MS.gene070099:CDS | 40.0% | |
| TCTCTTGATATGGATGGTGA+TGG | - | chr5.4:17885895-17885914 | MS.gene070099:CDS | 40.0% | |
| ! | GAAGCATTCAAAGCTTTCGA+CGG | - | chr5.4:17885556-17885575 | MS.gene070099:CDS | 40.0% |
| !! | GATGGGAATGAGATTTTGAC+TGG | - | chr5.4:17885799-17885818 | MS.gene070099:CDS | 40.0% |
| !! | GTGATGGGAAATTTTGGTCT+TGG | - | chr5.4:17885838-17885857 | MS.gene070099:CDS | 40.0% |
| !!! | CATGAGGTGATGGGAAATTT+TGG | - | chr5.4:17885832-17885851 | MS.gene070099:CDS | 40.0% |
| !!! | TGGGAATGAGATTTTGACTG+GGG | - | chr5.4:17885801-17885820 | MS.gene070099:CDS | 40.0% |
| AACACAAAGGGTTTGGAGAC+TGG | - | chr5.4:17885730-17885749 | MS.gene070099:CDS | 45.0% | |
| CTAGGGATTCCACTATGAGT+CGG | + | chr5.4:17885942-17885961 | None:intergenic | 45.0% | |
| GGATGATTTCCGACTCATAG+TGG | - | chr5.4:17885930-17885949 | MS.gene070099:CDS | 45.0% | |
| ! | AAGTGCAGCGTTTGAAGCTT+TGG | - | chr5.4:17885771-17885790 | MS.gene070099:CDS | 45.0% |
| !!! | GGGAATGAGATTTTGACTGG+GGG | - | chr5.4:17885802-17885821 | MS.gene070099:CDS | 45.0% |
| ATTAACGAGGCAGAGCTAGG+AGG | - | chr5.4:17885595-17885614 | MS.gene070099:CDS | 50.0% | |
| CAACGATGGGTGCATTAACG+AGG | - | chr5.4:17885582-17885601 | MS.gene070099:CDS | 50.0% | |
| CAGAGCTAGGAGGAATCATG+GGG | - | chr5.4:17885605-17885624 | MS.gene070099:CDS | 50.0% | |
| CTTTCGACGGAGACAACGAT+GGG | - | chr5.4:17885569-17885588 | MS.gene070099:CDS | 50.0% | |
| GCAGAGCTAGGAGGAATCAT+GGG | - | chr5.4:17885604-17885623 | MS.gene070099:CDS | 50.0% | |
| GGAGAGCTACATGAGGTGAT+GGG | - | chr5.4:17885823-17885842 | MS.gene070099:CDS | 50.0% | |
| TGCATTAACGAGGCAGAGCT+AGG | - | chr5.4:17885592-17885611 | MS.gene070099:CDS | 50.0% | |
| AGGAGGAATCATGGGGTCAC+TGG | - | chr5.4:17885612-17885631 | MS.gene070099:CDS | 55.0% | |
| GAGGAATCATGGGGTCACTG+GGG | - | chr5.4:17885614-17885633 | MS.gene070099:CDS | 55.0% | |
| GCTTTCGACGGAGACAACGA+TGG | - | chr5.4:17885568-17885587 | MS.gene070099:CDS | 55.0% | |
| GGAGGAATCATGGGGTCACT+GGG | - | chr5.4:17885613-17885632 | MS.gene070099:CDS | 55.0% | |
| GGCAGAGCTAGGAGGAATCA+TGG | - | chr5.4:17885603-17885622 | MS.gene070099:CDS | 55.0% | |
| GGGAGAGCTACATGAGGTGA+TGG | - | chr5.4:17885822-17885841 | MS.gene070099:CDS | 55.0% | |
| !! | TGGTGATGGAGCTGTGAGCT+TGG | - | chr5.4:17885909-17885928 | MS.gene070099:CDS | 55.0% |
| GACTGGGGGAGAGCTACATG+AGG | - | chr5.4:17885816-17885835 | MS.gene070099:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17885484 | 17885966 | 17885484 | ID=MS.gene070099 |
| chr5.4 | mRNA | 17885484 | 17885966 | 17885484 | ID=MS.gene070099.t1;Parent=MS.gene070099 |
| chr5.4 | exon | 17885484 | 17885966 | 17885484 | ID=MS.gene070099.t1.exon1;Parent=MS.gene070099.t1 |
| chr5.4 | CDS | 17885484 | 17885966 | 17885484 | ID=cds.MS.gene070099.t1;Parent=MS.gene070099.t1 |
| Gene Sequence |
| Protein sequence |
