Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070103.t1 | XP_003612634.1 | 97.1 | 278 | 8 | 0 | 1 | 278 | 1 | 278 | 9.40E-154 | 552.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070103.t1 | Q60774 | 29.3 | 208 | 139 | 3 | 1 | 206 | 1 | 202 | 1.9e-14 | 81.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070103.t1 | G7K852 | 97.1 | 278 | 8 | 0 | 1 | 278 | 1 | 278 | 6.8e-154 | 552.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05985 | MS.gene070103 | -0.801038 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070103.t1 | MTR_5g027180 | 97.122 | 278 | 8 | 0 | 1 | 278 | 1 | 278 | 0.0 | 557 |
| MS.gene070103.t1 | MTR_8g071150 | 71.970 | 264 | 74 | 0 | 1 | 264 | 1 | 264 | 1.43e-145 | 409 |
| MS.gene070103.t1 | MTR_8g071140 | 63.347 | 251 | 92 | 0 | 14 | 264 | 111 | 361 | 2.80e-117 | 341 |
| MS.gene070103.t1 | MTR_4g068340 | 30.620 | 258 | 160 | 5 | 1 | 247 | 1 | 250 | 1.28e-31 | 119 |
| MS.gene070103.t1 | MTR_2g021690 | 26.374 | 273 | 189 | 5 | 1 | 266 | 1 | 268 | 5.98e-31 | 117 |
| MS.gene070103.t1 | MTR_1g112160 | 29.126 | 206 | 134 | 5 | 83 | 276 | 27 | 232 | 9.55e-23 | 94.4 |
| MS.gene070103.t1 | MTR_1g112150 | 26.117 | 291 | 193 | 7 | 1 | 278 | 1 | 282 | 8.43e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070103.t1 | AT1G32127 | 73.864 | 264 | 69 | 0 | 1 | 264 | 1 | 264 | 1.49e-145 | 409 |
| MS.gene070103.t1 | AT1G32127 | 73.864 | 264 | 69 | 0 | 1 | 264 | 1 | 264 | 1.49e-145 | 409 |
| MS.gene070103.t1 | AT1G55240 | 31.959 | 291 | 181 | 7 | 1 | 278 | 1 | 287 | 7.72e-45 | 154 |
| MS.gene070103.t1 | AT1G55230 | 27.972 | 286 | 193 | 6 | 1 | 277 | 1 | 282 | 2.49e-39 | 139 |
| MS.gene070103.t1 | AT5G19870 | 29.286 | 280 | 182 | 9 | 1 | 270 | 1 | 274 | 1.17e-33 | 124 |
| MS.gene070103.t1 | AT1G49470 | 31.835 | 267 | 156 | 7 | 1 | 251 | 1 | 257 | 2.69e-31 | 118 |
Find 59 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTGGGGTGTGGCATATT+TGG | 0.191911 | 5.4:-17927936 | MS.gene070103:CDS |
| CTTCTTATGTTCTTTATCTA+TGG | 0.197883 | 5.4:-17927688 | MS.gene070103:CDS |
| TAATGATTTGCATACAATTC+AGG | 0.249628 | 5.4:-17925524 | MS.gene070103:CDS |
| ATAAAATGCATAGTCCTATT+TGG | 0.267816 | 5.4:+17925839 | None:intergenic |
| ACCAGATGGTTGCAAGATTA+AGG | 0.289473 | 5.4:-17925695 | MS.gene070103:CDS |
| GCTCGAACACGAAACGTCTT+AGG | 0.306136 | 5.4:+17927886 | None:intergenic |
| AGTTGGGGTGTGGCATATTT+GGG | 0.310805 | 5.4:-17927935 | MS.gene070103:CDS |
| TTGCAACCATCTGGTATCAT+AGG | 0.312702 | 5.4:+17925703 | None:intergenic |
| TTTCAAGGGTCATGCTTTGC+CGG | 0.328389 | 5.4:-17927974 | MS.gene070103:CDS |
| ACCCTCCTCGTCTTCCAAAT+AGG | 0.366655 | 5.4:-17925853 | MS.gene070103:CDS |
| AAATCGGCTGGAAAGTTGTT+TGG | 0.368226 | 5.4:+17925793 | None:intergenic |
| GCTCTTTGTTGCCATCCTTT+CGG | 0.373014 | 5.4:-17925608 | MS.gene070103:CDS |
| GAGCTCTATGTTGTTGCAAT+TGG | 0.374652 | 5.4:-17927820 | MS.gene070103:CDS |
| CTTTAGCGCTGCAAGGCATA+TGG | 0.378119 | 5.4:-17925756 | MS.gene070103:CDS |
| TCCTTAATCTTGCAACCATC+TGG | 0.387259 | 5.4:+17925694 | None:intergenic |
| AGCGATGCCGTTGCATAAAT+CGG | 0.390715 | 5.4:+17925777 | None:intergenic |
| TGATGGGAGGCTAAAATACT+TGG | 0.399410 | 5.4:-17927842 | MS.gene070103:CDS |
| GCCATCCTTTCGGTTCTTGT+TGG | 0.409177 | 5.4:-17925598 | MS.gene070103:CDS |
| TTTCATTCAACATCACATAA+AGG | 0.423117 | 5.4:-17925895 | MS.gene070103:CDS |
| TTCAAGGGTCATGCTTTGCC+GGG | 0.438314 | 5.4:-17927973 | MS.gene070103:CDS |
| CTGGAAAGTTGTTTGGAAGA+AGG | 0.447000 | 5.4:+17925800 | None:intergenic |
| ACTCACCTCAAGATAATTGT+TGG | 0.467738 | 5.4:-17927760 | MS.gene070103:CDS |
| TGGAAAGTTGTTTGGAAGAA+GGG | 0.490039 | 5.4:+17925801 | None:intergenic |
| CGGAAAATGCCATGGCAGCT+AGG | 0.498795 | 5.4:+17925938 | None:intergenic |
| ATGAATGACTTTGAGCACTC+GGG | 0.516066 | 5.4:-17927715 | MS.gene070103:CDS |
| ATGCCGTTGCATAAATCGGC+TGG | 0.516097 | 5.4:+17925781 | None:intergenic |
| CTCCCATCAAAACCCGGTAC+AGG | 0.520728 | 5.4:+17927856 | None:intergenic |
| CATAAAATACCTTGTTGCAA+TGG | 0.527231 | 5.4:+17925964 | None:intergenic |
| TTTATGTTTCCTAGCTGCCA+TGG | 0.533188 | 5.4:-17925947 | MS.gene070103:CDS |
| AGACGTTTCGTGTTCGAGCG+TGG | 0.536426 | 5.4:-17927882 | MS.gene070103:CDS |
| TCGAGCGTGGAATCCTGTAC+CGG | 0.548667 | 5.4:-17927869 | MS.gene070103:CDS |
| GTTGTTTGGAAGAAGGGCTC+CGG | 0.548724 | 5.4:+17925807 | None:intergenic |
| TATGAATGACTTTGAGCACT+CGG | 0.553153 | 5.4:-17927716 | MS.gene070103:CDS |
| TTTGGAAGACGAGGAGGGTG+TGG | 0.553435 | 5.4:+17925857 | None:intergenic |
| TGCAACCATCTGGTATCATA+GGG | 0.554097 | 5.4:+17925704 | None:intergenic |
| TCAGTTGACAGTGAGATTCG+CGG | 0.561893 | 5.4:-17925652 | MS.gene070103:CDS |
| TATGGCCCTATGATACCAGA+TGG | 0.567288 | 5.4:-17925709 | MS.gene070103:CDS |
| TTTCCAGCCGATTTATGCAA+CGG | 0.568372 | 5.4:-17925784 | MS.gene070103:CDS |
| GATTTGCATACAATTCAGGA+TGG | 0.570638 | 5.4:-17925520 | MS.gene070103:CDS |
| CGAGCGTGGAATCCTGTACC+GGG | 0.573272 | 5.4:-17927868 | MS.gene070103:CDS |
| TTTATGTGATGTTGAATGAA+AGG | 0.575760 | 5.4:+17925897 | None:intergenic |
| TCAAAGTCATTCATATGAGA+AGG | 0.583114 | 5.4:+17927724 | None:intergenic |
| ACCAACAAGAACCGAAAGGA+TGG | 0.586194 | 5.4:+17925597 | None:intergenic |
| CACCTCAAGATAATTGTTGG+TGG | 0.591598 | 5.4:-17927757 | MS.gene070103:CDS |
| AACATCACATAAAGGTCTCG+AGG | 0.601372 | 5.4:-17925887 | MS.gene070103:CDS |
| GGCATCGCTTTAGCGCTGCA+AGG | 0.601674 | 5.4:-17925763 | MS.gene070103:CDS |
| AAAGGAGAATAGAAGATACT+CGG | 0.605972 | 5.4:+17925915 | None:intergenic |
| TCAAGGGTCATGCTTTGCCG+GGG | 0.619566 | 5.4:-17927972 | MS.gene070103:CDS |
| GTCCTATTTGGAAGACGAGG+AGG | 0.619764 | 5.4:+17925851 | None:intergenic |
| TTTAGCCTCCCATCAAAACC+CGG | 0.622539 | 5.4:+17927850 | None:intergenic |
| CACCACCAACAATTATCTTG+AGG | 0.625766 | 5.4:+17927755 | None:intergenic |
| TCCTATTTGGAAGACGAGGA+GGG | 0.627926 | 5.4:+17925852 | None:intergenic |
| AGATTTCTTCCATTGCAACA+AGG | 0.635937 | 5.4:-17925973 | MS.gene070103:CDS |
| ACATCACATAAAGGTCTCGA+GGG | 0.649189 | 5.4:-17925886 | MS.gene070103:CDS |
| TGAATGACTTTGAGCACTCG+GGG | 0.653649 | 5.4:-17927714 | MS.gene070103:CDS |
| ATACTCGGCGGAAAATGCCA+TGG | 0.666532 | 5.4:+17925930 | None:intergenic |
| CAGTACCAACAAGAACCGAA+AGG | 0.694080 | 5.4:+17925593 | None:intergenic |
| ATAGTCCTATTTGGAAGACG+AGG | 0.716043 | 5.4:+17925848 | None:intergenic |
| GGAGAATAGAAGATACTCGG+CGG | 0.725727 | 5.4:+17925918 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTCTATTTAAAC+AGG | + | chr5.4:17925925-17925944 | None:intergenic | 15.0% |
| !! | CTGTTTAAATAGAATAAATT+AGG | - | chr5.4:17925923-17925942 | MS.gene070103:CDS | 15.0% |
| !! | AATCTATGCAAGAAAAAAAA+CGG | + | chr5.4:17927498-17927517 | None:intergenic | 20.0% |
| !! | TTGTCTTATGATTATAGAAA+GGG | + | chr5.4:17926405-17926424 | None:intergenic | 20.0% |
| !! | TTTGTCTTATGATTATAGAA+AGG | + | chr5.4:17926406-17926425 | None:intergenic | 20.0% |
| !!! | TAAAAAAACATTTTTTGCAG+CGG | + | chr5.4:17926864-17926883 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAGTTAATGCAA+GGG | + | chr5.4:17927407-17927426 | None:intergenic | 20.0% |
| ! | ATAAAATGCATAGTCCTATT+TGG | + | chr5.4:17927650-17927669 | None:intergenic | 25.0% |
| ! | CTTCTTATGTTCTTTATCTA+TGG | - | chr5.4:17925798-17925817 | MS.gene070103:CDS | 25.0% |
| ! | GAGAAATAAACTGAATAAGA+AGG | - | chr5.4:17927154-17927173 | MS.gene070103:intron | 25.0% |
| ! | TCTATGATTAATCATGAGAA+AGG | + | chr5.4:17925985-17926004 | None:intergenic | 25.0% |
| ! | TCTCATGATTAATCATAGAT+AGG | - | chr5.4:17925986-17926005 | MS.gene070103:intron | 25.0% |
| ! | TTTATGTGATGTTGAATGAA+AGG | + | chr5.4:17927592-17927611 | None:intergenic | 25.0% |
| ! | TTTCATTCAACATCACATAA+AGG | - | chr5.4:17927591-17927610 | MS.gene070103:intron | 25.0% |
| !! | ATATTAAAACGAAGCTTTAG+TGG | - | chr5.4:17926538-17926557 | MS.gene070103:intron | 25.0% |
| !! | GTTCTTTAAAAGTTAATGCA+AGG | + | chr5.4:17927408-17927427 | None:intergenic | 25.0% |
| !! | TAATGATTTGCATACAATTC+AGG | - | chr5.4:17927962-17927981 | MS.gene070103:CDS | 25.0% |
| !! | TAATGTATTGATGTTCTAGA+TGG | + | chr5.4:17926361-17926380 | None:intergenic | 25.0% |
| !! | TAGTTACTTTCAAGTGAAAT+TGG | - | chr5.4:17926600-17926619 | MS.gene070103:intron | 25.0% |
| !!! | AATAATGACTTGTTCTAGAT+AGG | - | chr5.4:17926153-17926172 | MS.gene070103:intron | 25.0% |
| !!! | ATAATGACTTGTTCTAGATA+GGG | - | chr5.4:17926154-17926173 | MS.gene070103:intron | 25.0% |
| !!! | CAAACTGCTTTTGTTTTTTA+TGG | - | chr5.4:17927759-17927778 | MS.gene070103:CDS | 25.0% |
| !!! | TAGATCCTTTTTTTTCTTTC+CGG | - | chr5.4:17926244-17926263 | MS.gene070103:intron | 25.0% |
| !!! | TTGCATAGTTTTGAATTTCA+GGG | - | chr5.4:17926215-17926234 | MS.gene070103:intron | 25.0% |
| AAAGGAGAATAGAAGATACT+CGG | + | chr5.4:17927574-17927593 | None:intergenic | 30.0% | |
| AACACATCTTACTTGAGTAT+TGG | + | chr5.4:17926016-17926035 | None:intergenic | 30.0% | |
| AGTTTCCGGAAAGAAAAAAA+AGG | + | chr5.4:17926252-17926271 | None:intergenic | 30.0% | |
| ATAAACTGAATAAGAAGGCA+AGG | - | chr5.4:17927159-17927178 | MS.gene070103:intron | 30.0% | |
| ATAATACAGTAGACGATACA+AGG | + | chr5.4:17926966-17926985 | None:intergenic | 30.0% | |
| CATAAAATACCTTGTTGCAA+TGG | + | chr5.4:17927525-17927544 | None:intergenic | 30.0% | |
| CTTCAAATTTATGCATTGCA+AGG | - | chr5.4:17927284-17927303 | MS.gene070103:intron | 30.0% | |
| GAAAGGGAGTGAATAAAATT+AGG | + | chr5.4:17926389-17926408 | None:intergenic | 30.0% | |
| TCAAAGTCATTCATATGAGA+AGG | + | chr5.4:17925765-17925784 | None:intergenic | 30.0% | |
| TCAAGAACTAACATATCTAG+TGG | + | chr5.4:17926939-17926958 | None:intergenic | 30.0% | |
| TGTAAATGGTGTATTCTTTG+CGG | - | chr5.4:17927028-17927047 | MS.gene070103:intron | 30.0% | |
| TGTACTAAATAGTGTATCGT+AGG | - | chr5.4:17926128-17926147 | MS.gene070103:intron | 30.0% | |
| ! | GTACTAGCAAAATAACTTGT+AGG | + | chr5.4:17926443-17926462 | None:intergenic | 30.0% |
| ! | GTTTAATTTCCACAGTACAT+CGG | + | chr5.4:17926497-17926516 | None:intergenic | 30.0% |
| ! | TGCATTTTATCTTCAATTGC+CGG | - | chr5.4:17927660-17927679 | MS.gene070103:CDS | 30.0% |
| !! | AGTTTTGCTACATGATTTGT+GGG | + | chr5.4:17926737-17926756 | None:intergenic | 30.0% |
| !! | TACAAAGTATTGCTGAATAG+TGG | + | chr5.4:17926112-17926131 | None:intergenic | 30.0% |
| !!! | GTTGCATAGTTTTGAATTTC+AGG | - | chr5.4:17926214-17926233 | MS.gene070103:intron | 30.0% |
| AAAAAAAACGGAGAGGAGTA+TGG | + | chr5.4:17927486-17927505 | None:intergenic | 35.0% | |
| AACTATGCAACTGAATTGTG+TGG | - | chr5.4:17926268-17926287 | MS.gene070103:intron | 35.0% | |
| ACTCACCTCAAGATAATTGT+TGG | - | chr5.4:17925726-17925745 | MS.gene070103:CDS | 35.0% | |
| AGATTTCTTCCATTGCAACA+AGG | - | chr5.4:17927513-17927532 | MS.gene070103:intron | 35.0% | |
| ATGCAAGAAAAAAAACGGAG+AGG | + | chr5.4:17927493-17927512 | None:intergenic | 35.0% | |
| CAATTCAGTTGCATAGTTTC+CGG | + | chr5.4:17926266-17926285 | None:intergenic | 35.0% | |
| CTTCAAATTTATGCATTGCG+AGG | - | chr5.4:17927324-17927343 | MS.gene070103:intron | 35.0% | |
| GATTTGCATACAATTCAGGA+TGG | - | chr5.4:17927966-17927985 | MS.gene070103:CDS | 35.0% | |
| GTGTGTTTAGTTAAAGATGC+AGG | + | chr5.4:17927371-17927390 | None:intergenic | 35.0% | |
| TATGAATGACTTTGAGCACT+CGG | - | chr5.4:17925770-17925789 | MS.gene070103:CDS | 35.0% | |
| TGGAAAGTTGTTTGGAAGAA+GGG | + | chr5.4:17927688-17927707 | None:intergenic | 35.0% | |
| ! | CAAGTAAGATGTGTTCTAGA+CGG | - | chr5.4:17926021-17926040 | MS.gene070103:intron | 35.0% |
| ! | GAGTTTTGCTACATGATTTG+TGG | + | chr5.4:17926738-17926757 | None:intergenic | 35.0% |
| ! | GCTTTTTGTGTGACTGTAAA+TGG | - | chr5.4:17927014-17927033 | MS.gene070103:intron | 35.0% |
| !! | GGCTCTAAAAGTTAACATTG+TGG | - | chr5.4:17926784-17926803 | MS.gene070103:intron | 35.0% |
| !!! | GACGTTGTTTTTTGTAGTTG+GGG | - | chr5.4:17925536-17925555 | MS.gene070103:CDS | 35.0% |
| !!! | GGACGTTGTTTTTTGTAGTT+GGG | - | chr5.4:17925535-17925554 | MS.gene070103:CDS | 35.0% |
| AAATCGGCTGGAAAGTTGTT+TGG | + | chr5.4:17927696-17927715 | None:intergenic | 40.0% | |
| AACATCACATAAAGGTCTCG+AGG | - | chr5.4:17927599-17927618 | MS.gene070103:intron | 40.0% | |
| ACATCACATAAAGGTCTCGA+GGG | - | chr5.4:17927600-17927619 | MS.gene070103:intron | 40.0% | |
| ACCAGATGGTTGCAAGATTA+AGG | - | chr5.4:17927791-17927810 | MS.gene070103:CDS | 40.0% | |
| ACTACAAAAAACAACGTCCC+CGG | + | chr5.4:17925534-17925553 | None:intergenic | 40.0% | |
| AGTATTCATGCCTAAACCTG+AGG | + | chr5.4:17926338-17926357 | None:intergenic | 40.0% | |
| ATAGTCCTATTTGGAAGACG+AGG | + | chr5.4:17927641-17927660 | None:intergenic | 40.0% | |
| ATGAATGACTTTGAGCACTC+GGG | - | chr5.4:17925771-17925790 | MS.gene070103:CDS | 40.0% | |
| CACCACCAACAATTATCTTG+AGG | + | chr5.4:17925734-17925753 | None:intergenic | 40.0% | |
| CACCTCAAGATAATTGTTGG+TGG | - | chr5.4:17925729-17925748 | MS.gene070103:CDS | 40.0% | |
| CTCCAATAAGTCCATGTTGT+AGG | - | chr5.4:17926755-17926774 | MS.gene070103:intron | 40.0% | |
| CTCTACTTAGCGAAAAAACC+AGG | - | chr5.4:17925829-17925848 | MS.gene070103:CDS | 40.0% | |
| CTGGAAAGTTGTTTGGAAGA+AGG | + | chr5.4:17927689-17927708 | None:intergenic | 40.0% | |
| GAGCAATAGATGAACTAACC+TGG | + | chr5.4:17925850-17925869 | None:intergenic | 40.0% | |
| GAGCTCTATGTTGTTGCAAT+TGG | - | chr5.4:17925666-17925685 | MS.gene070103:CDS | 40.0% | |
| TCCTTAATCTTGCAACCATC+TGG | + | chr5.4:17927795-17927814 | None:intergenic | 40.0% | |
| TGATGGGAGGCTAAAATACT+TGG | - | chr5.4:17925644-17925663 | MS.gene070103:CDS | 40.0% | |
| TGCAACCATCTGGTATCATA+GGG | + | chr5.4:17927785-17927804 | None:intergenic | 40.0% | |
| TGCAACTGAATTGTGTGTCA+AGG | + | chr5.4:17926200-17926219 | None:intergenic | 40.0% | |
| TGCCTACAACATGGACTTAT+TGG | + | chr5.4:17926760-17926779 | None:intergenic | 40.0% | |
| TTGCAACCATCTGGTATCAT+AGG | + | chr5.4:17927786-17927805 | None:intergenic | 40.0% | |
| TTTATGTTTCCTAGCTGCCA+TGG | - | chr5.4:17927539-17927558 | MS.gene070103:intron | 40.0% | |
| ! | TTTCCAGCCGATTTATGCAA+CGG | - | chr5.4:17927702-17927721 | MS.gene070103:CDS | 40.0% |
| !! | TCTAGACGGTGTTGTCAATT+GGG | - | chr5.4:17926035-17926054 | MS.gene070103:intron | 40.0% |
| !! | TTCTAGACGGTGTTGTCAAT+TGG | - | chr5.4:17926034-17926053 | MS.gene070103:intron | 40.0% |
| !!! | GGGACGTTGTTTTTTGTAGT+TGG | - | chr5.4:17925534-17925553 | MS.gene070103:CDS | 40.0% |
| !!! | TGTTTTTTGTAGTTGGGGTG+TGG | - | chr5.4:17925541-17925560 | MS.gene070103:CDS | 40.0% |
| ACCAACAAGAACCGAAAGGA+TGG | + | chr5.4:17927892-17927911 | None:intergenic | 45.0% | |
| AGCGATGCCGTTGCATAAAT+CGG | + | chr5.4:17927712-17927731 | None:intergenic | 45.0% | |
| AGTCCATGTTGTAGGCAGTT+TGG | - | chr5.4:17926763-17926782 | MS.gene070103:intron | 45.0% | |
| AGTTGGGGTGTGGCATATTT+GGG | - | chr5.4:17925551-17925570 | MS.gene070103:CDS | 45.0% | |
| ATCGGATGAAATGGATGCGA+AGG | + | chr5.4:17926479-17926498 | None:intergenic | 45.0% | |
| CAGTACCAACAAGAACCGAA+AGG | + | chr5.4:17927896-17927915 | None:intergenic | 45.0% | |
| CCACAGTACATCGGATGAAA+TGG | + | chr5.4:17926488-17926507 | None:intergenic | 45.0% | |
| CCATTTCATCCGATGTACTG+TGG | - | chr5.4:17926485-17926504 | MS.gene070103:intron | 45.0% | |
| CGCTATAGCACTGTGAACAA+CGG | + | chr5.4:17926076-17926095 | None:intergenic | 45.0% | |
| GCTCTTTGTTGCCATCCTTT+CGG | - | chr5.4:17927878-17927897 | MS.gene070103:CDS | 45.0% | |
| GGAGAATAGAAGATACTCGG+CGG | + | chr5.4:17927571-17927590 | None:intergenic | 45.0% | |
| GGTTGACAATACTCTGACGT+GGG | - | chr5.4:17926289-17926308 | MS.gene070103:intron | 45.0% | |
| TAGTTGGGGTGTGGCATATT+TGG | - | chr5.4:17925550-17925569 | MS.gene070103:CDS | 45.0% | |
| TATGGATGGACCTCAGGTTT+AGG | - | chr5.4:17926325-17926344 | MS.gene070103:intron | 45.0% | |
| TATGGCCCTATGATACCAGA+TGG | - | chr5.4:17927777-17927796 | MS.gene070103:CDS | 45.0% | |
| TCAGTTGACAGTGAGATTCG+CGG | - | chr5.4:17927834-17927853 | MS.gene070103:CDS | 45.0% | |
| TCCTATTTGGAAGACGAGGA+GGG | + | chr5.4:17927637-17927656 | None:intergenic | 45.0% | |
| TCGGATGAAATGGATGCGAA+GGG | + | chr5.4:17926478-17926497 | None:intergenic | 45.0% | |
| TGAATGACTTTGAGCACTCG+GGG | - | chr5.4:17925772-17925791 | MS.gene070103:CDS | 45.0% | |
| TGCAGCGGCAACAACAAATA+CGG | + | chr5.4:17926849-17926868 | None:intergenic | 45.0% | |
| TGGTTGACAATACTCTGACG+TGG | - | chr5.4:17926288-17926307 | MS.gene070103:intron | 45.0% | |
| TTTAGCCTCCCATCAAAACC+CGG | + | chr5.4:17925639-17925658 | None:intergenic | 45.0% | |
| TTTCAAGGGTCATGCTTTGC+CGG | - | chr5.4:17925512-17925531 | MS.gene070103:CDS | 45.0% | |
| !! | AATCCTGTACCGGGTTTTGA+TGG | - | chr5.4:17925627-17925646 | MS.gene070103:CDS | 45.0% |
| !! | ATCCTGTACCGGGTTTTGAT+GGG | - | chr5.4:17925628-17925647 | MS.gene070103:CDS | 45.0% |
| !! | CTAGACGGTGTTGTCAATTG+GGG | - | chr5.4:17926036-17926055 | MS.gene070103:intron | 45.0% |
| !!! | TTTTTTCTTTTTTTTTTTTT+TGG | + | chr5.4:17927105-17927124 | None:intergenic | 5.0% |
| ACCCTCCTCGTCTTCCAAAT+AGG | - | chr5.4:17927633-17927652 | MS.gene070103:intron | 50.0% | |
| ATACTCGGCGGAAAATGCCA+TGG | + | chr5.4:17927559-17927578 | None:intergenic | 50.0% | |
| ATGCCGTTGCATAAATCGGC+TGG | + | chr5.4:17927708-17927727 | None:intergenic | 50.0% | |
| CTGTAGTATGGATGGACCTC+AGG | - | chr5.4:17926319-17926338 | MS.gene070103:intron | 50.0% | |
| CTTTAGCGCTGCAAGGCATA+TGG | - | chr5.4:17927730-17927749 | MS.gene070103:CDS | 50.0% | |
| GACCTCCTCTGTAGTATGGA+TGG | - | chr5.4:17926311-17926330 | MS.gene070103:intron | 50.0% | |
| GAGCCAAACTGCCTACAACA+TGG | + | chr5.4:17926769-17926788 | None:intergenic | 50.0% | |
| GAGGTCCATCCATACTACAG+AGG | + | chr5.4:17926319-17926338 | None:intergenic | 50.0% | |
| GCCATCCTTTCGGTTCTTGT+TGG | - | chr5.4:17927888-17927907 | MS.gene070103:CDS | 50.0% | |
| GCTCGAACACGAAACGTCTT+AGG | + | chr5.4:17925603-17925622 | None:intergenic | 50.0% | |
| GTCCATCCATACTACAGAGG+AGG | + | chr5.4:17926316-17926335 | None:intergenic | 50.0% | |
| GTCCTATTTGGAAGACGAGG+AGG | + | chr5.4:17927638-17927657 | None:intergenic | 50.0% | |
| GTTGTTTGGAAGAAGGGCTC+CGG | + | chr5.4:17927682-17927701 | None:intergenic | 50.0% | |
| TTCAAGGGTCATGCTTTGCC+GGG | - | chr5.4:17925513-17925532 | MS.gene070103:CDS | 50.0% | |
| AGACGTTTCGTGTTCGAGCG+TGG | - | chr5.4:17925604-17925623 | MS.gene070103:CDS | 55.0% | |
| CGGAAAATGCCATGGCAGCT+AGG | + | chr5.4:17927551-17927570 | None:intergenic | 55.0% | |
| CTCCCATCAAAACCCGGTAC+AGG | + | chr5.4:17925633-17925652 | None:intergenic | 55.0% | |
| GTGGGACCTCCTCTGTAGTA+TGG | - | chr5.4:17926307-17926326 | MS.gene070103:intron | 55.0% | |
| TCAAGGGTCATGCTTTGCCG+GGG | - | chr5.4:17925514-17925533 | MS.gene070103:CDS | 55.0% | |
| TCGAGCGTGGAATCCTGTAC+CGG | - | chr5.4:17925617-17925636 | MS.gene070103:CDS | 55.0% | |
| TTTGGAAGACGAGGAGGGTG+TGG | + | chr5.4:17927632-17927651 | None:intergenic | 55.0% | |
| !! | CTGTACCGGGTTTTGATGGG+AGG | - | chr5.4:17925631-17925650 | MS.gene070103:CDS | 55.0% |
| CGAGCGTGGAATCCTGTACC+GGG | - | chr5.4:17925618-17925637 | MS.gene070103:CDS | 60.0% | |
| GGCATCGCTTTAGCGCTGCA+AGG | - | chr5.4:17927723-17927742 | MS.gene070103:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17925504 | 17928004 | 17925504 | ID=MS.gene070103 |
| chr5.4 | mRNA | 17925504 | 17928004 | 17925504 | ID=MS.gene070103.t1;Parent=MS.gene070103 |
| chr5.4 | exon | 17927658 | 17928004 | 17927658 | ID=MS.gene070103.t1.exon1;Parent=MS.gene070103.t1 |
| chr5.4 | CDS | 17927658 | 17928004 | 17927658 | ID=cds.MS.gene070103.t1;Parent=MS.gene070103.t1 |
| chr5.4 | exon | 17925504 | 17925993 | 17925504 | ID=MS.gene070103.t1.exon2;Parent=MS.gene070103.t1 |
| chr5.4 | CDS | 17925504 | 17925993 | 17925504 | ID=cds.MS.gene070103.t1;Parent=MS.gene070103.t1 |
| Gene Sequence |
| Protein sequence |
