AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05985


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05985.t1 MTR_8g102470 97.626 337 3 2 1 337 1 332 0.0 661
MS.gene05985.t1 MTR_8g102470 99.351 308 2 0 30 337 1 308 0.0 619
MS.gene05985.t1 MTR_8g088900 49.000 300 147 3 34 328 7 305 3.74e-95 287
MS.gene05985.t1 MTR_2g099910 30.195 308 207 3 25 325 24 330 1.74e-40 145
MS.gene05985.t1 MTR_8g028120 31.557 244 164 3 42 284 2 243 1.26e-36 133
MS.gene05985.t1 MTR_2g099910 31.004 229 150 3 25 246 24 251 3.59e-29 113
MS.gene05985.t1 MTR_6g069685 27.742 310 217 4 33 336 315 623 1.20e-24 105
MS.gene05985.t1 MTR_6g069685 23.986 296 216 6 43 332 7 299 4.82e-14 73.6
MS.gene05985.t1 MTR_2g030400 25.904 332 212 8 3 307 1 325 8.74e-24 100
MS.gene05985.t1 MTR_2g099910 31.959 194 124 3 25 211 24 216 2.62e-23 97.1
MS.gene05985.t1 MTR_2g030400 25.610 328 210 8 3 303 1 321 1.77e-22 96.3
MS.gene05985.t1 MTR_2g030400 26.812 276 175 6 3 258 1 269 1.87e-19 87.4
MS.gene05985.t1 MTR_2g030400 27.953 254 156 6 3 236 1 247 2.28e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05985.t1 AT4G29120 72.141 341 80 2 1 335 1 332 6.85e-180 501
MS.gene05985.t1 AT1G71180 48.684 304 147 3 30 331 22 318 5.73e-84 257
MS.gene05985.t1 AT1G71170 46.711 304 155 3 30 331 1 299 1.09e-80 248
MS.gene05985.t1 AT1G17650 29.664 327 221 4 6 325 27 351 4.50e-41 147
MS.gene05985.t1 AT1G17650 30.986 284 194 2 43 325 10 292 1.74e-40 144
MS.gene05985.t1 AT3G25530 30.249 281 194 2 42 321 2 281 1.80e-37 136
MS.gene05985.t1 AT3G25530 28.826 281 187 2 42 321 2 270 4.16e-34 127
MS.gene05985.t1 AT3G25530 33.498 203 133 2 42 243 2 203 5.82e-31 116
MS.gene05985.t1 AT4G20930 29.210 291 181 7 43 311 40 327 7.71e-28 111
MS.gene05985.t1 AT1G18270 26.603 312 220 4 25 332 310 616 1.72e-23 102
MS.gene05985.t1 AT1G18270 21.034 290 221 5 43 327 5 291 6.07e-12 67.4
MS.gene05985.t1 AT1G18270 26.603 312 220 4 25 332 310 616 2.17e-23 102
MS.gene05985.t1 AT1G18270 21.034 290 221 5 43 327 5 291 6.97e-12 67.0
MS.gene05985.t1 AT1G18270 26.603 312 220 4 25 332 310 616 2.26e-23 101
MS.gene05985.t1 AT1G18270 21.034 290 221 5 43 327 5 291 8.25e-12 67.0
MS.gene05985.t1 AT1G18270 26.603 312 220 4 25 332 311 617 2.26e-23 101
MS.gene05985.t1 AT4G20930 28.063 253 157 7 81 311 6 255 2.99e-20 89.4

Find 136 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCATGGTGAAGGTAATT+TGG 0.154817 4.3:+2974609 MS.gene05985:CDS
GGGTACTCAGGCTCTTATTT+TGG 0.213438 4.3:+2974630 MS.gene05985:CDS
GCGGGTGTTTGATGGGGTTA+TGG 0.236145 4.3:-2973789 None:intergenic
TTTGAAAGAATGTGAGAAAA+TGG 0.246727 4.3:+2974534 MS.gene05985:CDS
CCGGCGAGTGCGCCGGTGTT+TGG 0.261173 4.3:-2974034 None:intergenic
TCAATCGACGCTCCCGTTTC+CGG 0.279408 4.3:+2974151 MS.gene05985:CDS
CTGGATCGGCACCGGCGTAA+TGG 0.282706 4.3:+2973817 MS.gene05985:CDS
CAGCCCAGGCGGGTGTTTGA+TGG 0.285087 4.3:-2973797 None:intergenic
CGGGTGTTTGATGGGGTTAT+GGG 0.288686 4.3:-2973788 None:intergenic
TCCCTAAATCCTTCACAAAA+TGG 0.292923 4.3:-2974507 None:intergenic
CGGCGAGTGCGCCGGTGTTT+GGG 0.329981 4.3:-2974033 None:intergenic
GTCGAGGAGTGGTTGGGCTT+TGG 0.338068 4.3:-2973906 None:intergenic
CATTCTCACCCGCCACTTCA+TGG 0.353626 4.3:+2973754 MS.gene05985:CDS
TGGATCGGCACCGGCGTAAT+GGG 0.358966 4.3:+2973818 MS.gene05985:CDS
GTTTGATGGGGTTATGGGCT+CGG 0.365692 4.3:-2973783 None:intergenic
GGAGTGGTTGGGCTTTGGAG+GGG 0.366756 4.3:-2973901 None:intergenic
GAGTGGTTGGGCTTTGGAGG+GGG 0.366905 4.3:-2973900 None:intergenic
GAGGAGTGGTTGGGCTTTGG+AGG 0.376743 4.3:-2973903 None:intergenic
AGCCCAGGCGGGTGTTTGAT+GGG 0.383843 4.3:-2973796 None:intergenic
GCTCATGGTGAAGGTAATTT+GGG 0.387757 4.3:+2974610 MS.gene05985:CDS
GGGTATTGCTTTGCCTGGTT+TGG 0.390445 4.3:+2974555 MS.gene05985:CDS
ACAGCTTTATGTGTCTCTTA+AGG 0.398105 4.3:+2974588 MS.gene05985:CDS
GCCACGGTCTCCACCGGAAA+CGG 0.412055 4.3:-2974164 None:intergenic
CATCAAACACCCGCCTGGGC+TGG 0.416712 4.3:+2973798 MS.gene05985:CDS
AACCCCATCAAACACCCGCC+TGG 0.417289 4.3:+2973793 MS.gene05985:CDS
TGGGGTTATGGGCTCGGAGG+TGG 0.424426 4.3:-2973777 None:intergenic
ACTTGATGTAGGGTTGTATC+TGG 0.426394 4.3:+2974390 MS.gene05985:CDS
TCGAAATCGCTTGAGTTGTA+TGG 0.429219 4.3:+2974439 MS.gene05985:CDS
GCAATTTCGACGGGTGCGGC+TGG 0.432079 4.3:+2974415 MS.gene05985:CDS
CGCCGATGTCGAGGAGTGGT+TGG 0.432520 4.3:-2973913 None:intergenic
GGATTGTGATGCGACGGCGT+GGG 0.436919 4.3:-2973954 None:intergenic
CCACGGTCTCCACCGGAAAC+GGG 0.438644 4.3:-2974163 None:intergenic
AGGAGTGGTTGGGCTTTGGA+GGG 0.441675 4.3:-2973902 None:intergenic
AGTGGCTGATGCGGCGGTAG+AGG 0.445083 4.3:-2973715 None:intergenic
TTCAACAATGGTAGGGTTAG+TGG 0.453377 4.3:+2974339 MS.gene05985:CDS
TGAGATGGGCGCACATGGAT+TGG 0.459719 4.3:-2973841 None:intergenic
TGCGCCCATCTCATCCGTTC+CGG 0.464896 4.3:+2973851 MS.gene05985:CDS
GAAGACGGTGAGGGTGTAAC+CGG 0.466194 4.3:-2973870 None:intergenic
GATTGTGATGCGACGGCGTG+GGG 0.468193 4.3:-2973953 None:intergenic
TACATGGGAACTAGCGGAAA+AGG 0.469512 4.3:+2974280 MS.gene05985:CDS
CACGATTGATTCATCTCCAC+CGG 0.470291 4.3:-2974215 None:intergenic
CGCCTGGGCTGGATCGGCAC+CGG 0.472143 4.3:+2973809 MS.gene05985:CDS
ACGATAGCTTCAACAATGGT+AGG 0.474726 4.3:+2974331 MS.gene05985:CDS
AACACCCGCCTGGGCTGGAT+CGG 0.475780 4.3:+2973803 MS.gene05985:CDS
GCCGATGTCGAGGAGTGGTT+GGG 0.478660 4.3:-2973912 None:intergenic
GGAGACCGTGGCGCAAAGAA+TGG 0.480378 4.3:+2974175 MS.gene05985:CDS
TATGTGTCTCTTAAGGCTCA+TGG 0.483295 4.3:+2974595 MS.gene05985:CDS
CGGAGGTGGCCATGAAGTGG+CGG 0.483903 4.3:-2973763 None:intergenic
TTGAAAGAATGTGAGAAAAT+GGG 0.490579 4.3:+2974535 MS.gene05985:CDS
GCACTCGCCGGTCTCAAATC+CGG 0.490972 4.3:+2974046 MS.gene05985:CDS
TGTTTCTCTTCCACCTTCTG+TGG 0.492236 4.3:+2974672 MS.gene05985:CDS
GTGCGCCGGTGTTTGGGTCG+AGG 0.495329 4.3:-2974027 None:intergenic
CTCCACCGGCGAAGATTGCT+AGG 0.501858 4.3:-2974201 None:intergenic
GCCCAGGCGGGTGTTTGATG+GGG 0.515820 4.3:-2973795 None:intergenic
ACCCCATCAAACACCCGCCT+GGG 0.517433 4.3:+2973794 MS.gene05985:CDS
CTTTGCGCCACGGTCTCCAC+CGG 0.519012 4.3:-2974170 None:intergenic
GGATGCAATTTCGACGGGTG+CGG 0.521188 4.3:+2974411 MS.gene05985:CDS
TGAGGAGGTGAGTGTGAGAG+TGG 0.521698 4.3:-2973733 None:intergenic
GGGTGCCATTCTTTGCGCCA+CGG 0.523853 4.3:-2974180 None:intergenic
TGTAACCGGAACGGATGAGA+TGG 0.525879 4.3:-2973856 None:intergenic
TTGTGATGCGACGGCGTGGG+GGG 0.527594 4.3:-2973951 None:intergenic
CGCCGGTGCCGATCCAGCCC+AGG 0.529107 4.3:-2973811 None:intergenic
GGTGTTTGGGTCGAGGAGGA+CGG 0.532059 4.3:-2974020 None:intergenic
TGAAGTGGCGGGTGAGAATG+AGG 0.533969 4.3:-2973751 None:intergenic
AAAATGGGTATTGCTTTGCC+TGG 0.535454 4.3:+2974550 MS.gene05985:CDS
GTATCTGGATGCAATTTCGA+CGG 0.537538 4.3:+2974405 MS.gene05985:CDS
ACGGATGAGATGGGCGCACA+TGG 0.540422 4.3:-2973846 None:intergenic
TTTGAGACCGGCGAGTGCGC+CGG 0.541946 4.3:-2974041 None:intergenic
GCTCGGAGGTGGCCATGAAG+TGG 0.545180 4.3:-2973766 None:intergenic
CGAGGGTGGCGCCGATGTCG+AGG 0.546061 4.3:-2973922 None:intergenic
TGATGCGGCGGTAGAGGGAA+CGG 0.546234 4.3:-2973709 None:intergenic
AGGACGGATCGAACGTCGGA+GGG 0.546487 4.3:-2974004 None:intergenic
GATAACGATAGCTTCAACAA+TGG 0.552492 4.3:+2974327 MS.gene05985:CDS
TGAAGGTAATTTGGGTACTC+AGG 0.552977 4.3:+2974618 MS.gene05985:CDS
CACAAAGCGGGACTTGATGT+AGG 0.553732 4.3:+2974379 MS.gene05985:CDS
CCAAACACCGGCGCACTCGC+CGG 0.553830 4.3:+2974034 MS.gene05985:CDS
GGTGCCGATCCAGCCCAGGC+GGG 0.557386 4.3:-2973807 None:intergenic
GAGGACGGATCGAACGTCGG+AGG 0.559400 4.3:-2974005 None:intergenic
TCTCTTAAGGCTCATGGTGA+AGG 0.559680 4.3:+2974601 MS.gene05985:CDS
GGTGCGGTTGAAGACGGTGA+GGG 0.559737 4.3:-2973879 None:intergenic
GATGCCACCGGATTTGAGAC+CGG 0.562962 4.3:-2974053 None:intergenic
GCGATTTCGACGGCGAGGGA+AGG 0.563490 4.3:-2974100 None:intergenic
GGAGGTGGCCATGAAGTGGC+GGG 0.565150 4.3:-2973762 None:intergenic
TATCTGGATGCAATTTCGAC+GGG 0.565278 4.3:+2974406 MS.gene05985:CDS
CGGATTGTGATGCGACGGCG+TGG 0.568717 4.3:-2973955 None:intergenic
TGTTGAGCAAGTGCCAAACC+AGG 0.570957 4.3:-2974568 None:intergenic
GTGGCTGATGCGGCGGTAGA+GGG 0.573471 4.3:-2973714 None:intergenic
GACGGCGAGGGAAGGATCTG+AGG 0.573970 4.3:-2974092 None:intergenic
ATGGTGTATGCACACAAAGC+GGG 0.574320 4.3:+2974367 MS.gene05985:CDS
TGCAGCGTCGGCGATTTCGA+CGG 0.575228 4.3:-2974110 None:intergenic
CAATGGTAGGGTTAGTGGAA+GGG 0.575951 4.3:+2974344 MS.gene05985:CDS
CCCGTTTCCGGTGGAGACCG+TGG 0.577236 4.3:+2974163 MS.gene05985:CDS
CATGTCAACGAGGATGCCAC+CGG 0.578295 4.3:-2974065 None:intergenic
ATCGACGCTCCCGTTTCCGG+TGG 0.581064 4.3:+2974154 MS.gene05985:CDS
ACAATGGTAGGGTTAGTGGA+AGG 0.583861 4.3:+2974343 MS.gene05985:CDS
TGGTAAGAGAATTCTGAAGA+GGG 0.585420 4.3:+2974459 MS.gene05985:CDS
CATGGATTGGCCCATTACGC+CGG 0.585916 4.3:-2973828 None:intergenic
GGTAGGGTTAGTGGAAGGGA+TGG 0.586755 4.3:+2974348 MS.gene05985:CDS
GTAACCGGAACGGATGAGAT+GGG 0.590915 4.3:-2973855 None:intergenic
TGATTTCATACCACAGAAGG+TGG 0.591447 4.3:-2974682 None:intergenic
CGGAAACGTAGGAATGGAAG+TGG 0.592269 4.3:-2973689 None:intergenic
CGGTGCCGATCCAGCCCAGG+CGG 0.593100 4.3:-2973808 None:intergenic
CGATAGCTTCAACAATGGTA+GGG 0.594033 4.3:+2974332 MS.gene05985:CDS
GCCCAACCACTCCTCGACAT+CGG 0.595927 4.3:+2973911 MS.gene05985:CDS
ATTGTGATGCGACGGCGTGG+GGG 0.599351 4.3:-2973952 None:intergenic
AGGGAACGGAAACGTAGGAA+TGG 0.604772 4.3:-2973695 None:intergenic
GAATGATTTCATACCACAGA+AGG 0.605162 4.3:-2974685 None:intergenic
TTCCCCAATGATGAAAACAA+TGG 0.611373 4.3:-2974250 None:intergenic
ACAAAGCGGGACTTGATGTA+GGG 0.611508 4.3:+2974380 MS.gene05985:CDS
GTCCTCCTCGACCCAAACAC+CGG 0.611555 4.3:+2974022 MS.gene05985:CDS
GGCACCCTAGCAATCTTCGC+CGG 0.613387 4.3:+2974196 MS.gene05985:CDS
GTGGCGCCGATGTCGAGGAG+TGG 0.618486 4.3:-2973917 None:intergenic
GGGTGCGGTTGAAGACGGTG+AGG 0.619880 4.3:-2973880 None:intergenic
GTCGGCGATTTCGACGGCGA+GGG 0.623638 4.3:-2974104 None:intergenic
GGACGGATCGAACGTCGGAG+GGG 0.625313 4.3:-2974003 None:intergenic
CTCGCCGGTCTCAAATCCGG+TGG 0.625923 4.3:+2974049 MS.gene05985:CDS
ATGGTAAGAGAATTCTGAAG+AGG 0.627122 4.3:+2974458 MS.gene05985:CDS
CGTCGGCGATTTCGACGGCG+AGG 0.628317 4.3:-2974105 None:intergenic
GACGTCGGATTGTGATGCGA+CGG 0.628555 4.3:-2973960 None:intergenic
ACCCTAGCAATCTTCGCCGG+TGG 0.629709 4.3:+2974199 MS.gene05985:CDS
GAGTGTGAGAGTGGCTGATG+CGG 0.630259 4.3:-2973724 None:intergenic
ATTGGGGAAAGTGAACTACA+TGG 0.635633 4.3:+2974264 MS.gene05985:CDS
TGATGGGGTTATGGGCTCGG+AGG 0.636250 4.3:-2973780 None:intergenic
TGTGAGAGTGGCTGATGCGG+CGG 0.637898 4.3:-2973721 None:intergenic
GTCGGAGGGGTAACCAACGA+TGG 0.641353 4.3:-2973990 None:intergenic
CGCCGGTGTTTGGGTCGAGG+AGG 0.641635 4.3:-2974024 None:intergenic
GTGAACTACATGGGAACTAG+CGG 0.652338 4.3:+2974274 MS.gene05985:CDS
TCCACCGGCGAAGATTGCTA+GGG 0.664093 4.3:-2974200 None:intergenic
CGGTGAGGGTGTAACCGGAA+CGG 0.665734 4.3:-2973865 None:intergenic
GATGGTGTATGCACACAAAG+CGG 0.671363 4.3:+2974366 MS.gene05985:CDS
TTGGGGAAAGTGAACTACAT+GGG 0.676398 4.3:+2974265 MS.gene05985:CDS
GAGGAGGACGGATCGAACGT+CGG 0.678301 4.3:-2974008 None:intergenic
GGTAGAGGGAACGGAAACGT+AGG 0.693719 4.3:-2973700 None:intergenic
AACGATGGAGAAAACGACGT+CGG 0.717582 4.3:-2973975 None:intergenic
CTGAGGTTGTCATGTCAACG+AGG 0.717734 4.3:-2974075 None:intergenic
AGTGGCGGGTGAGAATGAGG+AGG 0.762010 4.3:-2973748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTGAAAGAATGTGAGAAAAT+GGG + chr4.3:2974535-2974554 MS.gene05985:CDS 25.0%
! TTTGAAAGAATGTGAGAAAA+TGG + chr4.3:2974534-2974553 MS.gene05985:CDS 25.0%
! AACCATTTTGTGAAGGATTT+AGG + chr4.3:2974505-2974524 MS.gene05985:CDS 30.0%
! ACCATTTTGTGAAGGATTTA+GGG + chr4.3:2974506-2974525 MS.gene05985:CDS 30.0%
! TCTCCATTGTTTTCATCATT+GGG + chr4.3:2974247-2974266 MS.gene05985:CDS 30.0%
! TTATGTGAACCATTTTGTGA+AGG + chr4.3:2974498-2974517 MS.gene05985:CDS 30.0%
! TTCTCCATTGTTTTCATCAT+TGG + chr4.3:2974246-2974265 MS.gene05985:CDS 30.0%
GATAACGATAGCTTCAACAA+TGG + chr4.3:2974327-2974346 MS.gene05985:CDS 35.0%
TCCCTAAATCCTTCACAAAA+TGG - chr4.3:2974510-2974529 None:intergenic 35.0%
TTCCCCAATGATGAAAACAA+TGG - chr4.3:2974253-2974272 None:intergenic 35.0%
! ACAGCTTTATGTGTCTCTTA+AGG + chr4.3:2974588-2974607 MS.gene05985:CDS 35.0%
! ATGGTAAGAGAATTCTGAAG+AGG + chr4.3:2974458-2974477 MS.gene05985:CDS 35.0%
! CTCCATTGTTTTCATCATTG+GGG + chr4.3:2974248-2974267 MS.gene05985:CDS 35.0%
! TGGTAAGAGAATTCTGAAGA+GGG + chr4.3:2974459-2974478 MS.gene05985:CDS 35.0%
ACGATAGCTTCAACAATGGT+AGG + chr4.3:2974331-2974350 MS.gene05985:CDS 40.0%
ACTTGATGTAGGGTTGTATC+TGG + chr4.3:2974390-2974409 MS.gene05985:CDS 40.0%
ATTGGGGAAAGTGAACTACA+TGG + chr4.3:2974264-2974283 MS.gene05985:CDS 40.0%
CGATAGCTTCAACAATGGTA+GGG + chr4.3:2974332-2974351 MS.gene05985:CDS 40.0%
GCTCATGGTGAAGGTAATTT+GGG + chr4.3:2974610-2974629 MS.gene05985:CDS 40.0%
GTATCTGGATGCAATTTCGA+CGG + chr4.3:2974405-2974424 MS.gene05985:CDS 40.0%
TATCTGGATGCAATTTCGAC+GGG + chr4.3:2974406-2974425 MS.gene05985:CDS 40.0%
TATGTGTCTCTTAAGGCTCA+TGG + chr4.3:2974595-2974614 MS.gene05985:CDS 40.0%
TGAAGGTAATTTGGGTACTC+AGG + chr4.3:2974618-2974637 MS.gene05985:CDS 40.0%
TTCAACAATGGTAGGGTTAG+TGG + chr4.3:2974339-2974358 MS.gene05985:CDS 40.0%
TTGGGGAAAGTGAACTACAT+GGG + chr4.3:2974265-2974284 MS.gene05985:CDS 40.0%
! AAAATGGGTATTGCTTTGCC+TGG + chr4.3:2974550-2974569 MS.gene05985:CDS 40.0%
! TCGAAATCGCTTGAGTTGTA+TGG + chr4.3:2974439-2974458 MS.gene05985:CDS 40.0%
!! GTTTTTAACTGATGCAGCGT+CGG - chr4.3:2974125-2974144 None:intergenic 40.0%
!!! TGAAGAGGGATTTTGAAGCA+GGG + chr4.3:2974473-2974492 MS.gene05985:CDS 40.0%
AACGATGGAGAAAACGACGT+CGG - chr4.3:2973978-2973997 None:intergenic 45.0%
ACAAAGCGGGACTTGATGTA+GGG + chr4.3:2974380-2974399 MS.gene05985:CDS 45.0%
ATGGTGTATGCACACAAAGC+GGG + chr4.3:2974367-2974386 MS.gene05985:CDS 45.0%
GATGGTGTATGCACACAAAG+CGG + chr4.3:2974366-2974385 MS.gene05985:CDS 45.0%
GGCTCATGGTGAAGGTAATT+TGG + chr4.3:2974609-2974628 MS.gene05985:CDS 45.0%
GTGAACTACATGGGAACTAG+CGG + chr4.3:2974274-2974293 MS.gene05985:CDS 45.0%
TACATGGGAACTAGCGGAAA+AGG + chr4.3:2974280-2974299 MS.gene05985:CDS 45.0%
TCTCTTAAGGCTCATGGTGA+AGG + chr4.3:2974601-2974620 MS.gene05985:CDS 45.0%
TGTTTCTCTTCCACCTTCTG+TGG + chr4.3:2974672-2974691 MS.gene05985:CDS 45.0%
! ACAATGGTAGGGTTAGTGGA+AGG + chr4.3:2974343-2974362 MS.gene05985:CDS 45.0%
! CAATGGTAGGGTTAGTGGAA+GGG + chr4.3:2974344-2974363 MS.gene05985:CDS 45.0%
! CACGATTGATTCATCTCCAC+CGG - chr4.3:2974218-2974237 None:intergenic 45.0%
!! GGGTACTCAGGCTCTTATTT+TGG + chr4.3:2974630-2974649 MS.gene05985:CDS 45.0%
!!! CTGAAGAGGGATTTTGAAGC+AGG + chr4.3:2974472-2974491 MS.gene05985:CDS 45.0%
AGGGAACGGAAACGTAGGAA+TGG - chr4.3:2973698-2973717 None:intergenic 50.0%
CACAAAGCGGGACTTGATGT+AGG + chr4.3:2974379-2974398 MS.gene05985:CDS 50.0%
CGGAAACGTAGGAATGGAAG+TGG - chr4.3:2973692-2973711 None:intergenic 50.0%
CGGGTGTTTGATGGGGTTAT+GGG - chr4.3:2973791-2973810 None:intergenic 50.0%
CTGAGGTTGTCATGTCAACG+AGG - chr4.3:2974078-2974097 None:intergenic 50.0%
GTAACCGGAACGGATGAGAT+GGG - chr4.3:2973858-2973877 None:intergenic 50.0%
GTTTGATGGGGTTATGGGCT+CGG - chr4.3:2973786-2973805 None:intergenic 50.0%
TGTAACCGGAACGGATGAGA+TGG - chr4.3:2973859-2973878 None:intergenic 50.0%
TGTTGAGCAAGTGCCAAACC+AGG - chr4.3:2974571-2974590 None:intergenic 50.0%
! GGGTATTGCTTTGCCTGGTT+TGG + chr4.3:2974555-2974574 MS.gene05985:CDS 50.0%
!! GACGTCGTTTTCTCCATCGT+TGG + chr4.3:2973977-2973996 MS.gene05985:CDS 50.0%
CATGTCAACGAGGATGCCAC+CGG - chr4.3:2974068-2974087 None:intergenic 55.0%
CATTCTCACCCGCCACTTCA+TGG + chr4.3:2973754-2973773 MS.gene05985:CDS 55.0%
GACGTCGGATTGTGATGCGA+CGG - chr4.3:2973963-2973982 None:intergenic 55.0%
GAGTGTGAGAGTGGCTGATG+CGG - chr4.3:2973727-2973746 None:intergenic 55.0%
GCGGGTGTTTGATGGGGTTA+TGG - chr4.3:2973792-2973811 None:intergenic 55.0%
GGATGCAATTTCGACGGGTG+CGG + chr4.3:2974411-2974430 MS.gene05985:CDS 55.0%
GGTAGAGGGAACGGAAACGT+AGG - chr4.3:2973703-2973722 None:intergenic 55.0%
TCAATCGACGCTCCCGTTTC+CGG + chr4.3:2974151-2974170 MS.gene05985:CDS 55.0%
TCCACCGGCGAAGATTGCTA+GGG - chr4.3:2974203-2974222 None:intergenic 55.0%
TGAGATGGGCGCACATGGAT+TGG - chr4.3:2973844-2973863 None:intergenic 55.0%
TGAGGAGGTGAGTGTGAGAG+TGG - chr4.3:2973736-2973755 None:intergenic 55.0%
! GAAGACGGTGAGGGTGTAAC+CGG - chr4.3:2973873-2973892 None:intergenic 55.0%
! GATGCCACCGGATTTGAGAC+CGG - chr4.3:2974056-2974075 None:intergenic 55.0%
! GGTAGGGTTAGTGGAAGGGA+TGG + chr4.3:2974348-2974367 MS.gene05985:CDS 55.0%
!! AGGAGTGGTTGGGCTTTGGA+GGG - chr4.3:2973905-2973924 None:intergenic 55.0%
!! CATGGATTGGCCCATTACGC+CGG - chr4.3:2973831-2973850 None:intergenic 55.0%
!! TGAAGTGGCGGGTGAGAATG+AGG - chr4.3:2973754-2973773 None:intergenic 55.0%
AACCCCATCAAACACCCGCC+TGG + chr4.3:2973793-2973812 MS.gene05985:CDS 60.0%
ACCCCATCAAACACCCGCCT+GGG + chr4.3:2973794-2973813 MS.gene05985:CDS 60.0%
ACCCTAGCAATCTTCGCCGG+TGG + chr4.3:2974199-2974218 MS.gene05985:CDS 60.0%
ACGGATGAGATGGGCGCACA+TGG - chr4.3:2973849-2973868 None:intergenic 60.0%
AGCCCAGGCGGGTGTTTGAT+GGG - chr4.3:2973799-2973818 None:intergenic 60.0%
AGGACGGATCGAACGTCGGA+GGG - chr4.3:2974007-2974026 None:intergenic 60.0%
ATTGTGATGCGACGGCGTGG+GGG - chr4.3:2973955-2973974 None:intergenic 60.0%
CTCCACCGGCGAAGATTGCT+AGG - chr4.3:2974204-2974223 None:intergenic 60.0%
GAGGAGGACGGATCGAACGT+CGG - chr4.3:2974011-2974030 None:intergenic 60.0%
GATTGTGATGCGACGGCGTG+GGG - chr4.3:2973956-2973975 None:intergenic 60.0%
GCACTCGCCGGTCTCAAATC+CGG + chr4.3:2974046-2974065 MS.gene05985:CDS 60.0%
GCCCAACCACTCCTCGACAT+CGG + chr4.3:2973911-2973930 MS.gene05985:CDS 60.0%
GCCGATGTCGAGGAGTGGTT+GGG - chr4.3:2973915-2973934 None:intergenic 60.0%
GGAGACCGTGGCGCAAAGAA+TGG + chr4.3:2974175-2974194 MS.gene05985:CDS 60.0%
GGATTGTGATGCGACGGCGT+GGG - chr4.3:2973957-2973976 None:intergenic 60.0%
GGCACCCTAGCAATCTTCGC+CGG + chr4.3:2974196-2974215 MS.gene05985:CDS 60.0%
GGTGCGGTTGAAGACGGTGA+GGG - chr4.3:2973882-2973901 None:intergenic 60.0%
GGTGTTTGGGTCGAGGAGGA+CGG - chr4.3:2974023-2974042 None:intergenic 60.0%
GTCCTCCTCGACCCAAACAC+CGG + chr4.3:2974022-2974041 MS.gene05985:CDS 60.0%
GTCGAGGAGTGGTTGGGCTT+TGG - chr4.3:2973909-2973928 None:intergenic 60.0%
GTCGGAGGGGTAACCAACGA+TGG - chr4.3:2973993-2974012 None:intergenic 60.0%
TGATGCGGCGGTAGAGGGAA+CGG - chr4.3:2973712-2973731 None:intergenic 60.0%
TGATGGGGTTATGGGCTCGG+AGG - chr4.3:2973783-2973802 None:intergenic 60.0%
TGCGCCCATCTCATCCGTTC+CGG + chr4.3:2973851-2973870 MS.gene05985:CDS 60.0%
TGTGAGAGTGGCTGATGCGG+CGG - chr4.3:2973724-2973743 None:intergenic 60.0%
! CGGTGAGGGTGTAACCGGAA+CGG - chr4.3:2973868-2973887 None:intergenic 60.0%
! GAGGAGTGGTTGGGCTTTGG+AGG - chr4.3:2973906-2973925 None:intergenic 60.0%
!! AGTGGCGGGTGAGAATGAGG+AGG - chr4.3:2973751-2973770 None:intergenic 60.0%
!! GAGTGGTTGGGCTTTGGAGG+GGG - chr4.3:2973903-2973922 None:intergenic 60.0%
!! GGAGTGGTTGGGCTTTGGAG+GGG - chr4.3:2973904-2973923 None:intergenic 60.0%
!! GGGTGCCATTCTTTGCGCCA+CGG - chr4.3:2974183-2974202 None:intergenic 60.0%
!! TGCAGCGTCGGCGATTTCGA+CGG - chr4.3:2974113-2974132 None:intergenic 60.0%
!! TGGATCGGCACCGGCGTAAT+GGG + chr4.3:2973818-2973837 MS.gene05985:CDS 60.0%
AGTGGCTGATGCGGCGGTAG+AGG - chr4.3:2973718-2973737 None:intergenic 65.0%
ATCGACGCTCCCGTTTCCGG+TGG + chr4.3:2974154-2974173 MS.gene05985:CDS 65.0%
CAGCCCAGGCGGGTGTTTGA+TGG - chr4.3:2973800-2973819 None:intergenic 65.0%
CATCAAACACCCGCCTGGGC+TGG + chr4.3:2973798-2973817 MS.gene05985:CDS 65.0%
CCACGGTCTCCACCGGAAAC+GGG - chr4.3:2974166-2974185 None:intergenic 65.0%
CGCCGATGTCGAGGAGTGGT+TGG - chr4.3:2973916-2973935 None:intergenic 65.0%
CGGAGGTGGCCATGAAGTGG+CGG - chr4.3:2973766-2973785 None:intergenic 65.0%
CGGATTGTGATGCGACGGCG+TGG - chr4.3:2973958-2973977 None:intergenic 65.0%
CTCGCCGGTCTCAAATCCGG+TGG + chr4.3:2974049-2974068 MS.gene05985:CDS 65.0%
CTTTGCGCCACGGTCTCCAC+CGG - chr4.3:2974173-2974192 None:intergenic 65.0%
GACGGCGAGGGAAGGATCTG+AGG - chr4.3:2974095-2974114 None:intergenic 65.0%
GAGGACGGATCGAACGTCGG+AGG - chr4.3:2974008-2974027 None:intergenic 65.0%
GCAATTTCGACGGGTGCGGC+TGG + chr4.3:2974415-2974434 MS.gene05985:CDS 65.0%
GCCACGGTCTCCACCGGAAA+CGG - chr4.3:2974167-2974186 None:intergenic 65.0%
GCCCAGGCGGGTGTTTGATG+GGG - chr4.3:2973798-2973817 None:intergenic 65.0%
GCGATTTCGACGGCGAGGGA+AGG - chr4.3:2974103-2974122 None:intergenic 65.0%
GCTCGGAGGTGGCCATGAAG+TGG - chr4.3:2973769-2973788 None:intergenic 65.0%
GGACGGATCGAACGTCGGAG+GGG - chr4.3:2974006-2974025 None:intergenic 65.0%
GGAGGTGGCCATGAAGTGGC+GGG - chr4.3:2973765-2973784 None:intergenic 65.0%
GGGTGCGGTTGAAGACGGTG+AGG - chr4.3:2973883-2973902 None:intergenic 65.0%
GTCGGCGATTTCGACGGCGA+GGG - chr4.3:2974107-2974126 None:intergenic 65.0%
GTGGCTGATGCGGCGGTAGA+GGG - chr4.3:2973717-2973736 None:intergenic 65.0%
TGGGGTTATGGGCTCGGAGG+TGG - chr4.3:2973780-2973799 None:intergenic 65.0%
TTGTGATGCGACGGCGTGGG+GGG - chr4.3:2973954-2973973 None:intergenic 65.0%
! AACACCCGCCTGGGCTGGAT+CGG + chr4.3:2973803-2973822 MS.gene05985:CDS 65.0%
! GGAGGGGGTGCGGTTGAAGA+CGG - chr4.3:2973888-2973907 None:intergenic 65.0%
! TTTGAGACCGGCGAGTGCGC+CGG - chr4.3:2974044-2974063 None:intergenic 65.0%
!! CTGGATCGGCACCGGCGTAA+TGG + chr4.3:2973817-2973836 MS.gene05985:CDS 65.0%
!! GTTGGGCTTTGGAGGGGGTG+CGG - chr4.3:2973898-2973917 None:intergenic 65.0%
CCAAACACCGGCGCACTCGC+CGG + chr4.3:2974034-2974053 MS.gene05985:CDS 70.0%
CCCGTTTCCGGTGGAGACCG+TGG + chr4.3:2974163-2974182 MS.gene05985:CDS 70.0%
CGCCGGTGTTTGGGTCGAGG+AGG - chr4.3:2974027-2974046 None:intergenic 70.0%
CGTCGGCGATTTCGACGGCG+AGG - chr4.3:2974108-2974127 None:intergenic 70.0%
! CGGCGAGTGCGCCGGTGTTT+GGG - chr4.3:2974036-2974055 None:intergenic 70.0%
! GTGCGCCGGTGTTTGGGTCG+AGG - chr4.3:2974030-2974049 None:intergenic 70.0%
!! GTGGCGCCGATGTCGAGGAG+TGG - chr4.3:2973920-2973939 None:intergenic 70.0%
GGCGTGGGGGGAAGTGGCGA+GGG - chr4.3:2973942-2973961 None:intergenic 75.0%
GTGGGGGGAAGTGGCGAGGG+TGG - chr4.3:2973939-2973958 None:intergenic 75.0%
TGCGACGGCGTGGGGGGAAG+TGG - chr4.3:2973948-2973967 None:intergenic 75.0%
! CCGGCGAGTGCGCCGGTGTT+TGG - chr4.3:2974037-2974056 None:intergenic 75.0%
! CGCCTGGGCTGGATCGGCAC+CGG + chr4.3:2973809-2973828 MS.gene05985:CDS 75.0%
!! CGAGGGTGGCGCCGATGTCG+AGG - chr4.3:2973925-2973944 None:intergenic 75.0%
!! CGGTGCCGATCCAGCCCAGG+CGG - chr4.3:2973811-2973830 None:intergenic 75.0%
!! GGTGCCGATCCAGCCCAGGC+GGG - chr4.3:2973810-2973829 None:intergenic 75.0%
! CGGCGTGGGGGGAAGTGGCG+AGG - chr4.3:2973943-2973962 None:intergenic 80.0%
!!! CGCCGGTGCCGATCCAGCCC+AGG - chr4.3:2973814-2973833 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 2973686 2974699 2973686 ID=MS.gene05985
chr4.3 mRNA 2973686 2974699 2973686 ID=MS.gene05985.t1;Parent=MS.gene05985
chr4.3 exon 2973686 2974699 2973686 ID=MS.gene05985.t1.exon1;Parent=MS.gene05985.t1
chr4.3 CDS 2973686 2974699 2973686 ID=cds.MS.gene05985.t1;Parent=MS.gene05985.t1
Gene Sequence

>MS.gene05985

ATGCCACTTCCATTCCTACGTTTCCGTTCCCTCTACCGCCGCATCAGCCACTCTCACACTCACCTCCTCATTCTCACCCGCCACTTCATGGCCACCTCCGAGCCCATAACCCCATCAAACACCCGCCTGGGCTGGATCGGCACCGGCGTAATGGGCCAATCCATGTGCGCCCATCTCATCCGTTCCGGTTACACCCTCACCGTCTTCAACCGCACCCCCTCCAAAGCCCAACCACTCCTCGACATCGGCGCCACCCTCGCCACTTCCCCCCACGCCGTCGCATCACAATCCGACGTCGTTTTCTCCATCGTTGGTTACCCCTCCGACGTTCGATCCGTCCTCCTCGACCCAAACACCGGCGCACTCGCCGGTCTCAAATCCGGTGGCATCCTCGTTGACATGACAACCTCAGATCCTTCCCTCGCCGTCGAAATCGCCGACGCTGCATCAGTTAAAAACTGTCACTCAATCGACGCTCCCGTTTCCGGTGGAGACCGTGGCGCAAAGAATGGCACCCTAGCAATCTTCGCCGGTGGAGATGAATCAATCGTGAAAAAACTTTCTCCATTGTTTTCATCATTGGGGAAAGTGAACTACATGGGAACTAGCGGAAAAGGTCAATTCGCGAAGCTAGCGAATCAGATAACGATAGCTTCAACAATGGTAGGGTTAGTGGAAGGGATGGTGTATGCACACAAAGCGGGACTTGATGTAGGGTTGTATCTGGATGCAATTTCGACGGGTGCGGCTGGTTCGAAATCGCTTGAGTTGTATGGTAAGAGAATTCTGAAGAGGGATTTTGAAGCAGGGTTTTATGTGAACCATTTTGTGAAGGATTTAGGGATTTGTTTGAAAGAATGTGAGAAAATGGGTATTGCTTTGCCTGGTTTGGCACTTGCTCAACAGCTTTATGTGTCTCTTAAGGCTCATGGTGAAGGTAATTTGGGTACTCAGGCTCTTATTTTGGTTCTTGAGCGACTCAACAATGTTTCTCTTCCACCTTCTGTGGTATGA

Protein sequence

>MS.gene05985.t1

MPLPFLRFRSLYRRISHSHTHLLILTRHFMATSEPITPSNTRLGWIGTGVMGQSMCAHLIRSGYTLTVFNRTPSKAQPLLDIGATLATSPHAVASQSDVVFSIVGYPSDVRSVLLDPNTGALAGLKSGGILVDMTTSDPSLAVEIADAASVKNCHSIDAPVSGGDRGAKNGTLAIFAGGDESIVKKLSPLFSSLGKVNYMGTSGKGQFAKLANQITIASTMVGLVEGMVYAHKAGLDVGLYLDAISTGAAGSKSLELYGKRILKRDFEAGFYVNHFVKDLGICLKECEKMGIALPGLALAQQLYVSLKAHGEGNLGTQALILVLERLNNVSLPPSVV