Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070260.t1 | XP_003610089.2 | 93.3 | 788 | 17 | 1 | 1 | 752 | 1 | 788 | 0.00E+00 | 1446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070260.t1 | Q7ZVR1 | 25.2 | 812 | 482 | 25 | 3 | 752 | 13 | 761 | 3.6e-47 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070260.t1 | G7JUE1 | 93.3 | 788 | 17 | 1 | 1 | 752 | 1 | 788 | 0.0e+00 | 1446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053895 | MS.gene070260 | -0.804981 | 1.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070260.t1 | MTR_4g127820 | 93.274 | 788 | 17 | 1 | 1 | 752 | 1 | 788 | 0.0 | 1500 |
| MS.gene070260.t1 | MTR_4g127820 | 92.492 | 666 | 14 | 1 | 1 | 630 | 1 | 666 | 0.0 | 1251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070260.t1 | AT2G18900 | 53.474 | 806 | 316 | 7 | 2 | 752 | 3 | 804 | 0.0 | 861 |
| MS.gene070260.t1 | AT3G26480 | 40.852 | 798 | 372 | 15 | 1 | 747 | 2 | 750 | 0.0 | 575 |
| MS.gene070260.t1 | AT3G26480 | 41.471 | 680 | 317 | 12 | 1 | 630 | 2 | 650 | 1.30e-172 | 511 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGTGTTCTGAATTTA+TGG | 0.051705 | 8.2:+5929446 | MS.gene070260:CDS |
| GTCTTATTTGTTTGAAATTC+TGG | 0.092005 | 8.2:+5925997 | MS.gene070260:CDS |
| TAGTCCCTGTGGGAAATTTC+TGG | 0.137918 | 8.2:+5923398 | MS.gene070260:CDS |
| TACCTCTTTCAATGTAATTA+TGG | 0.186644 | 8.2:-5922752 | None:intergenic |
| TCCACAATTTCAGGACAATT+TGG | 0.205354 | 8.2:+5929288 | MS.gene070260:intron |
| ATTTGGTGCTAAGAACTTTC+AGG | 0.214057 | 8.2:+5923599 | MS.gene070260:CDS |
| GATGGAGTCTATTTGTATTC+AGG | 0.226447 | 8.2:+5923759 | MS.gene070260:CDS |
| CATAAATTCAGAACACAATT+TGG | 0.241410 | 8.2:-5929445 | None:intergenic |
| AAACAGACGTTCCTTTGATT+TGG | 0.242307 | 8.2:-5927808 | None:intergenic |
| ACACTGCTTACATATTTAAA+TGG | 0.253048 | 8.2:+5929018 | MS.gene070260:CDS |
| TATATTAAAGATCTCTTCTA+TGG | 0.256739 | 8.2:+5924464 | MS.gene070260:CDS |
| AGATCTTTAATATATGAATT+TGG | 0.260390 | 8.2:-5924455 | None:intergenic |
| TGCCCGCGTTTGAATTAAAA+AGG | 0.263248 | 8.2:+5929334 | MS.gene070260:CDS |
| TTGTTTGAAATTCTGGGATT+TGG | 0.264801 | 8.2:+5926004 | MS.gene070260:CDS |
| GCAGCCTTTGACCGCTCTTC+TGG | 0.272718 | 8.2:+5925175 | MS.gene070260:CDS |
| TCAAAGGAACGTCTGTTTAA+AGG | 0.285658 | 8.2:+5927813 | MS.gene070260:CDS |
| ATCCTATTCCAGTGGCTTCC+TGG | 0.299526 | 8.2:+5927868 | MS.gene070260:CDS |
| GGTGGACATTGAAAATCTTT+TGG | 0.303410 | 8.2:-5926036 | None:intergenic |
| TCTTTCAGATATGGGTTTGC+AGG | 0.310406 | 8.2:+5926389 | MS.gene070260:intron |
| TATCTTCTTTCCGTATCTTA+TGG | 0.315540 | 8.2:+5927441 | MS.gene070260:CDS |
| ATGTGATGACCCACTAAATA+TGG | 0.321210 | 8.2:-5929406 | None:intergenic |
| AACAGACGTTCCTTTGATTT+GGG | 0.332736 | 8.2:-5927807 | None:intergenic |
| AGACCTCCTATTCCTTCTTC+AGG | 0.339151 | 8.2:-5925978 | None:intergenic |
| GAGATAATGAGGTCTATATC+AGG | 0.346516 | 8.2:+5924486 | MS.gene070260:CDS |
| GCAGAATTAGAGTCCACTTT+AGG | 0.348714 | 8.2:-5923459 | None:intergenic |
| AATCTGTGCAGAACAAAGTT+TGG | 0.352179 | 8.2:-5922695 | None:intergenic |
| CTGCACCACAGCTGTCTGTT+TGG | 0.361408 | 8.2:+5927466 | MS.gene070260:CDS |
| AATGAGCTCATTGCTGTTGT+AGG | 0.369186 | 8.2:+5926950 | MS.gene070260:CDS |
| TCTTATTTGTTTGAAATTCT+GGG | 0.369586 | 8.2:+5925998 | MS.gene070260:CDS |
| TAGCAAACAAGCTGTAGAAT+TGG | 0.385555 | 8.2:-5925231 | None:intergenic |
| TGCTAATCGTGGACTTTATG+AGG | 0.385797 | 8.2:+5925249 | MS.gene070260:CDS |
| TGACCGCTCTTCTGGTTTAG+TGG | 0.389101 | 8.2:+5925183 | MS.gene070260:CDS |
| ATGGCTGTCAGCGCATCTTA+TGG | 0.392854 | 8.2:+5926274 | MS.gene070260:CDS |
| AGGAAGGAGTTCTCGTGCTT+TGG | 0.397994 | 8.2:+5924219 | MS.gene070260:CDS |
| CGAAGCGGAGATCCAATTCT+TGG | 0.399101 | 8.2:-5924272 | None:intergenic |
| CTGGTGTATCAAATAGGCCT+TGG | 0.406292 | 8.2:+5929379 | MS.gene070260:CDS |
| ATTGGGAGGCTCATCTTTGT+TGG | 0.406726 | 8.2:+5927408 | MS.gene070260:CDS |
| CTTGTTGGGCTTGAAGAAAA+TGG | 0.408572 | 8.2:+5929114 | MS.gene070260:CDS |
| GACCAGGAAGCCACTGGAAT+AGG | 0.410097 | 8.2:-5927870 | None:intergenic |
| TGGGAAATTTCTGGGCATAA+AGG | 0.423011 | 8.2:+5923407 | MS.gene070260:CDS |
| AGTCCCTGTGGGAAATTTCT+GGG | 0.428071 | 8.2:+5923399 | MS.gene070260:CDS |
| GCAATGAGCTCATTCTTGTC+AGG | 0.429752 | 8.2:-5926941 | None:intergenic |
| TTACAAGTTTCCTCCCTTGA+CGG | 0.430747 | 8.2:+5922329 | MS.gene070260:CDS |
| AATTCAAACGCGGGCAACTC+TGG | 0.434969 | 8.2:-5929327 | None:intergenic |
| TTCCATAATTACATTGAAAG+AGG | 0.437023 | 8.2:+5922750 | MS.gene070260:CDS |
| GTTTCATCCGACCCGTCATA+TGG | 0.439794 | 8.2:+5926255 | MS.gene070260:CDS |
| ATCTGTGCAGAACAAAGTTT+GGG | 0.441289 | 8.2:-5922694 | None:intergenic |
| AACTTGTAAGGCGGTGGTGG+TGG | 0.441877 | 8.2:-5922315 | None:intergenic |
| ATGCCATGTGGAACATGATT+CGG | 0.443721 | 8.2:-5923697 | None:intergenic |
| GTAGGTAACAATGTTTGAAC+CGG | 0.444501 | 8.2:-5922387 | None:intergenic |
| TAGCTGCATCATGGTCATAT+AGG | 0.444692 | 8.2:+5927502 | MS.gene070260:CDS |
| AACTAAAATTCCGAAGCGTC+TGG | 0.448923 | 8.2:-5926432 | None:intergenic |
| GTGGCTGCAGGCGATGTAAC+CGG | 0.453400 | 8.2:+5923555 | MS.gene070260:CDS |
| AACTTTGTTCTGCACAGATT+AGG | 0.455949 | 8.2:+5922698 | MS.gene070260:CDS |
| ATCTTATGGTGGAGATTTCA+AGG | 0.457592 | 8.2:+5926288 | MS.gene070260:CDS |
| GTTGGATGTGCCATGCTGTT+GGG | 0.457899 | 8.2:+5926452 | MS.gene070260:CDS |
| GTCTACTGACGGCTCTATGA+TGG | 0.459696 | 8.2:+5925935 | MS.gene070260:CDS |
| ACCGAGGCAAATGAAGGATC+TGG | 0.461506 | 8.2:-5924311 | None:intergenic |
| TTCAGGTAGCTTGACTTCTA+CGG | 0.462358 | 8.2:-5925961 | None:intergenic |
| AGTTGGATGTGCCATGCTGT+TGG | 0.463893 | 8.2:+5926451 | MS.gene070260:CDS |
| TCACGTGCTTCCTTGTCATA+TGG | 0.467300 | 8.2:-5929066 | None:intergenic |
| ATGGAATGCAAGAACGGAAA+AGG | 0.471744 | 8.2:-5923517 | None:intergenic |
| AAGCTACCTGAAGAAGGAAT+AGG | 0.474205 | 8.2:+5925972 | MS.gene070260:CDS |
| ACTGATGAGGAATGTAAGCC+TGG | 0.474768 | 8.2:+5923654 | MS.gene070260:CDS |
| TCATATAGGATTCAAATAGA+AGG | 0.476300 | 8.2:+5927516 | MS.gene070260:CDS |
| AGCAGAAAGACCAGACGCTT+CGG | 0.477046 | 8.2:+5926422 | MS.gene070260:CDS |
| TCCAGATCCTTCATTTGCCT+CGG | 0.479151 | 8.2:+5924310 | MS.gene070260:CDS |
| TGAATTTATGGAGTCTCTGA+TGG | 0.479950 | 8.2:+5929458 | MS.gene070260:CDS |
| GAAGATAGCGACGGAGGTGC+CGG | 0.479976 | 8.2:-5922291 | None:intergenic |
| CATACCGTGACCTCGTCAAC+TGG | 0.480508 | 8.2:-5925759 | None:intergenic |
| CCTTGGGAAACCATATTTAG+TGG | 0.481012 | 8.2:+5929396 | MS.gene070260:CDS |
| CTATGCAGGATGATCTTGTT+GGG | 0.481211 | 8.2:+5929100 | MS.gene070260:CDS |
| AAAAGCAATGCTCCCTCCCT+TGG | 0.482991 | 8.2:-5928974 | None:intergenic |
| CGATACTGTTATTACATTGT+GGG | 0.484758 | 8.2:+5926916 | MS.gene070260:CDS |
| CAAGAATTGGATCTCCGCTT+CGG | 0.485117 | 8.2:+5924273 | MS.gene070260:CDS |
| TGGAGTCTCTGATGGAGAAA+AGG | 0.488044 | 8.2:+5929466 | MS.gene070260:CDS |
| GCTGTACAAACAGATAATTA+TGG | 0.491659 | 8.2:+5925205 | MS.gene070260:CDS |
| TGGTGTATCAAATAGGCCTT+GGG | 0.492735 | 8.2:+5929380 | MS.gene070260:CDS |
| ACAAAGATGAGCCTCCCAAT+TGG | 0.495393 | 8.2:-5927405 | None:intergenic |
| TAGAAGACGGTCGCCGGAGT+TGG | 0.495515 | 8.2:-5922261 | None:intergenic |
| CCTCCATCTTTCTCCAACTC+CGG | 0.496290 | 8.2:+5922248 | MS.gene070260:CDS |
| TACAGCTTGTTTGCTAATCG+TGG | 0.498916 | 8.2:+5925238 | MS.gene070260:CDS |
| ACCTCCGTCATCGTCGTCCC+CGG | 0.504848 | 8.2:+5922368 | MS.gene070260:CDS |
| TTCAGAACACAATTTGGTGA+GGG | 0.506646 | 8.2:-5929439 | None:intergenic |
| AATCATGTTCCACATGGCAT+TGG | 0.506867 | 8.2:+5923700 | MS.gene070260:CDS |
| ACTATGCAGGATGATCTTGT+TGG | 0.508221 | 8.2:+5929099 | MS.gene070260:CDS |
| GGAAACTTGTAAGGCGGTGG+TGG | 0.510621 | 8.2:-5922318 | None:intergenic |
| AGCTGATGGTTCTGTGCTTG+CGG | 0.519424 | 8.2:+5926886 | MS.gene070260:CDS |
| GAGGTCTATATCAGGGATCA+AGG | 0.523694 | 8.2:+5924494 | MS.gene070260:CDS |
| AAGAGCGGTCAAAGGCTGCT+TGG | 0.523886 | 8.2:-5925171 | None:intergenic |
| TATATGGAAAGTTCCTAAAG+TGG | 0.526039 | 8.2:+5923446 | MS.gene070260:CDS |
| TTTATAATAGGTGGGAAGGA+AGG | 0.526948 | 8.2:+5924203 | MS.gene070260:intron |
| GTCAAGGGAGGAAACTTGTA+AGG | 0.528574 | 8.2:-5922327 | None:intergenic |
| CACAGGGACTAACGATCAAA+GGG | 0.532091 | 8.2:-5923386 | None:intergenic |
| GAACGTCTGTTTAAAGGTGA+TGG | 0.533073 | 8.2:+5927819 | MS.gene070260:CDS |
| ACCTGTGAGGTTCATAAACA+AGG | 0.536448 | 8.2:-5926058 | None:intergenic |
| TCGCCGGAGTTGGAGAAAGA+TGG | 0.538335 | 8.2:-5922251 | None:intergenic |
| GCAGCCACAATCCTCTCAGT+TGG | 0.539224 | 8.2:-5923540 | None:intergenic |
| GTTACAGACCAGGAAGCCAC+TGG | 0.539338 | 8.2:-5927876 | None:intergenic |
| TGCTCTCATTCCCAAATCAA+AGG | 0.540226 | 8.2:+5927797 | MS.gene070260:CDS |
| CCGATACTGTTATTACATTG+TGG | 0.540808 | 8.2:+5926915 | MS.gene070260:CDS |
| CCACAATCCTCTCAGTTGGA+TGG | 0.541489 | 8.2:-5923536 | None:intergenic |
| ACTCTCACCGAGGCAAATGA+AGG | 0.542459 | 8.2:-5924317 | None:intergenic |
| CCCTTGTTTATGAACCTCAC+AGG | 0.543669 | 8.2:+5926057 | MS.gene070260:CDS |
| GGCTTCCTGGTCTGTAACGA+AGG | 0.545184 | 8.2:+5927881 | MS.gene070260:CDS |
| GAAGTCAAGCTACCTGAAGA+AGG | 0.545252 | 8.2:+5925966 | MS.gene070260:CDS |
| CCACAGGGACTAACGATCAA+AGG | 0.545877 | 8.2:-5923387 | None:intergenic |
| ACTGAGAGGATTGTGGCTGC+AGG | 0.549542 | 8.2:+5923543 | MS.gene070260:CDS |
| ATATGATAAATCTAATGCAC+AGG | 0.550493 | 8.2:-5927763 | None:intergenic |
| CCTTTGATCGTTAGTCCCTG+TGG | 0.550626 | 8.2:+5923387 | MS.gene070260:CDS |
| GACCGTCTTCTAGTCGGCTC+CGG | 0.551757 | 8.2:+5922272 | MS.gene070260:CDS |
| TCTACTGACGGCTCTATGAT+GGG | 0.554140 | 8.2:+5925936 | MS.gene070260:CDS |
| AGGAATGTAAGCCTGGGGTA+AGG | 0.555165 | 8.2:+5923661 | MS.gene070260:CDS |
| CCACAATGTAATAACAGTAT+CGG | 0.556260 | 8.2:-5926915 | None:intergenic |
| TGAGCTTAATATGACTATGC+AGG | 0.557854 | 8.2:+5929086 | MS.gene070260:CDS |
| GCCGACTAGAAGACGGTCGC+CGG | 0.558169 | 8.2:-5922267 | None:intergenic |
| ATAGACTCCATCTGAAGAGA+AGG | 0.559080 | 8.2:-5923748 | None:intergenic |
| CAATACCTTCGTTACAGACC+AGG | 0.561180 | 8.2:-5927886 | None:intergenic |
| AGTATCGGTGTGACCGTCAA+GGG | 0.562310 | 8.2:-5922342 | None:intergenic |
| TATTCTTTCAGCCAATTGGG+AGG | 0.564177 | 8.2:+5927394 | MS.gene070260:intron |
| TGCGCTGACAGCCATATGAC+GGG | 0.567458 | 8.2:-5926266 | None:intergenic |
| ACTGAGCACCGAACGATGAA+GGG | 0.571623 | 8.2:+5922203 | None:intergenic |
| CTTTCAGATATGGGTTTGCA+GGG | 0.572213 | 8.2:+5926390 | MS.gene070260:intron |
| TCCTTATTCAGGCCAAGGGA+GGG | 0.574416 | 8.2:+5928962 | MS.gene070260:intron |
| TGGTGCAGAACCATAAGATA+CGG | 0.575595 | 8.2:-5927451 | None:intergenic |
| ATGCGCTGACAGCCATATGA+CGG | 0.576443 | 8.2:-5926267 | None:intergenic |
| TCTCTTCTATGGAGATAATG+AGG | 0.579103 | 8.2:+5924475 | MS.gene070260:CDS |
| CTCCTTATTCAGGCCAAGGG+AGG | 0.579287 | 8.2:+5928961 | MS.gene070260:intron |
| TGTCAAAGTTAGCTGCATCA+TGG | 0.579652 | 8.2:+5927493 | MS.gene070260:CDS |
| AGTTGGATGGAATGCAAGAA+CGG | 0.583563 | 8.2:-5923523 | None:intergenic |
| CATATTTCTTGAGAAGACAA+AGG | 0.583774 | 8.2:-5925133 | None:intergenic |
| CTTTGATCGTTAGTCCCTGT+GGG | 0.584126 | 8.2:+5923388 | MS.gene070260:CDS |
| CTACCTGAAGAAGGAATAGG+AGG | 0.587849 | 8.2:+5925975 | MS.gene070260:CDS |
| CAGTATCGGTGTGACCGTCA+AGG | 0.588682 | 8.2:-5922343 | None:intergenic |
| GGAGGAAACTTGTAAGGCGG+TGG | 0.590494 | 8.2:-5922321 | None:intergenic |
| CTTGGGAAACCATATTTAGT+GGG | 0.591029 | 8.2:+5929397 | MS.gene070260:CDS |
| CCATCCAACTGAGAGGATTG+TGG | 0.594328 | 8.2:+5923536 | MS.gene070260:CDS |
| CAATGAGCTCATTCTTGTCA+GGG | 0.598664 | 8.2:-5926940 | None:intergenic |
| GAACACAATTTGGTGAGGGG+TGG | 0.599664 | 8.2:-5929435 | None:intergenic |
| ATTCAGAACACAATTTGGTG+AGG | 0.601346 | 8.2:-5929440 | None:intergenic |
| TATGCCCAGAAATTTCCCAC+AGG | 0.602180 | 8.2:-5923403 | None:intergenic |
| ACTCTCCTTATTCAGGCCAA+GGG | 0.605057 | 8.2:+5928958 | MS.gene070260:intron |
| TGAACCGGGGACGACGATGA+CGG | 0.610939 | 8.2:-5922372 | None:intergenic |
| TAGGTAACAATGTTTGAACC+GGG | 0.612008 | 8.2:-5922386 | None:intergenic |
| ATGGTGGAGTTGTCTACTGA+CGG | 0.612208 | 8.2:+5925924 | MS.gene070260:CDS |
| CAGAACATCAATGACTGATG+AGG | 0.616046 | 8.2:+5923641 | MS.gene070260:CDS |
| CGCAACAGATCCTATTCCAG+TGG | 0.616768 | 8.2:+5927860 | MS.gene070260:CDS |
| GATGGAGAAAAGGACATCGA+TGG | 0.617383 | 8.2:+5929476 | MS.gene070260:CDS |
| TCAACCAGTTGACGAGGTCA+CGG | 0.618650 | 8.2:+5925755 | MS.gene070260:CDS |
| TGCCGGAGCCGACTAGAAGA+CGG | 0.620612 | 8.2:-5922274 | None:intergenic |
| TAAACCAGAAGAGCGGTCAA+AGG | 0.622616 | 8.2:-5925179 | None:intergenic |
| AGATAATGAGGTCTATATCA+GGG | 0.622880 | 8.2:+5924487 | MS.gene070260:CDS |
| CCACTAAATATGGTTTCCCA+AGG | 0.626904 | 8.2:-5929396 | None:intergenic |
| GATACCATCGTTATTGTCAC+CGG | 0.628026 | 8.2:+5922600 | MS.gene070260:CDS |
| GTGCTTTGGCAGCTAGACAC+CGG | 0.633010 | 8.2:+5924233 | MS.gene070260:CDS |
| TCAGAACACAATTTGGTGAG+GGG | 0.634558 | 8.2:-5929438 | None:intergenic |
| ATGCCCAGAAATTTCCCACA+GGG | 0.639581 | 8.2:-5923402 | None:intergenic |
| ATCGGTGTGACCGTCAAGGG+AGG | 0.641445 | 8.2:-5922339 | None:intergenic |
| TTGCATTCCATCCAACTGAG+AGG | 0.642642 | 8.2:+5923529 | MS.gene070260:CDS |
| GCTGTCAGCGCATCTTATGG+TGG | 0.643757 | 8.2:+5926277 | MS.gene070260:CDS |
| TCTCTTTGATCCATATGACA+AGG | 0.644718 | 8.2:+5929056 | MS.gene070260:CDS |
| TCCGGCGACCGTCTTCTAGT+CGG | 0.645660 | 8.2:+5922266 | MS.gene070260:CDS |
| GGACTAACGATCAAAGGGTG+AGG | 0.649796 | 8.2:-5923381 | None:intergenic |
| CCGGAGTTGGAGAAAGATGG+AGG | 0.653982 | 8.2:-5922248 | None:intergenic |
| GATGACGGAGGTGACAGTAT+CGG | 0.656068 | 8.2:-5922357 | None:intergenic |
| CCTGTGAGGTTCATAAACAA+GGG | 0.660359 | 8.2:-5926057 | None:intergenic |
| ACTTATATGACCCAACAGCA+TGG | 0.661286 | 8.2:-5926462 | None:intergenic |
| CTGATGAGGAATGTAAGCCT+GGG | 0.661805 | 8.2:+5923655 | MS.gene070260:CDS |
| ATGCCGAATCATGTTCCACA+TGG | 0.664291 | 8.2:+5923694 | MS.gene070260:CDS |
| TCTTCCGGTGACAATAACGA+TGG | 0.670887 | 8.2:-5922604 | None:intergenic |
| ATTTCTTGAGAAGACAAAGG+AGG | 0.675737 | 8.2:-5925130 | None:intergenic |
| CTGACAGCCATATGACGGGT+CGG | 0.676520 | 8.2:-5926262 | None:intergenic |
| GTGAGGTTCATAAACAAGGG+TGG | 0.679854 | 8.2:-5926054 | None:intergenic |
| GGTGGAGAAGATAGCGACGG+AGG | 0.680579 | 8.2:-5922297 | None:intergenic |
| GAGCACCGAACGATGAAGGG+AGG | 0.689052 | 8.2:+5922206 | None:intergenic |
| AAATTATCAACCAGTTGACG+AGG | 0.695676 | 8.2:+5925749 | MS.gene070260:CDS |
| GTCAGTAGACAACTCCACCA+TGG | 0.700569 | 8.2:-5925922 | None:intergenic |
| GGTGGTGGAGAAGATAGCGA+CGG | 0.700715 | 8.2:-5922300 | None:intergenic |
| ACCGGGGACGACGATGACGG+AGG | 0.701693 | 8.2:-5922369 | None:intergenic |
| AAGGGAGGAAACTTGTAAGG+CGG | 0.703168 | 8.2:-5922324 | None:intergenic |
| ATACTCCAAACAGACAGCTG+TGG | 0.705773 | 8.2:-5927471 | None:intergenic |
| GAATCTATGAAATACCGAAG+CGG | 0.706779 | 8.2:-5924287 | None:intergenic |
| GTTGCAGGTAGTAGTGACCA+TGG | 0.717858 | 8.2:+5925905 | MS.gene070260:intron |
| TGTTGTAGGAGAGACTCCAT+CGG | 0.719054 | 8.2:+5926964 | MS.gene070260:CDS |
| AGGTAACAATGTTTGAACCG+GGG | 0.733423 | 8.2:-5922385 | None:intergenic |
| GGTCGGATGAAACGTAATAG+CGG | 0.734607 | 8.2:-5926245 | None:intergenic |
| ATCAGAGTGCCAATGCCATG+TGG | 0.739934 | 8.2:-5923709 | None:intergenic |
| AATCCGTTGACACACCTGTG+AGG | 0.748408 | 8.2:-5926071 | None:intergenic |
| CAGCCACTAAACCAGAAGAG+CGG | 0.753592 | 8.2:-5925186 | None:intergenic |
| TGATGAGGAATGTAAGCCTG+GGG | 0.761336 | 8.2:+5923656 | MS.gene070260:CDS |
| GCAGGTAGTAGTGACCATGG+TGG | 0.771993 | 8.2:+5925908 | MS.gene070260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 5922218 | 5929506 | 5922218 | ID=MS.gene070260 |
| chr8.2 | mRNA | 5922218 | 5929506 | 5922218 | ID=MS.gene070260.t1;Parent=MS.gene070260 |
| chr8.2 | exon | 5922218 | 5922400 | 5922218 | ID=MS.gene070260.t1.exon1;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5922218 | 5922400 | 5922218 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5922598 | 5922771 | 5922598 | ID=MS.gene070260.t1.exon2;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5922598 | 5922771 | 5922598 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5923372 | 5923780 | 5923372 | ID=MS.gene070260.t1.exon3;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5923372 | 5923780 | 5923372 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5924213 | 5924331 | 5924213 | ID=MS.gene070260.t1.exon4;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5924213 | 5924331 | 5924213 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5924438 | 5924515 | 5924438 | ID=MS.gene070260.t1.exon5;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5924438 | 5924515 | 5924438 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5925130 | 5925270 | 5925130 | ID=MS.gene070260.t1.exon6;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5925130 | 5925270 | 5925130 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5925732 | 5925776 | 5925732 | ID=MS.gene070260.t1.exon7;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5925732 | 5925776 | 5925732 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5925912 | 5926078 | 5925912 | ID=MS.gene070260.t1.exon8;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5925912 | 5926078 | 5925912 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5926231 | 5926309 | 5926231 | ID=MS.gene070260.t1.exon9;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5926231 | 5926309 | 5926231 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5926397 | 5926482 | 5926397 | ID=MS.gene070260.t1.exon10;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5926397 | 5926482 | 5926397 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5926856 | 5926985 | 5926856 | ID=MS.gene070260.t1.exon11;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5926856 | 5926985 | 5926856 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5927405 | 5927537 | 5927405 | ID=MS.gene070260.t1.exon12;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5927405 | 5927537 | 5927405 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5927757 | 5927902 | 5927757 | ID=MS.gene070260.t1.exon13;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5927757 | 5927902 | 5927757 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5928973 | 5929135 | 5928973 | ID=MS.gene070260.t1.exon14;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5928973 | 5929135 | 5928973 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| chr8.2 | exon | 5929301 | 5929506 | 5929301 | ID=MS.gene070260.t1.exon15;Parent=MS.gene070260.t1 |
| chr8.2 | CDS | 5929301 | 5929506 | 5929301 | ID=cds.MS.gene070260.t1;Parent=MS.gene070260.t1 |
| Gene Sequence |
| Protein sequence |
