Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070289.t1 | XP_013460071.1 | 86.9 | 175 | 10 | 2 | 1 | 174 | 1 | 163 | 1.70E-52 | 215.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070289.t1 | B7FM91 | 86.9 | 175 | 10 | 2 | 1 | 174 | 1 | 163 | 1.2e-52 | 215.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049599 | MS.gene070289 | -0.812893 | 3.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070289.t1 | MTR_3g461020 | 89.143 | 175 | 6 | 2 | 1 | 174 | 1 | 163 | 3.24e-83 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070289.t1 | AT1G56200 | 61.719 | 128 | 42 | 3 | 48 | 173 | 32 | 154 | 5.46e-21 | 84.3 |
| MS.gene070289.t1 | AT1G56200 | 61.719 | 128 | 42 | 3 | 48 | 173 | 29 | 151 | 6.15e-21 | 84.3 |
| MS.gene070289.t1 | AT1G30475 | 68.182 | 88 | 26 | 1 | 79 | 164 | 73 | 160 | 3.55e-18 | 77.4 |
| MS.gene070289.t1 | AT1G30475 | 68.182 | 88 | 26 | 1 | 79 | 164 | 73 | 160 | 3.55e-18 | 77.4 |
| MS.gene070289.t1 | AT1G30475 | 68.182 | 88 | 26 | 1 | 79 | 164 | 102 | 189 | 4.14e-18 | 77.8 |
Find 48 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTACCTGGTGGTAATT+TGG | 0.111148 | 3.3:-48813689 | None:intergenic |
| CATTTACCTGGTGGTAATTT+GGG | 0.261244 | 3.3:-48813688 | None:intergenic |
| AAGACGAAGGTTACGGTTAC+AGG | 0.291277 | 3.3:+48815644 | MS.gene070289:CDS |
| GGAGGTGGAGGCAACTGGTC+TGG | 0.349107 | 3.3:+48815562 | MS.gene070289:CDS |
| TATAATATGTGCTGCAGCTT+TGG | 0.349585 | 3.3:+48814675 | MS.gene070289:CDS |
| CCAACAATTACCCATCTTCC+AGG | 0.394142 | 3.3:+48815335 | MS.gene070289:CDS |
| CCTGGAAGATGGGTAATTGT+TGG | 0.418823 | 3.3:-48815335 | None:intergenic |
| GAGGTGGAGGTGGAGGCAAC+TGG | 0.422662 | 3.3:+48815557 | MS.gene070289:CDS |
| TTGCCTATCACCGCCTTCTC+CGG | 0.444144 | 3.3:-48815672 | None:intergenic |
| TTAACAGTCCGTAGTCCTCT+TGG | 0.444264 | 3.3:-48814583 | None:intergenic |
| TTCCACCATCATCAATTTGT+GGG | 0.456713 | 3.3:-48815495 | None:intergenic |
| TTAACAGTCCGTAGTCCTCT+TGG | 0.463947 | 3.3:-48814547 | None:intergenic |
| GTCAACAATTACCTGGAAGA+TGG | 0.464114 | 3.3:-48815346 | None:intergenic |
| CAAATTGATGATGGTGGAAG+TGG | 0.481050 | 3.3:+48815499 | MS.gene070289:CDS |
| GTTACGGTTACAGGGATAAC+CGG | 0.483400 | 3.3:+48815653 | MS.gene070289:CDS |
| GAAAGTGAAGACGAAGGTTA+CGG | 0.496218 | 3.3:+48815637 | MS.gene070289:CDS |
| GGTGGAGGCAACTGGTCTGG+TGG | 0.503674 | 3.3:+48815565 | MS.gene070289:CDS |
| CTCGTGATGATGATGATGGC+GGG | 0.516182 | 3.3:+48815530 | MS.gene070289:CDS |
| CTTCCACCATCATCAATTTG+TGG | 0.526409 | 3.3:-48815496 | None:intergenic |
| TCAACAATTACCTGGAAGAT+GGG | 0.540469 | 3.3:-48815345 | None:intergenic |
| TTAAATTTCCAAGAGGACTA+CGG | 0.552642 | 3.3:+48814539 | MS.gene070289:CDS |
| TTAAATTTCCAAGAGGACTA+CGG | 0.552642 | 3.3:+48814575 | MS.gene070289:CDS |
| CGTGATGATGATGATGGCGG+GGG | 0.562407 | 3.3:+48815532 | MS.gene070289:CDS |
| TAGAGGAACTCGTTCTACTC+AGG | 0.576586 | 3.3:+48814645 | MS.gene070289:CDS |
| AAGTCCCCACAAATTGATGA+TGG | 0.581883 | 3.3:+48815490 | MS.gene070289:CDS |
| ACACAGTTTCCACATGGTAG+AGG | 0.591334 | 3.3:+48814628 | MS.gene070289:CDS |
| TCCACCATCATCAATTTGTG+GGG | 0.604881 | 3.3:-48815494 | None:intergenic |
| TCCCCACAAATTGATGATGG+TGG | 0.613798 | 3.3:+48815493 | MS.gene070289:CDS |
| AATACAGTTAAATTTCCAAG+AGG | 0.616988 | 3.3:+48814568 | MS.gene070289:CDS |
| AGACGAAGGTTACGGTTACA+GGG | 0.621370 | 3.3:+48815645 | MS.gene070289:CDS |
| TCTACAGTTAAATTTCCAAG+AGG | 0.623564 | 3.3:+48814532 | MS.gene070289:CDS |
| CCGCCTCGTGATGATGATGA+TGG | 0.624527 | 3.3:+48815526 | MS.gene070289:CDS |
| TCGTGATGATGATGATGGCG+GGG | 0.630213 | 3.3:+48815531 | MS.gene070289:CDS |
| GGCCACTGTGTGGAAGAGAA+TGG | 0.636980 | 3.3:+48814505 | MS.gene070289:CDS |
| TCTTTGCCCAAATTACCACC+AGG | 0.643884 | 3.3:+48813682 | MS.gene070289:CDS |
| GTGTGCACAGTGAGAAGAGG+TGG | 0.650924 | 3.3:+48814484 | MS.gene070289:intron |
| TTTGTGTGCACAGTGAGAAG+AGG | 0.656598 | 3.3:+48814481 | MS.gene070289:intron |
| CCTCGTGATGATGATGATGG+CGG | 0.657157 | 3.3:+48815529 | MS.gene070289:CDS |
| ACTGCACTAGTAGCCAACAT+TGG | 0.665642 | 3.3:-48813655 | None:intergenic |
| CCGCCATCATCATCATCACG+AGG | 0.666501 | 3.3:-48815529 | None:intergenic |
| ACAGGGATAACCGGAGAAGG+CGG | 0.687017 | 3.3:+48815662 | MS.gene070289:CDS |
| GAGAAGAGGTGGCCACTGTG+TGG | 0.687254 | 3.3:+48814495 | MS.gene070289:CDS |
| AGCTGTACACAGTTTCCACA+TGG | 0.691104 | 3.3:+48814622 | MS.gene070289:CDS |
| GTTACAGGGATAACCGGAGA+AGG | 0.698284 | 3.3:+48815659 | MS.gene070289:CDS |
| GAACGAGTTCCTCTACCATG+TGG | 0.701280 | 3.3:-48814637 | None:intergenic |
| GACAAAGAAAGTGAAGACGA+AGG | 0.702140 | 3.3:+48815631 | MS.gene070289:CDS |
| CCATCATCATCATCACGAGG+CGG | 0.728539 | 3.3:-48815526 | None:intergenic |
| CACCATTCTCTTCCACACAG+TGG | 0.743076 | 3.3:-48814507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTGAGACATAATATTT+AGG | + | chr3.3:48813741-48813760 | MS.gene070289:intron | 15.0% |
| !! | ATAACTTGAAATTTCACATA+TGG | + | chr3.3:48814944-48814963 | MS.gene070289:intron | 20.0% |
| !! | ATTAGTAATACATGAAATGA+AGG | - | chr3.3:48815409-48815428 | None:intergenic | 20.0% |
| !! | TAGAAAAACATTAAACATTC+AGG | + | chr3.3:48815137-48815156 | MS.gene070289:intron | 20.0% |
| !! | TTAGTAATACATGAAATGAA+GGG | - | chr3.3:48815408-48815427 | None:intergenic | 20.0% |
| !!! | TATCTATAACGATTTTTTCA+AGG | - | chr3.3:48813850-48813869 | None:intergenic | 20.0% |
| ! | AACTCATAGACTATAAGAAT+TGG | - | chr3.3:48814779-48814798 | None:intergenic | 25.0% |
| ! | AATACAGTTAAATTTCCAAG+AGG | + | chr3.3:48814568-48814587 | MS.gene070289:CDS | 25.0% |
| ! | AATGTATGAAATTTATAGCC+TGG | - | chr3.3:48815001-48815020 | None:intergenic | 25.0% |
| ! | ACAAAAGATACCAAAAAACA+AGG | - | chr3.3:48815061-48815080 | None:intergenic | 25.0% |
| ! | ATGCCTATATAAAGCATAAA+AGG | - | chr3.3:48813910-48813929 | None:intergenic | 25.0% |
| ! | GAAATTTCACATATGGTTTA+TGG | + | chr3.3:48814951-48814970 | MS.gene070289:intron | 25.0% |
| ! | TGCCTATATAAAGCATAAAA+GGG | - | chr3.3:48813909-48813928 | None:intergenic | 25.0% |
| ! | TTAAATTCACGCACAATTTA+AGG | + | chr3.3:48814221-48814240 | MS.gene070289:intron | 25.0% |
| !! | AAAATTGCAATCTAGAGTAA+TGG | - | chr3.3:48814754-48814773 | None:intergenic | 25.0% |
| !! | AGTTGTATGGGTTATAAAAA+TGG | + | chr3.3:48814286-48814305 | MS.gene070289:intron | 25.0% |
| !! | ATCCCTTTTATGCTTTATAT+AGG | + | chr3.3:48813904-48813923 | MS.gene070289:intron | 25.0% |
| !! | GTTGTCTAACCATAAAATTT+TGG | + | chr3.3:48814860-48814879 | MS.gene070289:intron | 25.0% |
| !! | TCATAACTGAACACTTTTAT+TGG | - | chr3.3:48813949-48813968 | None:intergenic | 25.0% |
| !! | TTTTTATAACCCATACAACT+AGG | - | chr3.3:48814286-48814305 | None:intergenic | 25.0% |
| !!! | AGCTGTTTTCCAAAATTTTA+TGG | - | chr3.3:48814872-48814891 | None:intergenic | 25.0% |
| !!! | TTATGTCATTTTTGGAACAT+TGG | + | chr3.3:48814916-48814935 | MS.gene070289:intron | 25.0% |
| AACATGTATGCATTAATCCT+TGG | - | chr3.3:48814066-48814085 | None:intergenic | 30.0% | |
| AGAAATTATCATTTACCTGG+TGG | - | chr3.3:48813700-48813719 | None:intergenic | 30.0% | |
| AGATGGAAAATAAAAGTGAC+GGG | - | chr3.3:48813801-48813820 | None:intergenic | 30.0% | |
| AGGATTAATGCATACATGTT+TGG | + | chr3.3:48814066-48814085 | MS.gene070289:intron | 30.0% | |
| AGGCATAAGAAATATGAGTT+CGG | + | chr3.3:48813761-48813780 | MS.gene070289:intron | 30.0% | |
| ATTACTAATGAATCCATCCA+AGG | + | chr3.3:48815420-48815439 | MS.gene070289:intron | 30.0% | |
| ATTGATTGCTATCTTATCCA+AGG | + | chr3.3:48814046-48814065 | MS.gene070289:intron | 30.0% | |
| CAAAAACACAAAGATGCATA+TGG | - | chr3.3:48814256-48814275 | None:intergenic | 30.0% | |
| CAGATGGAAAATAAAAGTGA+CGG | - | chr3.3:48813802-48813821 | None:intergenic | 30.0% | |
| GTCAGAAATTATCATTTACC+TGG | - | chr3.3:48813703-48813722 | None:intergenic | 30.0% | |
| TAGACAACATAATTCTTCAC+AGG | - | chr3.3:48814848-48814867 | None:intergenic | 30.0% | |
| TATTCTACCCAAGCATATAA+GGG | - | chr3.3:48815116-48815135 | None:intergenic | 30.0% | |
| TCTACAGTTAAATTTCCAAG+AGG | + | chr3.3:48814532-48814551 | MS.gene070289:CDS | 30.0% | |
| TTAAATTTCCAAGAGGACTA+CGG | + | chr3.3:48814539-48814558 | MS.gene070289:CDS | 30.0% | |
| TTTAACACAAATGTGCACAA+TGG | - | chr3.3:48814206-48814225 | None:intergenic | 30.0% | |
| ! | ATATTACCAGAAGTACAGAT+TGG | + | chr3.3:48813971-48813990 | MS.gene070289:intron | 30.0% |
| ! | TATTACCAGAAGTACAGATT+GGG | + | chr3.3:48813972-48813991 | MS.gene070289:intron | 30.0% |
| ! | TGTGTTTTTCCTAGTTGTAT+GGG | + | chr3.3:48814274-48814293 | MS.gene070289:intron | 30.0% |
| ! | TTGAATTCAACTTTCAGGTA+AGG | + | chr3.3:48815465-48815484 | MS.gene070289:intron | 30.0% |
| ! | TTGTGTTTTTCCTAGTTGTA+TGG | + | chr3.3:48814273-48814292 | MS.gene070289:intron | 30.0% |
| !! | ACATTCAGGAGTTTTGATAT+TGG | + | chr3.3:48815151-48815170 | MS.gene070289:intron | 30.0% |
| !! | TTTGGATTTCTTGCTTTTCT+TGG | + | chr3.3:48815598-48815617 | MS.gene070289:CDS | 30.0% |
| !!! | GATTTGATGTCCTTGTTTTT+TGG | + | chr3.3:48815048-48815067 | MS.gene070289:intron | 30.0% |
| !!! | GTGGTCATTTATGTCATTTT+TGG | + | chr3.3:48814908-48814927 | MS.gene070289:intron | 30.0% |
| !!! | TCTGGTGGATTTTTCTTTTT+TGG | + | chr3.3:48815580-48815599 | MS.gene070289:CDS | 30.0% |
| ACAGCTTCATTACTCATTAG+AGG | + | chr3.3:48814886-48814905 | MS.gene070289:intron | 35.0% | |
| AGAAAACCAAATGTGTCAGA+TGG | - | chr3.3:48814388-48814407 | None:intergenic | 35.0% | |
| AGAACACACATCAAATTCAC+TGG | - | chr3.3:48814026-48814045 | None:intergenic | 35.0% | |
| AGTTGACTGGATACTATTTG+AGG | + | chr3.3:48814154-48814173 | MS.gene070289:intron | 35.0% | |
| ATGTGTAAAACAGGATACAG+CGG | - | chr3.3:48813880-48813899 | None:intergenic | 35.0% | |
| CAACATAATTCTTCACAGGT+CGG | - | chr3.3:48814844-48814863 | None:intergenic | 35.0% | |
| CATGGTTGAATTCAACTTTC+AGG | + | chr3.3:48815460-48815479 | MS.gene070289:intron | 35.0% | |
| CATTTACCTGGTGGTAATTT+GGG | - | chr3.3:48813691-48813710 | None:intergenic | 35.0% | |
| CTGAAAGTTGAATTCAACCA+TGG | - | chr3.3:48815462-48815481 | None:intergenic | 35.0% | |
| GAATGTGTCAATTAAAAGCG+CGG | - | chr3.3:48814096-48814115 | None:intergenic | 35.0% | |
| GATGGAAAATAAAAGTGACG+GGG | - | chr3.3:48813800-48813819 | None:intergenic | 35.0% | |
| GGGATATCTATGTGTAAAAC+AGG | - | chr3.3:48813889-48813908 | None:intergenic | 35.0% | |
| GTATTCTACCCAAGCATATA+AGG | - | chr3.3:48815117-48815136 | None:intergenic | 35.0% | |
| TATAATATGTGCTGCAGCTT+TGG | + | chr3.3:48814675-48814694 | MS.gene070289:CDS | 35.0% | |
| TCAACAATTACCTGGAAGAT+GGG | - | chr3.3:48815348-48815367 | None:intergenic | 35.0% | |
| TCATTCAGTCAACAATTACC+TGG | - | chr3.3:48815356-48815375 | None:intergenic | 35.0% | |
| TCATTTACCTGGTGGTAATT+TGG | - | chr3.3:48813692-48813711 | None:intergenic | 35.0% | |
| TTCCACCATCATCAATTTGT+GGG | - | chr3.3:48815498-48815517 | None:intergenic | 35.0% | |
| TTGCATTCTGCATATATCAG+AGG | - | chr3.3:48815274-48815293 | None:intergenic | 35.0% | |
| ! | AATGTGTCAATTAAAAGCGC+GGG | - | chr3.3:48814095-48814114 | None:intergenic | 35.0% |
| ! | GATACTATTTGAGGTGAATG+AGG | + | chr3.3:48814163-48814182 | MS.gene070289:intron | 35.0% |
| AAGTCCCCACAAATTGATGA+TGG | + | chr3.3:48815490-48815509 | MS.gene070289:CDS | 40.0% | |
| AATACTGCCTTTAGCAGGAA+GGG | - | chr3.3:48814340-48814359 | None:intergenic | 40.0% | |
| AATGTGTCAGATGGTATAGC+AGG | - | chr3.3:48814379-48814398 | None:intergenic | 40.0% | |
| ATATAAGGGACCACAAGAAG+AGG | - | chr3.3:48815102-48815121 | None:intergenic | 40.0% | |
| CTTCCACCATCATCAATTTG+TGG | - | chr3.3:48815499-48815518 | None:intergenic | 40.0% | |
| GAAAGTGAAGACGAAGGTTA+CGG | + | chr3.3:48815637-48815656 | MS.gene070289:CDS | 40.0% | |
| GACAAAGAAAGTGAAGACGA+AGG | + | chr3.3:48815631-48815650 | MS.gene070289:CDS | 40.0% | |
| GCTATACCATCTGACACATT+TGG | + | chr3.3:48814379-48814398 | MS.gene070289:intron | 40.0% | |
| GCTTAAAAGTCCTCTTCTTG+TGG | + | chr3.3:48815089-48815108 | MS.gene070289:intron | 40.0% | |
| GCTTCATTACTCATTAGAGG+TGG | + | chr3.3:48814889-48814908 | MS.gene070289:intron | 40.0% | |
| GGTTTATGGATTCTGACCTT+TGG | + | chr3.3:48814965-48814984 | MS.gene070289:intron | 40.0% | |
| GTCAACAATTACCTGGAAGA+TGG | - | chr3.3:48815349-48815368 | None:intergenic | 40.0% | |
| TCCACCATCATCAATTTGTG+GGG | - | chr3.3:48815497-48815516 | None:intergenic | 40.0% | |
| TTGTGGTCCCTTATATGCTT+GGG | + | chr3.3:48815106-48815125 | MS.gene070289:intron | 40.0% | |
| ! | ATTTGAGGTGAATGAGGTGA+AGG | + | chr3.3:48814169-48814188 | MS.gene070289:intron | 40.0% |
| ! | GTATAGCAGGACAAGGATTT+TGG | - | chr3.3:48814366-48814385 | None:intergenic | 40.0% |
| !! | CAAATTGATGATGGTGGAAG+TGG | + | chr3.3:48815499-48815518 | MS.gene070289:CDS | 40.0% |
| !! | GTATGTCACTTCAAGTTGAC+TGG | + | chr3.3:48814141-48814160 | MS.gene070289:intron | 40.0% |
| AAGACGAAGGTTACGGTTAC+AGG | + | chr3.3:48815644-48815663 | MS.gene070289:CDS | 45.0% | |
| ACACAGTTTCCACATGGTAG+AGG | + | chr3.3:48814628-48814647 | MS.gene070289:CDS | 45.0% | |
| AGACGAAGGTTACGGTTACA+GGG | + | chr3.3:48815645-48815664 | MS.gene070289:CDS | 45.0% | |
| AGCTGTACACAGTTTCCACA+TGG | + | chr3.3:48814622-48814641 | MS.gene070289:CDS | 45.0% | |
| ATTCCATCCCTTCCTGCTAA+AGG | + | chr3.3:48814330-48814349 | MS.gene070289:intron | 45.0% | |
| CAATACTGCCTTTAGCAGGA+AGG | - | chr3.3:48814341-48814360 | None:intergenic | 45.0% | |
| CACACATCAAATTCACTGGC+AGG | - | chr3.3:48814022-48814041 | None:intergenic | 45.0% | |
| CATCAAATTCACTGGCAGGA+AGG | - | chr3.3:48814018-48814037 | None:intergenic | 45.0% | |
| CCAACAATTACCCATCTTCC+AGG | + | chr3.3:48815335-48815354 | MS.gene070289:CDS | 45.0% | |
| CCTGGAAGATGGGTAATTGT+TGG | - | chr3.3:48815338-48815357 | None:intergenic | 45.0% | |
| CTTGTGGTCCCTTATATGCT+TGG | + | chr3.3:48815105-48815124 | MS.gene070289:intron | 45.0% | |
| GAAGGGATGGAATGGAATCA+AGG | - | chr3.3:48814323-48814342 | None:intergenic | 45.0% | |
| GATTGCCCAATCTGTACTTC+TGG | - | chr3.3:48813980-48813999 | None:intergenic | 45.0% | |
| GGATCAATACTGCCTTTAGC+AGG | - | chr3.3:48814345-48814364 | None:intergenic | 45.0% | |
| GTTACGGTTACAGGGATAAC+CGG | + | chr3.3:48815653-48815672 | MS.gene070289:CDS | 45.0% | |
| TAGAGGAACTCGTTCTACTC+AGG | + | chr3.3:48814645-48814664 | MS.gene070289:CDS | 45.0% | |
| TCAGATGGTATAGCAGGACA+AGG | - | chr3.3:48814373-48814392 | None:intergenic | 45.0% | |
| TCCATCCAAGGATGCTCTAA+TGG | + | chr3.3:48815432-48815451 | MS.gene070289:intron | 45.0% | |
| TCTTTGCCCAAATTACCACC+AGG | + | chr3.3:48813682-48813701 | MS.gene070289:CDS | 45.0% | |
| TTAACAGTCCGTAGTCCTCT+TGG | - | chr3.3:48814550-48814569 | None:intergenic | 45.0% | |
| TTTAGCAGGAAGGGATGGAA+TGG | - | chr3.3:48814331-48814350 | None:intergenic | 45.0% | |
| TTTGTGTGCACAGTGAGAAG+AGG | + | chr3.3:48814481-48814500 | MS.gene070289:intron | 45.0% | |
| !! | TCCCCACAAATTGATGATGG+TGG | + | chr3.3:48815493-48815512 | MS.gene070289:CDS | 45.0% |
| ACCTTTGGCATACTGCTTCC+AGG | + | chr3.3:48814980-48814999 | MS.gene070289:intron | 50.0% | |
| CACCATTCTCTTCCACACAG+TGG | - | chr3.3:48814510-48814529 | None:intergenic | 50.0% | |
| CCATCATCATCATCACGAGG+CGG | - | chr3.3:48815529-48815548 | None:intergenic | 50.0% | |
| GAACGAGTTCCTCTACCATG+TGG | - | chr3.3:48814640-48814659 | None:intergenic | 50.0% | |
| GTTACAGGGATAACCGGAGA+AGG | + | chr3.3:48815659-48815678 | MS.gene070289:CDS | 50.0% | |
| TGCACGTATCTCGTAGCAGA+TGG | - | chr3.3:48813818-48813837 | None:intergenic | 50.0% | |
| ! | GATGCTCTAATGGCTTGCCA+TGG | + | chr3.3:48815442-48815461 | MS.gene070289:intron | 50.0% |
| ! | GCAAGCCATTAGAGCATCCT+TGG | - | chr3.3:48815440-48815459 | None:intergenic | 50.0% |
| ! | GCCATTAGAGCATCCTTGGA+TGG | - | chr3.3:48815436-48815455 | None:intergenic | 50.0% |
| !! | CCTCGTGATGATGATGATGG+CGG | + | chr3.3:48815529-48815548 | MS.gene070289:CDS | 50.0% |
| !! | CTCGTGATGATGATGATGGC+GGG | + | chr3.3:48815530-48815549 | MS.gene070289:CDS | 50.0% |
| !! | TCGTGATGATGATGATGGCG+GGG | + | chr3.3:48815531-48815550 | MS.gene070289:CDS | 50.0% |
| ACAGGGATAACCGGAGAAGG+CGG | + | chr3.3:48815662-48815681 | MS.gene070289:CDS | 55.0% | |
| CCGCCATCATCATCATCACG+AGG | - | chr3.3:48815532-48815551 | None:intergenic | 55.0% | |
| CTGCCTTTAGCAGGAAGGGA+TGG | - | chr3.3:48814336-48814355 | None:intergenic | 55.0% | |
| GCCTGGAAGCAGTATGCCAA+AGG | - | chr3.3:48814984-48815003 | None:intergenic | 55.0% | |
| GGCCACTGTGTGGAAGAGAA+TGG | + | chr3.3:48814505-48814524 | MS.gene070289:CDS | 55.0% | |
| GTGTGCACAGTGAGAAGAGG+TGG | + | chr3.3:48814484-48814503 | MS.gene070289:intron | 55.0% | |
| ! | CCGCCTCGTGATGATGATGA+TGG | + | chr3.3:48815526-48815545 | MS.gene070289:CDS | 55.0% |
| !! | CGTGATGATGATGATGGCGG+GGG | + | chr3.3:48815532-48815551 | MS.gene070289:CDS | 55.0% |
| GAGAAGAGGTGGCCACTGTG+TGG | + | chr3.3:48814495-48814514 | MS.gene070289:CDS | 60.0% | |
| !! | GATGATGATGATGGCGGGGG+AGG | + | chr3.3:48815535-48815554 | MS.gene070289:CDS | 60.0% |
| GAGGTGGAGGTGGAGGCAAC+TGG | + | chr3.3:48815557-48815576 | MS.gene070289:CDS | 65.0% | |
| GGAGGTGGAGGCAACTGGTC+TGG | + | chr3.3:48815562-48815581 | MS.gene070289:CDS | 65.0% | |
| ! | GGTGGAGGCAACTGGTCTGG+TGG | + | chr3.3:48815565-48815584 | MS.gene070289:CDS | 65.0% |
| !! | GATGATGATGGCGGGGGAGG+AGG | + | chr3.3:48815538-48815557 | MS.gene070289:CDS | 65.0% |
| !! | GATGATGGCGGGGGAGGAGG+TGG | + | chr3.3:48815541-48815560 | MS.gene070289:CDS | 70.0% |
| GGGGGAGGAGGTGGAGGTGG+AGG | + | chr3.3:48815550-48815569 | MS.gene070289:CDS | 75.0% | |
| !! | GATGGCGGGGGAGGAGGTGG+AGG | + | chr3.3:48815544-48815563 | MS.gene070289:CDS | 75.0% |
| ! | GGCGGGGGAGGAGGTGGAGG+TGG | + | chr3.3:48815547-48815566 | MS.gene070289:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48813658 | 48815687 | 48813658 | ID=MS.gene070289 |
| chr3.3 | mRNA | 48813658 | 48815687 | 48813658 | ID=MS.gene070289.t1;Parent=MS.gene070289 |
| chr3.3 | exon | 48813658 | 48813703 | 48813658 | ID=MS.gene070289.t1.exon1;Parent=MS.gene070289.t1 |
| chr3.3 | CDS | 48813658 | 48813703 | 48813658 | ID=cds.MS.gene070289.t1;Parent=MS.gene070289.t1 |
| chr3.3 | exon | 48814494 | 48814696 | 48814494 | ID=MS.gene070289.t1.exon2;Parent=MS.gene070289.t1 |
| chr3.3 | CDS | 48814494 | 48814696 | 48814494 | ID=cds.MS.gene070289.t1;Parent=MS.gene070289.t1 |
| chr3.3 | exon | 48815287 | 48815356 | 48815287 | ID=MS.gene070289.t1.exon3;Parent=MS.gene070289.t1 |
| chr3.3 | CDS | 48815287 | 48815356 | 48815287 | ID=cds.MS.gene070289.t1;Parent=MS.gene070289.t1 |
| chr3.3 | exon | 48815482 | 48815687 | 48815482 | ID=MS.gene070289.t1.exon4;Parent=MS.gene070289.t1 |
| chr3.3 | CDS | 48815482 | 48815687 | 48815482 | ID=cds.MS.gene070289.t1;Parent=MS.gene070289.t1 |
| Gene Sequence |
| Protein sequence |
