AlfalfaGEDB | MS.gene049599

M. sativa cultivar XinJiangDaYe / MS.gene049599

KEGG: K03063
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005737 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0016787 GO:0017076 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044238 GO:0071704 GO:0097159 GO:0097367 GO:0110165 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00004.32 PF16450.8 PF17862.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049599.t1	XP_003600548.1	100	415	0	0	1	415	1	415	7.90E-189	669.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049599.t1	P85200	98.8	335	4	0	81	415	80	414	9.7e-188	657.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049599.t1	G7IV48	100.0	415	0	0	1	415	1	415	5.7e-189	669.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049599	MS.gene049758	-0.872052	4.27E-67	-1.69E-46
MS.gene049599	MS.gene050301	-0.809896	1.51E-50	-1.69E-46
MS.gene049599	MS.gene050330	0.842547	2.42E-58	-1.69E-46
MS.gene049599	MS.gene05119	0.903736	2.55E-79	-1.69E-46
MS.gene049599	MS.gene051860	-0.801334	9.46E-49	-1.69E-46
MS.gene049599	MS.gene052078	-0.806328	8.68E-50	-1.69E-46
MS.gene049599	MS.gene052309	0.831415	1.69E-55	-1.69E-46
MS.gene049599	MS.gene053836	-0.837723	4.39E-57	-1.69E-46
MS.gene049599	MS.gene054473	-0.818773	1.65E-52	-1.69E-46
MS.gene049599	MS.gene054542	-0.815756	7.85E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene002648	MS.gene049599	PPI
MS.gene002921	MS.gene049599	PPI
MS.gene004328	MS.gene049599	PPI
MS.gene005257	MS.gene049599	PPI
MS.gene005258	MS.gene049599	PPI
MS.gene005995	MS.gene049599	PPI
MS.gene00848	MS.gene049599	PPI
MS.gene011376	MS.gene049599	PPI
MS.gene012127	MS.gene049599	PPI
MS.gene012996	MS.gene049599	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049599.t1	MTR_3g062510	99.518	415	2	0	1	415	1	415	0.0	847
MS.gene049599.t1	MTR_3g062510	99.417	343	2	0	1	343	1	343	0.0	696
MS.gene049599.t1	MTR_1g069105	50.970	361	173	2	41	398	68	427	2.50e-131	385
MS.gene049599.t1	MTR_7g099640	50.416	361	175	2	41	398	67	426	1.04e-130	384
MS.gene049599.t1	MTR_7g099640	50.997	351	168	2	41	388	67	416	6.75e-129	378
MS.gene049599.t1	MTR_1g069105	52.443	307	142	2	41	344	68	373	5.07e-113	337
MS.gene049599.t1	MTR_4g094270	46.866	335	177	1	73	406	70	404	2.25e-104	315
MS.gene049599.t1	MTR_1g083330	38.142	409	232	2	27	414	14	422	1.90e-103	313
MS.gene049599.t1	MTR_4g033235	37.471	435	239	4	1	414	1	423	9.20e-103	311
MS.gene049599.t1	MTR_3g112260	42.857	350	197	1	55	401	29	378	4.05e-100	304

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049599.t1	AT5G58290	92.252	413	20	2	4	415	7	408	0.0	775
MS.gene049599.t1	AT4G29040	49.740	384	185	4	18	398	46	424	2.31e-132	388
MS.gene049599.t1	AT2G20140	49.479	384	186	4	18	398	46	424	1.16e-131	386
MS.gene049599.t1	AT5G19990	46.903	339	178	2	73	410	14	351	5.59e-105	315
MS.gene049599.t1	AT5G20000	45.013	371	199	4	41	410	43	409	8.57e-105	317
MS.gene049599.t1	AT5G19990	44.474	371	204	2	41	410	40	409	1.04e-104	316
MS.gene049599.t1	AT5G19990	44.474	371	204	2	41	410	40	409	1.04e-104	316
MS.gene049599.t1	AT1G53750	53.704	270	125	0	127	396	133	402	5.83e-104	315
MS.gene049599.t1	AT1G09100	38.142	409	232	2	27	414	14	422	4.02e-103	312
MS.gene049599.t1	AT3G05530	38.142	409	232	2	27	414	15	423	5.15e-103	312

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Find 107 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATCACGAACCATTC+GGG	0.352078	3.2:+58752058	None:intergenic
AACAAATCGTGCAGACACTT+TGG	0.518337	3.2:-58751663	MS.gene049599:CDS
AACACATCACGAACCATTCG+GGG	0.667959	3.2:+58752059	None:intergenic
AACCATCGCGGAGGAACCCA+TGG	0.553976	3.2:+58755529	None:intergenic
AACCATGGGTTCCTCCGCGA+TGG	0.502713	3.2:-58755531	None:intergenic
AACCCTGATGAAAGCAGCAG+TGG	0.632358	3.2:+58753639	None:intergenic
AAGATACTTCTGCACAAACT+CGG	0.590374	3.2:+58753609	None:intergenic
AAGTCTTCCAGGACGCAAGA+GGG	0.648990	3.2:+58751634	None:intergenic
AATGAATTTGAGTGATGAAG+TGG	0.534248	3.2:-58750562	MS.gene049599:CDS
ACGCGAGCTTCTTCGTGCTC+AGG	0.470975	3.2:-58755330	MS.gene049599:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGGGGCAGTTTATT+AGG	-	chr3.2:58753479-58753498	MS.gene049599:intron	30.0%
AAGAGATCAAAACCATATCA+AGG	+	chr3.2:58751540-58751559	None:intergenic	30.0%
AATCTGTCACAGTAATGAAA+AGG	-	chr3.2:58755052-58755071	MS.gene049599:intron	30.0%
AATGAATTTGAGTGATGAAG+TGG	-	chr3.2:58754813-58754832	MS.gene049599:intron	30.0%
ACTGTTCTATCAATTTGGTT+TGG	+	chr3.2:58753950-58753969	None:intergenic	30.0%
AGACTATTAATAACTTACCC+GGG	-	chr3.2:58755007-58755026	MS.gene049599:intron	30.0%
AGAGATCAAAACCATATCAA+GGG	+	chr3.2:58751539-58751558	None:intergenic	30.0%
AGGCAATTTCAATTGGAAAA+AGG	+	chr3.2:58752446-58752465	None:intergenic	30.0%
ATCTGATTATCATAATGTGG+CGG	+	chr3.2:58753007-58753026	None:intergenic	30.0%
ATGTCATTGTCTCAATTTAG+CGG	+	chr3.2:58750981-58751000	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	58749848	58755549	58749848	ID=MS.gene049599
chr3.2	mRNA	58749848	58755549	58749848	ID=MS.gene049599.t1;Parent=MS.gene049599
chr3.2	exon	58755064	58755549	58755064	ID=MS.gene049599.t1.exon1;Parent=MS.gene049599.t1
chr3.2	CDS	58755064	58755549	58755064	ID=cds.MS.gene049599.t1;Parent=MS.gene049599.t1
chr3.2	exon	58753603	58753833	58753603	ID=MS.gene049599.t1.exon2;Parent=MS.gene049599.t1
chr3.2	CDS	58753603	58753833	58753603	ID=cds.MS.gene049599.t1;Parent=MS.gene049599.t1
chr3.2	exon	58751926	58752084	58751926	ID=MS.gene049599.t1.exon3;Parent=MS.gene049599.t1
chr3.2	CDS	58751926	58752084	58751926	ID=cds.MS.gene049599.t1;Parent=MS.gene049599.t1
chr3.2	exon	58751577	58751729	58751577	ID=MS.gene049599.t1.exon4;Parent=MS.gene049599.t1
chr3.2	CDS	58751577	58751729	58751577	ID=cds.MS.gene049599.t1;Parent=MS.gene049599.t1
chr3.2	exon	58750515	58750598	58750515	ID=MS.gene049599.t1.exon5;Parent=MS.gene049599.t1
chr3.2	CDS	58750515	58750598	58750515	ID=cds.MS.gene049599.t1;Parent=MS.gene049599.t1
chr3.2	exon	58749848	58749982	58749848	ID=MS.gene049599.t1.exon6;Parent=MS.gene049599.t1
chr3.2	CDS	58749848	58749982	58749848	ID=cds.MS.gene049599.t1;Parent=MS.gene049599.t1

Gene Sequence

>MS.gene049599

ATGGGTTCCTCCGCGATGGTTCTCGATCCAAAACCCCTCACCGAACCACCACCTTCCCTTTCTTTCTCCTCCCCCACCGACACCGATTCCTCCTCCACCTCCGACGACCTCTACACTCTCCTCAAATCCCTCCAACGCCAACTCGAATTCATCGATATCCAAGAAGAGTACGTCAAAGACGAACAAAAGAATCTCAAACGCGAGCTTCTTCGTGCTCAGGAAGAAGTCAAACGGATCCAATCGGTTCCTCTTGTGATCGGTCAGTTTATGGAGATGGTTGATACCAATAACGGGATTGTTGGATCTACTACTGGGTCGAATTATTATGTGAGGATTTTGAGTACGATTAATCGGGAGCTTTTGAAACCGTCGGCTTCGGTTGCGCTTCATCGTCATTCGAATGCTCTTGTTGATGTTCTTCCACCGGAAGCTGATTCCAGTATCTCGCTTCTTAGTCAGTCTGAGAAGCCTGATGTTACTTATAATGTTAGTCTGTTTATGATTTTCGTAATTTTTTTTATTGGGTTATTTTTTTATTGAATTGCTAAATCTAGGGTTTTGATTATATGAATTCCTTCAATTACAGTTGTAAACGATTGATTGTTAGGTTAGTTGCGGCGAAAACTAGGGTTTTTGTATATATTTCTAATTTTCAATTGGGATTTGATTATTAGGTTTAGGGCCTGTTTTGATTGGCTATTTGGGCTTATATACTGTCATAAGTTTTGAGAGACAGTTTGAGAGAACTTATGAAAACAGCTTATGACATTGTTCAAAGCTATTTTCAACTTATTTTCGTAAGTTGTTTATCCAAATAGGCTCTAGGTTTAGTTGCTGGGATTACTCTGAATTTATCCAAATAGGCCCTAGATCTAAATATGATTTTAGTTCCTGCAATTATAGTATTTTTGATTTTGGTTGCATAAGTTTGTTTTGTTTGAATTACGTCTGCAAATTCAAAGACTATTGCTTTTAGTCTTGATGTTGGCTTATTGGGCCACATAGTATGATTTTATCGGGTCACACATGATGTTAGAGACTAAAAGCAACAATTTTTGAACTTACATGACTAAAACCCAAAAAAACACTATAATTGCTTGCTATGATGCATGGACACTGACACGTTGACACCGCTAAATTGAGACAATGACATAGTTCAATGTAATCACGTGTCGGTGTCAGACACGGGACACGCCTTCGATCAATAGTGTCTTTGCCACAGCAATTGCAAGGACTAAAATCATATTTAAACCATTAAAGATTGGAGTGGACACACAAACACACACTGAATATGTATATATGTTAGAGAGAAATGTCAGACAGTTACACTTAACAGTGCGAGACATTGAAAAATGTTGAGTTTATTTGGGAGAATTCAAGTGTCTTTGGTCGGTAGTTGCAATATAAGCTGGAAAGATATGCCCGTACTTTAATAGTGGAGAGCAATACTTGTAGATGAGCTCGGGGGAGTTTCTATTGGTAGCTTGTGATCCTGGTTCTCATGCCTGAGGTTACAAATATAGTTCAAATTATAGTTCAAATTGTATGCTAAATTATTGATTCTAGGGGATTGTGGGGAAGTTACGTTGAAACTGAAAGTATAGGTCATTATGAGGAAGATGAGAGCTTATAATGTTTTGTATGTACTGTTGTCATTTTAAACTATATTTTTGTGGCCTGACCATTCTCCCTTGATATGGTTTTGATCTCTTTTAGGATATTGGAGGATGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCTCTCACGCATCACGAGCTATACAAACAAATTGGTATTGATCCACCTCGAGGTGTTTTACTATATGGCCCCCCTGGAACTGGCAAAACAATGCTTGCCAAAGCTGTTGCTAATCATACCACTGCTGCTTTCATCAGGGTTGTGGGATCCGAGTTTGTGCAGAAGTATCTTGGAGAGGTATGAATTTCTGTCTTTACAGTTGAAGTGACGACAAAGTTGTAATTTAGCTGTCTTTGTTTACTGTTGAAGATTCTCTGTTTCAGATTCCTAACTTTCAATATTACTGTGCTCTTTGTATTTTGCTCCGTAAAGGTTTATCATATATACTTTATTGGGATTACTTGAAATAAAATCTGTATTGTGAACTGTTAAAGAAAATCAAAATTCAAAGTGTCTCCCTTATAGAAGCGATACAAAATAAATTGAACAAAGTTATCTGATTATCTACATTTCTAAAAATAGGAAAATATACTTTATTAGTTTTTTCCAGTATTGATATTTATGCTATTCAAGCCCTATTCTCTAGTACATAGAATTTGGAACATTTTTTGACTCTGTCAAAACTCCTCAAGCTAGCTTGATAATGTCTTTGCATAGTAGACAGCTTGCTAACTAAGCTTTCAGTTTTCCCGTTTGGCCAAATGTCTCTGGATAATGAATTCCAAAGGTTTGCGTAAAACCTTTAACTAACTGATTTTTATATTTGTACTCTTACATTAGTTTTGCATTTGATGCCAAACATCCCTTTTGTTACCTACCGTCTTCTTATTTCATGGAAAGTTAACTAAGTTTCATTTGAAAAGCTTTCATCTCCTCCATCATTGCCCTTTTTCCAATTGAAATTGCCTAGAGCTTTTGCGATGTTTCTTTTAATAGACTGTATAGATATTTGAGTGACGGAAAACTTCTTGGTTATGTGTCACAATGATGTGTTACAGATTTTTTTATGACATTTTTGTAATAGGCTGAGAGTACATGCCCTATATCTTTTCCTAACATATAAGGAATAGCACTATGAGAAACAGAATTGGAAAGATCTTTCTTACATTAGATATTTGAGTGACGGAAAACTTCTTGGTTACGTGTCACAATGATGTGTTACAGATTTTTTTATGACATTTTTGTAATAGGCTGAGAGTACATGCCCTATATCTTTTCCTAACATATAAGGAATAGCACTATGAGAAACAGAATTGGAAAGATCTTTCTTACATAAAACATATAAAGTTCAGTACTTTCTAGAGTTGATTGGTCTTGTTCTTGGCCGACATATTGGATAATTTAAATCAAGAAGATTGGAGTGTATTAACAGACCTTTAGTATTAACTGACAAAAATCTTCCACAGAGTTGGTTGGTCATAAAATTCCTTAGTTTTCTTTCAGTTTCCGCCACATTATGATAATCAGATGCAACTGTCTGATTATCTACATCCTAAAAAGTGAAATTTTATACTTATCTGCATTTATCTTATTTATCGCCCCCTATTTCCTGGACTTCGAATTTGAAAAATCTTGACTTTTTTTAACCGGATTTCATTGGTATGTATGCTGTATTGAGTCCATGTGTATAACCAGTACTCTTCCCGAAGCCTCCTCAGAGTTTCAAAACTCATTATCTTCATGAAAGAAGAATAAAATTTTGTAGCAAAAGTTTACTGCTCCATTTTGTAATCTTTTCTTTCATTTATATTTCAGGGTCCCCGAATGGTTCGTGATGTGTTTCGTCTTGCAAAAGAAAACGCCCCTGCAATTATATTTATCGATGAGGTAGATGCGATAGCTACTGCTAGATTTGATGCCCAAACCGGAGCTGATAGAGAAGTACAGCGTATCCTCATGGAACTTTTGAATCAGGTATAAAAAAAAAAGGGGCAGTTTATTAGGTATCTCTATGAAAAATACCTCTATTGTTCTCTCAGGTGTTGTGAGTTGCAGTGTATTAGGCTGCTGATCCACATTGATTTAATGTCCTATACTCTTCGATTTGACTACATTTCCGCTCTTGTTTTAAATACTCTCTGATGTTCTGGTTAAACTTTTTTTTTATTAGATGGACGGTTTTGACCAGACCGTGAATGTTAAAGTCATAATGGCAACAAATCGTGCAGACACTTTGGATCCTGCCCTCTTGCGTCCTGGAAGACTTGATCGTAAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTATTTCAGGCAAGACTTTTTATATTTTTATATGTTATAGTTATGTATGCTATAGTTTTGAGTCACTATTCCATGTTTATAGTCAATAATAGGTAGCCTGTTCATGGTTTGGTTCGGAAAGAAAACTGAACTGAACCAAACCAAATTGATAGAACAGTTAAAAAAAACTGAACTGAATTGGTAATTTGTTCTGAACCGAACTTCCATAACAGTTCAGTGAACTGGTTCAGTATTACGAACCGAACCGAACCAACATAGATTTGAAAAGGAGAAAGAGAGAGAGGATCGATGCAAGTGTCAAAGCTAAAAGCAGATAAAACCCATCAAAGCAAAAGCAGATAAAACCCATAAAAATTATGAAAAAAGAATATCAAATTTGTGCATCAGACATTGTTTGTAAAAAACCAAATGTAATGGAGCGTAACTGTAACACTCAAACAGAAGAAAACGAAGGGACTAGGATTGTGATTCACGGCGTTGGGAATGGTTTTCACGGCAGAGATTCCATTCATAACGGTGAAATTGGCGATGTCACTGCATTTGAGACAGCGAGTGGTGACAATGCTTCAGTTCTAATTTGGATTTTAGGGCTCTTTGATTAGTTATTTTTTGGTTCTCTAATGTTAGGATTTGTTTAATTTAATTACGTTTGGCTGATTTGAGTTTTGGTTTTAAGAATTTGTGATGGTTTGGTTATCTTACCGTTTGGTTCCAGTTTCAAATAAATGGCTCAGTAAACTAACTGTTTTGGTAAACGTAGTTCGGTTTTCAATATTATAAACCGGTTCGTGCTAAAAATGTTTCATTTCAGTTCTCCAGTTTGGTTTTATGGTTTTTTTTAACACCCCTAATAATAGGTCATTTTATGTTTCATGAGTGAGAATTTTAGTTTTTTTTTGCAAACTTTTAGTGGCTTAATTTTGAACTAATTAATAGTTTAGTTTCAGCTGTGCTCTAGCCTATTATTTGATAGTTCACTTGTAACAGGTTTGCACAGCCAAAATGAATTTGAGTGATGAAGTGGACCTGGAAGATTATGTTTCCCGCCCTGACAAAATTAGTGCTGCTGAGGTTTGTTCATGTCTAATAAATTATGTTCGTGATTTTTTGTTTTTATGTAAGCCATGAATTTGAATATTTTTTACTATCAAAATATATTGTTTTTCACTTCCATCATCTTGTGAGGTTTATAACAAGACTATTAATAACTTACCCGGGGAGTAGTTGGTAGCTTCTTTAGAATCTGTCACAGTAATGAAAAGGAGTTGCTAGTTTGATTGTTTCTCATGAACTGAAAATTGGTGTTATGCTGTGGAGGACTTGGTTCTTCTGAGCTTAAAACGTTTCAGAAACTTGCAAATTTCAGATAAATTATTGTAACTTGTAACTTAAAATGTTCGACATTGAAAGAAAATAATGTCAGTGCTGCTATAAAATAAGGAAATATTAGATTGCTTGGACGTAACTTTATGCGCTTAAATTTAAGTTGCAACTTTTTTTGTCAACTCCATTTAACAGATTGCTGTGAGATGAAAGACAATAACCAAACCTTTTAGAAATTTGTCTGCATTAATGATTTATTTGATGATTGTTGGTGCTGCAGATATCTGCTATTTGTCAAGAAGCAGGAATGCATGCTGTTCGTAAGAATAGATATGTCATACTACCAAAGGACTTTGAGAAAGGTTATAGGACCAATGTGAAGAAGCCCGATACTGACTTTGAATTTTACAAGTGA

Protein sequence

>MS.gene049599.t1

MGSSAMVLDPKPLTEPPPSLSFSSPTDTDSSSTSDDLYTLLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEISAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK