Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07040.t1 | XP_003625953.1 | 97.4 | 576 | 9 | 2 | 1 | 572 | 1 | 574 | 1.60E-293 | 1018.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07040.t1 | G7KSS0 | 97.4 | 576 | 9 | 2 | 1 | 572 | 1 | 574 | 1.2e-293 | 1018.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052774 | MS.gene07040 | 0.857258 | 1.84E-62 | -1.69E-46 |
| MS.gene059061 | MS.gene07040 | 0.836442 | 9.34E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07040.t1 | MTR_7g109360 | 98.090 | 576 | 5 | 2 | 1 | 572 | 1 | 574 | 0.0 | 1151 |
| MS.gene07040.t1 | MTR_7g109360 | 97.976 | 494 | 4 | 2 | 83 | 572 | 1 | 492 | 0.0 | 992 |
| MS.gene07040.t1 | MTR_7g109360 | 99.043 | 418 | 2 | 1 | 155 | 572 | 31 | 446 | 0.0 | 850 |
| MS.gene07040.t1 | MTR_1g087270 | 69.646 | 593 | 159 | 6 | 1 | 572 | 1 | 593 | 0.0 | 794 |
| MS.gene07040.t1 | MTR_3g102140 | 53.252 | 492 | 190 | 9 | 2 | 477 | 5 | 472 | 2.84e-165 | 479 |
| MS.gene07040.t1 | MTR_1g038470 | 62.838 | 148 | 52 | 1 | 290 | 437 | 56 | 200 | 3.06e-57 | 191 |
| MS.gene07040.t1 | MTR_4g076240 | 24.045 | 445 | 254 | 10 | 24 | 462 | 657 | 1023 | 5.53e-20 | 94.7 |
| MS.gene07040.t1 | MTR_7g090940 | 26.891 | 238 | 153 | 6 | 232 | 462 | 926 | 1149 | 2.64e-19 | 92.8 |
| MS.gene07040.t1 | MTR_8g064220 | 71.739 | 46 | 13 | 0 | 48 | 93 | 17 | 62 | 4.46e-15 | 70.5 |
| MS.gene07040.t1 | MTR_8g064210 | 65.517 | 58 | 20 | 0 | 23 | 80 | 145 | 202 | 4.14e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07040.t1 | AT4G02100 | 63.445 | 569 | 172 | 7 | 12 | 572 | 6 | 546 | 0.0 | 697 |
| MS.gene07040.t1 | AT2G47440 | 64.298 | 563 | 153 | 7 | 12 | 572 | 10 | 526 | 0.0 | 682 |
| MS.gene07040.t1 | AT2G47440 | 64.014 | 553 | 151 | 7 | 22 | 572 | 9 | 515 | 0.0 | 662 |
| MS.gene07040.t1 | AT3G62570 | 57.913 | 575 | 214 | 8 | 3 | 572 | 1 | 552 | 0.0 | 629 |
| MS.gene07040.t1 | AT1G02650 | 54.000 | 550 | 211 | 4 | 16 | 565 | 6 | 513 | 0.0 | 557 |
| MS.gene07040.t1 | AT1G02650 | 53.875 | 542 | 208 | 4 | 24 | 565 | 11 | 510 | 0.0 | 545 |
| MS.gene07040.t1 | AT5G12430 | 27.636 | 275 | 172 | 6 | 227 | 489 | 867 | 1126 | 1.72e-22 | 102 |
| MS.gene07040.t1 | AT2G41520 | 22.523 | 444 | 252 | 10 | 46 | 480 | 606 | 966 | 5.52e-17 | 85.5 |
| MS.gene07040.t1 | AT2G41520 | 22.523 | 444 | 252 | 10 | 46 | 480 | 706 | 1066 | 6.40e-17 | 85.1 |
| MS.gene07040.t1 | AT2G41520 | 27.273 | 209 | 130 | 5 | 280 | 480 | 841 | 1035 | 3.20e-12 | 70.1 |
Find 117 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTGGTGGGTTGTTGGTTT+GGG | 0.142222 | 7.2:+5518422 | None:intergenic |
| ATGAAGTTTGTAGCTTTATC+TGG | 0.240274 | 7.2:+5517788 | None:intergenic |
| CAACATCTTTGAATCTTCTT+AGG | 0.241704 | 7.2:+5519768 | None:intergenic |
| GGTGAAGCATGCTGCCATTT+AGG | 0.252385 | 7.2:-5518574 | MS.gene07040:CDS |
| GGTGTGGTGGGTTGTTGGTT+TGG | 0.252636 | 7.2:+5518421 | None:intergenic |
| GTGAATCCTGCGGTGTTTAA+AGG | 0.269571 | 7.2:-5517452 | MS.gene07040:CDS |
| TTGTAGCTTTATCTGGCTTA+TGG | 0.319016 | 7.2:+5517795 | None:intergenic |
| TTCATTGTTGTTGTATAGAT+TGG | 0.327452 | 7.2:-5517702 | MS.gene07040:CDS |
| TTTCAATTCTTGAATCTTAG+TGG | 0.334226 | 7.2:+5517931 | None:intergenic |
| TTCTTGAATCTTAGTGGTTA+AGG | 0.343497 | 7.2:+5517937 | None:intergenic |
| TTGATCCAAACGCGGTGATA+TGG | 0.349593 | 7.2:+5519823 | None:intergenic |
| CATCCTCCATCAGTCCTAAA+TGG | 0.364318 | 7.2:+5518560 | None:intergenic |
| GTGGCGGTGTGGTGGGTTGT+TGG | 0.365856 | 7.2:+5518416 | None:intergenic |
| TGGGTGTTCCCGTTCTGAAT+TGG | 0.369585 | 7.2:-5517846 | MS.gene07040:CDS |
| GAATTGCTAGCGCAGCATTC+CGG | 0.370872 | 7.2:-5518510 | MS.gene07040:CDS |
| TGTGTGCAGATACTTGGTTT+TGG | 0.377172 | 7.2:-5518596 | MS.gene07040:intron |
| CAAGTGCTTGAATGCAGGTT+GGG | 0.381214 | 7.2:+5518128 | None:intergenic |
| AGGGGCTCGTGGCGGTGTGG+TGG | 0.390479 | 7.2:+5518408 | None:intergenic |
| TCATTCGCCATTCTCAAACT+TGG | 0.391758 | 7.2:+5519722 | None:intergenic |
| TCTAAATCGTGAAGTGAATC+AGG | 0.407704 | 7.2:+5518067 | None:intergenic |
| GTTGATTACTATGCATTGAT+TGG | 0.409360 | 7.2:-5517878 | MS.gene07040:CDS |
| TTTAGCCATATCACCGCGTT+TGG | 0.415618 | 7.2:-5519828 | MS.gene07040:CDS |
| CAGCTGCACGACGGCGGAGG+AGG | 0.424219 | 7.2:+5518338 | None:intergenic |
| TGATCTTAAGAAGAAGGTTA+TGG | 0.427625 | 7.2:-5519585 | MS.gene07040:CDS |
| TGCTTCGAAGAGTGAAGCTC+TGG | 0.428658 | 7.2:+5518102 | None:intergenic |
| GGGGCTCGTGGCGGTGTGGT+GGG | 0.431108 | 7.2:+5518409 | None:intergenic |
| CACTTTCTGTTTCGTTGAGA+GGG | 0.431292 | 7.2:+5518389 | None:intergenic |
| TTTGGGGTGTCTCCAGCCAA+TGG | 0.436063 | 7.2:+5518439 | None:intergenic |
| TTACGTGATCGTAAACTTCC+CGG | 0.441406 | 7.2:-5518016 | MS.gene07040:CDS |
| TTACATTCCAAGTTTGAGAA+TGG | 0.442091 | 7.2:-5519729 | MS.gene07040:CDS |
| TGTTTCTGATCTTAAGAAGA+AGG | 0.445367 | 7.2:-5519591 | MS.gene07040:CDS |
| AGCTCTTTCCAATTCAGAAC+GGG | 0.445368 | 7.2:+5517838 | None:intergenic |
| GTGGCGTTTCCATGCTGGAC+CGG | 0.445828 | 7.2:+5517997 | None:intergenic |
| TGTGGTGGGTTGTTGGTTTG+GGG | 0.447654 | 7.2:+5518423 | None:intergenic |
| TTGAAACAAAGATTATCTTC+TGG | 0.452233 | 7.2:-5517914 | MS.gene07040:CDS |
| TCCTCTATTAACTATCCCAT+TGG | 0.455666 | 7.2:-5518455 | MS.gene07040:CDS |
| ACATTGTGGCGTTTCCATGC+TGG | 0.457036 | 7.2:+5517992 | None:intergenic |
| TGATTGTGTGTGCAGATACT+TGG | 0.457505 | 7.2:-5518602 | MS.gene07040:intron |
| GCAATGGTTCTTCTCCAAAC+AGG | 0.463178 | 7.2:-5518538 | MS.gene07040:CDS |
| ACTCGGCGAGGAAGCCTTGT+GGG | 0.463578 | 7.2:+5518236 | None:intergenic |
| GCTTCATACTTCACCGGCAT+TGG | 0.464103 | 7.2:+5517368 | None:intergenic |
| GGTTTCAAGTGCTTGAATGC+AGG | 0.468380 | 7.2:+5518123 | None:intergenic |
| CATTGAAAGGTGTGAATTTG+CGG | 0.472539 | 7.2:-5517768 | MS.gene07040:CDS |
| ACGATTTAATCGACCAATGC+CGG | 0.474881 | 7.2:-5517381 | MS.gene07040:CDS |
| GTAAAAGTTGTGAGAAAGAA+GGG | 0.487805 | 7.2:-5519553 | MS.gene07040:CDS |
| TCAAGTGCTTGAATGCAGGT+TGG | 0.488120 | 7.2:+5518127 | None:intergenic |
| GCATCTGCACACCGTTCTGC+TGG | 0.492922 | 7.2:-5518199 | MS.gene07040:CDS |
| TTGGGGTGTCTCCAGCCAAT+GGG | 0.495456 | 7.2:+5518440 | None:intergenic |
| ACGTGATATTGATACTGTTA+AGG | 0.496784 | 7.2:-5517741 | MS.gene07040:CDS |
| TGTAAAAGTTGTGAGAAAGA+AGG | 0.497562 | 7.2:-5519554 | MS.gene07040:CDS |
| GCTTCTTTCATCTGATTCAC+CGG | 0.497678 | 7.2:-5519642 | MS.gene07040:CDS |
| ACACTTTCTGTTTCGTTGAG+AGG | 0.500008 | 7.2:+5518388 | None:intergenic |
| TTTAAACACCGCAGGATTCA+CGG | 0.501985 | 7.2:+5517454 | None:intergenic |
| TGGCGTTTCCATGCTGGACC+GGG | 0.508257 | 7.2:+5517998 | None:intergenic |
| GCACTCGCTGCCCTCGACGC+TGG | 0.509640 | 7.2:-5518316 | MS.gene07040:CDS |
| GTGCAGCTGCACGACGGCGG+AGG | 0.510527 | 7.2:+5518335 | None:intergenic |
| GTTGTATAGATTGGTTCAGA+AGG | 0.512610 | 7.2:-5517693 | MS.gene07040:CDS |
| CTATTAACTATCCCATTGGC+TGG | 0.515604 | 7.2:-5518451 | MS.gene07040:CDS |
| GCGAATGAAGATCCTTCCTC+TGG | 0.518376 | 7.2:-5519707 | MS.gene07040:CDS |
| TCTGATAGTTCTTCTAGAGA+AGG | 0.518715 | 7.2:-5519671 | MS.gene07040:CDS |
| TGAGTAGAGACCAGCGTCGA+GGG | 0.518981 | 7.2:+5518306 | None:intergenic |
| GCCAATGGGATAGTTAATAG+AGG | 0.519008 | 7.2:+5518454 | None:intergenic |
| GTAAGATACAGAGAGATTCC+AGG | 0.519030 | 7.2:-5517971 | MS.gene07040:CDS |
| TTAAAGCTCTGATCTCGAAC+CGG | 0.521070 | 7.2:+5519623 | None:intergenic |
| ACCAGCAGACACTCTCTCTC+CGG | 0.522583 | 7.2:+5518491 | None:intergenic |
| CTCAATGCTTCATACTTCAC+CGG | 0.529803 | 7.2:+5517362 | None:intergenic |
| CTTAAGAAGAAGGTTATGGC+AGG | 0.531276 | 7.2:-5519581 | MS.gene07040:CDS |
| GTGAGAAAGAAGGGCAATGG+AGG | 0.534292 | 7.2:-5519544 | MS.gene07040:intron |
| TTGTATAGATTGGTTCAGAA+GGG | 0.541753 | 7.2:-5517692 | MS.gene07040:CDS |
| AAGCTACAAACTTCATTGAA+AGG | 0.553246 | 7.2:-5517781 | MS.gene07040:CDS |
| GAAGAAGAAGAACCAGAGGA+AGG | 0.559166 | 7.2:+5519695 | None:intergenic |
| AACACACCTTTAAACACCGC+AGG | 0.560265 | 7.2:+5517446 | None:intergenic |
| CACTCGGCGAGGAAGCCTTG+TGG | 0.560936 | 7.2:+5518235 | None:intergenic |
| GTTGTGAGAAAGAAGGGCAA+TGG | 0.562233 | 7.2:-5519547 | MS.gene07040:CDS |
| ATGCTGCCATTTAGGACTGA+TGG | 0.563097 | 7.2:-5518566 | MS.gene07040:CDS |
| AGGACTGATGGAGGATGCAA+TGG | 0.565558 | 7.2:-5518554 | MS.gene07040:CDS |
| GGAGGAATTTGATGTGGCTG+AGG | 0.569430 | 7.2:+5518356 | None:intergenic |
| GGTCGCCGTGCTGCCCCACA+AGG | 0.573594 | 7.2:-5518250 | MS.gene07040:CDS |
| TGCCGTGATCTTGCGGTGGT+AGG | 0.576750 | 7.2:-5517422 | MS.gene07040:CDS |
| TTCCTACCACCGCAAGATCA+CGG | 0.579572 | 7.2:+5517420 | None:intergenic |
| GGAAGCCTTGTGGGGCAGCA+CGG | 0.584047 | 7.2:+5518245 | None:intergenic |
| TACAAGAAGATATCAAAGGC+TGG | 0.584462 | 7.2:+5517477 | None:intergenic |
| TCCGGAGAGAGAGTGTCTGC+TGG | 0.585361 | 7.2:-5518492 | MS.gene07040:CDS |
| AGGAAGCTGCTGAGAAACAA+AGG | 0.590239 | 7.2:-5517637 | MS.gene07040:CDS |
| GGAATTTGATGTGGCTGAGG+AGG | 0.595613 | 7.2:+5518359 | None:intergenic |
| CGAGAAGATTCAAAGCTGAA+AGG | 0.596568 | 7.2:+5519858 | None:intergenic |
| TGCTCTGTGCATGTAGCACT+CGG | 0.598080 | 7.2:+5518219 | None:intergenic |
| CCGCTACAGAAAAGAAACAT+TGG | 0.598730 | 7.2:-5520189 | MS.gene07040:CDS |
| ACTTTCTGTTTCGTTGAGAG+GGG | 0.600446 | 7.2:+5518390 | None:intergenic |
| GAGCTCTTTCCAATTCAGAA+CGG | 0.612218 | 7.2:+5517837 | None:intergenic |
| CTACAGAAAAGAAACATTGG+TGG | 0.614005 | 7.2:-5520186 | MS.gene07040:CDS |
| GAGAGGGGCTCGTGGCGGTG+TGG | 0.615235 | 7.2:+5518405 | None:intergenic |
| AAGCTCTTGAGCTTAGAGCT+AGG | 0.620753 | 7.2:-5519802 | MS.gene07040:CDS |
| GTTTCGTTGAGAGGGGCTCG+TGG | 0.621457 | 7.2:+5518397 | None:intergenic |
| CTCGGCGAGGAAGCCTTGTG+GGG | 0.621473 | 7.2:+5518237 | None:intergenic |
| GGTAGGAAGCTTGTTGACGC+AGG | 0.623102 | 7.2:-5517405 | MS.gene07040:CDS |
| AGTGCGGTTACAATCAGCGA+TGG | 0.629036 | 7.2:+5518162 | None:intergenic |
| TTGGTGGCTCACAAACCGTA+AGG | 0.631059 | 7.2:-5520170 | MS.gene07040:intron |
| TTAAGAAGAAGGTTATGGCA+GGG | 0.636621 | 7.2:-5519580 | MS.gene07040:CDS |
| ACGGTACAAGAAGATATCAA+AGG | 0.644354 | 7.2:+5517473 | None:intergenic |
| GTAAACTTCCCGGTCCAGCA+TGG | 0.644733 | 7.2:-5518006 | MS.gene07040:CDS |
| CAGCGAGTGCAGCTGCACGA+CGG | 0.645174 | 7.2:+5518329 | None:intergenic |
| TCTCTCTGTATCTTACATTG+TGG | 0.650016 | 7.2:+5517978 | None:intergenic |
| GGCGGAGGAGGAATTTGATG+TGG | 0.651030 | 7.2:+5518350 | None:intergenic |
| TTCTTGTACCGTGAATCCTG+CGG | 0.652851 | 7.2:-5517462 | MS.gene07040:CDS |
| TGCATAGTAATCAACACTAG+TGG | 0.653769 | 7.2:+5517886 | None:intergenic |
| GCATTGATTGGAGTTCGACG+TGG | 0.654550 | 7.2:-5517866 | MS.gene07040:CDS |
| CTGAGTAGAGACCAGCGTCG+AGG | 0.660918 | 7.2:+5518305 | None:intergenic |
| TAATAGAGGAAAACTGTCGT+CGG | 0.664622 | 7.2:+5518468 | None:intergenic |
| CTGCAATTCGACCAGCAGAA+CGG | 0.668383 | 7.2:+5518188 | None:intergenic |
| CATTGATTGGAGTTCGACGT+GGG | 0.672757 | 7.2:-5517865 | MS.gene07040:CDS |
| CGAGTGCAGCTGCACGACGG+CGG | 0.675639 | 7.2:+5518332 | None:intergenic |
| TCGTTGAGAGGGGCTCGTGG+CGG | 0.683214 | 7.2:+5518400 | None:intergenic |
| CTGCCATTTAGGACTGATGG+AGG | 0.697675 | 7.2:-5518563 | MS.gene07040:CDS |
| TTGGGTCTAGTGAAAGAGTG+CGG | 0.726603 | 7.2:+5518146 | None:intergenic |
| TGTGCATGTAGCACTCGGCG+AGG | 0.731603 | 7.2:+5518224 | None:intergenic |
| TCAAGAGCTTGATCCAAACG+CGG | 0.749008 | 7.2:+5519815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACATCATTAACT+AGG | + | chr7.2:5517463-5517482 | None:intergenic | 15.0% |
| !! | AACTATTATTATGCAAAATT+CGG | + | chr7.2:5518803-5518822 | None:intergenic | 15.0% |
| !! | AAACACAAAACATTAACAAA+AGG | + | chr7.2:5517612-5517631 | None:intergenic | 20.0% |
| !! | ACACACAATCAAAATTATTT+AGG | + | chr7.2:5518958-5518977 | None:intergenic | 20.0% |
| !! | TAATAATAGTTTCACTGAAA+TGG | - | chr7.2:5518812-5518831 | MS.gene07040:intron | 20.0% |
| !! | TACTAGAAACAATATAAACT+TGG | + | chr7.2:5517562-5517581 | None:intergenic | 20.0% |
| !!! | AAAGACTATTTTTGATTGTA+TGG | - | chr7.2:5518745-5518764 | MS.gene07040:intron | 20.0% |
| !!! | ATTTGGAAGTTTTTTAGTAA+GGG | - | chr7.2:5518145-5518164 | MS.gene07040:CDS | 20.0% |
| !!! | TCAATTTGATTGATTTTTGT+GGG | + | chr7.2:5518868-5518887 | None:intergenic | 20.0% |
| !!! | TTCAATTTGATTGATTTTTG+TGG | + | chr7.2:5518869-5518888 | None:intergenic | 20.0% |
| ! | AAGGTTAATAATTGTTACCT+AGG | - | chr7.2:5518501-5518520 | MS.gene07040:CDS | 25.0% |
| ! | AGGTTAATAATTGTTACCTA+GGG | - | chr7.2:5518502-5518521 | MS.gene07040:CDS | 25.0% |
| ! | CATTTCTCAAAAATAGTAGA+CGG | - | chr7.2:5519298-5519317 | MS.gene07040:intron | 25.0% |
| ! | TTATTAACCTTTGTGATTGA+CGG | + | chr7.2:5518492-5518511 | None:intergenic | 25.0% |
| ! | TTGAAACAAAGATTATCTTC+TGG | - | chr7.2:5519655-5519674 | MS.gene07040:CDS | 25.0% |
| ! | TTTCAATTCTTGAATCTTAG+TGG | + | chr7.2:5519641-5519660 | None:intergenic | 25.0% |
| !! | ATTTGTTACTCTTTCTATAC+AGG | - | chr7.2:5518282-5518301 | MS.gene07040:CDS | 25.0% |
| !! | TCAAATTGAATGTTTTTCCT+TGG | - | chr7.2:5518879-5518898 | MS.gene07040:intron | 25.0% |
| !! | TCATTTCATTTTCTTCAATG+TGG | - | chr7.2:5518172-5518191 | MS.gene07040:CDS | 25.0% |
| !! | TTCATTGTTGTTGTATAGAT+TGG | - | chr7.2:5519867-5519886 | MS.gene07040:CDS | 25.0% |
| !!! | CATTTGGAAGTTTTTTAGTA+AGG | - | chr7.2:5518144-5518163 | MS.gene07040:CDS | 25.0% |
| !!! | GTTTTTTTGTTGTCGTTAAA+TGG | - | chr7.2:5518908-5518927 | MS.gene07040:intron | 25.0% |
| !!! | TAAGAGTAGTAATGTTTTTG+TGG | - | chr7.2:5520062-5520081 | MS.gene07040:intron | 25.0% |
| AACAAAAAAACCATTCACCA+AGG | + | chr7.2:5518899-5518918 | None:intergenic | 30.0% | |
| AAGCTACAAACTTCATTGAA+AGG | - | chr7.2:5519788-5519807 | MS.gene07040:CDS | 30.0% | |
| ACGTGATATTGATACTGTTA+AGG | - | chr7.2:5519828-5519847 | MS.gene07040:CDS | 30.0% | |
| CAACATCTTTGAATCTTCTT+AGG | + | chr7.2:5517804-5517823 | None:intergenic | 30.0% | |
| CTTTCATCTTCTATTGTCAA+TGG | - | chr7.2:5518639-5518658 | MS.gene07040:intron | 30.0% | |
| GTAAAAGTTGTGAGAAAGAA+GGG | - | chr7.2:5518016-5518035 | MS.gene07040:CDS | 30.0% | |
| TGATCTTAAGAAGAAGGTTA+TGG | - | chr7.2:5517984-5518003 | MS.gene07040:CDS | 30.0% | |
| TGTAAAAGTTGTGAGAAAGA+AGG | - | chr7.2:5518015-5518034 | MS.gene07040:CDS | 30.0% | |
| TGTGTGAAAATGTTACCTTA+CGG | + | chr7.2:5517417-5517436 | None:intergenic | 30.0% | |
| TTACATTCCAAGTTTGAGAA+TGG | - | chr7.2:5517840-5517859 | MS.gene07040:CDS | 30.0% | |
| TTCTTGAATCTTAGTGGTTA+AGG | + | chr7.2:5519635-5519654 | None:intergenic | 30.0% | |
| ! | GTTGATTACTATGCATTGAT+TGG | - | chr7.2:5519691-5519710 | MS.gene07040:CDS | 30.0% |
| ! | TAGCAATTCTTTTTCCTGTT+TGG | + | chr7.2:5519048-5519067 | None:intergenic | 30.0% |
| ! | TGTTTCTGATCTTAAGAAGA+AGG | - | chr7.2:5517978-5517997 | MS.gene07040:CDS | 30.0% |
| ! | TTGTATAGATTGGTTCAGAA+GGG | - | chr7.2:5519877-5519896 | MS.gene07040:CDS | 30.0% |
| ! | TTTGAAATCTGTCTCTCATT+TGG | - | chr7.2:5518128-5518147 | MS.gene07040:CDS | 30.0% |
| !! | ATGAAGTTTGTAGCTTTATC+TGG | + | chr7.2:5519784-5519803 | None:intergenic | 30.0% |
| !! | GATGAGTAATGTTTTAGATG+AGG | - | chr7.2:5519912-5519931 | MS.gene07040:CDS | 30.0% |
| !! | TATTTTTGAGAAATGGCGAA+TGG | + | chr7.2:5519293-5519312 | None:intergenic | 30.0% |
| !!! | CGTCTACTATTTTTGAGAAA+TGG | + | chr7.2:5519300-5519319 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGTTGCAGATTG+TGG | - | chr7.2:5517633-5517652 | MS.gene07040:CDS | 30.0% |
| AATTATTCACATGTGCACTG+AGG | - | chr7.2:5518455-5518474 | MS.gene07040:CDS | 35.0% | |
| ACGGTACAAGAAGATATCAA+AGG | + | chr7.2:5520099-5520118 | None:intergenic | 35.0% | |
| AGCTGAGCTGAAAAATAACA+AGG | - | chr7.2:5520032-5520051 | MS.gene07040:intron | 35.0% | |
| CAATCTGATCTCACACAAAT+AGG | + | chr7.2:5518252-5518271 | None:intergenic | 35.0% | |
| CTACAGAAAAGAAACATTGG+TGG | - | chr7.2:5517383-5517402 | MS.gene07040:CDS | 35.0% | |
| GAGACAATGCATTGTAGAAA+TGG | + | chr7.2:5518620-5518639 | None:intergenic | 35.0% | |
| GAGATAATGCATTCTTGAAG+TGG | - | chr7.2:5518671-5518690 | MS.gene07040:intron | 35.0% | |
| TAATAGAGGAAAACTGTCGT+CGG | + | chr7.2:5519104-5519123 | None:intergenic | 35.0% | |
| TACAAGAAGATATCAAAGGC+TGG | + | chr7.2:5520095-5520114 | None:intergenic | 35.0% | |
| TAGGGAAATTCTTGGTTGTA+GGG | - | chr7.2:5518520-5518539 | MS.gene07040:CDS | 35.0% | |
| TCCTCTATTAACTATCCCAT+TGG | - | chr7.2:5519114-5519133 | MS.gene07040:intron | 35.0% | |
| TCTAAATCGTGAAGTGAATC+AGG | + | chr7.2:5519505-5519524 | None:intergenic | 35.0% | |
| TCTCTCTGTATCTTACATTG+TGG | + | chr7.2:5519594-5519613 | None:intergenic | 35.0% | |
| TGCATAGTAATCAACACTAG+TGG | + | chr7.2:5519686-5519705 | None:intergenic | 35.0% | |
| TTAAGAAGAAGGTTATGGCA+GGG | - | chr7.2:5517989-5518008 | MS.gene07040:CDS | 35.0% | |
| TTCAATGCACGACAAAAAGT+TGG | - | chr7.2:5518395-5518414 | MS.gene07040:CDS | 35.0% | |
| TTGTTACCTAGGGAAATTCT+TGG | - | chr7.2:5518512-5518531 | MS.gene07040:CDS | 35.0% | |
| TTTCTTCAATGTGGAGTTTC+TGG | - | chr7.2:5518181-5518200 | MS.gene07040:CDS | 35.0% | |
| ! | CATTGAAAGGTGTGAATTTG+CGG | - | chr7.2:5519801-5519820 | MS.gene07040:CDS | 35.0% |
| ! | CCAATGTTTCTTTTCTGTAG+CGG | + | chr7.2:5517383-5517402 | None:intergenic | 35.0% |
| ! | CTTTTTACCGTCAATCACAA+AGG | - | chr7.2:5518482-5518501 | MS.gene07040:CDS | 35.0% |
| ! | GAATGTTTTTCCTTGGTGAA+TGG | - | chr7.2:5518886-5518905 | MS.gene07040:intron | 35.0% |
| ! | GTTGTATAGATTGGTTCAGA+AGG | - | chr7.2:5519876-5519895 | MS.gene07040:CDS | 35.0% |
| ! | TCTGATAGTTCTTCTAGAGA+AGG | - | chr7.2:5517898-5517917 | MS.gene07040:CDS | 35.0% |
| !! | TTGTAGCTTTATCTGGCTTA+TGG | + | chr7.2:5519777-5519796 | None:intergenic | 35.0% |
| ACACTTTCTGTTTCGTTGAG+AGG | + | chr7.2:5519184-5519203 | None:intergenic | 40.0% | |
| ACGATTTAATCGACCAATGC+CGG | - | chr7.2:5520188-5520207 | MS.gene07040:CDS | 40.0% | |
| ACTTTCTGTTTCGTTGAGAG+GGG | + | chr7.2:5519182-5519201 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGAACCAG+AGG | + | chr7.2:5517881-5517900 | None:intergenic | 40.0% | |
| AGCTCTTTCCAATTCAGAAC+GGG | + | chr7.2:5519734-5519753 | None:intergenic | 40.0% | |
| CACTTTCTGTTTCGTTGAGA+GGG | + | chr7.2:5519183-5519202 | None:intergenic | 40.0% | |
| CCGCTACAGAAAAGAAACAT+TGG | - | chr7.2:5517380-5517399 | MS.gene07040:CDS | 40.0% | |
| CGAGAAGATTCAAAGCTGAA+AGG | + | chr7.2:5517714-5517733 | None:intergenic | 40.0% | |
| CTACAACCAAGAATTTCCCT+AGG | + | chr7.2:5518521-5518540 | None:intergenic | 40.0% | |
| CTAGGGAAATTCTTGGTTGT+AGG | - | chr7.2:5518519-5518538 | MS.gene07040:CDS | 40.0% | |
| CTATAGCTAGTGAGGCTAAA+TGG | - | chr7.2:5518327-5518346 | MS.gene07040:CDS | 40.0% | |
| CTATTAACTATCCCATTGGC+TGG | - | chr7.2:5519118-5519137 | MS.gene07040:intron | 40.0% | |
| CTCAATGCTTCATACTTCAC+CGG | + | chr7.2:5520210-5520229 | None:intergenic | 40.0% | |
| CTTAAGAAGAAGGTTATGGC+AGG | - | chr7.2:5517988-5518007 | MS.gene07040:CDS | 40.0% | |
| GAGCTCTTTCCAATTCAGAA+CGG | + | chr7.2:5519735-5519754 | None:intergenic | 40.0% | |
| GCCAATGGGATAGTTAATAG+AGG | + | chr7.2:5519118-5519137 | None:intergenic | 40.0% | |
| GCTTCTTTCATCTGATTCAC+CGG | - | chr7.2:5517927-5517946 | MS.gene07040:CDS | 40.0% | |
| GTAAGATACAGAGAGATTCC+AGG | - | chr7.2:5519598-5519617 | MS.gene07040:CDS | 40.0% | |
| TCATCCCTTATTACCTCTTC+TGG | + | chr7.2:5518697-5518716 | None:intergenic | 40.0% | |
| TCATTCGCCATTCTCAAACT+TGG | + | chr7.2:5517850-5517869 | None:intergenic | 40.0% | |
| TGATTGTGTGTGCAGATACT+TGG | - | chr7.2:5518967-5518986 | MS.gene07040:intron | 40.0% | |
| TGTGAGACTCTATGATACCA+TGG | + | chr7.2:5518563-5518582 | None:intergenic | 40.0% | |
| TTACGTGATCGTAAACTTCC+CGG | - | chr7.2:5519553-5519572 | MS.gene07040:CDS | 40.0% | |
| TTCGGCAAAGATCAGTATCA+TGG | + | chr7.2:5518785-5518804 | None:intergenic | 40.0% | |
| TTTAAACACCGCAGGATTCA+CGG | + | chr7.2:5520118-5520137 | None:intergenic | 40.0% | |
| ! | GAATCGGAAGACAGCATTTT+CGG | - | chr7.2:5517530-5517549 | MS.gene07040:CDS | 40.0% |
| ! | GTTAAGGCACAAAGTTTTCC+TGG | + | chr7.2:5519619-5519638 | None:intergenic | 40.0% |
| ! | TGTGTGCAGATACTTGGTTT+TGG | - | chr7.2:5518973-5518992 | MS.gene07040:intron | 40.0% |
| ! | TTAAAGCTCTGATCTCGAAC+CGG | + | chr7.2:5517949-5517968 | None:intergenic | 40.0% |
| !! | GTGTGCAGATACTTGGTTTT+GGG | - | chr7.2:5518974-5518993 | MS.gene07040:intron | 40.0% |
| AACACACCTTTAAACACCGC+AGG | + | chr7.2:5520126-5520145 | None:intergenic | 45.0% | |
| AAGCTCTTGAGCTTAGAGCT+AGG | - | chr7.2:5517767-5517786 | MS.gene07040:CDS | 45.0% | |
| AGGAAGCTGCTGAGAAACAA+AGG | - | chr7.2:5519932-5519951 | MS.gene07040:intron | 45.0% | |
| AGTGGCCAGAAGAGGTAATA+AGG | - | chr7.2:5518689-5518708 | MS.gene07040:intron | 45.0% | |
| ATTCTTGAAGTGGCCAGAAG+AGG | - | chr7.2:5518681-5518700 | MS.gene07040:intron | 45.0% | |
| CAAGTGCTTGAATGCAGGTT+GGG | + | chr7.2:5519444-5519463 | None:intergenic | 45.0% | |
| CATCCTCCATCAGTCCTAAA+TGG | + | chr7.2:5519012-5519031 | None:intergenic | 45.0% | |
| GAAGAAGAAGAACCAGAGGA+AGG | + | chr7.2:5517877-5517896 | None:intergenic | 45.0% | |
| GCAATGGTTCTTCTCCAAAC+AGG | - | chr7.2:5519031-5519050 | MS.gene07040:intron | 45.0% | |
| GGAAATTCTTGGTTGTAGGG+TGG | - | chr7.2:5518523-5518542 | MS.gene07040:CDS | 45.0% | |
| GTGAATCCTGCGGTGTTTAA+AGG | - | chr7.2:5520117-5520136 | MS.gene07040:intron | 45.0% | |
| GTGGCCAGAAGAGGTAATAA+GGG | - | chr7.2:5518690-5518709 | MS.gene07040:intron | 45.0% | |
| GTTGTGAGAAAGAAGGGCAA+TGG | - | chr7.2:5518022-5518041 | MS.gene07040:CDS | 45.0% | |
| TCAAGAGCTTGATCCAAACG+CGG | + | chr7.2:5517757-5517776 | None:intergenic | 45.0% | |
| TCAAGTGCTTGAATGCAGGT+TGG | + | chr7.2:5519445-5519464 | None:intergenic | 45.0% | |
| TGGACAATGTTTGAGGACCA+TGG | - | chr7.2:5518543-5518562 | MS.gene07040:CDS | 45.0% | |
| TGTAGGGTGGACAATGTTTG+AGG | - | chr7.2:5518536-5518555 | MS.gene07040:CDS | 45.0% | |
| TTAGCCTCACTAGCTATAGC+TGG | + | chr7.2:5518326-5518345 | None:intergenic | 45.0% | |
| TTCTTGTACCGTGAATCCTG+CGG | - | chr7.2:5520107-5520126 | MS.gene07040:intron | 45.0% | |
| TTGATCCAAACGCGGTGATA+TGG | + | chr7.2:5517749-5517768 | None:intergenic | 45.0% | |
| TTGGGTCTAGTGAAAGAGTG+CGG | + | chr7.2:5519426-5519445 | None:intergenic | 45.0% | |
| TTTAGCCATATCACCGCGTT+TGG | - | chr7.2:5517741-5517760 | MS.gene07040:CDS | 45.0% | |
| ! | ATGCTGCCATTTAGGACTGA+TGG | - | chr7.2:5519003-5519022 | MS.gene07040:intron | 45.0% |
| ! | ATGCTGTCTTCCGATTCGAT+CGG | + | chr7.2:5517527-5517546 | None:intergenic | 45.0% |
| ! | CATTGATTGGAGTTCGACGT+GGG | - | chr7.2:5519704-5519723 | MS.gene07040:CDS | 45.0% |
| ! | GGTTTCAAGTGCTTGAATGC+AGG | + | chr7.2:5519449-5519468 | None:intergenic | 45.0% |
| ! | TGTGTTTTGCCGTGATCTTG+CGG | - | chr7.2:5520140-5520159 | MS.gene07040:intron | 45.0% |
| ACATTGTGGCGTTTCCATGC+TGG | + | chr7.2:5519580-5519599 | None:intergenic | 50.0% | |
| AGGACTGATGGAGGATGCAA+TGG | - | chr7.2:5519015-5519034 | MS.gene07040:intron | 50.0% | |
| AGTGCGGTTACAATCAGCGA+TGG | + | chr7.2:5519410-5519429 | None:intergenic | 50.0% | |
| CATGCCAGCTATAGCTAGTG+AGG | - | chr7.2:5518319-5518338 | MS.gene07040:CDS | 50.0% | |
| CTGCAATTCGACCAGCAGAA+CGG | + | chr7.2:5519384-5519403 | None:intergenic | 50.0% | |
| GAATTGCTAGCGCAGCATTC+CGG | - | chr7.2:5519059-5519078 | MS.gene07040:intron | 50.0% | |
| GCGAATGAAGATCCTTCCTC+TGG | - | chr7.2:5517862-5517881 | MS.gene07040:CDS | 50.0% | |
| GCTTCATACTTCACCGGCAT+TGG | + | chr7.2:5520204-5520223 | None:intergenic | 50.0% | |
| GGAATTTGATGTGGCTGAGG+AGG | + | chr7.2:5519213-5519232 | None:intergenic | 50.0% | |
| GGAGGAATTTGATGTGGCTG+AGG | + | chr7.2:5519216-5519235 | None:intergenic | 50.0% | |
| GTGAGAAAGAAGGGCAATGG+AGG | - | chr7.2:5518025-5518044 | MS.gene07040:CDS | 50.0% | |
| GTTCCTTGCTCCGATCGAAT+CGG | - | chr7.2:5517514-5517533 | MS.gene07040:CDS | 50.0% | |
| TGCTCTGTGCATGTAGCACT+CGG | + | chr7.2:5519353-5519372 | None:intergenic | 50.0% | |
| TGCTTCGAAGAGTGAAGCTC+TGG | + | chr7.2:5519470-5519489 | None:intergenic | 50.0% | |
| TTCCTACCACCGCAAGATCA+CGG | + | chr7.2:5520152-5520171 | None:intergenic | 50.0% | |
| ! | CTGCCATTTAGGACTGATGG+AGG | - | chr7.2:5519006-5519025 | MS.gene07040:intron | 50.0% |
| ! | GGTGAAGCATGCTGCCATTT+AGG | - | chr7.2:5518995-5519014 | MS.gene07040:intron | 50.0% |
| ! | TGGGTGTTCCCGTTCTGAAT+TGG | - | chr7.2:5519723-5519742 | MS.gene07040:CDS | 50.0% |
| ! | TTGGTGGCTCACAAACCGTA+AGG | - | chr7.2:5517399-5517418 | MS.gene07040:CDS | 50.0% |
| !! | GCATTGATTGGAGTTCGACG+TGG | - | chr7.2:5519703-5519722 | MS.gene07040:CDS | 50.0% |
| !! | GTGTGGTGGGTTGTTGGTTT+GGG | + | chr7.2:5519150-5519169 | None:intergenic | 50.0% |
| !! | TGTGGTGGGTTGTTGGTTTG+GGG | + | chr7.2:5519149-5519168 | None:intergenic | 50.0% |
| ACCAGCAGACACTCTCTCTC+CGG | + | chr7.2:5519081-5519100 | None:intergenic | 55.0% | |
| GGCGGAGGAGGAATTTGATG+TGG | + | chr7.2:5519222-5519241 | None:intergenic | 55.0% | |
| GTAAACTTCCCGGTCCAGCA+TGG | - | chr7.2:5519563-5519582 | MS.gene07040:CDS | 55.0% | |
| ! | CTTCCGATTCGATCGGAGCA+AGG | + | chr7.2:5517520-5517539 | None:intergenic | 55.0% |
| ! | GTTTTGCCGTGATCTTGCGG+TGG | - | chr7.2:5520143-5520162 | MS.gene07040:intron | 55.0% |
| ! | TGAGTAGAGACCAGCGTCGA+GGG | + | chr7.2:5519266-5519285 | None:intergenic | 55.0% |
| ! | TTGGGGTGTCTCCAGCCAAT+GGG | + | chr7.2:5519132-5519151 | None:intergenic | 55.0% |
| ! | TTTGGGGTGTCTCCAGCCAA+TGG | + | chr7.2:5519133-5519152 | None:intergenic | 55.0% |
| !! | GGTAGGAAGCTTGTTGACGC+AGG | - | chr7.2:5520164-5520183 | MS.gene07040:intron | 55.0% |
| !! | GGTGTGGTGGGTTGTTGGTT+TGG | + | chr7.2:5519151-5519170 | None:intergenic | 55.0% |
| CTGAGTAGAGACCAGCGTCG+AGG | + | chr7.2:5519267-5519286 | None:intergenic | 60.0% | |
| GCATCTGCACACCGTTCTGC+TGG | - | chr7.2:5519370-5519389 | MS.gene07040:intron | 60.0% | |
| GTGGCGTTTCCATGCTGGAC+CGG | + | chr7.2:5519575-5519594 | None:intergenic | 60.0% | |
| GTTTCGTTGAGAGGGGCTCG+TGG | + | chr7.2:5519175-5519194 | None:intergenic | 60.0% | |
| TGCCGTGATCTTGCGGTGGT+AGG | - | chr7.2:5520147-5520166 | MS.gene07040:intron | 60.0% | |
| TGGCGTTTCCATGCTGGACC+GGG | + | chr7.2:5519574-5519593 | None:intergenic | 60.0% | |
| TGTGCATGTAGCACTCGGCG+AGG | + | chr7.2:5519348-5519367 | None:intergenic | 60.0% | |
| ! | ACTCGGCGAGGAAGCCTTGT+GGG | + | chr7.2:5519336-5519355 | None:intergenic | 60.0% |
| !! | TCCGGAGAGAGAGTGTCTGC+TGG | - | chr7.2:5519077-5519096 | MS.gene07040:intron | 60.0% |
| CACTCGGCGAGGAAGCCTTG+TGG | + | chr7.2:5519337-5519356 | None:intergenic | 65.0% | |
| CAGCGAGTGCAGCTGCACGA+CGG | + | chr7.2:5519243-5519262 | None:intergenic | 65.0% | |
| TCGTTGAGAGGGGCTCGTGG+CGG | + | chr7.2:5519172-5519191 | None:intergenic | 65.0% | |
| ! | CTCGGCGAGGAAGCCTTGTG+GGG | + | chr7.2:5519335-5519354 | None:intergenic | 65.0% |
| ! | GGAAGCCTTGTGGGGCAGCA+CGG | + | chr7.2:5519327-5519346 | None:intergenic | 65.0% |
| !! | GTGGCGGTGTGGTGGGTTGT+TGG | + | chr7.2:5519156-5519175 | None:intergenic | 65.0% |
| CGAGTGCAGCTGCACGACGG+CGG | + | chr7.2:5519240-5519259 | None:intergenic | 70.0% | |
| AGGGGCTCGTGGCGGTGTGG+TGG | + | chr7.2:5519164-5519183 | None:intergenic | 75.0% | |
| CAGCTGCACGACGGCGGAGG+AGG | + | chr7.2:5519234-5519253 | None:intergenic | 75.0% | |
| GAGAGGGGCTCGTGGCGGTG+TGG | + | chr7.2:5519167-5519186 | None:intergenic | 75.0% | |
| GCACTCGCTGCCCTCGACGC+TGG | - | chr7.2:5519253-5519272 | MS.gene07040:intron | 75.0% | |
| GGGGCTCGTGGCGGTGTGGT+GGG | + | chr7.2:5519163-5519182 | None:intergenic | 75.0% | |
| GGTCGCCGTGCTGCCCCACA+AGG | - | chr7.2:5519319-5519338 | MS.gene07040:intron | 75.0% | |
| GTGCAGCTGCACGACGGCGG+AGG | + | chr7.2:5519237-5519256 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 5517355 | 5520236 | 5517355 | ID=MS.gene07040 |
| chr7.2 | mRNA | 5517355 | 5520236 | 5517355 | ID=MS.gene07040.t1;Parent=MS.gene07040 |
| chr7.2 | exon | 5520171 | 5520236 | 5520171 | ID=MS.gene07040.t1.exon1;Parent=MS.gene07040.t1 |
| chr7.2 | CDS | 5520171 | 5520236 | 5520171 | ID=cds.MS.gene07040.t1;Parent=MS.gene07040.t1 |
| chr7.2 | exon | 5519545 | 5519942 | 5519545 | ID=MS.gene07040.t1.exon2;Parent=MS.gene07040.t1 |
| chr7.2 | CDS | 5519545 | 5519942 | 5519545 | ID=cds.MS.gene07040.t1;Parent=MS.gene07040.t1 |
| chr7.2 | exon | 5517355 | 5518609 | 5517355 | ID=MS.gene07040.t1.exon3;Parent=MS.gene07040.t1 |
| chr7.2 | CDS | 5517355 | 5518609 | 5517355 | ID=cds.MS.gene07040.t1;Parent=MS.gene07040.t1 |
| Gene Sequence |
| Protein sequence |
