Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070415.t1 | OIT06906.1 | 95.2 | 104 | 5 | 0 | 1 | 104 | 15 | 118 | 3.70E-49 | 204.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070415.t1 | Q07760 | 96.0 | 99 | 4 | 0 | 1 | 99 | 1 | 99 | 2.4e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070415.t1 | A0A1J6IQE4 | 95.2 | 104 | 5 | 0 | 1 | 104 | 15 | 118 | 2.7e-49 | 204.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05380 | MS.gene070415 | 0.808037 | 3.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070415.t1 | MTR_7g098290 | 100.000 | 99 | 0 | 0 | 1 | 99 | 1 | 99 | 2.14e-67 | 204 |
| MS.gene070415.t1 | MTR_1g069585 | 100.000 | 99 | 0 | 0 | 1 | 99 | 1 | 99 | 2.14e-67 | 204 |
| MS.gene070415.t1 | MTR_7g098290 | 100.000 | 84 | 0 | 0 | 16 | 99 | 1 | 84 | 5.29e-56 | 174 |
| MS.gene070415.t1 | MTR_1g026090 | 74.490 | 98 | 10 | 1 | 2 | 99 | 42 | 124 | 1.82e-40 | 137 |
| MS.gene070415.t1 | MTR_2g010350 | 54.867 | 113 | 36 | 2 | 99 | 211 | 57 | 154 | 4.39e-28 | 110 |
| MS.gene070415.t1 | MTR_2g010370 | 74.627 | 67 | 13 | 1 | 145 | 211 | 105 | 167 | 1.41e-25 | 103 |
| MS.gene070415.t1 | MTR_4g092770 | 50.877 | 114 | 49 | 3 | 99 | 211 | 92 | 199 | 3.22e-24 | 100 |
| MS.gene070415.t1 | MTR_5g464620 | 87.755 | 49 | 6 | 0 | 14 | 62 | 16 | 64 | 3.91e-24 | 91.3 |
| MS.gene070415.t1 | MTR_5g054560 | 57.143 | 84 | 12 | 1 | 16 | 99 | 1 | 60 | 6.21e-23 | 89.4 |
| MS.gene070415.t1 | MTR_5g030580 | 49.495 | 99 | 45 | 1 | 118 | 211 | 71 | 169 | 4.48e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070415.t1 | AT3G04400 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 9.84e-66 | 199 |
| MS.gene070415.t1 | AT2G33370 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 9.84e-66 | 199 |
| MS.gene070415.t1 | AT1G04480 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 9.84e-66 | 199 |
| MS.gene070415.t1 | AT3G04400 | 98.810 | 84 | 1 | 0 | 16 | 99 | 1 | 84 | 3.28e-55 | 172 |
| MS.gene070415.t1 | AT2G33370 | 98.810 | 84 | 1 | 0 | 16 | 99 | 1 | 84 | 3.28e-55 | 172 |
| MS.gene070415.t1 | AT2G22730 | 45.045 | 111 | 48 | 2 | 111 | 211 | 89 | 196 | 1.45e-21 | 91.7 |
| MS.gene070415.t1 | AT5G64500 | 45.133 | 113 | 47 | 2 | 99 | 211 | 91 | 188 | 1.64e-21 | 92.0 |
| MS.gene070415.t1 | AT2G22730 | 45.045 | 111 | 48 | 2 | 111 | 211 | 89 | 196 | 6.71e-21 | 90.5 |
| MS.gene070415.t1 | AT2G22730 | 46.847 | 111 | 46 | 3 | 111 | 211 | 89 | 196 | 7.13e-21 | 90.5 |
| MS.gene070415.t1 | AT2G22730 | 43.103 | 116 | 48 | 2 | 111 | 211 | 89 | 201 | 2.69e-20 | 89.0 |
| MS.gene070415.t1 | AT2G22730 | 43.103 | 116 | 48 | 2 | 111 | 211 | 89 | 201 | 4.21e-20 | 88.2 |
| MS.gene070415.t1 | AT2G22730 | 43.103 | 116 | 48 | 2 | 111 | 211 | 89 | 201 | 4.36e-20 | 88.2 |
| MS.gene070415.t1 | AT2G22730 | 59.701 | 67 | 27 | 0 | 145 | 211 | 24 | 90 | 9.30e-19 | 84.0 |
| MS.gene070415.t1 | AT5G65687 | 56.716 | 67 | 29 | 0 | 145 | 211 | 113 | 179 | 1.14e-17 | 81.3 |
Find 66 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTACCAGTCTGGCGTAAC+TGG | 0.215563 | 3.3:-26256053 | None:intergenic |
| CATTTGATTCTAGCCATAAA+AGG | 0.277908 | 3.3:+26254735 | MS.gene070415:intron |
| TGACAACGCCCCGGCTTCTC+TGG | 0.354103 | 3.3:+26255626 | MS.gene070415:CDS |
| TACCTGACACGCTAAATATA+TGG | 0.358041 | 3.3:-26254381 | None:intergenic |
| TAAATATATGGTTGTGGGCT+TGG | 0.360482 | 3.3:-26254369 | None:intergenic |
| GGGGTACAGAGAGGGAGTTT+AGG | 0.407563 | 3.3:-26256032 | None:intergenic |
| CCTACCCTTGATTCCCTTCA+CGG | 0.419579 | 3.3:-26252718 | None:intergenic |
| AAAACCTTCTTCCTGAGATC+AGG | 0.427356 | 3.3:-26252804 | None:intergenic |
| AACCATATATTTAGCGTGTC+AGG | 0.430038 | 3.3:+26254379 | MS.gene070415:CDS |
| CGTCTTCCTTCAGCTTGTGC+TGG | 0.450748 | 3.3:+26252747 | MS.gene070415:CDS |
| ACATGAAGACACCATCCTTT+CGG | 0.450937 | 3.3:-26252863 | None:intergenic |
| GAATCCATATGAAAAGGTAT+AGG | 0.451769 | 3.3:-26254332 | None:intergenic |
| TCATTATTGTATAGGCTGGT+TGG | 0.454267 | 3.3:+26255558 | MS.gene070415:intron |
| AAGAAACAAACCAGAGAAGC+CGG | 0.460719 | 3.3:-26255636 | None:intergenic |
| GGTGTCTTCATGTACTTTGA+AGG | 0.469127 | 3.3:+26252873 | MS.gene070415:CDS |
| TTAGGTCGTGGTGGTTCCGC+GGG | 0.471837 | 3.3:+26252606 | MS.gene070415:intron |
| CACGCTAAATATATGGTTGT+GGG | 0.484796 | 3.3:-26254374 | None:intergenic |
| TTCAGCTTGTGCTGGTGACA+TGG | 0.489849 | 3.3:+26252755 | MS.gene070415:CDS |
| CATCTCCGTGAAGGGAATCA+AGG | 0.491257 | 3.3:+26252713 | MS.gene070415:CDS |
| ACACGCTAAATATATGGTTG+TGG | 0.499475 | 3.3:-26254375 | None:intergenic |
| TTACACGCGACAGACAGAAA+TGG | 0.501616 | 3.3:-26255424 | None:intergenic |
| AGAAACAAACCAGAGAAGCC+GGG | 0.501831 | 3.3:-26255635 | None:intergenic |
| CAGTTCACCGTCGCTGCCAC+TGG | 0.502403 | 3.3:-26252657 | None:intergenic |
| ATTACCAGTCTGGCGTAACT+GGG | 0.506988 | 3.3:-26256052 | None:intergenic |
| CGCTGACGAACAATGACAGC+TGG | 0.509289 | 3.3:-26252828 | None:intergenic |
| TGCCAAGAATCCATATGAAA+AGG | 0.509360 | 3.3:-26254338 | None:intergenic |
| AGAAGGGAAAGCCTGATCTC+AGG | 0.525390 | 3.3:+26252793 | MS.gene070415:CDS |
| GAGAGGGAGTTTAGGAAGCA+AGG | 0.526397 | 3.3:-26256024 | None:intergenic |
| TTGTGCTGGTGACATGGTGA+TGG | 0.531038 | 3.3:+26252761 | MS.gene070415:CDS |
| AAGCCATGGCGCCGAAAGGA+TGG | 0.535866 | 3.3:+26252852 | MS.gene070415:CDS |
| ACTCTTGCAACTTTCTATTG+TGG | 0.539645 | 3.3:+26255381 | MS.gene070415:CDS |
| TGTGATGAAAGCATGCTGAT+AGG | 0.544145 | 3.3:-26254780 | None:intergenic |
| ACACCATCCTTTCGGCGCCA+TGG | 0.548243 | 3.3:-26252855 | None:intergenic |
| GGTGATGGCTACTGTGAAGA+AGG | 0.561037 | 3.3:+26252776 | MS.gene070415:CDS |
| TTGTATAGGCTGGTTGGTGT+TGG | 0.563558 | 3.3:+26255564 | MS.gene070415:intron |
| GTACCCCAGTTACGCCAGAC+TGG | 0.566995 | 3.3:+26256048 | MS.gene070415:CDS |
| ATTAGGTCGTGGTGGTTCCG+CGG | 0.570592 | 3.3:+26252605 | MS.gene070415:intron |
| AAAGCCTGATCTCAGGAAGA+AGG | 0.579578 | 3.3:+26252800 | MS.gene070415:CDS |
| CTGTACATCATCTCCGTGAA+GGG | 0.589573 | 3.3:+26252705 | MS.gene070415:CDS |
| GATGTACAGATTCTTTGCTC+CGG | 0.589715 | 3.3:-26252691 | None:intergenic |
| ATCTCCGTGAAGGGAATCAA+GGG | 0.592804 | 3.3:+26252714 | MS.gene070415:CDS |
| AACAAGTTCCGTATGTCACT+AGG | 0.593234 | 3.3:+26252630 | MS.gene070415:CDS |
| TCTGTACATCATCTCCGTGA+AGG | 0.600106 | 3.3:+26252704 | MS.gene070415:CDS |
| TTGTTCGTCAGCGTAAGCCA+TGG | 0.601755 | 3.3:+26252838 | MS.gene070415:CDS |
| CTGGTAGACCTAGTGACATA+CGG | 0.602439 | 3.3:-26252638 | None:intergenic |
| TAGGAGTTGGATTGTCAATG+TGG | 0.604600 | 3.3:+26255358 | MS.gene070415:intron |
| GAAACAAACCAGAGAAGCCG+GGG | 0.606993 | 3.3:-26255634 | None:intergenic |
| GCGTAAGCCATGGCGCCGAA+AGG | 0.608624 | 3.3:+26252848 | MS.gene070415:CDS |
| AGGTCTACCAGTGGCAGCGA+CGG | 0.613501 | 3.3:+26252650 | MS.gene070415:CDS |
| ATGTCACCAGCACAAGCTGA+AGG | 0.618315 | 3.3:-26252753 | None:intergenic |
| TTTCATTGATGACAACGCCC+CGG | 0.619859 | 3.3:+26255617 | MS.gene070415:CDS |
| GCGTAACTGGGGTACAGAGA+GGG | 0.621304 | 3.3:-26256040 | None:intergenic |
| GGGGCGTTGTCATCAATGAA+AGG | 0.623990 | 3.3:-26255615 | None:intergenic |
| AACGCAACCATGTCGAAGAG+AGG | 0.636545 | 3.3:+26252505 | None:intergenic |
| GCGTTGTCATCAATGAAAGG+TGG | 0.641777 | 3.3:-26255612 | None:intergenic |
| GGCGTAACTGGGGTACAGAG+AGG | 0.647592 | 3.3:-26256041 | None:intergenic |
| AGCATGCTTTCATCACATGT+AGG | 0.649210 | 3.3:+26254786 | MS.gene070415:CDS |
| CCGTGAAGGGAATCAAGGGT+AGG | 0.651559 | 3.3:+26252718 | MS.gene070415:CDS |
| TAGGCTGGTTGGTGTTGGCG+AGG | 0.660350 | 3.3:+26255569 | MS.gene070415:intron |
| GTGATGGCTACTGTGAAGAA+GGG | 0.669945 | 3.3:+26252777 | MS.gene070415:CDS |
| GTACATACCTCTCTTCGACA+TGG | 0.681454 | 3.3:-26252512 | None:intergenic |
| TTACCAGTCTGGCGTAACTG+GGG | 0.688905 | 3.3:-26256051 | None:intergenic |
| GTGAACTGTGCTGATAACAC+CGG | 0.699857 | 3.3:+26252672 | MS.gene070415:CDS |
| TAGGTCGTGGTGGTTCCGCG+GGG | 0.708397 | 3.3:+26252607 | MS.gene070415:intron |
| TATGTCACTAGGTCTACCAG+TGG | 0.720993 | 3.3:+26252641 | MS.gene070415:CDS |
| CATACGGAACTTGTTCCCCG+CGG | 0.790506 | 3.3:-26252622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGTTTTACATAATTT+AGG | + | chr3.3:26255841-26255860 | MS.gene070415:intron | 10.0% |
| !!! | TATTTGTTTTACATAATTTA+GGG | + | chr3.3:26255842-26255861 | MS.gene070415:intron | 10.0% |
| !! | AAAATAAAATGTGTGAATAT+AGG | + | chr3.3:26254146-26254165 | MS.gene070415:intron | 15.0% |
| !! | AAATAAAATGTGTGAATATA+GGG | + | chr3.3:26254147-26254166 | MS.gene070415:intron | 15.0% |
| !! | AAGAAAATAAAAAAGAAGAT+AGG | - | chr3.3:26254017-26254036 | None:intergenic | 15.0% |
| !! | AATTTAAAGGAAATACTTTA+GGG | - | chr3.3:26255811-26255830 | None:intergenic | 15.0% |
| !! | ATTATCTAAAGAAATTTACA+AGG | - | chr3.3:26255664-26255683 | None:intergenic | 15.0% |
| !! | TATAAGCTTAATATATGATT+AGG | + | chr3.3:26253566-26253585 | MS.gene070415:intron | 15.0% |
| !! | TATATGTACAAAGAATTTAA+AGG | - | chr3.3:26255824-26255843 | None:intergenic | 15.0% |
| !! | TTATCTAAAGAAATTTACAA+GGG | - | chr3.3:26255663-26255682 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTACATAATTTAG+GGG | + | chr3.3:26255843-26255862 | MS.gene070415:intron | 15.0% |
| !!! | ATTTTAGAAACATGTTAAAA+TGG | - | chr3.3:26253310-26253329 | None:intergenic | 15.0% |
| !!! | TGTGTTACATTATATTTTTT+GGG | + | chr3.3:26254611-26254630 | MS.gene070415:intron | 15.0% |
| !!! | TTAATTTTAATGTAATCGAT+AGG | + | chr3.3:26255199-26255218 | MS.gene070415:intron | 15.0% |
| !!! | TTGTGTTACATTATATTTTT+TGG | + | chr3.3:26254610-26254629 | MS.gene070415:intron | 15.0% |
| !! | AAATATATGAATTGTGAGAA+AGG | - | chr3.3:26255313-26255332 | None:intergenic | 20.0% |
| !! | AATATATTGATCAATAAGAG+AGG | + | chr3.3:26253700-26253719 | MS.gene070415:intron | 20.0% |
| !! | AGTGATAATTTGAATTTCTT+TGG | + | chr3.3:26255239-26255258 | MS.gene070415:intron | 20.0% |
| !! | ATTTAAGGAAAAAAAAGATG+AGG | + | chr3.3:26255135-26255154 | MS.gene070415:intron | 20.0% |
| !! | CATTCAAATAATAATCCTTT+AGG | + | chr3.3:26254996-26255015 | MS.gene070415:intron | 20.0% |
| !! | GAATTTAAAGGAAATACTTT+AGG | - | chr3.3:26255812-26255831 | None:intergenic | 20.0% |
| !! | GAGTTTAACATATTACAAAA+TGG | + | chr3.3:26253401-26253420 | MS.gene070415:intron | 20.0% |
| !! | TATAGTATCTAAATATATGC+AGG | + | chr3.3:26255104-26255123 | MS.gene070415:intron | 20.0% |
| !! | TATGTGCACAAATAATTTAT+AGG | - | chr3.3:26253548-26253567 | None:intergenic | 20.0% |
| !! | TCATATATTAGCAACATAAA+AGG | - | chr3.3:26253493-26253512 | None:intergenic | 20.0% |
| !! | TCTAACTTTATCAAAATAAC+TGG | + | chr3.3:26253780-26253799 | MS.gene070415:intron | 20.0% |
| !! | TTGACCAATAATTATGTAAA+TGG | - | chr3.3:26254411-26254430 | None:intergenic | 20.0% |
| !!! | AATTTGTTTTGATAAGCAAT+TGG | + | chr3.3:26254045-26254064 | MS.gene070415:intron | 20.0% |
| !!! | ATTGCCATTTACATAATTAT+TGG | + | chr3.3:26254404-26254423 | MS.gene070415:intron | 20.0% |
| !!! | ATTTTTTTTCATACAGATCT+TGG | + | chr3.3:26256001-26256020 | MS.gene070415:intron | 20.0% |
| !!! | TATTTTGATAAAGTTAGACA+CGG | - | chr3.3:26253778-26253797 | None:intergenic | 20.0% |
| !!! | TGAAAAAGCTTTTTAAAACA+TGG | - | chr3.3:26254876-26254895 | None:intergenic | 20.0% |
| !!! | TTGGTTGTTTAGTATTATTT+TGG | + | chr3.3:26254712-26254731 | MS.gene070415:intron | 20.0% |
| !!! | TTTTACCTTCATTATTGTAT+AGG | + | chr3.3:26255550-26255569 | MS.gene070415:intron | 20.0% |
| !!! | TTTTATTTCTTGAAATTCCA+AGG | + | chr3.3:26254570-26254589 | MS.gene070415:intron | 20.0% |
| !!! | TTTTTCTTCAAACAGATATA+TGG | + | chr3.3:26254203-26254222 | MS.gene070415:intron | 20.0% |
| ! | AAAATACATCAAGCTACATT+AGG | - | chr3.3:26253522-26253541 | None:intergenic | 25.0% |
| ! | AAGAAAAACTACAAAATCAG+TGG | - | chr3.3:26254191-26254210 | None:intergenic | 25.0% |
| ! | AATACAATTGAATCTGAGAA+AGG | - | chr3.3:26252551-26252570 | None:intergenic | 25.0% |
| ! | ACTTATATTTCATTTGTGTG+AGG | + | chr3.3:26255870-26255889 | MS.gene070415:intron | 25.0% |
| ! | AGAAAAACTACAAAATCAGT+GGG | - | chr3.3:26254190-26254209 | None:intergenic | 25.0% |
| ! | CTTATATTTCATTTGTGTGA+GGG | + | chr3.3:26255871-26255890 | MS.gene070415:intron | 25.0% |
| ! | GATGAGAAATATTGATGTAT+AGG | + | chr3.3:26254829-26254848 | MS.gene070415:intron | 25.0% |
| ! | GTAAATCCATTTAGACTTAT+AGG | + | chr3.3:26255339-26255358 | MS.gene070415:intron | 25.0% |
| ! | TATATCAACTTGAAAAGCTA+GGG | - | chr3.3:26255088-26255107 | None:intergenic | 25.0% |
| ! | TATATTAGCAACATAAAAGG+TGG | - | chr3.3:26253490-26253509 | None:intergenic | 25.0% |
| ! | TCTAAATACATATCCTAAGT+TGG | + | chr3.3:26253735-26253754 | MS.gene070415:intron | 25.0% |
| ! | TGAAAAATCTAATCAAGCTT+AGG | + | chr3.3:26255690-26255709 | MS.gene070415:intron | 25.0% |
| ! | TTAAAATAGCCAATCATTCA+AGG | + | chr3.3:26253893-26253912 | MS.gene070415:intron | 25.0% |
| ! | TTAGAGTTATGAATGTACTA+AGG | + | chr3.3:26254443-26254462 | MS.gene070415:intron | 25.0% |
| !! | AAGACCATGAAACTTTTTAA+AGG | - | chr3.3:26254552-26254571 | None:intergenic | 25.0% |
| !! | CTCACAATTCATATATTTTG+CGG | + | chr3.3:26255315-26255334 | MS.gene070415:intron | 25.0% |
| !! | TTGTCCTTTAAAAAGTTTCA+TGG | + | chr3.3:26254545-26254564 | MS.gene070415:intron | 25.0% |
| !!! | ATTTTGATAAAGTTAGACAC+GGG | - | chr3.3:26253777-26253796 | None:intergenic | 25.0% |
| !!! | TCATAACTCTAAAACAGAAT+GGG | - | chr3.3:26254435-26254454 | None:intergenic | 25.0% |
| !!! | TTCATAACTCTAAAACAGAA+TGG | - | chr3.3:26254436-26254455 | None:intergenic | 25.0% |
| AAAAAAAGATGAGGATGATG+AGG | + | chr3.3:26255144-26255163 | MS.gene070415:intron | 30.0% | |
| AATTCCTGTGCAATTTATAG+TGG | + | chr3.3:26254677-26254696 | MS.gene070415:intron | 30.0% | |
| AATTGGAAGAGAGTAATTTG+AGG | + | chr3.3:26254062-26254081 | MS.gene070415:intron | 30.0% | |
| ACACATGTAATCATTGTCAT+AGG | - | chr3.3:26253283-26253302 | None:intergenic | 30.0% | |
| ATATTGATCAATAAGAGAGG+TGG | + | chr3.3:26253703-26253722 | MS.gene070415:intron | 30.0% | |
| ATTTGCATAATCAGTTTGAG+TGG | + | chr3.3:26254469-26254488 | MS.gene070415:intron | 30.0% | |
| CAGTACCAAACTGAAAAAAA+TGG | - | chr3.3:26253643-26253662 | None:intergenic | 30.0% | |
| CATTTGATTCTAGCCATAAA+AGG | + | chr3.3:26254735-26254754 | MS.gene070415:intron | 30.0% | |
| CCAATGGAATACTTGAAAAT+AGG | + | chr3.3:26254926-26254945 | MS.gene070415:intron | 30.0% | |
| CCATCATAAAAAATGCCTAA+AGG | - | chr3.3:26255014-26255033 | None:intergenic | 30.0% | |
| CTATAAATTGCACAGGAATT+TGG | - | chr3.3:26254677-26254696 | None:intergenic | 30.0% | |
| CTATATCAACTTGAAAAGCT+AGG | - | chr3.3:26255089-26255108 | None:intergenic | 30.0% | |
| TAGAATGAATTCATGTCAGA+AGG | + | chr3.3:26253599-26253618 | MS.gene070415:intron | 30.0% | |
| TGAGAAAGATAGAAAAACCT+TGG | - | chr3.3:26254590-26254609 | None:intergenic | 30.0% | |
| ! | ACTCATAATTGCTCCTTTTA+TGG | - | chr3.3:26254751-26254770 | None:intergenic | 30.0% |
| ! | AGGAATTTGGATAAAGTGTT+CGG | - | chr3.3:26254664-26254683 | None:intergenic | 30.0% |
| ! | ATGGAGTACTATAAATCATC+TGG | + | chr3.3:26253420-26253439 | MS.gene070415:intron | 30.0% |
| ! | GAATCCATATGAAAAGGTAT+AGG | - | chr3.3:26254335-26254354 | None:intergenic | 30.0% |
| ! | TACCTTTTCATATGGATTCT+TGG | + | chr3.3:26254336-26254355 | MS.gene070415:CDS | 30.0% |
| ! | TGTATCCCTATTTTCTGATT+AGG | + | chr3.3:26252588-26252607 | MS.gene070415:intron | 30.0% |
| ! | TGTCTTATGTTTTGCATTTC+TGG | + | chr3.3:26255977-26255996 | MS.gene070415:intron | 30.0% |
| ! | TTCTCCTATACCTTTTCATA+TGG | + | chr3.3:26254328-26254347 | MS.gene070415:CDS | 30.0% |
| ! | TTTTAATGTAATCGATAGGC+AGG | + | chr3.3:26255203-26255222 | MS.gene070415:intron | 30.0% |
| !! | ACTTTTTAAAGGACAACAGA+CGG | - | chr3.3:26254541-26254560 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTCATGGTAACA+AGG | + | chr3.3:26254105-26254124 | MS.gene070415:intron | 30.0% |
| !!! | CCTATTTTCAAGTATTCCAT+TGG | - | chr3.3:26254929-26254948 | None:intergenic | 30.0% |
| !!! | CCTTTAGGCATTTTTTATGA+TGG | + | chr3.3:26255011-26255030 | MS.gene070415:intron | 30.0% |
| !!! | CGATGATAAGAGTTTTTTCA+TGG | + | chr3.3:26254097-26254116 | MS.gene070415:intron | 30.0% |
| !!! | GAGTTTTTTCATGGTAACAA+GGG | + | chr3.3:26254106-26254125 | MS.gene070415:intron | 30.0% |
| !!! | TAGGCATTTTTTATGATGGT+AGG | + | chr3.3:26255015-26255034 | MS.gene070415:intron | 30.0% |
| AACCATATATTTAGCGTGTC+AGG | + | chr3.3:26254379-26254398 | MS.gene070415:CDS | 35.0% | |
| ACACGCTAAATATATGGTTG+TGG | - | chr3.3:26254378-26254397 | None:intergenic | 35.0% | |
| ACCAGCCTATACAATAATGA+AGG | - | chr3.3:26255558-26255577 | None:intergenic | 35.0% | |
| ACCTTCATTATTGTATAGGC+TGG | + | chr3.3:26255554-26255573 | MS.gene070415:intron | 35.0% | |
| ACTCTTGCAACTTTCTATTG+TGG | + | chr3.3:26255381-26255400 | MS.gene070415:CDS | 35.0% | |
| AGAATATGCCTGTAGAATGA+AGG | - | chr3.3:26254312-26254331 | None:intergenic | 35.0% | |
| ATAGTGGCTAATGATCATCT+TGG | + | chr3.3:26254693-26254712 | MS.gene070415:intron | 35.0% | |
| ATGCAGGCATCATACATTTA+AGG | + | chr3.3:26255120-26255139 | MS.gene070415:intron | 35.0% | |
| ATGTCACATACAGTAGATGT+AGG | + | chr3.3:26253239-26253258 | MS.gene070415:intron | 35.0% | |
| CAATAAGAGAGGTGGTTTAA+TGG | + | chr3.3:26253711-26253730 | MS.gene070415:intron | 35.0% | |
| CACGACCTAATCAGAAAATA+GGG | - | chr3.3:26252596-26252615 | None:intergenic | 35.0% | |
| CACGCTAAATATATGGTTGT+GGG | - | chr3.3:26254377-26254396 | None:intergenic | 35.0% | |
| CCAACTCCTATAAGTCTAAA+TGG | - | chr3.3:26255348-26255367 | None:intergenic | 35.0% | |
| CCATTTAGACTTATAGGAGT+TGG | + | chr3.3:26255345-26255364 | MS.gene070415:intron | 35.0% | |
| GTTTATATTGCTGCCAACTT+AGG | - | chr3.3:26253751-26253770 | None:intergenic | 35.0% | |
| TAAATATATGGTTGTGGGCT+TGG | - | chr3.3:26254372-26254391 | None:intergenic | 35.0% | |
| TACCACATTGCTAATCCATA+AGG | + | chr3.3:26253850-26253869 | MS.gene070415:intron | 35.0% | |
| TACCTGACACGCTAAATATA+TGG | - | chr3.3:26254384-26254403 | None:intergenic | 35.0% | |
| TCATTATTGTATAGGCTGGT+TGG | + | chr3.3:26255558-26255577 | MS.gene070415:intron | 35.0% | |
| TGCAAAAGATCACATTCAGA+TGG | - | chr3.3:26255940-26255959 | None:intergenic | 35.0% | |
| TGCCAAGAATCCATATGAAA+AGG | - | chr3.3:26254341-26254360 | None:intergenic | 35.0% | |
| TTAGCCACTATAAATTGCAC+AGG | - | chr3.3:26254684-26254703 | None:intergenic | 35.0% | |
| ! | ATTGACAGCCTTATGATATC+TGG | - | chr3.3:26253381-26253400 | None:intergenic | 35.0% |
| ! | CACATCATGTTGTTTAAGAC+TGG | - | chr3.3:26253019-26253038 | None:intergenic | 35.0% |
| ! | GTGGTTTTTCGTTCAATTTC+TGG | + | chr3.3:26255400-26255419 | MS.gene070415:CDS | 35.0% |
| ! | TGAGTGATTTGTGTTCTGAT+TGG | + | chr3.3:26252957-26252976 | MS.gene070415:intron | 35.0% |
| ! | TTCTGATTGGTCATTCACAA+TGG | + | chr3.3:26252970-26252989 | MS.gene070415:intron | 35.0% |
| ! | TTTGCTATCTTTCTGCATGT+GGG | + | chr3.3:26253340-26253359 | MS.gene070415:intron | 35.0% |
| !! | ATTTGCTATCTTTCTGCATG+TGG | + | chr3.3:26253339-26253358 | MS.gene070415:intron | 35.0% |
| !!! | CGCATCCATTTTTTTCAGTT+TGG | + | chr3.3:26253635-26253654 | MS.gene070415:intron | 35.0% |
| AAAACCTTCTTCCTGAGATC+AGG | - | chr3.3:26252807-26252826 | None:intergenic | 40.0% | |
| AACAACCTTAGAGCTCATAG+AGG | - | chr3.3:26253968-26253987 | None:intergenic | 40.0% | |
| AACAAGTTCCGTATGTCACT+AGG | + | chr3.3:26252630-26252649 | MS.gene070415:CDS | 40.0% | |
| AAGAAACAAACCAGAGAAGC+CGG | - | chr3.3:26255639-26255658 | None:intergenic | 40.0% | |
| ACATGAAGACACCATCCTTT+CGG | - | chr3.3:26252866-26252885 | None:intergenic | 40.0% | |
| AGCATGCTTTCATCACATGT+AGG | + | chr3.3:26254786-26254805 | MS.gene070415:CDS | 40.0% | |
| CAAGTCTGCCAGATATCATA+AGG | + | chr3.3:26253370-26253389 | MS.gene070415:intron | 40.0% | |
| CATAATCAGTTTGAGTGGTG+TGG | + | chr3.3:26254474-26254493 | MS.gene070415:intron | 40.0% | |
| CATGAACTCCTTCATTCTAC+AGG | + | chr3.3:26254301-26254320 | MS.gene070415:intron | 40.0% | |
| CCACGACCTAATCAGAAAAT+AGG | - | chr3.3:26252597-26252616 | None:intergenic | 40.0% | |
| GATGTACAGATTCTTTGCTC+CGG | - | chr3.3:26252694-26252713 | None:intergenic | 40.0% | |
| GCAGACTCACTATCTAACAA+AGG | - | chr3.3:26253995-26254014 | None:intergenic | 40.0% | |
| GGTAGTTGTAACAAGCCTTT+AGG | + | chr3.3:26255036-26255055 | MS.gene070415:intron | 40.0% | |
| GGTGTCTTCATGTACTTTGA+AGG | + | chr3.3:26252873-26252892 | MS.gene070415:CDS | 40.0% | |
| TAGGAGTTGGATTGTCAATG+TGG | + | chr3.3:26255358-26255377 | MS.gene070415:intron | 40.0% | |
| TCCTATGTCAGATAGCCTAA+AGG | - | chr3.3:26255054-26255073 | None:intergenic | 40.0% | |
| ! | ATTTTCTGATTAGGTCGTGG+TGG | + | chr3.3:26252597-26252616 | MS.gene070415:intron | 40.0% |
| ! | CCTATTTTCTGATTAGGTCG+TGG | + | chr3.3:26252594-26252613 | MS.gene070415:intron | 40.0% |
| ! | GACTGTTTTGCATTGCCTTA+TGG | - | chr3.3:26253868-26253887 | None:intergenic | 40.0% |
| ! | TGTGATGAAAGCATGCTGAT+AGG | - | chr3.3:26254783-26254802 | None:intergenic | 40.0% |
| !! | TGCCTTATGGATTAGCAATG+TGG | - | chr3.3:26253855-26253874 | None:intergenic | 40.0% |
| !! | TGTCATAGGTTTTGTGCTCA+AGG | - | chr3.3:26253269-26253288 | None:intergenic | 40.0% |
| AAAGCCTGATCTCAGGAAGA+AGG | + | chr3.3:26252800-26252819 | MS.gene070415:CDS | 45.0% | |
| ACATCACGGCCTTGAATGAT+TGG | - | chr3.3:26253905-26253924 | None:intergenic | 45.0% | |
| AGAAACAAACCAGAGAAGCC+GGG | - | chr3.3:26255638-26255657 | None:intergenic | 45.0% | |
| ATCTCCGTGAAGGGAATCAA+GGG | + | chr3.3:26252714-26252733 | MS.gene070415:CDS | 45.0% | |
| CAAGACCTCTATGAGCTCTA+AGG | + | chr3.3:26253960-26253979 | MS.gene070415:intron | 45.0% | |
| CTGGTAGACCTAGTGACATA+CGG | - | chr3.3:26252641-26252660 | None:intergenic | 45.0% | |
| CTGTACATCATCTCCGTGAA+GGG | + | chr3.3:26252705-26252724 | MS.gene070415:CDS | 45.0% | |
| GCCTTTAGGCTATCTGACAT+AGG | + | chr3.3:26255050-26255069 | MS.gene070415:intron | 45.0% | |
| GCGTTGTCATCAATGAAAGG+TGG | - | chr3.3:26255615-26255634 | None:intergenic | 45.0% | |
| GTGATGGCTACTGTGAAGAA+GGG | + | chr3.3:26252777-26252796 | MS.gene070415:CDS | 45.0% | |
| TAGAGGTCTTGCACTCTTAC+TGG | - | chr3.3:26253951-26253970 | None:intergenic | 45.0% | |
| TATGTCACTAGGTCTACCAG+TGG | + | chr3.3:26252641-26252660 | MS.gene070415:CDS | 45.0% | |
| TCATTTGTGTGAGGGACAGA+GGG | + | chr3.3:26255879-26255898 | MS.gene070415:intron | 45.0% | |
| TCGATAGGCAGGTAATCGAT+AGG | + | chr3.3:26255214-26255233 | MS.gene070415:intron | 45.0% | |
| TCTGTACATCATCTCCGTGA+AGG | + | chr3.3:26252704-26252723 | MS.gene070415:CDS | 45.0% | |
| TTACACGCGACAGACAGAAA+TGG | - | chr3.3:26255427-26255446 | None:intergenic | 45.0% | |
| TTCATTTGTGTGAGGGACAG+AGG | + | chr3.3:26255878-26255897 | MS.gene070415:intron | 45.0% | |
| ! | GTGAACTGTGCTGATAACAC+CGG | + | chr3.3:26252672-26252691 | MS.gene070415:CDS | 45.0% |
| ! | TTGTATAGGCTGGTTGGTGT+TGG | + | chr3.3:26255564-26255583 | MS.gene070415:intron | 45.0% |
| ! | TTTCATTGATGACAACGCCC+CGG | + | chr3.3:26255617-26255636 | MS.gene070415:CDS | 45.0% |
| !! | AGACAAAAGAAGTGTCTGCG+TGG | + | chr3.3:26254900-26254919 | MS.gene070415:intron | 45.0% |
| AGAAGGGAAAGCCTGATCTC+AGG | + | chr3.3:26252793-26252812 | MS.gene070415:CDS | 50.0% | |
| ATGTCACCAGCACAAGCTGA+AGG | - | chr3.3:26252756-26252775 | None:intergenic | 50.0% | |
| CATCTCCGTGAAGGGAATCA+AGG | + | chr3.3:26252713-26252732 | MS.gene070415:CDS | 50.0% | |
| CCTACCCTTGATTCCCTTCA+CGG | - | chr3.3:26252721-26252740 | None:intergenic | 50.0% | |
| GAAACAAACCAGAGAAGCCG+GGG | - | chr3.3:26255637-26255656 | None:intergenic | 50.0% | |
| GAGAGGGAGTTTAGGAAGCA+AGG | - | chr3.3:26256027-26256046 | None:intergenic | 50.0% | |
| GAGTCTGAGCAACGACATCA+CGG | - | chr3.3:26253919-26253938 | None:intergenic | 50.0% | |
| TTACCAGTCTGGCGTAACTG+GGG | - | chr3.3:26256054-26256073 | None:intergenic | 50.0% | |
| TTCTGTCTGTCGCGTGTAAG+TGG | + | chr3.3:26255428-26255447 | MS.gene070415:intron | 50.0% | |
| TTGTTCGTCAGCGTAAGCCA+TGG | + | chr3.3:26252838-26252857 | MS.gene070415:CDS | 50.0% | |
| ! | GGTGATGGCTACTGTGAAGA+AGG | + | chr3.3:26252776-26252795 | MS.gene070415:CDS | 50.0% |
| ! | TTCAGCTTGTGCTGGTGACA+TGG | + | chr3.3:26252755-26252774 | MS.gene070415:CDS | 50.0% |
| ! | TTGTGCTGGTGACATGGTGA+TGG | + | chr3.3:26252761-26252780 | MS.gene070415:CDS | 50.0% |
| !! | GGGGCGTTGTCATCAATGAA+AGG | - | chr3.3:26255618-26255637 | None:intergenic | 50.0% |
| ATTAGGTCGTGGTGGTTCCG+CGG | + | chr3.3:26252605-26252624 | MS.gene070415:intron | 55.0% | |
| CCGTGAAGGGAATCAAGGGT+AGG | + | chr3.3:26252718-26252737 | MS.gene070415:CDS | 55.0% | |
| CGCTGACGAACAATGACAGC+TGG | - | chr3.3:26252831-26252850 | None:intergenic | 55.0% | |
| CGTCTTCCTTCAGCTTGTGC+TGG | + | chr3.3:26252747-26252766 | MS.gene070415:CDS | 55.0% | |
| GCGTAACTGGGGTACAGAGA+GGG | - | chr3.3:26256043-26256062 | None:intergenic | 55.0% | |
| GGGGTACAGAGAGGGAGTTT+AGG | - | chr3.3:26256035-26256054 | None:intergenic | 55.0% | |
| GTCGCGTGTAAGTGGTACTG+TGG | + | chr3.3:26255436-26255455 | MS.gene070415:intron | 55.0% | |
| ! | CATACGGAACTTGTTCCCCG+CGG | - | chr3.3:26252625-26252644 | None:intergenic | 55.0% |
| ACACCATCCTTTCGGCGCCA+TGG | - | chr3.3:26252858-26252877 | None:intergenic | 60.0% | |
| AGGTCTACCAGTGGCAGCGA+CGG | + | chr3.3:26252650-26252669 | MS.gene070415:CDS | 60.0% | |
| AGTGTCTGCGTGGCTGCCAA+TGG | + | chr3.3:26254910-26254929 | MS.gene070415:intron | 60.0% | |
| GGCGTAACTGGGGTACAGAG+AGG | - | chr3.3:26256044-26256063 | None:intergenic | 60.0% | |
| GTACCCCAGTTACGCCAGAC+TGG | + | chr3.3:26256048-26256067 | MS.gene070415:CDS | 60.0% | |
| TCTTGACCCACGCTATCGCG+CGG | + | chr3.3:26253048-26253067 | MS.gene070415:intron | 60.0% | |
| TTAGGTCGTGGTGGTTCCGC+GGG | + | chr3.3:26252606-26252625 | MS.gene070415:intron | 60.0% | |
| ! | AAGCCATGGCGCCGAAAGGA+TGG | + | chr3.3:26252852-26252871 | MS.gene070415:CDS | 60.0% |
| !! | TAGGCTGGTTGGTGTTGGCG+AGG | + | chr3.3:26255569-26255588 | MS.gene070415:intron | 60.0% |
| AACAGACCCGCGCGATAGCG+TGG | - | chr3.3:26253058-26253077 | None:intergenic | 65.0% | |
| ACAGACCCGCGCGATAGCGT+GGG | - | chr3.3:26253057-26253076 | None:intergenic | 65.0% | |
| CAGTTCACCGTCGCTGCCAC+TGG | - | chr3.3:26252660-26252679 | None:intergenic | 65.0% | |
| CTTGACCCACGCTATCGCGC+GGG | + | chr3.3:26253049-26253068 | MS.gene070415:intron | 65.0% | |
| TAGGTCGTGGTGGTTCCGCG+GGG | + | chr3.3:26252607-26252626 | MS.gene070415:intron | 65.0% | |
| TGACAACGCCCCGGCTTCTC+TGG | + | chr3.3:26255626-26255645 | MS.gene070415:CDS | 65.0% | |
| ! | GCGTAAGCCATGGCGCCGAA+AGG | + | chr3.3:26252848-26252867 | MS.gene070415:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 26252514 | 26256073 | 26252514 | ID=MS.gene070415 |
| chr3.3 | mRNA | 26252514 | 26256073 | 26252514 | ID=MS.gene070415.t1;Parent=MS.gene070415 |
| chr3.3 | exon | 26252514 | 26252526 | 26252514 | ID=MS.gene070415.t1.exon1;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26252514 | 26252526 | 26252514 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| chr3.3 | exon | 26252610 | 26252894 | 26252610 | ID=MS.gene070415.t1.exon2;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26252610 | 26252894 | 26252610 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| chr3.3 | exon | 26254323 | 26254400 | 26254323 | ID=MS.gene070415.t1.exon3;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26254323 | 26254400 | 26254323 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| chr3.3 | exon | 26254748 | 26254807 | 26254748 | ID=MS.gene070415.t1.exon4;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26254748 | 26254807 | 26254748 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| chr3.3 | exon | 26255361 | 26255442 | 26255361 | ID=MS.gene070415.t1.exon5;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26255361 | 26255442 | 26255361 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| chr3.3 | exon | 26255572 | 26255647 | 26255572 | ID=MS.gene070415.t1.exon6;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26255572 | 26255647 | 26255572 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| chr3.3 | exon | 26256017 | 26256073 | 26256017 | ID=MS.gene070415.t1.exon7;Parent=MS.gene070415.t1 |
| chr3.3 | CDS | 26256017 | 26256073 | 26256017 | ID=cds.MS.gene070415.t1;Parent=MS.gene070415.t1 |
| Gene Sequence |
| Protein sequence |
