Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05380.t1 | XP_013452956.1 | 86.8 | 508 | 63 | 1 | 1 | 504 | 1 | 508 | 2.20E-116 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05380.t1 | Q84VY2 | 47.1 | 51 | 27 | 0 | 452 | 502 | 463 | 513 | 6.0e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05380.t1 | A0A072UB28 | 86.8 | 508 | 63 | 1 | 1 | 504 | 1 | 508 | 1.6e-116 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05380 | MS.gene057094 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene059171 | 0.805451 | 1.33E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene070415 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene072424 | 0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene074000 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene07608 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene09032 | 0.821399 | 4.12E-53 | -1.69E-46 |
| MS.gene05380 | MS.gene09212 | 0.824251 | 8.93E-54 | -1.69E-46 |
| MS.gene05380 | MS.gene26426 | 0.811442 | 6.99E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene37653 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene39222 | 0.813603 | 2.35E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene42455 | 0.807466 | 4.99E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene44260 | 0.805343 | 1.40E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene46392 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene46447 | 0.811023 | 8.61E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene49777 | 0.815698 | 8.09E-52 | -1.69E-46 |
| MS.gene05380 | MS.gene51515 | 0.801904 | 7.22E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene51920 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene54547 | 0.815463 | 9.13E-52 | -1.69E-46 |
| MS.gene05380 | MS.gene61001 | 0.803736 | 3.02E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene61542 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene65412 | 0.806528 | 7.88E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene66089 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene67107 | 0.812396 | 4.33E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene71547 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene74854 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene76478 | 0.825336 | 4.95E-54 | -1.69E-46 |
| MS.gene05380 | MS.gene77647 | 0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene87972 | 0.810954 | 8.92E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene88976 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene05380 | MS.gene91524 | 0.800674 | 1.29E-48 | -1.69E-46 |
| MS.gene05380 | MS.gene92572 | 0.815331 | 9.76E-52 | -1.69E-46 |
| MS.gene05380 | MS.gene93973 | 0.806373 | 8.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05380.t1 | MTR_6g082800 | 93.701 | 508 | 28 | 1 | 1 | 504 | 1 | 508 | 0.0 | 924 |
| MS.gene05380.t1 | MTR_8g032900 | 45.087 | 519 | 222 | 13 | 1 | 496 | 1 | 479 | 1.06e-106 | 327 |
| MS.gene05380.t1 | MTR_8g032930 | 43.393 | 560 | 206 | 16 | 1 | 504 | 1 | 505 | 2.12e-104 | 322 |
| MS.gene05380.t1 | MTR_3g093770 | 42.391 | 552 | 209 | 11 | 23 | 493 | 2 | 525 | 1.32e-101 | 315 |
| MS.gene05380.t1 | MTR_3g093750 | 44.658 | 468 | 198 | 11 | 1 | 443 | 1 | 432 | 1.60e-91 | 289 |
| MS.gene05380.t1 | MTR_5g075490 | 31.985 | 519 | 311 | 11 | 2 | 504 | 112 | 604 | 2.00e-59 | 206 |
| MS.gene05380.t1 | MTR_3g093720 | 56.164 | 146 | 52 | 2 | 115 | 248 | 46 | 191 | 1.95e-33 | 129 |
| MS.gene05380.t1 | MTR_3g467610 | 27.255 | 510 | 279 | 11 | 20 | 504 | 94 | 536 | 2.30e-33 | 133 |
| MS.gene05380.t1 | MTR_7g022780 | 37.838 | 222 | 113 | 4 | 232 | 453 | 3 | 199 | 1.08e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05380.t1 | AT5G05180 | 35.789 | 285 | 152 | 3 | 236 | 496 | 115 | 392 | 1.23e-41 | 154 |
| MS.gene05380.t1 | AT5G05180 | 35.789 | 285 | 152 | 3 | 236 | 496 | 145 | 422 | 1.40e-41 | 154 |
| MS.gene05380.t1 | AT5G05180 | 35.211 | 284 | 129 | 3 | 236 | 495 | 145 | 397 | 1.83e-38 | 145 |
| MS.gene05380.t1 | AT2G30500 | 27.296 | 392 | 203 | 9 | 123 | 503 | 194 | 514 | 6.17e-21 | 96.3 |
| MS.gene05380.t1 | AT2G30500 | 27.296 | 392 | 203 | 9 | 123 | 503 | 194 | 514 | 6.17e-21 | 96.3 |
| MS.gene05380.t1 | AT2G30500 | 27.296 | 392 | 203 | 9 | 123 | 503 | 193 | 513 | 7.49e-21 | 95.9 |
| MS.gene05380.t1 | AT5G58320 | 25.605 | 496 | 275 | 11 | 29 | 504 | 137 | 558 | 2.64e-19 | 91.7 |
| MS.gene05380.t1 | AT5G58320 | 25.605 | 496 | 275 | 11 | 29 | 504 | 137 | 558 | 2.64e-19 | 91.7 |
| MS.gene05380.t1 | AT3G10880 | 54.348 | 92 | 41 | 1 | 392 | 482 | 188 | 279 | 1.23e-17 | 83.6 |
| MS.gene05380.t1 | AT3G10880 | 54.348 | 92 | 41 | 1 | 392 | 482 | 188 | 279 | 1.23e-17 | 83.6 |
| MS.gene05380.t1 | AT3G10880 | 54.348 | 92 | 41 | 1 | 392 | 482 | 226 | 317 | 2.19e-17 | 83.6 |
| MS.gene05380.t1 | AT3G10880 | 54.348 | 92 | 41 | 1 | 392 | 482 | 226 | 317 | 2.19e-17 | 83.6 |
Find 91 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGTTCCACCAAATT+TGG | 0.113107 | 6.3:+76163625 | None:intergenic |
| GGAAACTCATGTTCCAAATT+TGG | 0.178648 | 6.3:-76163638 | MS.gene05380:CDS |
| TTAACTTGTTTGCTAATAAA+TGG | 0.193584 | 6.3:+76163236 | None:intergenic |
| ATGGAGGGCACTGGTGATTT+TGG | 0.209159 | 6.3:-76164219 | MS.gene05380:CDS |
| AGGCAAAATCAGTTCTTTAA+AGG | 0.247373 | 6.3:-76163161 | MS.gene05380:CDS |
| TGAAAGCTTAAGTTTCAAAT+TGG | 0.275719 | 6.3:+76163807 | None:intergenic |
| TGGTCCTCAACCTGTCAATT+TGG | 0.283380 | 6.3:-76164121 | MS.gene05380:CDS |
| GAAAGAATTAACACTGAATA+AGG | 0.291643 | 6.3:-76163719 | MS.gene05380:CDS |
| GGATGAACTTGAGTATAAAA+AGG | 0.292784 | 6.3:-76163698 | MS.gene05380:CDS |
| AGACGATCAAATAGCAAATA+TGG | 0.301429 | 6.3:-76162996 | MS.gene05380:CDS |
| AACAAACTGGCTTTGTCTTT+CGG | 0.304602 | 6.3:+76163903 | None:intergenic |
| GAGTTACCAACAAACTTTCT+TGG | 0.318911 | 6.3:+76164184 | None:intergenic |
| TCCAAATTTGGTGGAACAAT+TGG | 0.319106 | 6.3:-76163626 | MS.gene05380:CDS |
| TTAGAATGGCAGCTTGATTC+AGG | 0.321176 | 6.3:-76163472 | MS.gene05380:CDS |
| TGATTTGGAAGCTGTGAATA+AGG | 0.353331 | 6.3:-76163116 | MS.gene05380:CDS |
| AAAGACAAAGCCAGTTTGTT+GGG | 0.356883 | 6.3:-76163900 | MS.gene05380:CDS |
| TCATCAGAGAAGTAATGATT+TGG | 0.361754 | 6.3:-76163131 | MS.gene05380:CDS |
| TTCTGGTATGGAGTATAATA+TGG | 0.373850 | 6.3:+76164162 | None:intergenic |
| CACTCTCTTGTGCGCGAAGC+TGG | 0.374202 | 6.3:+76162960 | None:intergenic |
| ACTTCTGCAATCCCTGCTTC+TGG | 0.382177 | 6.3:+76164145 | None:intergenic |
| ATTTATTAGCAAACAAGTTA+AGG | 0.393675 | 6.3:-76163234 | MS.gene05380:CDS |
| CTGGCTTTGTCTTTCGGTAT+CGG | 0.409016 | 6.3:+76163909 | None:intergenic |
| TTTCTCCCTCCCCAACAAAC+TGG | 0.410837 | 6.3:+76163890 | None:intergenic |
| TGCAATCCCTGCTTCTGGTA+TGG | 0.419352 | 6.3:+76164150 | None:intergenic |
| GCGATGTGAAGCTGAACATT+TGG | 0.430456 | 6.3:-76163212 | MS.gene05380:CDS |
| CAAGCGAGAAACACAGTTGC+CGG | 0.433204 | 6.3:+76162804 | None:intergenic |
| TTCTTTCAGCTTACCTTGAG+TGG | 0.435903 | 6.3:+76163939 | None:intergenic |
| GACCTCAACACTGGAGGAAT+GGG | 0.440516 | 6.3:-76163269 | MS.gene05380:CDS |
| CAACTGAATTTAACTTTAGG+AGG | 0.443646 | 6.3:+76162712 | None:intergenic |
| TGCCACGATTGATAAACTTA+AGG | 0.449422 | 6.3:-76163035 | MS.gene05380:CDS |
| TTGGACTTCTCTCCTAGCTC+AGG | 0.462175 | 6.3:-76164102 | MS.gene05380:CDS |
| AAGAGAAGAGGGAGGCAATC+CGG | 0.472016 | 6.3:-76162823 | MS.gene05380:CDS |
| TCTTGACCAAGAAAGTTTGT+TGG | 0.482221 | 6.3:-76164190 | MS.gene05380:CDS |
| AAGCAGGGATTGCAGAAGTC+TGG | 0.482361 | 6.3:-76164141 | MS.gene05380:CDS |
| TTAACTTTAGGAGGCTATAA+CGG | 0.485803 | 6.3:+76162721 | None:intergenic |
| TTTCCTGTGCCACTTCAAGC+TGG | 0.485925 | 6.3:+76163506 | None:intergenic |
| CTCTGCCGCTTCTCAGAAGG+AGG | 0.490642 | 6.3:-76164070 | MS.gene05380:CDS |
| AAGTCCAAATTGACAGGTTG+AGG | 0.495784 | 6.3:+76164117 | None:intergenic |
| CTTCATCATTTGATATCTTG+AGG | 0.496814 | 6.3:+76163587 | None:intergenic |
| TGACCTCAACACTGGAGGAA+TGG | 0.502490 | 6.3:-76163270 | MS.gene05380:CDS |
| AACGGTATGACGCCTATGGC+CGG | 0.503832 | 6.3:+76162739 | None:intergenic |
| CAGAAAGCAAATTCGCGAGT+TGG | 0.511704 | 6.3:-76163449 | MS.gene05380:CDS |
| GAAAGACAAAGCCAGTTTGT+TGG | 0.512387 | 6.3:-76163901 | MS.gene05380:CDS |
| AAATTTGGTGGAACAATTGG+AGG | 0.514838 | 6.3:-76163623 | MS.gene05380:CDS |
| CGCGAAGCTGGATAAGCTCT+CGG | 0.518288 | 6.3:+76162972 | None:intergenic |
| TTATACTCCATACCAGAAGC+AGG | 0.522141 | 6.3:-76164157 | MS.gene05380:CDS |
| CTATAACGGTATGACGCCTA+TGG | 0.524854 | 6.3:+76162735 | None:intergenic |
| AAATTCGCGAGTTGGAAGAC+AGG | 0.526127 | 6.3:-76163441 | MS.gene05380:CDS |
| GAATATTGTGATCTCCGATC+GGG | 0.528397 | 6.3:-76162849 | MS.gene05380:CDS |
| AGCCTTAAGTTTATCAATCG+TGG | 0.528872 | 6.3:+76163033 | None:intergenic |
| CAATCTCAGATGGAGGGCAC+TGG | 0.528999 | 6.3:-76164228 | None:intergenic |
| AAAATGTGACTGAATTAGAA+TGG | 0.529237 | 6.3:-76163486 | MS.gene05380:CDS |
| CAAAGCCAGTTTGTTGGGGA+GGG | 0.537962 | 6.3:-76163895 | MS.gene05380:CDS |
| AACTCATGTTCCAAATTTGG+TGG | 0.541168 | 6.3:-76163635 | MS.gene05380:CDS |
| AGTTGGAAGACAGGATTACA+TGG | 0.543074 | 6.3:-76163432 | MS.gene05380:CDS |
| TTTGTCTTTCGGTATCGGCA+AGG | 0.543226 | 6.3:+76163914 | None:intergenic |
| GGATGAAATGCATGATGTGC+AGG | 0.543842 | 6.3:-76163362 | MS.gene05380:CDS |
| GGAGAGAAGTCCAAATTGAC+AGG | 0.545424 | 6.3:+76164111 | None:intergenic |
| AGACCAGCTTGAAGTGGCAC+AGG | 0.547887 | 6.3:-76163509 | MS.gene05380:CDS |
| CCTCTTCTCTTCATCCCGAT+CGG | 0.548058 | 6.3:+76162835 | None:intergenic |
| AGAGTCAGTTTCAGAATCAG+AGG | 0.550792 | 6.3:+76164020 | None:intergenic |
| GAGCTAACACCACCTGAGCT+AGG | 0.552383 | 6.3:+76164090 | None:intergenic |
| ACAAAGCCAGTTTGTTGGGG+AGG | 0.557241 | 6.3:-76163896 | MS.gene05380:CDS |
| TAGCTCTGCCGCTTCTCAGA+AGG | 0.557325 | 6.3:-76164073 | MS.gene05380:CDS |
| TGAAACTAACCTTGAACTTG+AGG | 0.567889 | 6.3:-76163398 | MS.gene05380:CDS |
| CAGTATTCACCGCCGTGCCA+TGG | 0.572576 | 6.3:+76163974 | None:intergenic |
| GACGATGAAGGAACCACTCA+AGG | 0.572786 | 6.3:-76163952 | MS.gene05380:CDS |
| TCTTTGCAATCTCAGATGGA+GGG | 0.575516 | 6.3:-76164234 | None:intergenic |
| CTCCCATTCCTCCAGTGTTG+AGG | 0.578084 | 6.3:+76163267 | None:intergenic |
| GAGCTACAAATGATTATGCA+AGG | 0.580646 | 6.3:-76163181 | MS.gene05380:CDS |
| TCGCTTGATCACTACAAGAG+TGG | 0.580993 | 6.3:-76162788 | MS.gene05380:CDS |
| AACACAGTTGACCTCAACAC+TGG | 0.582464 | 6.3:-76163278 | MS.gene05380:CDS |
| CGATCGGGATGAAGAGAAGA+GGG | 0.583720 | 6.3:-76162834 | MS.gene05380:CDS |
| GACTTCTCTCCTAGCTCAGG+TGG | 0.584402 | 6.3:-76164099 | MS.gene05380:CDS |
| AAGACAAAGCCAGTTTGTTG+GGG | 0.587713 | 6.3:-76163899 | MS.gene05380:CDS |
| AGAACCCTCCTTCTGAGAAG+CGG | 0.590742 | 6.3:+76164065 | None:intergenic |
| ATGCAATTGATCTTTCTCAA+AGG | 0.592144 | 6.3:+76163330 | None:intergenic |
| AGAATATTGTGATCTCCGAT+CGG | 0.598633 | 6.3:-76162850 | MS.gene05380:CDS |
| ATTGCAAGACCAGCTTGAAG+TGG | 0.606605 | 6.3:-76163515 | MS.gene05380:CDS |
| CCGATCGGGATGAAGAGAAG+AGG | 0.612539 | 6.3:-76162835 | MS.gene05380:CDS |
| GAATCAAAATGAGAAAAGTG+AGG | 0.626506 | 6.3:-76163761 | MS.gene05380:CDS |
| AATCAAAATGAGAAAAGTGA+GGG | 0.627000 | 6.3:-76163760 | MS.gene05380:CDS |
| GTCAGTTTCAGAATCAGAGG+AGG | 0.631262 | 6.3:+76164023 | None:intergenic |
| TGTAATTCATTACCATGGCA+CGG | 0.633012 | 6.3:-76163986 | MS.gene05380:CDS |
| GCGGTGAATACTGACGATGA+AGG | 0.643067 | 6.3:-76163964 | MS.gene05380:CDS |
| TATACTCCATACCAGAAGCA+GGG | 0.646612 | 6.3:-76164156 | MS.gene05380:CDS |
| ACAGTTGACCTCAACACTGG+AGG | 0.661595 | 6.3:-76163275 | MS.gene05380:CDS |
| AAGTCTGTAATTCATTACCA+TGG | 0.664113 | 6.3:-76163991 | MS.gene05380:CDS |
| TCTGCCGCTTCTCAGAAGGA+GGG | 0.673095 | 6.3:-76164069 | MS.gene05380:CDS |
| TCGGGATGAAGAGAAGAGGG+AGG | 0.677476 | 6.3:-76162831 | MS.gene05380:CDS |
| AATTCATTACCATGGCACGG+CGG | 0.798519 | 6.3:-76163983 | MS.gene05380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTAGCAAACAAGTTA+AGG | - | chr6.3:76163712-76163731 | MS.gene05380:CDS | 20.0% |
| !!! | TTAACTTGTTTGCTAATAAA+TGG | + | chr6.3:76163713-76163732 | None:intergenic | 20.0% |
| ! | AAAATGTGACTGAATTAGAA+TGG | - | chr6.3:76163460-76163479 | MS.gene05380:CDS | 25.0% |
| ! | AATCAAAATGAGAAAAGTGA+GGG | - | chr6.3:76163186-76163205 | MS.gene05380:CDS | 25.0% |
| ! | GAAAGAATTAACACTGAATA+AGG | - | chr6.3:76163227-76163246 | MS.gene05380:CDS | 25.0% |
| ! | GAAGAAGTTCATTAAAAATG+AGG | - | chr6.3:76163101-76163120 | MS.gene05380:CDS | 25.0% |
| ! | GATGAACTTGAGTATAAAAA+GGG | - | chr6.3:76163249-76163268 | MS.gene05380:CDS | 25.0% |
| ! | TGAAAGCTTAAGTTTCAAAT+TGG | + | chr6.3:76163142-76163161 | None:intergenic | 25.0% |
| AAGTCTGTAATTCATTACCA+TGG | - | chr6.3:76162955-76162974 | MS.gene05380:CDS | 30.0% | |
| AGACGATCAAATAGCAAATA+TGG | - | chr6.3:76163950-76163969 | MS.gene05380:CDS | 30.0% | |
| AGGCAAAATCAGTTCTTTAA+AGG | - | chr6.3:76163785-76163804 | MS.gene05380:CDS | 30.0% | |
| AGTAGAAGAACTTGAAAAAG+AGG | - | chr6.3:76164064-76164083 | MS.gene05380:CDS | 30.0% | |
| ATGCAATTGATCTTTCTCAA+AGG | + | chr6.3:76163619-76163638 | None:intergenic | 30.0% | |
| CTTCATCATTTGATATCTTG+AGG | + | chr6.3:76163362-76163381 | None:intergenic | 30.0% | |
| GAATCAAAATGAGAAAAGTG+AGG | - | chr6.3:76163185-76163204 | MS.gene05380:CDS | 30.0% | |
| GGATGAACTTGAGTATAAAA+AGG | - | chr6.3:76163248-76163267 | MS.gene05380:CDS | 30.0% | |
| TCATCAGAGAAGTAATGATT+TGG | - | chr6.3:76163815-76163834 | MS.gene05380:CDS | 30.0% | |
| TTCTGGTATGGAGTATAATA+TGG | + | chr6.3:76162787-76162806 | None:intergenic | 30.0% | |
| ! | GAAATTCTTCAAGCTTTTAC+CGG | - | chr6.3:76164188-76164207 | MS.gene05380:CDS | 30.0% |
| AACTCATGTTCCAAATTTGG+TGG | - | chr6.3:76163311-76163330 | MS.gene05380:CDS | 35.0% | |
| ACTTGAGTATAAAAAGGGAC+AGG | - | chr6.3:76163254-76163273 | MS.gene05380:CDS | 35.0% | |
| AGAATATTGTGATCTCCGAT+CGG | - | chr6.3:76164096-76164115 | MS.gene05380:CDS | 35.0% | |
| AGCCTTAAGTTTATCAATCG+TGG | + | chr6.3:76163916-76163935 | None:intergenic | 35.0% | |
| GAGCTACAAATGATTATGCA+AGG | - | chr6.3:76163765-76163784 | MS.gene05380:CDS | 35.0% | |
| GAGTTACCAACAAACTTTCT+TGG | + | chr6.3:76162765-76162784 | None:intergenic | 35.0% | |
| GGAAACTCATGTTCCAAATT+TGG | - | chr6.3:76163308-76163327 | MS.gene05380:CDS | 35.0% | |
| TCCAATTGTTCCACCAAATT+TGG | + | chr6.3:76163324-76163343 | None:intergenic | 35.0% | |
| TCTTGACCAAGAAAGTTTGT+TGG | - | chr6.3:76162756-76162775 | MS.gene05380:CDS | 35.0% | |
| TGAAACTAACCTTGAACTTG+AGG | - | chr6.3:76163548-76163567 | MS.gene05380:CDS | 35.0% | |
| TGCCACGATTGATAAACTTA+AGG | - | chr6.3:76163911-76163930 | MS.gene05380:CDS | 35.0% | |
| TGTAATTCATTACCATGGCA+CGG | - | chr6.3:76162960-76162979 | MS.gene05380:CDS | 35.0% | |
| ! | AAAGACAAAGCCAGTTTGTT+GGG | - | chr6.3:76163046-76163065 | MS.gene05380:CDS | 35.0% |
| ! | AAATTTGGTGGAACAATTGG+AGG | - | chr6.3:76163323-76163342 | MS.gene05380:CDS | 35.0% |
| ! | TCCAAATTTGGTGGAACAAT+TGG | - | chr6.3:76163320-76163339 | MS.gene05380:CDS | 35.0% |
| ! | TGATTTGGAAGCTGTGAATA+AGG | - | chr6.3:76163830-76163849 | MS.gene05380:CDS | 35.0% |
| !! | AACAAACTGGCTTTGTCTTT+CGG | + | chr6.3:76163046-76163065 | None:intergenic | 35.0% |
| !! | CTGTGAATAAGGATTTTGAC+AGG | - | chr6.3:76163841-76163860 | MS.gene05380:CDS | 35.0% |
| AAGTCCAAATTGACAGGTTG+AGG | + | chr6.3:76162832-76162851 | None:intergenic | 40.0% | |
| ACTTGAGGTGCAAAAACTGA+AGG | - | chr6.3:76163563-76163582 | MS.gene05380:CDS | 40.0% | |
| AGAGTCAGTTTCAGAATCAG+AGG | + | chr6.3:76162929-76162948 | None:intergenic | 40.0% | |
| AGTTGGAAGACAGGATTACA+TGG | - | chr6.3:76163514-76163533 | MS.gene05380:CDS | 40.0% | |
| GAAAGACAAAGCCAGTTTGT+TGG | - | chr6.3:76163045-76163064 | MS.gene05380:CDS | 40.0% | |
| GAATATTGTGATCTCCGATC+GGG | - | chr6.3:76164097-76164116 | MS.gene05380:CDS | 40.0% | |
| GCAAAAGCAAAAAGCTGAGT+TGG | - | chr6.3:76163287-76163306 | MS.gene05380:CDS | 40.0% | |
| TATACTCCATACCAGAAGCA+GGG | - | chr6.3:76162790-76162809 | MS.gene05380:CDS | 40.0% | |
| TTAGAATGGCAGCTTGATTC+AGG | - | chr6.3:76163474-76163493 | MS.gene05380:CDS | 40.0% | |
| TTATACTCCATACCAGAAGC+AGG | - | chr6.3:76162789-76162808 | MS.gene05380:CDS | 40.0% | |
| TTCTTTCAGCTTACCTTGAG+TGG | + | chr6.3:76163010-76163029 | None:intergenic | 40.0% | |
| ! | GTTTTTGCACCTCAAGTTCA+AGG | + | chr6.3:76163560-76163579 | None:intergenic | 40.0% |
| !! | AAGACAAAGCCAGTTTGTTG+GGG | - | chr6.3:76163047-76163066 | MS.gene05380:CDS | 40.0% |
| AACACAGTTGACCTCAACAC+TGG | - | chr6.3:76163668-76163687 | MS.gene05380:CDS | 45.0% | |
| AATTCATTACCATGGCACGG+CGG | - | chr6.3:76162963-76162982 | MS.gene05380:CDS | 45.0% | |
| ATTGCAAGACCAGCTTGAAG+TGG | - | chr6.3:76163431-76163450 | MS.gene05380:CDS | 45.0% | |
| CAGAAAGCAAATTCGCGAGT+TGG | - | chr6.3:76163497-76163516 | MS.gene05380:CDS | 45.0% | |
| CTATAACGGTATGACGCCTA+TGG | + | chr6.3:76164214-76164233 | None:intergenic | 45.0% | |
| GCGATGTGAAGCTGAACATT+TGG | - | chr6.3:76163734-76163753 | MS.gene05380:CDS | 45.0% | |
| GGAGAGAAGTCCAAATTGAC+AGG | + | chr6.3:76162838-76162857 | None:intergenic | 45.0% | |
| GGATGAAATGCATGATGTGC+AGG | - | chr6.3:76163584-76163603 | MS.gene05380:CDS | 45.0% | |
| GTATAAAAAGGGACAGGTGC+TGG | - | chr6.3:76163260-76163279 | MS.gene05380:CDS | 45.0% | |
| GTCAGTTTCAGAATCAGAGG+AGG | + | chr6.3:76162926-76162945 | None:intergenic | 45.0% | |
| TCGCTTGATCACTACAAGAG+TGG | - | chr6.3:76164158-76164177 | MS.gene05380:CDS | 45.0% | |
| TGGTCCTCAACCTGTCAATT+TGG | - | chr6.3:76162825-76162844 | MS.gene05380:CDS | 45.0% | |
| ! | AAATTCGCGAGTTGGAAGAC+AGG | - | chr6.3:76163505-76163524 | MS.gene05380:CDS | 45.0% |
| ! | TTCAAGCTTTTACCGGCCAT+AGG | - | chr6.3:76164195-76164214 | MS.gene05380:CDS | 45.0% |
| !! | CTGGCTTTGTCTTTCGGTAT+CGG | + | chr6.3:76163040-76163059 | None:intergenic | 45.0% |
| !! | TTTGTCTTTCGGTATCGGCA+AGG | + | chr6.3:76163035-76163054 | None:intergenic | 45.0% |
| AAGAGAAGAGGGAGGCAATC+CGG | - | chr6.3:76164123-76164142 | MS.gene05380:CDS | 50.0% | |
| AAGCAGGGATTGCAGAAGTC+TGG | - | chr6.3:76162805-76162824 | MS.gene05380:CDS | 50.0% | |
| ACAGTTGACCTCAACACTGG+AGG | - | chr6.3:76163671-76163690 | MS.gene05380:CDS | 50.0% | |
| ACTTCTGCAATCCCTGCTTC+TGG | + | chr6.3:76162804-76162823 | None:intergenic | 50.0% | |
| CAAGCGAGAAACACAGTTGC+CGG | + | chr6.3:76164145-76164164 | None:intergenic | 50.0% | |
| CCTCTTCTCTTCATCCCGAT+CGG | + | chr6.3:76164114-76164133 | None:intergenic | 50.0% | |
| CGATCGGGATGAAGAGAAGA+GGG | - | chr6.3:76164112-76164131 | MS.gene05380:CDS | 50.0% | |
| GACCTCAACACTGGAGGAAT+GGG | - | chr6.3:76163677-76163696 | MS.gene05380:CDS | 50.0% | |
| GACGATGAAGGAACCACTCA+AGG | - | chr6.3:76162994-76163013 | MS.gene05380:CDS | 50.0% | |
| GCGGTGAATACTGACGATGA+AGG | - | chr6.3:76162982-76163001 | MS.gene05380:CDS | 50.0% | |
| TGACCTCAACACTGGAGGAA+TGG | - | chr6.3:76163676-76163695 | MS.gene05380:CDS | 50.0% | |
| TGCAATCCCTGCTTCTGGTA+TGG | + | chr6.3:76162799-76162818 | None:intergenic | 50.0% | |
| TTGGACTTCTCTCCTAGCTC+AGG | - | chr6.3:76162844-76162863 | MS.gene05380:CDS | 50.0% | |
| TTTCTCCCTCCCCAACAAAC+TGG | + | chr6.3:76163059-76163078 | None:intergenic | 50.0% | |
| ! | AGAACCCTCCTTCTGAGAAG+CGG | + | chr6.3:76162884-76162903 | None:intergenic | 50.0% |
| !! | ACAAAGCCAGTTTGTTGGGG+AGG | - | chr6.3:76163050-76163069 | MS.gene05380:CDS | 50.0% |
| !! | CAAAGCCAGTTTGTTGGGGA+GGG | - | chr6.3:76163051-76163070 | MS.gene05380:CDS | 50.0% |
| !! | TTTCCTGTGCCACTTCAAGC+TGG | + | chr6.3:76163443-76163462 | None:intergenic | 50.0% |
| !!! | ATGGAGGGCACTGGTGATTT+TGG | - | chr6.3:76162727-76162746 | MS.gene05380:CDS | 50.0% |
| AACGGTATGACGCCTATGGC+CGG | + | chr6.3:76164210-76164229 | None:intergenic | 55.0% | |
| AGACCAGCTTGAAGTGGCAC+AGG | - | chr6.3:76163437-76163456 | MS.gene05380:CDS | 55.0% | |
| CCGATCGGGATGAAGAGAAG+AGG | - | chr6.3:76164111-76164130 | MS.gene05380:CDS | 55.0% | |
| CGCGAAGCTGGATAAGCTCT+CGG | + | chr6.3:76163977-76163996 | None:intergenic | 55.0% | |
| CTCCCATTCCTCCAGTGTTG+AGG | + | chr6.3:76163682-76163701 | None:intergenic | 55.0% | |
| GACTTCTCTCCTAGCTCAGG+TGG | - | chr6.3:76162847-76162866 | MS.gene05380:CDS | 55.0% | |
| GAGCTAACACCACCTGAGCT+AGG | + | chr6.3:76162859-76162878 | None:intergenic | 55.0% | |
| TCGGGATGAAGAGAAGAGGG+AGG | - | chr6.3:76164115-76164134 | MS.gene05380:CDS | 55.0% | |
| ! | TAGCTCTGCCGCTTCTCAGA+AGG | - | chr6.3:76162873-76162892 | MS.gene05380:CDS | 55.0% |
| ! | TCTGCCGCTTCTCAGAAGGA+GGG | - | chr6.3:76162877-76162896 | MS.gene05380:CDS | 55.0% |
| !!! | GGCACTGGTGATTTTGGCGA+AGG | - | chr6.3:76162733-76162752 | MS.gene05380:CDS | 55.0% |
| CACTCTCTTGTGCGCGAAGC+TGG | + | chr6.3:76163989-76164008 | None:intergenic | 60.0% | |
| CAGTATTCACCGCCGTGCCA+TGG | + | chr6.3:76162975-76162994 | None:intergenic | 60.0% | |
| ! | CTCTGCCGCTTCTCAGAAGG+AGG | - | chr6.3:76162876-76162895 | MS.gene05380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 76162727 | 76164241 | 76162727 | ID=MS.gene05380 |
| chr6.3 | mRNA | 76162727 | 76164241 | 76162727 | ID=MS.gene05380.t1;Parent=MS.gene05380 |
| chr6.3 | exon | 76162727 | 76164241 | 76162727 | ID=MS.gene05380.t1.exon1;Parent=MS.gene05380.t1 |
| chr6.3 | CDS | 76162727 | 76164241 | 76162727 | ID=cds.MS.gene05380.t1;Parent=MS.gene05380.t1 |
| Gene Sequence |
| Protein sequence |
