AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070588

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070588.t1 MTR_5g040770 77.558 303 20 1 1 303 586 840 7.00e-136 405
MS.gene070588.t1 MTR_5g037450 59.868 304 118 3 1 303 825 1125 1.37e-111 348
MS.gene070588.t1 MTR_5g035530 58.657 283 114 2 1 282 700 980 9.24e-108 335
MS.gene070588.t1 MTR_3g026660 59.498 279 111 1 1 279 805 1081 1.84e-99 315
MS.gene070588.t1 MTR_3g026660 59.498 279 111 1 1 279 862 1138 5.97e-99 315
MS.gene070588.t1 MTR_5g035280 58.029 274 113 1 3 276 820 1091 5.01e-90 291
MS.gene070588.t1 MTR_5g037500 46.237 279 98 3 2 279 757 984 3.05e-55 192
MS.gene070588.t1 MTR_5g035200 41.786 280 89 4 3 282 159 364 4.22e-52 175
MS.gene070588.t1 MTR_5g037460 51.087 184 67 1 120 303 666 826 5.07e-50 177
MS.gene070588.t1 MTR_5g035240 57.962 157 64 1 3 159 818 972 3.52e-47 169
MS.gene070588.t1 MTR_5g035480 41.758 273 107 4 2 273 775 996 4.90e-47 169
MS.gene070588.t1 MTR_0144s0010 34.641 306 165 8 1 284 119 411 1.14e-41 149
MS.gene070588.t1 MTR_8g036195 35.099 302 161 8 2 280 793 1082 3.47e-38 144
MS.gene070588.t1 MTR_6g046750 32.997 297 150 7 2 272 160 433 4.38e-38 140
MS.gene070588.t1 MTR_3g086070 33.670 297 162 5 2 277 808 1090 5.95e-38 143
MS.gene070588.t1 MTR_0256s0050 35.786 299 154 7 2 277 778 1061 6.19e-38 143
MS.gene070588.t1 MTR_6g046620 34.667 300 149 7 2 281 758 1030 6.68e-37 140
MS.gene070588.t1 MTR_6g046750 32.872 289 145 7 10 272 121 386 7.81e-37 136
MS.gene070588.t1 MTR_0133s0020 33.788 293 151 6 2 272 817 1088 1.26e-35 136
MS.gene070588.t1 MTR_6g046130 35.811 296 135 8 2 272 804 1069 1.75e-35 136
MS.gene070588.t1 MTR_3g023320 32.895 304 164 7 2 279 811 1100 7.06e-35 134
MS.gene070588.t1 MTR_6g052760 33.333 309 159 7 1 284 812 1098 1.26e-34 133
MS.gene070588.t1 MTR_6g046480 34.448 299 146 7 2 277 807 1078 3.35e-34 132
MS.gene070588.t1 MTR_6g046570 33.223 301 155 5 2 278 800 1078 7.39e-34 131
MS.gene070588.t1 MTR_6g052455 32.107 299 161 6 1 277 702 980 8.09e-34 131
MS.gene070588.t1 MTR_6g046760 32.776 299 153 7 2 276 157 431 1.28e-33 128
MS.gene070588.t1 MTR_4g055630 34.657 277 128 6 2 277 818 1042 1.52e-33 130
MS.gene070588.t1 MTR_6g047450 31.987 297 166 7 2 272 809 1095 4.37e-33 129
MS.gene070588.t1 MTR_0511s0020 33.663 303 150 9 1 277 794 1071 4.95e-33 129
MS.gene070588.t1 MTR_6g046440 33.779 299 162 6 1 277 751 1035 6.74e-33 128
MS.gene070588.t1 MTR_6g046550 33.922 283 155 5 26 278 376 656 4.83e-32 125
MS.gene070588.t1 MTR_6g046930 32.450 302 168 8 2 279 805 1094 8.57e-32 125
MS.gene070588.t1 MTR_5g035450 42.778 180 87 2 96 275 117 280 1.88e-31 122
MS.gene070588.t1 MTR_0133s0030 34.211 304 154 10 2 277 808 1093 4.94e-30 120
MS.gene070588.t1 MTR_5g071780 40.777 206 113 5 2 206 812 1009 1.29e-29 119
MS.gene070588.t1 MTR_5g071780 30.037 273 150 12 28 278 759 1012 1.64e-15 77.4
MS.gene070588.t1 MTR_0511s0010 33.641 217 121 4 88 282 23 238 1.90e-28 110
MS.gene070588.t1 MTR_5g071823 41.209 182 101 4 2 182 813 989 3.08e-28 115
MS.gene070588.t1 MTR_5g071823 29.749 279 142 12 28 277 759 1012 6.16e-18 84.7
MS.gene070588.t1 MTR_5g071850 41.209 182 101 4 2 182 813 989 3.08e-28 115
MS.gene070588.t1 MTR_5g071850 29.749 279 142 12 28 277 759 1012 6.16e-18 84.7
MS.gene070588.t1 MTR_5g071220 41.530 183 101 4 2 183 816 993 9.15e-28 113
MS.gene070588.t1 MTR_5g071220 32.716 162 88 7 120 271 859 1009 4.45e-13 70.1
MS.gene070588.t1 MTR_5g071220 41.530 183 101 4 2 183 816 993 9.35e-28 113
MS.gene070588.t1 MTR_5g071220 32.716 162 88 7 120 271 859 1009 4.30e-13 70.1
MS.gene070588.t1 MTR_1g022380 35.266 207 125 5 2 207 809 1007 3.57e-27 112
MS.gene070588.t1 MTR_7g071940 38.647 207 118 5 2 207 807 1005 3.67e-27 112
MS.gene070588.t1 MTR_5g072140 42.529 174 95 3 2 174 771 940 1.78e-26 109
MS.gene070588.t1 MTR_5g070960 38.462 208 119 5 2 208 817 1016 3.30e-26 108
MS.gene070588.t1 MTR_0230s0010 31.136 273 147 6 1 251 753 1006 8.00e-26 107
MS.gene070588.t1 MTR_5g034770 35.156 256 144 8 37 275 625 875 1.17e-24 104
MS.gene070588.t1 MTR_1g023600 39.444 180 103 4 2 180 811 985 2.00e-24 103
MS.gene070588.t1 MTR_1g023600 31.502 273 143 11 27 277 760 1010 5.98e-16 78.6
MS.gene070588.t1 MTR_6g046450 37.195 164 90 4 113 275 939 1090 1.08e-23 101
MS.gene070588.t1 MTR_0534s0010 33.679 193 105 4 90 282 2 171 1.62e-22 92.4
MS.gene070588.t1 MTR_5g028340 28.674 279 178 7 2 273 811 1075 1.84e-22 98.2
MS.gene070588.t1 MTR_6g046900 27.723 303 161 4 35 279 75 377 2.29e-22 96.3
MS.gene070588.t1 MTR_5g071470 35.577 208 102 6 2 208 811 987 2.42e-22 97.8
MS.gene070588.t1 MTR_5g071470 32.000 250 114 10 46 278 778 988 1.22e-15 77.8
MS.gene070588.t1 MTR_5g028750 27.451 255 166 6 26 275 831 1071 4.07e-22 97.1
MS.gene070588.t1 MTR_5g028610 30.000 290 161 9 2 277 814 1075 1.46e-21 95.5
MS.gene070588.t1 MTR_5g072340 36.019 211 103 5 2 211 813 992 2.75e-21 94.7
MS.gene070588.t1 MTR_5g072340 30.980 255 135 10 32 275 763 987 8.36e-14 72.4
MS.gene070588.t1 MTR_8g445980 27.839 273 126 5 80 282 575 846 5.49e-21 93.6
MS.gene070588.t1 MTR_5g028420 30.830 253 152 8 26 273 848 1082 1.84e-20 92.0
MS.gene070588.t1 MTR_4g126000 39.560 182 104 4 2 183 678 853 1.86e-20 92.0
MS.gene070588.t1 MTR_5g071670 35.211 213 106 6 2 213 804 985 3.37e-20 91.7
MS.gene070588.t1 MTR_5g071670 31.890 254 138 11 32 277 754 980 2.10e-17 83.2
MS.gene070588.t1 MTR_5g071800 31.599 269 159 9 24 277 753 1011 4.34e-20 90.9
MS.gene070588.t1 MTR_4g094540 33.708 267 159 11 24 279 595 854 4.88e-20 90.9
MS.gene070588.t1 MTR_4g119140 30.116 259 160 6 23 279 475 714 7.72e-20 90.1
MS.gene070588.t1 MTR_1g078490 29.703 303 134 9 29 279 567 842 2.00e-19 89.0
MS.gene070588.t1 MTR_5g071310 36.612 183 87 5 2 183 778 932 3.62e-19 88.6
MS.gene070588.t1 MTR_5g071310 30.556 216 133 6 70 275 744 952 1.98e-12 68.2
MS.gene070588.t1 MTR_5g070490 36.066 183 88 4 2 183 808 962 3.89e-19 88.2
MS.gene070588.t1 MTR_5g070490 30.916 262 136 11 32 280 758 987 1.73e-13 71.2
MS.gene070588.t1 MTR_5g028070 30.857 175 116 2 115 285 1070 1243 1.46e-18 86.7
MS.gene070588.t1 MTR_5g028290 28.244 262 160 7 26 273 867 1114 1.47e-18 86.7
MS.gene070588.t1 MTR_1g047910 32.308 195 122 5 90 278 673 863 6.64e-18 84.3
MS.gene070588.t1 MTR_5g076840 30.457 197 122 4 89 277 664 853 8.59e-18 84.3
MS.gene070588.t1 MTR_7g491180 28.856 201 124 4 86 277 671 861 2.44e-17 82.8
MS.gene070588.t1 MTR_7g091190 28.856 201 124 4 86 277 671 861 2.44e-17 82.8
MS.gene070588.t1 MTR_7g078300 31.321 265 134 6 62 279 585 848 3.46e-17 82.4
MS.gene070588.t1 MTR_5g070470 30.769 221 120 8 74 280 794 995 2.26e-16 80.1
MS.gene070588.t1 MTR_8g445160 28.333 300 149 11 12 282 421 683 4.28e-16 79.0
MS.gene070588.t1 MTR_5g040900 35.673 171 89 8 120 277 720 882 5.40e-16 79.0
MS.gene070588.t1 MTR_3g071010 30.682 264 156 8 24 283 187 427 2.73e-15 76.3
MS.gene070588.t1 MTR_3g071080 30.682 264 156 8 24 283 178 418 2.89e-15 76.3
MS.gene070588.t1 MTR_3g071040 30.682 264 156 8 24 283 178 418 2.89e-15 76.3
MS.gene070588.t1 MTR_7g078640 30.364 247 120 5 82 279 572 815 8.92e-15 75.1
MS.gene070588.t1 MTR_0144s0060 30.242 248 119 6 2 247 804 999 8.98e-15 75.1
MS.gene070588.t1 MTR_3g070650 30.303 264 157 8 24 283 259 499 1.28e-14 74.3
MS.gene070588.t1 MTR_4g119195 27.444 266 137 7 62 277 589 848 1.60e-14 74.3
MS.gene070588.t1 MTR_2g062360 26.613 248 147 4 62 277 352 596 1.71e-14 73.9
MS.gene070588.t1 MTR_3g086080 35.000 160 76 5 87 238 65 204 7.50e-14 70.1
MS.gene070588.t1 MTR_3g015560 33.835 133 84 2 148 277 709 840 1.34e-13 71.6
MS.gene070588.t1 MTR_8g011600 31.183 186 111 5 100 279 620 794 2.39e-13 70.9
MS.gene070588.t1 MTR_8g037220 30.723 166 97 3 115 279 1815 1963 2.51e-13 70.9
MS.gene070588.t1 MTR_8g037220 30.723 166 97 3 115 279 1594 1742 2.82e-13 70.9
MS.gene070588.t1 MTR_7g091140 30.723 166 108 3 120 281 703 865 3.37e-13 70.5
MS.gene070588.t1 MTR_5g071570 40.769 130 72 4 2 131 816 940 7.18e-13 69.3
MS.gene070588.t1 MTR_7g022290 35.000 160 92 5 120 272 358 512 1.25e-12 68.6
MS.gene070588.t1 MTR_7g091110 26.904 197 135 4 86 278 650 841 2.06e-12 68.2
MS.gene070588.t1 MTR_6g084540 28.837 215 135 7 73 282 30 231 5.50e-12 64.7
MS.gene070588.t1 MTR_4g019360 28.723 282 155 9 28 272 866 1138 1.55e-11 65.5
MS.gene070588.t1 MTR_3g022730 26.280 293 173 10 24 278 144 431 4.26e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 71 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGACAGATTCAACTTT+TGG 0.238584 5.4:-27806121 None:intergenic
GGACGTGGTGGTCGATGTTA+TGG 0.267611 5.4:+27806509 MS.gene070588:CDS
TCAGGCAAATATTCTAGTTT+TGG 0.275096 5.4:-27806263 None:intergenic
TGAAGGTTAATGATTTCATT+TGG 0.290980 5.4:-27805993 None:intergenic
AGTTGGTGATAAACAGGTTT+TGG 0.301395 5.4:-27806022 None:intergenic
AGTCCTTGCCTATTTCCTTT+TGG 0.305349 5.4:-27806427 None:intergenic
CCTCCCTTGATAGCCTTATC+AGG 0.309794 5.4:-27805692 None:intergenic
TCCTAATTTGAGCTGTCTTC+CGG 0.319493 5.4:+27806334 MS.gene070588:CDS
GGGAAACCTTTCCTTACTTC+AGG 0.321971 5.4:+27806292 MS.gene070588:CDS
AATTTGCATTTGTATATAGA+AGG 0.328178 5.4:+27805804 MS.gene070588:CDS
ATTTGGGAGCACCTCGAGTT+TGG 0.330994 5.4:-27805976 None:intergenic
CAAGGCAAACCAGACAAATT+AGG 0.335148 5.4:-27805765 None:intergenic
GACGTGGTGGTCGATGTTAT+GGG 0.343790 5.4:+27806510 MS.gene070588:CDS
CTTGATAGCCTTATCAGGTT+TGG 0.357678 5.4:-27805687 None:intergenic
AAGCGATGCCAAAAGGAAAT+AGG 0.358230 5.4:+27806419 MS.gene070588:CDS
AGTTGGAGGTTTAATGGCTT+TGG 0.362956 5.4:+27805641 None:intergenic
CTTGCATCTGTAAGGACAAT+AGG 0.370113 5.4:+27805939 MS.gene070588:CDS
TGGCATCGCTTCTCTATTTG+AGG 0.373572 5.4:-27806407 None:intergenic
GAACAATGGTGCACCCTATA+CGG 0.379628 5.4:-27806558 None:intergenic
GAAGGTTAATGATTTCATTT+GGG 0.386733 5.4:-27805992 None:intergenic
ACTGAATGTCCTAATTTGTC+TGG 0.395236 5.4:+27805756 MS.gene070588:CDS
GAAAGTAGGAAAGTAGGATA+TGG 0.397322 5.4:+27806485 MS.gene070588:CDS
TCGTGCAAACTTTCTACTTC+CGG 0.397911 5.4:-27806191 None:intergenic
GCCGGAAGACAGCTCAAATT+AGG 0.409291 5.4:-27806335 None:intergenic
AATAATTAATTCCTGAAGTA+AGG 0.419317 5.4:-27806303 None:intergenic
GAAATAGAAAGTAGGAAAGT+AGG 0.420117 5.4:+27806479 MS.gene070588:CDS
TGACACAGTTGGTGATAAAC+AGG 0.430735 5.4:-27806028 None:intergenic
ATAAGCTGCCAAACCTGATA+AGG 0.430834 5.4:+27805679 MS.gene070588:CDS
AGGTTTACTAAGACCTCATC+TGG 0.430915 5.4:-27805918 None:intergenic
TTTCGCAGGATCCTCCGTAT+AGG 0.438418 5.4:+27806544 MS.gene070588:CDS
GAATATTTGCCTGACTGGTT+GGG 0.441901 5.4:+27806272 MS.gene070588:CDS
CAAACCTGATAAGGCTATCA+AGG 0.442704 5.4:+27805688 MS.gene070588:CDS
TTCGCAGGATCCTCCGTATA+GGG 0.458186 5.4:+27806545 MS.gene070588:CDS
AACTAGAATATTTGCCTGAC+TGG 0.461219 5.4:+27806267 MS.gene070588:CDS
TAGTAAACCTTGCATCTGTA+AGG 0.474086 5.4:+27805931 MS.gene070588:CDS
CTATTTCAATACGCTGAACA+TGG 0.476673 5.4:-27806463 None:intergenic
GGATCCTGCGAAACATGTAT+AGG 0.479888 5.4:-27806534 None:intergenic
ATTTGCATTTGTATATAGAA+GGG 0.481898 5.4:+27805805 MS.gene070588:CDS
GGCATCGCTTCTCTATTTGA+GGG 0.485241 5.4:-27806406 None:intergenic
AGAATATTTGCCTGACTGGT+TGG 0.487178 5.4:+27806271 MS.gene070588:CDS
ATTGGTGATTGCTAGTTGTC+CGG 0.492481 5.4:+27806172 MS.gene070588:CDS
GAAAGGTTTCCCAACCAGTC+AGG 0.493456 5.4:-27806281 None:intergenic
CCAATGTCTCTAGACAAGTT+AGG 0.501236 5.4:-27806154 None:intergenic
AGTAGGAAAGTAGGATATGG+TGG 0.507294 5.4:+27806488 MS.gene070588:CDS
AATAGAGAAGCGATGCCAAA+AGG 0.512118 5.4:+27806412 MS.gene070588:CDS
AAATGCAAATTCTTGAGAGA+TGG 0.532574 5.4:-27805792 None:intergenic
GGGGCCTATACATGTTTCGC+AGG 0.541548 5.4:+27806530 MS.gene070588:CDS
TTAATTCCTGAAGTAAGGAA+AGG 0.544753 5.4:-27806298 None:intergenic
CTAAGATATTGGATGCTCGC+CGG 0.546286 5.4:-27806353 None:intergenic
CTATTGTCCTTACAGATGCA+AGG 0.547807 5.4:-27805938 None:intergenic
CAGTTATTTGAAGTACACTC+AGG 0.550816 5.4:-27805737 None:intergenic
CCTAACTTGTCTAGAGACAT+TGG 0.551083 5.4:+27806154 MS.gene070588:CDS
AGCGTATTGAAATAGAAAGT+AGG 0.557220 5.4:+27806471 MS.gene070588:CDS
CAAAAGTTGAATCTGTCAGA+AGG 0.568703 5.4:+27806122 MS.gene070588:CDS
GTTAACTTACTTTCCAGATG+AGG 0.568761 5.4:+27805905 MS.gene070588:CDS
ATAAGGCTATCAAGGGAGGA+TGG 0.579010 5.4:+27805696 MS.gene070588:CDS
AAAAGGAAATAGGCAAGGAC+TGG 0.580433 5.4:+27806429 MS.gene070588:CDS
TTGACAGATGAAGTATTGAA+AGG 0.593441 5.4:+27806062 MS.gene070588:CDS
AGTTATTTGAAGTACACTCA+GGG 0.593881 5.4:-27805736 None:intergenic
TTCTTGAGAGATGGAAGACA+AGG 0.598249 5.4:-27805783 None:intergenic
AAAGTAGGATATGGTGGACG+TGG 0.611189 5.4:+27806494 MS.gene070588:CDS
ACGTGGTGGTCGATGTTATG+GGG 0.618510 5.4:+27806511 MS.gene070588:CDS
AAACCTGATAAGGCTATCAA+GGG 0.618946 5.4:+27805689 MS.gene070588:CDS
TATTTCAATACGCTGAACAT+GGG 0.622061 5.4:-27806462 None:intergenic
GTAGGATATGGTGGACGTGG+TGG 0.634569 5.4:+27806497 MS.gene070588:CDS
ATGCCAAAAGGAAATAGGCA+AGG 0.637921 5.4:+27806424 MS.gene070588:CDS
TGACTCAATGCTGACACAGT+TGG 0.639961 5.4:-27806039 None:intergenic
TCATCATCACTCCAAACTCG+AGG 0.662567 5.4:+27805965 MS.gene070588:CDS
CCTGATAAGGCTATCAAGGG+AGG 0.667440 5.4:+27805692 MS.gene070588:CDS
GGAAGTAGAAAGTTTGCACG+AGG 0.688796 5.4:+27806193 MS.gene070588:CDS
CAATGGTGCACCCTATACGG+AGG 0.726893 5.4:-27806555 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAATTCCTGAAGTA+AGG - chr5.4:27806306-27806325 None:intergenic 20.0%
!! AATTTGCATTTGTATATAGA+AGG + chr5.4:27805804-27805823 MS.gene070588:CDS 20.0%
!! ATTTGCATTTGTATATAGAA+GGG + chr5.4:27805805-27805824 MS.gene070588:CDS 20.0%
! GAAGGTTAATGATTTCATTT+GGG - chr5.4:27805995-27806014 None:intergenic 25.0%
! TGAAGGTTAATGATTTCATT+TGG - chr5.4:27805996-27806015 None:intergenic 25.0%
!! TTTTTAGACTGCTAAGATAT+TGG - chr5.4:27806367-27806386 None:intergenic 25.0%
AAATGCAAATTCTTGAGAGA+TGG - chr5.4:27805795-27805814 None:intergenic 30.0%
AGCGTATTGAAATAGAAAGT+AGG + chr5.4:27806471-27806490 MS.gene070588:CDS 30.0%
GAAATAGAAAGTAGGAAAGT+AGG + chr5.4:27806479-27806498 MS.gene070588:CDS 30.0%
TATTTCAATACGCTGAACAT+GGG - chr5.4:27806465-27806484 None:intergenic 30.0%
TTAATTCCTGAAGTAAGGAA+AGG - chr5.4:27806301-27806320 None:intergenic 30.0%
! AGTTATTTGAAGTACACTCA+GGG - chr5.4:27805739-27805758 None:intergenic 30.0%
!! TTGACAGATGAAGTATTGAA+AGG + chr5.4:27806062-27806081 MS.gene070588:CDS 30.0%
!!! TCAGGCAAATATTCTAGTTT+TGG - chr5.4:27806266-27806285 None:intergenic 30.0%
AAACCTGATAAGGCTATCAA+GGG + chr5.4:27805689-27805708 MS.gene070588:CDS 35.0%
AACTAGAATATTTGCCTGAC+TGG + chr5.4:27806267-27806286 MS.gene070588:CDS 35.0%
CAAAAGTTGAATCTGTCAGA+AGG + chr5.4:27806122-27806141 MS.gene070588:CDS 35.0%
CTATTTCAATACGCTGAACA+TGG - chr5.4:27806466-27806485 None:intergenic 35.0%
GAAAGTAGGAAAGTAGGATA+TGG + chr5.4:27806485-27806504 MS.gene070588:CDS 35.0%
GTTAACTTACTTTCCAGATG+AGG + chr5.4:27805905-27805924 MS.gene070588:CDS 35.0%
TAGTAAACCTTGCATCTGTA+AGG + chr5.4:27805931-27805950 MS.gene070588:CDS 35.0%
! ACTGAATGTCCTAATTTGTC+TGG + chr5.4:27805756-27805775 MS.gene070588:CDS 35.0%
! CAGTTATTTGAAGTACACTC+AGG - chr5.4:27805740-27805759 None:intergenic 35.0%
! CTTCTGACAGATTCAACTTT+TGG - chr5.4:27806124-27806143 None:intergenic 35.0%
!!! AGTTGGTGATAAACAGGTTT+TGG - chr5.4:27806025-27806044 None:intergenic 35.0%
AAAAGGAAATAGGCAAGGAC+TGG + chr5.4:27806429-27806448 MS.gene070588:CDS 40.0%
AAGCGATGCCAAAAGGAAAT+AGG + chr5.4:27806419-27806438 MS.gene070588:CDS 40.0%
AATAGAGAAGCGATGCCAAA+AGG + chr5.4:27806412-27806431 MS.gene070588:CDS 40.0%
AGAATATTTGCCTGACTGGT+TGG + chr5.4:27806271-27806290 MS.gene070588:CDS 40.0%
AGGTTTACTAAGACCTCATC+TGG - chr5.4:27805921-27805940 None:intergenic 40.0%
AGTAGGAAAGTAGGATATGG+TGG + chr5.4:27806488-27806507 MS.gene070588:CDS 40.0%
ATAAGCTGCCAAACCTGATA+AGG + chr5.4:27805679-27805698 MS.gene070588:CDS 40.0%
ATGCCAAAAGGAAATAGGCA+AGG + chr5.4:27806424-27806443 MS.gene070588:CDS 40.0%
CAAACCTGATAAGGCTATCA+AGG + chr5.4:27805688-27805707 MS.gene070588:CDS 40.0%
CAAGGCAAACCAGACAAATT+AGG - chr5.4:27805768-27805787 None:intergenic 40.0%
CCAATGTCTCTAGACAAGTT+AGG - chr5.4:27806157-27806176 None:intergenic 40.0%
CTATTGTCCTTACAGATGCA+AGG - chr5.4:27805941-27805960 None:intergenic 40.0%
CTTGCATCTGTAAGGACAAT+AGG + chr5.4:27805939-27805958 MS.gene070588:CDS 40.0%
TCCTAATTTGAGCTGTCTTC+CGG + chr5.4:27806334-27806353 MS.gene070588:CDS 40.0%
TCGTGCAAACTTTCTACTTC+CGG - chr5.4:27806194-27806213 None:intergenic 40.0%
TTCTTGAGAGATGGAAGACA+AGG - chr5.4:27805786-27805805 None:intergenic 40.0%
! AGTCCTTGCCTATTTCCTTT+TGG - chr5.4:27806430-27806449 None:intergenic 40.0%
! ATTGGTGATTGCTAGTTGTC+CGG + chr5.4:27806172-27806191 MS.gene070588:CDS 40.0%
! CCTAACTTGTCTAGAGACAT+TGG + chr5.4:27806154-27806173 MS.gene070588:CDS 40.0%
! GAATATTTGCCTGACTGGTT+GGG + chr5.4:27806272-27806291 MS.gene070588:CDS 40.0%
!! CTTGATAGCCTTATCAGGTT+TGG - chr5.4:27805690-27805709 None:intergenic 40.0%
!! TGACACAGTTGGTGATAAAC+AGG - chr5.4:27806031-27806050 None:intergenic 40.0%
ATAAGGCTATCAAGGGAGGA+TGG + chr5.4:27805696-27805715 MS.gene070588:CDS 45.0%
CTAAGATATTGGATGCTCGC+CGG - chr5.4:27806356-27806375 None:intergenic 45.0%
GGAAGTAGAAAGTTTGCACG+AGG + chr5.4:27806193-27806212 MS.gene070588:CDS 45.0%
GGATCCTGCGAAACATGTAT+AGG - chr5.4:27806537-27806556 None:intergenic 45.0%
GGCATCGCTTCTCTATTTGA+GGG - chr5.4:27806409-27806428 None:intergenic 45.0%
GGGAAACCTTTCCTTACTTC+AGG + chr5.4:27806292-27806311 MS.gene070588:CDS 45.0%
TCATCATCACTCCAAACTCG+AGG + chr5.4:27805965-27805984 MS.gene070588:CDS 45.0%
TGACTCAATGCTGACACAGT+TGG - chr5.4:27806042-27806061 None:intergenic 45.0%
TGGCATCGCTTCTCTATTTG+AGG - chr5.4:27806410-27806429 None:intergenic 45.0%
!! AAAGTAGGATATGGTGGACG+TGG + chr5.4:27806494-27806513 MS.gene070588:CDS 45.0%
!!! ACAGGTTTTGGAGAGCATGA+AGG - chr5.4:27806013-27806032 None:intergenic 45.0%
ACGTGGTGGTCGATGTTATG+GGG + chr5.4:27806511-27806530 MS.gene070588:CDS 50.0%
CCTGATAAGGCTATCAAGGG+AGG + chr5.4:27805692-27805711 MS.gene070588:CDS 50.0%
GAAAGGTTTCCCAACCAGTC+AGG - chr5.4:27806284-27806303 None:intergenic 50.0%
GACGTGGTGGTCGATGTTAT+GGG + chr5.4:27806510-27806529 MS.gene070588:CDS 50.0%
GCCGGAAGACAGCTCAAATT+AGG - chr5.4:27806338-27806357 None:intergenic 50.0%
!! ATTTGGGAGCACCTCGAGTT+TGG - chr5.4:27805979-27805998 None:intergenic 50.0%
!! CCTCCCTTGATAGCCTTATC+AGG - chr5.4:27805695-27805714 None:intergenic 50.0%
GGACGTGGTGGTCGATGTTA+TGG + chr5.4:27806509-27806528 MS.gene070588:CDS 55.0%
GGGGCCTATACATGTTTCGC+AGG + chr5.4:27806530-27806549 MS.gene070588:CDS 55.0%
!! GTAGGATATGGTGGACGTGG+TGG + chr5.4:27806497-27806516 MS.gene070588:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 27805654 27806565 27805654 ID=MS.gene070588
chr5.4 mRNA 27805654 27806565 27805654 ID=MS.gene070588.t1;Parent=MS.gene070588
chr5.4 exon 27805654 27806565 27805654 ID=MS.gene070588.t1.exon1;Parent=MS.gene070588.t1
chr5.4 CDS 27805654 27806565 27805654 ID=cds.MS.gene070588.t1;Parent=MS.gene070588.t1
Gene Sequence

>MS.gene070588

ATGGCTTTGGAAGCTCTTATTCTAGATAAGCTGCCAAACCTGATAAGGCTATCAAGGGAGGATGGAGAAAATATGTTCATGACCCTGAGTGTACTTCAAATAACTGAATGTCCTAATTTGTCTGGTTTGCCTTGTCTTCCATCTCTCAAGAATTTGCATTTGTATATAGAAGGGAAATACAATCAAGATTTACTAAGATCAGTTAAAAAATTTGATAGTCTTGAAACGCTGCATTTTTTGAAGAATGATGAGTTAACTTACTTTCCAGATGAGGTCTTAGTAAACCTTGCATCTGTAAGGACAATAGGCTTTCATCATCACTCCAAACTCGAGGTGCTCCCAAATGAAATCATTAACCTTCATGCTCTCCAAAACCTGTTTATCACCAACTGTGTCAGCATTGAGTCATTGACAGATGAAGTATTGAAAGGACTATGCTCTCTCAAGTTGCTAGAGATTGTGAAATGCCAAAAGTTGAATCTGTCAGAAGGTTTTCAATACCTAACTTGTCTAGAGACATTGGTGATTGCTAGTTGTCCGGAAGTAGAAAGTTTGCACGAGGCTTTGCAACATATGACTGCTCTGCGATGCATTATATTGTCTGAACTTCCAAAACTAGAATATTTGCCTGACTGGTTGGGAAACCTTTCCTTACTTCAGGAATTAATTATTCTTGTGTGTCCTAATTTGAGCTGTCTTCCGGCGAGCATCCAATATCTTAGCAGTCTAAAAAGATTGTGTATTCAATGCTGCCCTCAAATAGAGAAGCGATGCCAAAAGGAAATAGGCAAGGACTGGTTAAAAATAGCCCATGTTCAGCGTATTGAAATAGAAAGTAGGAAAGTAGGATATGGTGGACGTGGTGGTCGATGTTATGGGGCCTATACATGTTTCGCAGGATCCTCCGTATAG
Protein sequence

>MS.gene070588.t1

MALEALILDKLPNLIRLSREDGENMFMTLSVLQITECPNLSGLPCLPSLKNLHLYIEGKYNQDLLRSVKKFDSLETLHFLKNDELTYFPDEVLVNLASVRTIGFHHHSKLEVLPNEIINLHALQNLFITNCVSIESLTDEVLKGLCSLKLLEIVKCQKLNLSEGFQYLTCLETLVIASCPEVESLHEALQHMTALRCIILSELPKLEYLPDWLGNLSLLQELIILVCPNLSCLPASIQYLSSLKRLCIQCCPQIEKRCQKEIGKDWLKIAHVQRIEIESRKVGYGGRGGRCYGAYTCFAGSSV