AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070698

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070698.t1 MTR_1g032570 81.931 321 42 3 1 320 24 329 1.14e-180 516
MS.gene070698.t1 MTR_1g032570 93.333 180 12 0 258 437 378 557 7.78e-94 293
MS.gene070698.t1 MTR_1g032570 81.931 321 42 3 1 320 93 398 9.67e-180 516
MS.gene070698.t1 MTR_1g032570 93.333 180 12 0 258 437 447 626 3.61e-93 294
MS.gene070698.t1 MTR_4g121020 53.138 239 102 5 1 235 9 241 1.69e-69 231
MS.gene070698.t1 MTR_4g121020 53.138 239 102 5 1 235 113 345 1.73e-68 230
MS.gene070698.t1 MTR_4g121020 53.138 239 102 5 1 235 113 345 1.80e-68 230
MS.gene070698.t1 MTR_2g034960 54.709 223 92 3 1 221 111 326 2.40e-65 220
MS.gene070698.t1 MTR_3g106220 50.000 206 81 4 7 205 96 286 9.21e-52 184
MS.gene070698.t1 MTR_3g086100 50.794 189 86 2 1 187 24 207 3.53e-51 180
MS.gene070698.t1 MTR_3g086100 50.794 189 86 2 1 187 95 278 2.19e-50 179
MS.gene070698.t1 MTR_8g079940 51.337 187 86 3 1 187 107 288 2.55e-50 179
MS.gene070698.t1 MTR_2g450070 46.262 214 101 5 7 210 106 315 1.00e-42 159
MS.gene070698.t1 MTR_2g450070 46.262 214 101 5 7 210 106 315 1.22e-42 159
MS.gene070698.t1 MTR_4g131600 46.009 213 100 7 1 212 102 300 2.90e-42 157
MS.gene070698.t1 MTR_1g013170 47.458 177 88 2 1 176 87 259 1.04e-41 154
MS.gene070698.t1 MTR_4g131580 44.928 207 102 6 4 210 103 297 3.13e-40 152
MS.gene070698.t1 MTR_4g131570 45.972 211 97 7 4 210 103 300 8.94e-39 148
MS.gene070698.t1 MTR_7g117705 43.137 204 89 6 1 194 88 274 1.42e-37 142
MS.gene070698.t1 MTR_4g021855 43.636 165 63 2 1 165 91 225 5.43e-35 132
MS.gene070698.t1 MTR_4g021760 43.293 164 63 3 1 164 92 225 2.72e-34 130
MS.gene070698.t1 MTR_1g013180 43.333 180 79 2 1 170 238 404 6.70e-34 134
MS.gene070698.t1 MTR_4g021790 43.636 165 63 3 1 165 91 225 1.02e-32 125
MS.gene070698.t1 MTR_3g102590 38.824 170 47 3 10 177 100 214 1.75e-31 120
MS.gene070698.t1 MTR_4g021845 39.490 157 65 1 1 157 91 217 5.71e-31 119
MS.gene070698.t1 MTR_6g045327 43.030 165 61 5 1 164 96 228 1.08e-28 116
MS.gene070698.t1 MTR_3g102590 37.838 148 37 2 10 157 100 192 2.07e-26 105
MS.gene070698.t1 MTR_0450s0040 36.126 191 92 5 1 190 86 247 1.03e-25 107
MS.gene070698.t1 MTR_8g105600 35.912 181 84 3 1 173 91 247 1.25e-25 109
MS.gene070698.t1 MTR_7g026400 34.896 192 100 5 1 191 69 236 6.61e-25 107
MS.gene070698.t1 MTR_4g064730 58.442 77 28 1 94 166 113 189 7.17e-22 95.9
MS.gene070698.t1 MTR_3g102600 57.971 69 29 0 106 174 81 149 7.66e-22 92.8
MS.gene070698.t1 MTR_1g013160 40.146 137 67 2 1 131 21 148 1.02e-21 91.7
MS.gene070698.t1 MTR_3g102600 57.971 69 29 0 106 174 130 198 1.08e-21 93.6
MS.gene070698.t1 MTR_7g089010 64.516 62 22 0 105 166 88 149 9.68e-21 92.4
MS.gene070698.t1 MTR_4g023980 35.821 134 56 2 1 134 71 174 2.05e-18 83.2
MS.gene070698.t1 MTR_5g055260 35.220 159 53 4 7 165 90 198 1.15e-17 82.8
MS.gene070698.t1 MTR_3g102600 61.111 54 21 0 106 159 81 134 1.40e-17 79.3
MS.gene070698.t1 MTR_3g102600 53.571 56 21 1 1 56 41 91 5.66e-11 60.8
MS.gene070698.t1 MTR_5g014040 60.000 60 24 0 107 166 310 369 1.71e-17 85.1
MS.gene070698.t1 MTR_4g078810 37.778 135 72 2 44 166 82 216 2.81e-17 84.0
MS.gene070698.t1 MTR_3g102600 62.264 53 20 0 107 159 131 183 6.86e-17 79.0
MS.gene070698.t1 MTR_4g098870 60.000 60 24 0 107 166 309 368 8.01e-17 83.2
MS.gene070698.t1 MTR_4g098870 60.000 60 24 0 107 166 329 388 8.94e-17 83.2
MS.gene070698.t1 MTR_4g098870 60.000 60 24 0 107 166 309 368 9.17e-17 82.8
MS.gene070698.t1 MTR_4g098870 60.000 60 24 0 107 166 329 388 9.51e-17 82.8
MS.gene070698.t1 MTR_4g098870 60.000 60 24 0 107 166 348 407 9.82e-17 82.8
MS.gene070698.t1 MTR_2g090675 56.061 66 29 0 101 166 154 219 3.61e-16 80.5
MS.gene070698.t1 MTR_5g014040 55.385 65 24 1 107 166 270 334 1.55e-15 79.0
MS.gene070698.t1 MTR_5g014040 55.385 65 24 1 107 166 310 374 1.71e-15 79.0
MS.gene070698.t1 MTR_5g041350 57.627 59 24 1 104 161 11 69 3.19e-15 77.0
MS.gene070698.t1 MTR_6g032990 46.753 77 32 2 104 179 38 106 3.03e-14 74.3
MS.gene070698.t1 MTR_6g453220 64.151 53 19 0 124 176 379 431 3.69e-14 74.7
MS.gene070698.t1 MTR_5g017980 50.725 69 34 0 105 173 190 258 4.68e-14 73.2
MS.gene070698.t1 MTR_5g017980 50.725 69 34 0 105 173 189 257 4.90e-14 73.2
MS.gene070698.t1 MTR_4g081710 54.237 59 26 1 104 161 13 71 6.43e-14 73.2
MS.gene070698.t1 MTR_6g444980 59.322 59 23 1 104 161 31 89 7.69e-14 72.8
MS.gene070698.t1 MTR_2g086450 54.237 59 26 1 104 161 41 99 8.40e-14 73.2
MS.gene070698.t1 MTR_6g444980 59.322 59 23 1 104 161 31 89 8.52e-14 72.8
MS.gene070698.t1 MTR_1g093080 51.471 68 32 1 101 167 204 271 9.40e-14 72.8
MS.gene070698.t1 MTR_4g086835 53.226 62 29 0 105 166 271 332 1.01e-13 73.2
MS.gene070698.t1 MTR_7g115530 62.963 54 19 1 108 160 218 271 4.41e-13 70.1
MS.gene070698.t1 MTR_7g115530 62.963 54 19 1 108 160 218 271 6.41e-13 69.7
MS.gene070698.t1 MTR_5g017980 50.000 70 34 1 105 173 190 259 6.72e-13 69.7
MS.gene070698.t1 MTR_7g115530 62.963 54 19 1 108 160 218 271 9.39e-13 70.1
MS.gene070698.t1 MTR_7g115530 62.963 54 19 1 108 160 218 271 1.07e-12 69.3
MS.gene070698.t1 MTR_5g054300 47.826 69 35 1 107 174 197 265 1.99e-12 68.6
MS.gene070698.t1 MTR_1g080330 41.284 109 58 4 56 160 122 228 2.12e-12 67.8
MS.gene070698.t1 MTR_4g113140 48.052 77 37 2 100 175 227 301 2.83e-12 68.6
MS.gene070698.t1 MTR_7g098250 55.172 58 25 1 104 160 258 315 2.91e-12 68.9
MS.gene070698.t1 MTR_4g086835 52.381 63 29 1 105 166 271 333 3.26e-12 68.2
MS.gene070698.t1 MTR_1g090670 58.182 55 22 1 108 161 44 98 3.96e-12 67.0
MS.gene070698.t1 MTR_1g080330 52.941 68 25 2 100 160 161 228 6.35e-12 67.4
MS.gene070698.t1 MTR_7g115530 62.264 53 19 1 108 159 218 270 7.67e-12 65.9
MS.gene070698.t1 MTR_7g088070 54.545 55 24 1 108 161 50 104 1.36e-11 65.5
MS.gene070698.t1 MTR_7g088070 54.545 55 24 1 108 161 50 104 1.38e-11 65.1
MS.gene070698.t1 MTR_5g027440 52.727 55 25 1 108 161 25 79 2.17e-11 64.7
MS.gene070698.t1 MTR_2g027800 48.649 74 33 2 89 161 24 93 2.59e-11 64.7
MS.gene070698.t1 MTR_2g027800 48.649 74 33 2 89 161 24 93 2.61e-11 64.7
MS.gene070698.t1 MTR_1g053830 47.458 59 30 1 104 161 14 72 4.96e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070698.t1 AT2G01760 53.478 230 83 5 1 224 25 236 2.48e-63 207
MS.gene070698.t1 AT2G01760 53.478 230 83 5 1 224 90 301 1.46e-62 207
MS.gene070698.t1 AT3G16857 48.750 240 105 3 1 222 45 284 1.94e-62 213
MS.gene070698.t1 AT2G01760 53.478 230 83 5 1 224 118 329 2.30e-62 207
MS.gene070698.t1 AT3G16857 48.750 240 105 3 1 222 115 354 8.60e-62 212
MS.gene070698.t1 AT3G16857 48.750 240 105 3 1 222 115 354 1.14e-61 212
MS.gene070698.t1 AT2G25180 54.386 171 69 3 10 179 104 266 1.46e-46 169
MS.gene070698.t1 AT1G67710 54.118 170 68 5 1 166 15 178 1.47e-43 159
MS.gene070698.t1 AT1G67710 54.118 170 68 5 1 166 24 187 2.83e-43 158
MS.gene070698.t1 AT1G67710 54.118 170 68 5 1 166 89 252 9.81e-43 157
MS.gene070698.t1 AT5G58080 42.130 216 108 4 9 217 103 308 3.54e-40 152
MS.gene070698.t1 AT4G31920 48.780 164 65 2 10 173 104 248 2.86e-39 149
MS.gene070698.t1 AT3G62670 32.669 251 130 8 1 235 117 344 1.42e-24 105
MS.gene070698.t1 AT5G49240 37.097 186 84 7 1 173 120 285 2.84e-24 102
MS.gene070698.t1 AT1G49190 32.683 205 110 5 1 191 112 302 1.64e-23 102
MS.gene070698.t1 AT5G59570 51.163 86 42 0 89 174 122 207 1.80e-22 97.4
MS.gene070698.t1 AT5G59570 51.163 86 42 0 89 174 122 207 1.80e-22 97.4
MS.gene070698.t1 AT5G05090 62.687 67 24 1 101 166 73 139 1.24e-21 94.4
MS.gene070698.t1 AT3G46640 64.516 62 22 0 105 166 141 202 1.69e-21 95.1
MS.gene070698.t1 AT3G46640 64.516 62 22 0 105 166 141 202 1.69e-21 95.1
MS.gene070698.t1 AT3G46640 64.516 62 22 0 105 166 141 202 2.20e-21 94.7
MS.gene070698.t1 AT3G10760 62.687 67 24 1 101 166 97 163 2.76e-21 94.7
MS.gene070698.t1 AT2G40970 62.903 62 23 0 105 166 102 163 6.56e-21 92.0
MS.gene070698.t1 AT5G44190 42.520 127 66 3 99 221 141 264 3.22e-19 89.0
MS.gene070698.t1 AT5G44190 64.706 68 21 1 99 166 141 205 3.50e-19 89.4
MS.gene070698.t1 AT5G07210 43.434 99 54 1 69 167 193 289 1.11e-17 85.9
MS.gene070698.t1 AT5G07210 43.434 99 54 1 69 167 185 281 1.11e-17 85.9
MS.gene070698.t1 AT2G27070 56.061 66 26 1 107 172 224 286 1.64e-16 82.4
MS.gene070698.t1 AT2G20570 63.333 60 22 0 107 166 152 211 1.69e-16 81.6
MS.gene070698.t1 AT2G20570 64.912 57 20 0 110 166 171 227 5.91e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.10e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.10e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.10e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.10e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.10e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.10e-16 80.1
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.17e-16 80.5
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.17e-16 80.5
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.17e-16 80.5
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.17e-16 80.5
MS.gene070698.t1 AT4G18020 34.586 133 78 1 43 166 222 354 6.17e-16 80.5
MS.gene070698.t1 AT3G04030 55.932 59 25 1 104 161 41 99 2.44e-14 74.7
MS.gene070698.t1 AT3G04030 55.932 59 25 1 104 161 41 99 2.71e-14 74.7
MS.gene070698.t1 AT5G18240 57.627 59 24 1 104 161 41 99 2.78e-14 74.7
MS.gene070698.t1 AT5G18240 57.627 59 24 1 104 161 41 99 2.78e-14 74.7
MS.gene070698.t1 AT5G18240 57.627 59 24 1 104 161 41 99 3.00e-14 74.7
MS.gene070698.t1 AT5G18240 57.627 59 24 1 104 161 41 99 3.20e-14 74.3
MS.gene070698.t1 AT5G18240 57.627 59 24 1 104 161 41 99 3.20e-14 74.3
MS.gene070698.t1 AT1G79430 59.322 59 23 1 104 161 30 88 8.47e-14 72.8
MS.gene070698.t1 AT3G24120 57.627 59 24 1 104 161 37 95 1.18e-13 71.6
MS.gene070698.t1 AT3G24120 57.627 59 24 1 104 161 37 95 1.19e-13 71.6
MS.gene070698.t1 AT4G13640 57.627 59 24 1 104 161 33 91 2.73e-13 70.5
MS.gene070698.t1 AT4G13640 57.627 59 24 1 104 161 33 91 2.87e-13 70.5
MS.gene070698.t1 AT3G04030 51.724 58 28 0 104 161 41 98 3.27e-13 71.2
MS.gene070698.t1 AT1G69580 52.542 59 27 1 104 161 30 88 3.82e-13 70.9
MS.gene070698.t1 AT1G69580 52.542 59 27 1 104 161 30 88 3.90e-13 70.5
MS.gene070698.t1 AT3G12730 54.237 59 26 1 104 161 19 77 1.54e-12 67.4
MS.gene070698.t1 AT5G45580 52.727 55 25 1 108 161 7 61 1.10e-11 65.5
MS.gene070698.t1 AT2G01060 50.725 69 31 2 96 161 1 69 1.16e-11 65.5
MS.gene070698.t1 AT5G45580 52.727 55 25 1 108 161 23 77 1.23e-11 65.5
MS.gene070698.t1 AT3G04450 51.724 58 27 1 104 160 234 291 2.37e-11 65.1
MS.gene070698.t1 AT3G04450 51.724 58 27 1 104 160 234 291 3.68e-11 65.1
MS.gene070698.t1 AT3G04450 51.724 58 27 1 104 160 194 251 3.69e-11 65.1
MS.gene070698.t1 AT3G04450 51.724 58 27 1 104 160 194 251 3.69e-11 65.1
MS.gene070698.t1 AT5G29000 55.172 58 24 2 104 160 228 284 3.96e-11 64.3
MS.gene070698.t1 AT2G03500 48.438 64 32 1 105 167 230 293 4.94e-11 64.7
MS.gene070698.t1 AT5G29000 55.172 58 24 2 104 160 185 241 6.14e-11 64.3
MS.gene070698.t1 AT5G29000 55.172 58 24 2 104 160 185 241 6.14e-11 64.3
MS.gene070698.t1 AT5G29000 55.172 58 24 2 104 160 228 284 6.20e-11 64.3
MS.gene070698.t1 AT1G68670 41.379 87 48 2 92 175 199 285 6.99e-11 63.9

Find 95 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTGAATATTGTTATTTA+TGG 0.028003 1.4:-17098799 None:intergenic
TGAAGAGCTGCAAGTGTTTC+AGG 0.164593 1.4:-17098204 None:intergenic
CTTAGAAATCTTGGATTTGT+TGG 0.296022 1.4:+17098939 MS.gene070698:CDS
GCTCTTCAGGCGGAGCTCTT+AGG 0.299128 1.4:+17098219 MS.gene070698:CDS
ATCATTTCAAGTATTCTCTT+TGG 0.304128 1.4:-17096767 None:intergenic
GTCAACAAGGATAGCAGTTT+TGG 0.309228 1.4:+17098645 MS.gene070698:CDS
AATAAGGAACATGATAATTC+TGG 0.316091 1.4:+17096362 MS.gene070698:CDS
TGAAACACTTGCAGCTCTTC+AGG 0.318742 1.4:+17098206 MS.gene070698:CDS
TAAAATCATTTGCAGATGAT+TGG 0.319690 1.4:-17098998 None:intergenic
ATATGACTCGGTTCCTCCTT+TGG 0.321199 1.4:-17099071 None:intergenic
TAGTCAAATGAAAGTATTCA+TGG 0.326858 1.4:+17099019 MS.gene070698:CDS
GAAGTATGTCTTAGAAATCT+TGG 0.340115 1.4:+17098930 MS.gene070698:CDS
CAAAACTCAACTTTAACATT+TGG 0.341966 1.4:+17098825 MS.gene070698:CDS
ATACAGGCTTTGGCTGGTTC+TGG 0.349018 1.4:+17098171 MS.gene070698:CDS
AAATGTTGCAAGTCATTTGC+AGG 0.369685 1.4:+17096814 MS.gene070698:CDS
AGAGGATATTTGAGGAGAAA+TGG 0.372882 1.4:-17098763 None:intergenic
TGGAAGAACTAAGGAATATA+TGG 0.378920 1.4:+17096309 MS.gene070698:CDS
GTAGGCATTATGTTAGTTGC+CGG 0.379535 1.4:-17098246 None:intergenic
GACAACACTTCTTCTGTTGC+TGG 0.380394 1.4:+17096431 MS.gene070698:CDS
AATCTTGGATTTGTTGGAAA+AGG 0.398853 1.4:+17098945 MS.gene070698:CDS
GATGGATAATTCTGTAGAAC+TGG 0.405841 1.4:-17099116 None:intergenic
TCGCTGGATTTAATATCATA+TGG 0.407074 1.4:-17098897 None:intergenic
GAATCCAAGCTGGCTGCTAC+TGG 0.407160 1.4:+17098138 MS.gene070698:CDS
CGAGGCTTCTTAGATGTAGA+TGG 0.408023 1.4:-17096533 None:intergenic
AGAACTGGGTGGCTCGCATT+TGG 0.408581 1.4:-17099101 None:intergenic
TCTGTTGCTGGTGCAACAAA+AGG 0.420915 1.4:+17096443 MS.gene070698:CDS
GGGATGTTAAACACAGTTCA+TGG 0.434178 1.4:+17098108 MS.gene070698:CDS
TGATTGACTATAATCAATAA+TGG 0.457615 1.4:-17098676 None:intergenic
AAGATATGACATACAGGCTT+TGG 0.459864 1.4:+17098161 MS.gene070698:CDS
AAAAGATGAAGATGTTGAGT+TGG 0.460862 1.4:+17096499 MS.gene070698:CDS
CTTAGTTCTTCCATCCGTAC+AGG 0.475894 1.4:-17096299 None:intergenic
ACTAATGCATGCATCTGTAC+AGG 0.484480 1.4:+17098284 MS.gene070698:CDS
TACTTCATCAAGTGAATCGC+TGG 0.487337 1.4:-17098913 None:intergenic
GGATATTTGAGGAGAAATGG+AGG 0.494211 1.4:-17098760 None:intergenic
CAGTGATGTCTGTTGATGAT+AGG 0.497216 1.4:+17096222 None:intergenic
TCTTCCAGTAGCAGCCAGCT+TGG 0.497263 1.4:-17098142 None:intergenic
GAAGAGCTGCAAGTGTTTCA+GGG 0.504164 1.4:-17098203 None:intergenic
TATGACATACAGGCTTTGGC+TGG 0.508995 1.4:+17098165 MS.gene070698:CDS
GTAGCTCTTGTGTCTCCGCC+AGG 0.509868 1.4:-17098738 None:intergenic
GTCTAAGTGTCAAGGGGAGA+AGG 0.513330 1.4:-17098869 None:intergenic
AATTTAGACTTTATTTGAAG+AGG 0.514433 1.4:+17098058 MS.gene070698:CDS
AGATAATGATCGCAATCCAC+GGG 0.525937 1.4:+17096394 MS.gene070698:CDS
TCGAGTTCATCTCAATATCC+TGG 0.526488 1.4:+17098720 MS.gene070698:CDS
AGTGTCAAGGGGAGAAGGCT+AGG 0.528820 1.4:-17098864 None:intergenic
GTGGTGGCGCATCAACAGAA+TGG 0.530597 1.4:+17098087 MS.gene070698:CDS
TACTGGAAGATATGACATAC+AGG 0.531861 1.4:+17098155 MS.gene070698:CDS
TAGGCATTATGTTAGTTGCC+GGG 0.533217 1.4:-17098245 None:intergenic
CTAATGCATGCATCTGTACA+GGG 0.539995 1.4:+17098285 MS.gene070698:CDS
TTCAAGTATTCTCTTTGGCA+CGG 0.540957 1.4:-17096762 None:intergenic
GGCGGAGCTCTTAGGTCACC+CGG 0.553138 1.4:+17098227 MS.gene070698:CDS
TAGGACAAGTACTGTCATGA+AGG 0.556092 1.4:+17096241 MS.gene070698:CDS
GGAACTTGTCTAAGTGTCAA+GGG 0.557917 1.4:-17098876 None:intergenic
TTTGAAGAGGTTAAGTGTGG+TGG 0.558644 1.4:+17098071 MS.gene070698:CDS
AAATTATTGACGATGTCGAA+AGG 0.566946 1.4:-17098345 None:intergenic
AAGATAATGATCGCAATCCA+CGG 0.569085 1.4:+17096393 MS.gene070698:CDS
TGGAACTTGTCTAAGTGTCA+AGG 0.569185 1.4:-17098877 None:intergenic
CTGTACGGATGGAAGAACTA+AGG 0.571403 1.4:+17096300 MS.gene070698:CDS
ATGCATGCATTAGTGCAGTC+CGG 0.579695 1.4:-17098275 None:intergenic
AATTATTGACGATGTCGAAA+GGG 0.582045 1.4:-17098344 None:intergenic
ATATATGGCAGCATGTTGCT+AGG 0.583349 1.4:+17096324 MS.gene070698:CDS
TGGTGGCGCATCAACAGAAT+GGG 0.586758 1.4:+17098088 MS.gene070698:CDS
AGTGCAGTCCGGTCCACTGT+AGG 0.587668 1.4:-17098264 None:intergenic
ACATAATGCCTACAGTGGAC+CGG 0.591447 1.4:+17098256 MS.gene070698:CDS
TTATTTGAAGAGGTTAAGTG+TGG 0.592282 1.4:+17098068 MS.gene070698:CDS
CACAGTGAAGGAGGAACCAA+AGG 0.592585 1.4:+17099055 MS.gene070698:CDS
AAAGTATTCATGGCTAGCAA+TGG 0.600983 1.4:+17099029 MS.gene070698:CDS
GTCAGTGCTGTAAATCAACT+AGG 0.604605 1.4:+17096590 MS.gene070698:CDS
CTTGAAATGATGAATGTCCC+TGG 0.605781 1.4:+17096779 MS.gene070698:CDS
TCATGAAGGGAATTAGACAC+GGG 0.611444 1.4:+17096255 MS.gene070698:CDS
TAGTGTTGCTTCTGTCAACA+AGG 0.611545 1.4:+17098632 MS.gene070698:CDS
CAATGGTAACACAGTGAAGG+AGG 0.615665 1.4:+17099046 MS.gene070698:CDS
GGATGTTAAACACAGTTCAT+GGG 0.616102 1.4:+17098109 MS.gene070698:CDS
TTTGGATATCTGATATGACT+CGG 0.618478 1.4:-17099083 None:intergenic
AGTGAAGGAGGAACCAAAGG+AGG 0.619127 1.4:+17099058 MS.gene070698:CDS
AACACTTGCAGCTCTTCAGG+CGG 0.620247 1.4:+17098209 MS.gene070698:CDS
AGGACAAGTACTGTCATGAA+GGG 0.622788 1.4:+17096242 MS.gene070698:CDS
GACGATGTCGAAAGGGCTGT+AGG 0.623972 1.4:-17098337 None:intergenic
GCACTTGAATGATCATGAGA+TGG 0.624506 1.4:-17099134 None:intergenic
GTCATGAAGGGAATTAGACA+CGG 0.627814 1.4:+17096254 MS.gene070698:CDS
CAAGTGTTTCAGGGGAAACG+TGG 0.629851 1.4:-17098194 None:intergenic
CTAAGAAGCCTCGTGTAGTG+TGG 0.636384 1.4:+17096543 MS.gene070698:CDS
AAGGGGAGAAGGCTAGGCAA+TGG 0.637218 1.4:-17098858 None:intergenic
AAGAGCTGCAAGTGTTTCAG+GGG 0.639399 1.4:-17098202 None:intergenic
TAGCAATGGTAACACAGTGA+AGG 0.641107 1.4:+17099043 MS.gene070698:CDS
TGGGACTATAGAATCCAAGC+TGG 0.648856 1.4:+17098128 MS.gene070698:CDS
GAACTTGTCTAAGTGTCAAG+GGG 0.665309 1.4:-17098875 None:intergenic
TCTACTGACCACACTACACG+AGG 0.699174 1.4:-17096551 None:intergenic
GATAATTCTGTAGAACTGGG+TGG 0.703628 1.4:-17099112 None:intergenic
AACTAACATAATGCCTACAG+TGG 0.706212 1.4:+17098251 MS.gene070698:CDS
GATAATGATCGCAATCCACG+GGG 0.708274 1.4:+17096395 MS.gene070698:CDS
TAATGCATGCATCTGTACAG+GGG 0.713759 1.4:+17098286 MS.gene070698:CDS
ATGGATAATTCTGTAGAACT+GGG 0.722325 1.4:-17099115 None:intergenic
CATGAAGGGAATTAGACACG+GGG 0.726759 1.4:+17096256 MS.gene070698:CDS
AGTTCATCTCAATATCCTGG+CGG 0.732197 1.4:+17098723 MS.gene070698:CDS
ATAATGATCGCAATCCACGG+GGG 0.794645 1.4:+17096396 MS.gene070698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGTATTTAAATTAGTAT+AGG - chr1.4:17097681-17097700 None:intergenic 15.0%
!! AATAGAAAGAAAAAAAAAGT+TGG - chr1.4:17096634-17096653 None:intergenic 15.0%
!! AATTAGATGTTAAGATTAAA+AGG + chr1.4:17097831-17097850 MS.gene070698:intron 15.0%
!! TTTATTAAATGCTAGATATA+CGG + chr1.4:17097007-17097026 MS.gene070698:intron 15.0%
!!! GAAAATTTTGAATGAAAATA+AGG + chr1.4:17096346-17096365 MS.gene070698:CDS 15.0%
!!! TATTTTGGGTTTTAAATATT+AGG + chr1.4:17097533-17097552 MS.gene070698:intron 15.0%
!! AACTTGAATCAAATCAATAA+CGG - chr1.4:17097656-17097675 None:intergenic 20.0%
!! CAAAGTTGTTATGAAATAAA+AGG + chr1.4:17097405-17097424 MS.gene070698:intron 20.0%
!! TAGTAAAAGAACAAAAAAAG+AGG + chr1.4:17096468-17096487 MS.gene070698:CDS 20.0%
!! TCTAGCATTTAATAAAAGAA+AGG - chr1.4:17097003-17097022 None:intergenic 20.0%
!! TGATTGACTATAATCAATAA+TGG - chr1.4:17098679-17098698 None:intergenic 20.0%
!!! AATTTAGACTTTATTTGAAG+AGG + chr1.4:17098058-17098077 MS.gene070698:CDS 20.0%
!!! ATTATTTTATTAAGCCTGTA+CGG + chr1.4:17096285-17096304 MS.gene070698:CDS 20.0%
!!! TATATATGTATGTTTTCGAA+CGG + chr1.4:17097905-17097924 MS.gene070698:intron 20.0%
!!! TATGTGCTATTTTTCATATT+TGG + chr1.4:17096966-17096985 MS.gene070698:intron 20.0%
!!! TCATGAAAATAGATTCTTTT+TGG - chr1.4:17097302-17097321 None:intergenic 20.0%
!!! TCTTTTTATTATTCCCATTT+TGG + chr1.4:17097465-17097484 MS.gene070698:intron 20.0%
!!! TGGATTTTATTTTCAAAACT+TGG - chr1.4:17098981-17099000 None:intergenic 20.0%
! AAATATACGACATTGGTAAA+GGG + chr1.4:17097703-17097722 MS.gene070698:intron 25.0%
! AAGAAGAAGAAAAAGACTAA+AGG - chr1.4:17096929-17096948 None:intergenic 25.0%
! AATAAGGAACATGATAATTC+TGG + chr1.4:17096362-17096381 MS.gene070698:CDS 25.0%
! ATTAAAAGGACAAAGATATG+TGG + chr1.4:17097845-17097864 MS.gene070698:intron 25.0%
! ATTCAACAATTGGAACAAAA+AGG - chr1.4:17097073-17097092 None:intergenic 25.0%
! CAAAACTCAACTTTAACATT+TGG + chr1.4:17098825-17098844 MS.gene070698:CDS 25.0%
! CTGTTATAAATATACGACAT+TGG + chr1.4:17097696-17097715 MS.gene070698:intron 25.0%
! TAAAATCATTTGCAGATGAT+TGG - chr1.4:17099001-17099020 None:intergenic 25.0%
! TAAATATACGACATTGGTAA+AGG + chr1.4:17097702-17097721 MS.gene070698:intron 25.0%
! TGTACATCAAATAATGAAGA+TGG - chr1.4:17096886-17096905 None:intergenic 25.0%
! TTAACATTACCATTGTGAAT+TGG + chr1.4:17098031-17098050 MS.gene070698:intron 25.0%
! TTTAGATGAGAATCTCTATT+GGG + chr1.4:17097586-17097605 MS.gene070698:intron 25.0%
!! ACTTTCTGTAATGATTTTTC+AGG - chr1.4:17097628-17097647 None:intergenic 25.0%
!! ATATATGTATGTTTTCGAAC+GGG + chr1.4:17097906-17097925 MS.gene070698:intron 25.0%
!! ATCATTTCAAGTATTCTCTT+TGG - chr1.4:17096770-17096789 None:intergenic 25.0%
!! TTGTTATTCTTGTATTTCAG+AGG + chr1.4:17096739-17096758 MS.gene070698:intron 25.0%
!! TTTATTATTCCCATTTTGGA+GGG + chr1.4:17097469-17097488 MS.gene070698:intron 25.0%
!! TTTTATTATTCCCATTTTGG+AGG + chr1.4:17097468-17097487 MS.gene070698:intron 25.0%
!!! CTGCTGAATATTGTTATTTA+TGG - chr1.4:17098802-17098821 None:intergenic 25.0%
!!! TAGTCAAATGAAAGTATTCA+TGG + chr1.4:17099019-17099038 MS.gene070698:CDS 25.0%
AAAAGATGAAGATGTTGAGT+TGG + chr1.4:17096499-17096518 MS.gene070698:CDS 30.0%
AAATTATTGACGATGTCGAA+AGG - chr1.4:17098348-17098367 None:intergenic 30.0%
AAATTTCTGCCAATTCACAA+TGG - chr1.4:17098043-17098062 None:intergenic 30.0%
AATAATGAAGATGGTTCTCA+AGG - chr1.4:17096877-17096896 None:intergenic 30.0%
AATCACATCAATCTGTTGTT+AGG + chr1.4:17097146-17097165 MS.gene070698:intron 30.0%
AATTATTGACGATGTCGAAA+GGG - chr1.4:17098347-17098366 None:intergenic 30.0%
ACTGAAAAAGAGGATATTTG+AGG - chr1.4:17098774-17098793 None:intergenic 30.0%
ATAAAAGAAAGGTAACCTGA+AGG - chr1.4:17096992-17097011 None:intergenic 30.0%
ATAGAGATTCTCATCTAAAC+TGG - chr1.4:17097585-17097604 None:intergenic 30.0%
ATGGATAATTCTGTAGAACT+GGG - chr1.4:17099118-17099137 None:intergenic 30.0%
CTTAGAAATCTTGGATTTGT+TGG + chr1.4:17098939-17098958 MS.gene070698:CDS 30.0%
GAAGTATGTCTTAGAAATCT+TGG + chr1.4:17098930-17098949 MS.gene070698:CDS 30.0%
GTTTAGATGAGAATCTCTAT+TGG + chr1.4:17097585-17097604 MS.gene070698:intron 30.0%
TAAGCAATGACTTCACAAAT+TGG - chr1.4:17096847-17096866 None:intergenic 30.0%
TCGCTGGATTTAATATCATA+TGG - chr1.4:17098900-17098919 None:intergenic 30.0%
TGGAAGAACTAAGGAATATA+TGG + chr1.4:17096309-17096328 MS.gene070698:CDS 30.0%
TTATTTGAAGAGGTTAAGTG+TGG + chr1.4:17098068-17098087 MS.gene070698:CDS 30.0%
TTCCAATTGTTGAATGTTCT+GGG + chr1.4:17097078-17097097 MS.gene070698:intron 30.0%
TTTGGATATCTGATATGACT+CGG - chr1.4:17099086-17099105 None:intergenic 30.0%
! TGATTTTTACCAGTCAAATC+AGG - chr1.4:17097131-17097150 None:intergenic 30.0%
! TTTTGGTGAATATCCTATCA+AGG - chr1.4:17097285-17097304 None:intergenic 30.0%
!! AATCTTGGATTTGTTGGAAA+AGG + chr1.4:17098945-17098964 MS.gene070698:CDS 30.0%
!! ATTTTTCATATTTGGCCTTC+AGG + chr1.4:17096974-17096993 MS.gene070698:intron 30.0%
!! TGACTCATCTACTTTTAAGA+TGG - chr1.4:17098379-17098398 None:intergenic 30.0%
!! TTATTATTCCCATTTTGGAG+GGG + chr1.4:17097470-17097489 MS.gene070698:intron 30.0%
!! TTTGCTTTTGCATTCAATGA+CGG + chr1.4:17096657-17096676 MS.gene070698:intron 30.0%
!!! CAAATATCCTCTTTTTCAGT+AGG + chr1.4:17098774-17098793 MS.gene070698:CDS 30.0%
!!! TTTCATGGTGGTGTTATTTT+GGG + chr1.4:17097519-17097538 MS.gene070698:intron 30.0%
AAATGTTGCAAGTCATTTGC+AGG + chr1.4:17096814-17096833 MS.gene070698:CDS 35.0%
AACGTATGAAATTCCCATCA+AGG - chr1.4:17097043-17097062 None:intergenic 35.0%
AACTAACATAATGCCTACAG+TGG + chr1.4:17098251-17098270 MS.gene070698:CDS 35.0%
AAGATAATGATCGCAATCCA+CGG + chr1.4:17096393-17096412 MS.gene070698:CDS 35.0%
AAGATATGACATACAGGCTT+TGG + chr1.4:17098161-17098180 MS.gene070698:CDS 35.0%
AGACTAGTGATGTATGAGAA+AGG + chr1.4:17097740-17097759 MS.gene070698:intron 35.0%
AGAGGATATTTGAGGAGAAA+TGG - chr1.4:17098766-17098785 None:intergenic 35.0%
AGTGATGTATGAGAAAGGTT+AGG + chr1.4:17097745-17097764 MS.gene070698:intron 35.0%
ATATATTGCAGCACCAACAA+CGG + chr1.4:17098490-17098509 MS.gene070698:intron 35.0%
CTTTACAAGAGTTACTAAGG+TGG - chr1.4:17097211-17097230 None:intergenic 35.0%
GACAAGTTCTTTCTATCACT+TGG - chr1.4:17097794-17097813 None:intergenic 35.0%
GATGAGTCATCATCAGTATA+TGG + chr1.4:17098390-17098409 MS.gene070698:intron 35.0%
GATGGATAATTCTGTAGAAC+TGG - chr1.4:17099119-17099138 None:intergenic 35.0%
GCTCTTTACAAGAGTTACTA+AGG - chr1.4:17097214-17097233 None:intergenic 35.0%
GGATGTTAAACACAGTTCAT+GGG + chr1.4:17098109-17098128 MS.gene070698:CDS 35.0%
GGGTTAAAACTAAAGCTGTT+GGG + chr1.4:17097495-17097514 MS.gene070698:intron 35.0%
GGTTAAAACTAAAGCTGTTG+GGG + chr1.4:17097496-17097515 MS.gene070698:intron 35.0%
GTTCCAATTGTTGAATGTTC+TGG + chr1.4:17097077-17097096 MS.gene070698:intron 35.0%
TACCCAGAACATTCAACAAT+TGG - chr1.4:17097083-17097102 None:intergenic 35.0%
TACTGGAAGATATGACATAC+AGG + chr1.4:17098155-17098174 MS.gene070698:CDS 35.0%
TATGGATCCTACTGAAAAAG+AGG - chr1.4:17098784-17098803 None:intergenic 35.0%
TCAAAACTATCAGTGCAACA+TGG + chr1.4:17097239-17097258 MS.gene070698:intron 35.0%
TCAATCTTCTAATACCTTCC+AGG + chr1.4:17098602-17098621 MS.gene070698:intron 35.0%
TTCAAGTATTCTCTTTGGCA+CGG - chr1.4:17096765-17096784 None:intergenic 35.0%
! AAAGTATTCATGGCTAGCAA+TGG + chr1.4:17099029-17099048 MS.gene070698:CDS 35.0%
! AAGGTATTAGAAGATTGAGC+AGG - chr1.4:17098600-17098619 None:intergenic 35.0%
! ACATTTTCTCTTGTTAGACC+AGG - chr1.4:17096800-17096819 None:intergenic 35.0%
! ATGTTTTGTATGTCACAGAG+AGG + chr1.4:17097371-17097390 MS.gene070698:intron 35.0%
! CATTTTCTCTTGTTAGACCA+GGG - chr1.4:17096799-17096818 None:intergenic 35.0%
! TGTTTTGTAGTGCTTTACTG+TGG + chr1.4:17098008-17098027 MS.gene070698:intron 35.0%
! TGTTTTGTATGTCACAGAGA+GGG + chr1.4:17097372-17097391 MS.gene070698:intron 35.0%
! TTTTATTAAGCCTGTACGGA+TGG + chr1.4:17096289-17096308 MS.gene070698:CDS 35.0%
!! TATTATTCCCATTTTGGAGG+GGG + chr1.4:17097471-17097490 MS.gene070698:intron 35.0%
!!! CTACTTTTAAGATGGACTGA+GGG - chr1.4:17098371-17098390 None:intergenic 35.0%
!!! GTTTCATGGTGGTGTTATTT+TGG + chr1.4:17097518-17097537 MS.gene070698:intron 35.0%
!!! TCTACTTTTAAGATGGACTG+AGG - chr1.4:17098372-17098391 None:intergenic 35.0%
AAATGAACACTGCGTAGACT+TGG + chr1.4:17097104-17097123 MS.gene070698:intron 40.0%
AACACTATTTACTGCCTGGA+AGG - chr1.4:17098619-17098638 None:intergenic 40.0%
AAGCAACACTATTTACTGCC+TGG - chr1.4:17098623-17098642 None:intergenic 40.0%
AATGAACACTGCGTAGACTT+GGG + chr1.4:17097105-17097124 MS.gene070698:intron 40.0%
ACTAATGCATGCATCTGTAC+AGG + chr1.4:17098284-17098303 MS.gene070698:CDS 40.0%
AGAATCTCTATTGGGTCATG+CGG + chr1.4:17097594-17097613 MS.gene070698:intron 40.0%
AGATAATGATCGCAATCCAC+GGG + chr1.4:17096394-17096413 MS.gene070698:CDS 40.0%
AGTTCATCTCAATATCCTGG+CGG + chr1.4:17098723-17098742 MS.gene070698:CDS 40.0%
ATATATGGCAGCATGTTGCT+AGG + chr1.4:17096324-17096343 MS.gene070698:CDS 40.0%
CAATGTTCAACCATCTTGCT+TGG + chr1.4:17098569-17098588 MS.gene070698:intron 40.0%
CATCATCAGTATATGGAGCA+TGG + chr1.4:17098397-17098416 MS.gene070698:intron 40.0%
CTAATGCATGCATCTGTACA+GGG + chr1.4:17098285-17098304 MS.gene070698:CDS 40.0%
CTTGAAATGATGAATGTCCC+TGG + chr1.4:17096779-17096798 MS.gene070698:CDS 40.0%
GAACTTGTCTAAGTGTCAAG+GGG - chr1.4:17098878-17098897 None:intergenic 40.0%
GATAATTCTGTAGAACTGGG+TGG - chr1.4:17099115-17099134 None:intergenic 40.0%
GCACTTGAATGATCATGAGA+TGG - chr1.4:17099137-17099156 None:intergenic 40.0%
GGAACTTGTCTAAGTGTCAA+GGG - chr1.4:17098879-17098898 None:intergenic 40.0%
GGATATTTGAGGAGAAATGG+AGG - chr1.4:17098763-17098782 None:intergenic 40.0%
GGGATGTTAAACACAGTTCA+TGG + chr1.4:17098108-17098127 MS.gene070698:CDS 40.0%
GGGGTTAAAACTAAAGCTGT+TGG + chr1.4:17097494-17097513 MS.gene070698:intron 40.0%
GTAGGCATTATGTTAGTTGC+CGG - chr1.4:17098249-17098268 None:intergenic 40.0%
GTCAGTGCTGTAAATCAACT+AGG + chr1.4:17096590-17096609 MS.gene070698:CDS 40.0%
GTCATGAAGGGAATTAGACA+CGG + chr1.4:17096254-17096273 MS.gene070698:CDS 40.0%
TAATGCATGCATCTGTACAG+GGG + chr1.4:17098286-17098305 MS.gene070698:CDS 40.0%
TACTTCATCAAGTGAATCGC+TGG - chr1.4:17098916-17098935 None:intergenic 40.0%
TAGCAATGGTAACACAGTGA+AGG + chr1.4:17099043-17099062 MS.gene070698:CDS 40.0%
TAGGCATTATGTTAGTTGCC+GGG - chr1.4:17098248-17098267 None:intergenic 40.0%
TCAATCTCAAGTGGAAGGTT+AGG + chr1.4:17098441-17098460 MS.gene070698:intron 40.0%
TCATGAAGGGAATTAGACAC+GGG + chr1.4:17096255-17096274 MS.gene070698:CDS 40.0%
TCGAGTTCATCTCAATATCC+TGG + chr1.4:17098720-17098739 MS.gene070698:CDS 40.0%
TGGAACTTGTCTAAGTGTCA+AGG - chr1.4:17098880-17098899 None:intergenic 40.0%
TTTGAAGAGGTTAAGTGTGG+TGG + chr1.4:17098071-17098090 MS.gene070698:CDS 40.0%
! ACGGTTTTCTACTACCTTGA+TGG + chr1.4:17097026-17097045 MS.gene070698:intron 40.0%
! AGGACAAGTACTGTCATGAA+GGG + chr1.4:17096242-17096261 MS.gene070698:CDS 40.0%
! CGGTTTTCTACTACCTTGAT+GGG + chr1.4:17097027-17097046 MS.gene070698:intron 40.0%
! GTCAACAAGGATAGCAGTTT+TGG + chr1.4:17098645-17098664 MS.gene070698:CDS 40.0%
! GTGTTTTGTCACTCCTTGAT+AGG + chr1.4:17097269-17097288 MS.gene070698:intron 40.0%
! TACATCACTAGTCTCATTCC+AGG - chr1.4:17097734-17097753 None:intergenic 40.0%
! TAGGACAAGTACTGTCATGA+AGG + chr1.4:17096241-17096260 MS.gene070698:CDS 40.0%
! TTCAATGACGGAGACTTCTT+TGG + chr1.4:17096669-17096688 MS.gene070698:intron 40.0%
!! ATTATTCCCATTTTGGAGGG+GGG + chr1.4:17097472-17097491 MS.gene070698:intron 40.0%
!! TAGTGTTGCTTCTGTCAACA+AGG + chr1.4:17098632-17098651 MS.gene070698:CDS 40.0%
!!! TGCACTGATAGTTTTGACAC+AGG - chr1.4:17097236-17097255 None:intergenic 40.0%
AAGAGCTGCAAGTGTTTCAG+GGG - chr1.4:17098205-17098224 None:intergenic 45.0%
AAGGTGGTAGCATGGATGAT+AGG - chr1.4:17097195-17097214 None:intergenic 45.0%
ACATAATGCCTACAGTGGAC+CGG + chr1.4:17098256-17098275 MS.gene070698:CDS 45.0%
ATAATGATCGCAATCCACGG+GGG + chr1.4:17096396-17096415 MS.gene070698:CDS 45.0%
ATGCATGCATTAGTGCAGTC+CGG - chr1.4:17098278-17098297 None:intergenic 45.0%
ATTGACCCGAGTGTACTAGA+CGG - chr1.4:17098426-17098445 None:intergenic 45.0%
CAATGGTAACACAGTGAAGG+AGG + chr1.4:17099046-17099065 MS.gene070698:CDS 45.0%
CATGAAGGGAATTAGACACG+GGG + chr1.4:17096256-17096275 MS.gene070698:CDS 45.0%
CGAGGCTTCTTAGATGTAGA+TGG - chr1.4:17096536-17096555 None:intergenic 45.0%
CGTGCAGAATAGTAACACAC+TGG + chr1.4:17098464-17098483 MS.gene070698:intron 45.0%
CTAAAGCTGTTGGGGTTTCA+TGG + chr1.4:17097504-17097523 MS.gene070698:intron 45.0%
CTGTACGGATGGAAGAACTA+AGG + chr1.4:17096300-17096319 MS.gene070698:CDS 45.0%
GAAGAGCTGCAAGTGTTTCA+GGG - chr1.4:17098206-17098225 None:intergenic 45.0%
GACAACACTTCTTCTGTTGC+TGG + chr1.4:17096431-17096450 MS.gene070698:CDS 45.0%
GAGTTACTAAGGTGGTAGCA+TGG - chr1.4:17097203-17097222 None:intergenic 45.0%
GATAATGATCGCAATCCACG+GGG + chr1.4:17096395-17096414 MS.gene070698:CDS 45.0%
TCATTATCATCATTCCCCCG+TGG - chr1.4:17096413-17096432 None:intergenic 45.0%
TCTGTTGCTGGTGCAACAAA+AGG + chr1.4:17096443-17096462 MS.gene070698:CDS 45.0%
TGAAACACTTGCAGCTCTTC+AGG + chr1.4:17098206-17098225 MS.gene070698:CDS 45.0%
TGAAGAGCTGCAAGTGTTTC+AGG - chr1.4:17098207-17098226 None:intergenic 45.0%
TGGGACTATAGAATCCAAGC+TGG + chr1.4:17098128-17098147 MS.gene070698:CDS 45.0%
TGTTCAACCATCTTGCTTGG+TGG + chr1.4:17098572-17098591 MS.gene070698:intron 45.0%
! CTTAGTTCTTCCATCCGTAC+AGG - chr1.4:17096302-17096321 None:intergenic 45.0%
! TATGACATACAGGCTTTGGC+TGG + chr1.4:17098165-17098184 MS.gene070698:CDS 45.0%
!! ATATGACTCGGTTCCTCCTT+TGG - chr1.4:17099074-17099093 None:intergenic 45.0%
!! CATTGGTAAAGGGAGTATCC+TGG + chr1.4:17097713-17097732 MS.gene070698:intron 45.0%
!! TTATTCCCATTTTGGAGGGG+GGG + chr1.4:17097473-17097492 MS.gene070698:intron 45.0%
!!! GCTGTTGTTTTTGCTGATGC+TGG - chr1.4:17098518-17098537 None:intergenic 45.0%
AACACTTGCAGCTCTTCAGG+CGG + chr1.4:17098209-17098228 MS.gene070698:CDS 50.0%
AAGCTGTTGGGGTTTCATGG+TGG + chr1.4:17097507-17097526 MS.gene070698:intron 50.0%
ACACTCGGGTCAATCTCAAG+TGG + chr1.4:17098432-17098451 MS.gene070698:intron 50.0%
AGTGAAGGAGGAACCAAAGG+AGG + chr1.4:17099058-17099077 MS.gene070698:CDS 50.0%
CAAGTGTTTCAGGGGAAACG+TGG - chr1.4:17098197-17098216 None:intergenic 50.0%
CACAGTGAAGGAGGAACCAA+AGG + chr1.4:17099055-17099074 MS.gene070698:CDS 50.0%
CTAAGAAGCCTCGTGTAGTG+TGG + chr1.4:17096543-17096562 MS.gene070698:CDS 50.0%
GTCTAAGTGTCAAGGGGAGA+AGG - chr1.4:17098872-17098891 None:intergenic 50.0%
TCGGGTCAATCTCAAGTGGA+AGG + chr1.4:17098436-17098455 MS.gene070698:intron 50.0%
TCTACTGACCACACTACACG+AGG - chr1.4:17096554-17096573 None:intergenic 50.0%
TCTCTATTGGGTCATGCGGA+AGG + chr1.4:17097598-17097617 MS.gene070698:intron 50.0%
! AGACTTGGGCCTGATTTGAC+TGG + chr1.4:17097119-17097138 MS.gene070698:intron 50.0%
! ATACAGGCTTTGGCTGGTTC+TGG + chr1.4:17098171-17098190 MS.gene070698:CDS 50.0%
! TGGTGGCGCATCAACAGAAT+GGG + chr1.4:17098088-17098107 MS.gene070698:CDS 50.0%
!! TATTCCCATTTTGGAGGGGG+GGG + chr1.4:17097474-17097493 MS.gene070698:intron 50.0%
AAGGGGAGAAGGCTAGGCAA+TGG - chr1.4:17098861-17098880 None:intergenic 55.0%
AGAACTGGGTGGCTCGCATT+TGG - chr1.4:17099104-17099123 None:intergenic 55.0%
AGTGTCAAGGGGAGAAGGCT+AGG - chr1.4:17098867-17098886 None:intergenic 55.0%
GAATCCAAGCTGGCTGCTAC+TGG + chr1.4:17098138-17098157 MS.gene070698:CDS 55.0%
GACGATGTCGAAAGGGCTGT+AGG - chr1.4:17098340-17098359 None:intergenic 55.0%
GCAGGAACCACCAAGCAAGA+TGG - chr1.4:17098582-17098601 None:intergenic 55.0%
TAACCCCCCCCCTCCAAAAT+GGG - chr1.4:17097481-17097500 None:intergenic 55.0%
TCTTCCAGTAGCAGCCAGCT+TGG - chr1.4:17098145-17098164 None:intergenic 55.0%
TTAACCCCCCCCCTCCAAAA+TGG - chr1.4:17097482-17097501 None:intergenic 55.0%
! GTGGTGGCGCATCAACAGAA+TGG + chr1.4:17098087-17098106 MS.gene070698:CDS 55.0%
!! ATTCCCATTTTGGAGGGGGG+GGG + chr1.4:17097475-17097494 MS.gene070698:intron 55.0%
AGTGCAGTCCGGTCCACTGT+AGG - chr1.4:17098267-17098286 None:intergenic 60.0%
GACCCGAGTGTACTAGACGG+CGG - chr1.4:17098423-17098442 None:intergenic 60.0%
GCTCTTCAGGCGGAGCTCTT+AGG + chr1.4:17098219-17098238 MS.gene070698:CDS 60.0%
GTAGCTCTTGTGTCTCCGCC+AGG - chr1.4:17098741-17098760 None:intergenic 60.0%
TGGCCGCCGTCTAGTACACT+CGG + chr1.4:17098417-17098436 MS.gene070698:intron 60.0%
!! GCTGATGCTGGTGCCGTTGT+TGG - chr1.4:17098506-17098525 None:intergenic 60.0%
GGCCGCCGTCTAGTACACTC+GGG + chr1.4:17098418-17098437 MS.gene070698:intron 65.0%
GGCGGAGCTCTTAGGTCACC+CGG + chr1.4:17098227-17098246 MS.gene070698:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 17096227 17099166 17096227 ID=MS.gene070698
chr1.4 mRNA 17096227 17099166 17096227 ID=MS.gene070698.t1;Parent=MS.gene070698
chr1.4 exon 17096227 17096620 17096227 ID=MS.gene070698.t1.exon1;Parent=MS.gene070698.t1
chr1.4 CDS 17096227 17096620 17096227 ID=cds.MS.gene070698.t1;Parent=MS.gene070698.t1
chr1.4 exon 17096759 17096835 17096759 ID=MS.gene070698.t1.exon2;Parent=MS.gene070698.t1
chr1.4 CDS 17096759 17096835 17096759 ID=cds.MS.gene070698.t1;Parent=MS.gene070698.t1
chr1.4 exon 17098057 17098356 17098057 ID=MS.gene070698.t1.exon3;Parent=MS.gene070698.t1
chr1.4 CDS 17098057 17098356 17098057 ID=cds.MS.gene070698.t1;Parent=MS.gene070698.t1
chr1.4 exon 17098624 17099166 17098624 ID=MS.gene070698.t1.exon4;Parent=MS.gene070698.t1
chr1.4 CDS 17098624 17099166 17098624 ID=cds.MS.gene070698.t1;Parent=MS.gene070698.t1
Gene Sequence

>MS.gene070698

ATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTTATTAAGCCTGTACGGATGGAAGAACTAAGGAATATATGGCAGCATGTTGCTAGGAAAATTTTGAATGAAAATAAGGAACATGATAATTCTGGCAGCATAGAAGATAATGATCGCAATCCACGGGGGAATGATGATAATGACAACACTTCTTCTGTTGCTGGTGCAACAAAAGGAATAGTAAAAGAACAAAAAAAGAGGAGCAATTTAAAAGATGAAGATGTTGAGTTGGAGAATGACGATCCATCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTAAATCAACTAGGACTTGACAGTAAGAATTTCCAACTTTTTTTTTCTTTCTATTTCTTTTGCTTTTGCATTCAATGACGGAGACTTCTTTGGATTTAATAAGCATAAAGCGTTTTAAGAATTTATTGCTTATCATTTATTTGTTATTCTTGTATTTCAGAGGCCGTGCCAAAGAGAATACTTGAAATGATGAATGTCCCTGGTCTAACAAGAGAAAATGTTGCAAGTCATTTGCAGGTATTAGTCCAATTTGTGAAGTCATTGCTTACAATCTTCCTTGAGAACCATCTTCATTATTTGATGTACAATAGTTGAACTTGTAACTGACCTTTAGTCTTTTTCTTCTTCTTCAATTTTCATATCTTATTATGTGCTATTTTTCATATTTGGCCTTCAGGTTACCTTTCTTTTATTAAATGCTAGATATACGGTTTTCTACTACCTTGATGGGAATTTCATACGTTGTCTTGACCTTTTTGTTCCAATTGTTGAATGTTCTGGGTATAAATGAACACTGCGTAGACTTGGGCCTGATTTGACTGGTAAAAATCACATCAATCTGTTGTTAGGCTAGTTTTTGTATCTGTTTATATCCTATCATCCATGCTACCACCTTAGTAACTCTTGTAAAGAGCCTGTGTCAAAACTATCAGTGCAACATGGAGTTGCTGTGTTTTGTCACTCCTTGATAGGATATTCACCAAAAAGAATCTATTTTCATGATTAGTTGTTCGTAATATTGATGTGTCAACAAGAGTAGATGTATCTATGAATGTTTTGTATGTCACAGAGAGGGTCTACAAGTTCAAAGTTGTTATGAAATAAAAGGCAATGAGCATTGATGAAAATGAAGAAGTTTAATTGTATCTTTTTATTATTCCCATTTTGGAGGGGGGGGGTTAAAACTAAAGCTGTTGGGGTTTCATGGTGGTGTTATTTTGGGTTTTAAATATTAGGAAGAAATAATATGTTGAAAATTGATTCCAGTTTAGATGAGAATCTCTATTGGGTCATGCGGAAGGACAGCCTGAAAAATCATTACAGAAAGTTAATACCGTTATTGATTTGATTCAAGTTGTCCTATACTAATTTAAATACTGTTATAAATATACGACATTGGTAAAGGGAGTATCCTGGAATGAGACTAGTGATGTATGAGAAAGGTTAGGTTGATCAAGAATAATGACATGAACCAAGTGATAGAAAGAACTTGTCACTTTCTTATTAAAAATAATTAGATGTTAAGATTAAAAGGACAAAGATATGTGGTAATGAATATAGTCTGTTATTTAGTGATATATGTCGTTATATATGTATGTTTTCGAACGGGTGAGAAATATTATCTGCTCATATTCAAGTTTTTGATATTTTTGCAAACTGAGTCACTAGATTGTAGATAAATGAAATTGTGTTTTGTAGTGCTTTACTGTGGTTAACATTACCATTGTGAATTGGCAGAAATTTAGACTTTATTTGAAGAGGTTAAGTGTGGTGGCGCATCAACAGAATGGGATGTTAAACACAGTTCATGGGACTATAGAATCCAAGCTGGCTGCTACTGGAAGATATGACATACAGGCTTTGGCTGGTTCTGGCCACGTTTCCCCTGAAACACTTGCAGCTCTTCAGGCGGAGCTCTTAGGTCACCCGGCAACTAACATAATGCCTACAGTGGACCGGACTGCACTAATGCATGCATCTGTACAGGGGACAAAACATTCTCGTGCTGATGATCATGCCTACAGCCCTTTCGACATCGTCAATAATTTCCCTCAGTCCATCTTAAAAGTAGATGAGTCATCATCAGTATATGGAGCATGGCCGCCGTCTAGTACACTCGGGTCAATCTCAAGTGGAAGGTTAGGCGTGCAGAATAGTAACACACTGGTTGATATATTGCAGCACCAACAACGGCACCAGCATCAGCAAAAACAACAGCAGTCTCAGATGCATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCTGCTCAATCTTCTAATACCTTCCAGGCAGTAAATAGTGTTGCTTCTGTCAACAAGGATAGCAGTTTTGGCAGAAATGCCATTATTGATTATAGTCAATCATCACAAAAATCAAATACTTCATCGAGTTCATCTCAATATCCTGGCGGAGACACAAGAGCTACCTCCATTTCTCCTCAAATATCCTCTTTTTCAGTAGGATCCATAAATAACAATATTCAGCAGATTCAAAACTCAACTTTAACATTTGGTGCTGCTAGACCATTGCCTAGCCTTCTCCCCTTGACACTTAGACAAGTTCCATATGATATTAAATCCAGCGATTCACTTGATGAAGTATGTCTTAGAAATCTTGGATTTGTTGGAAAAGGTAACTGCATACCAAGTTTTGAAAATAAAATCCAATCATCTGCAAATGATTTTAGTCAAATGAAAGTATTCATGGCTAGCAATGGTAACACAGTGAAGGAGGAACCAAAGGAGGAACCGAGTCATATCAGATATCCAAATGCGAGCCACCCAGTTCTACAGAATTATCCATCTCATGATCATTCAAGTGCATTCACTTAA
Protein sequence

>MS.gene070698.t1

MSVDDRTSTVMKGIRHGACDYFIKPVRMEELRNIWQHVARKILNENKEHDNSGSIEDNDRNPRGNDDNDNTSSVAGATKGIVKEQKKRSNLKDEDVELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILEMMNVPGLTRENVASHLQKFRLYLKRLSVVAHQQNGMLNTVHGTIESKLAATGRYDIQALAGSGHVSPETLAALQAELLGHPATNIMPTVDRTALMHASVQGTKHSRADDHAYSPFDIAVNSVASVNKDSSFGRNAIIDYSQSSQKSNTSSSSSQYPGGDTRATSISPQISSFSVGSINNNIQQIQNSTLTFGAARPLPSLLPLTLRQVPYDIKSSDSLDEVCLRNLGFVGKGNCIPSFENKIQSSANDFSQMKVFMASNGNTVKEEPKEEPSHIRYPNASHPVLQNYPSHDHSSAFT