Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070701.t1 | XP_013466598.1 | 95.7 | 1121 | 48 | 0 | 1 | 1121 | 20 | 1140 | 0.00E+00 | 2165.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070701.t1 | Q9LQV2 | 53.3 | 1091 | 471 | 8 | 2 | 1080 | 21 | 1085 | 0.0e+00 | 1157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070701.t1 | A0A072VF26 | 95.7 | 1121 | 48 | 0 | 1 | 1121 | 20 | 1140 | 0.0e+00 | 2165.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene070701 | 0.828081 | 1.10E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene070701 | 0.82722 | 1.76E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene070701 | 0.80825 | 3.40E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene070701 | 0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene070701 | 0.80337 | 3.60E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene070701 | 0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene058668 | MS.gene070701 | 0.801396 | 9.18E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene070701 | 0.800168 | 1.64E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070701.t1 | MTR_1g032590 | 95.718 | 1121 | 48 | 0 | 1 | 1121 | 20 | 1140 | 0.0 | 2223 |
| MS.gene070701.t1 | MTR_1g032630 | 54.182 | 1100 | 467 | 11 | 3 | 1088 | 24 | 1100 | 0.0 | 1187 |
| MS.gene070701.t1 | MTR_1g032610 | 53.964 | 1110 | 459 | 11 | 2 | 1088 | 23 | 1103 | 0.0 | 1186 |
| MS.gene070701.t1 | MTR_1g032720 | 53.909 | 1100 | 469 | 9 | 3 | 1086 | 633 | 1710 | 0.0 | 1174 |
| MS.gene070701.t1 | MTR_1g032720 | 49.340 | 606 | 282 | 7 | 3 | 588 | 24 | 624 | 0.0 | 579 |
| MS.gene070701.t1 | MTR_1g032610 | 55.198 | 1058 | 425 | 10 | 51 | 1088 | 12 | 1040 | 0.0 | 1164 |
| MS.gene070701.t1 | MTR_1g032630 | 52.102 | 785 | 343 | 9 | 3 | 773 | 24 | 789 | 0.0 | 791 |
| MS.gene070701.t1 | MTR_4g106660 | 37.780 | 1117 | 642 | 16 | 1 | 1085 | 26 | 1121 | 0.0 | 748 |
| MS.gene070701.t1 | MTR_4g106660 | 37.804 | 1111 | 638 | 16 | 1 | 1079 | 26 | 1115 | 0.0 | 746 |
| MS.gene070701.t1 | MTR_4g106660 | 50.000 | 106 | 53 | 0 | 818 | 923 | 1113 | 1218 | 5.46e-24 | 110 |
| MS.gene070701.t1 | MTR_1g032710 | 58.707 | 557 | 210 | 3 | 535 | 1088 | 1 | 540 | 0.0 | 660 |
| MS.gene070701.t1 | MTR_3g107390 | 34.405 | 1151 | 633 | 27 | 29 | 1097 | 80 | 1190 | 0.0 | 580 |
| MS.gene070701.t1 | MTR_6g088660 | 23.007 | 552 | 315 | 21 | 450 | 917 | 303 | 828 | 2.04e-14 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070701.t1 | AT1G14790 | 53.054 | 1097 | 477 | 8 | 2 | 1086 | 21 | 1091 | 0.0 | 1189 |
| MS.gene070701.t1 | AT4G11130 | 39.929 | 1132 | 607 | 29 | 1 | 1091 | 27 | 1126 | 0.0 | 731 |
| MS.gene070701.t1 | AT3G49500 | 35.661 | 1074 | 588 | 28 | 76 | 1079 | 130 | 1170 | 3.62e-180 | 560 |
| MS.gene070701.t1 | AT3G49500 | 35.661 | 1074 | 588 | 28 | 76 | 1079 | 130 | 1170 | 3.62e-180 | 560 |
| MS.gene070701.t1 | AT3G49500 | 35.661 | 1074 | 588 | 28 | 76 | 1079 | 130 | 1170 | 3.62e-180 | 560 |
| MS.gene070701.t1 | AT3G49500 | 35.661 | 1074 | 588 | 28 | 76 | 1079 | 130 | 1170 | 3.62e-180 | 560 |
| MS.gene070701.t1 | AT3G49500 | 35.661 | 1074 | 588 | 28 | 76 | 1079 | 130 | 1170 | 3.62e-180 | 560 |
| MS.gene070701.t1 | AT2G19930 | 24.229 | 681 | 380 | 27 | 330 | 919 | 195 | 830 | 2.81e-25 | 114 |
| MS.gene070701.t1 | AT2G19930 | 24.229 | 681 | 380 | 27 | 330 | 919 | 201 | 836 | 3.05e-25 | 114 |
| MS.gene070701.t1 | AT2G19930 | 24.118 | 680 | 388 | 26 | 330 | 919 | 195 | 836 | 8.82e-25 | 112 |
| MS.gene070701.t1 | AT2G19920 | 22.895 | 677 | 379 | 26 | 333 | 917 | 222 | 847 | 7.61e-22 | 102 |
| MS.gene070701.t1 | AT2G19920 | 22.895 | 677 | 379 | 26 | 333 | 917 | 208 | 833 | 1.26e-21 | 102 |
| MS.gene070701.t1 | AT2G19920 | 22.895 | 677 | 379 | 26 | 333 | 917 | 208 | 833 | 1.33e-21 | 102 |
| MS.gene070701.t1 | AT2G19920 | 22.895 | 677 | 379 | 26 | 333 | 917 | 209 | 834 | 1.43e-21 | 102 |
| MS.gene070701.t1 | AT2G19910 | 25.702 | 463 | 262 | 17 | 510 | 917 | 403 | 838 | 9.24e-21 | 99.4 |
| MS.gene070701.t1 | AT2G19910 | 25.424 | 472 | 261 | 17 | 510 | 917 | 403 | 847 | 9.79e-20 | 96.3 |
Find 170 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACCACAGAAATATATTT+TGG | 0.177661 | 1.2:-17060845 | None:intergenic |
| GATCATGACATGAAGATTAA+TGG | 0.221198 | 1.2:+17063112 | MS.gene070701:CDS |
| TAACATATCATCCTAGTTAT+TGG | 0.223605 | 1.2:+17063428 | MS.gene070701:CDS |
| TATGTCCTCTATTTCTTCTA+AGG | 0.262191 | 1.2:+17061941 | MS.gene070701:CDS |
| AGTTCCATTTCTTTAGATAA+TGG | 0.289085 | 1.2:+17060787 | MS.gene070701:CDS |
| TACCAAGTTGATGAACTTAA+TGG | 0.295577 | 1.2:+17063183 | MS.gene070701:CDS |
| AACATATCATCCTAGTTATT+GGG | 0.296453 | 1.2:+17063429 | MS.gene070701:CDS |
| TAAAGCAACTAACCTGAAAA+AGG | 0.303754 | 1.2:-17060167 | None:intergenic |
| CTACAATGAGGGACTAAATA+AGG | 0.310910 | 1.2:+17063456 | MS.gene070701:CDS |
| TAAGGAATGAAGCTAGAAAT+TGG | 0.316555 | 1.2:+17063320 | MS.gene070701:CDS |
| CCACAGGTGATATAAGAAAA+TGG | 0.319961 | 1.2:+17061154 | MS.gene070701:CDS |
| GAACATTTCCACTGTAAGAT+AGG | 0.336252 | 1.2:-17059867 | None:intergenic |
| AGAGGAACCTGACAACAAAT+TGG | 0.351037 | 1.2:-17060971 | None:intergenic |
| TACTGTTTCTCTGATGGAAT+AGG | 0.353907 | 1.2:+17061324 | MS.gene070701:CDS |
| TATGGCAAGTTGAATCCTTC+TGG | 0.354659 | 1.2:-17060538 | None:intergenic |
| AGAGAAAACTTAGTGTACTT+TGG | 0.354703 | 1.2:+17059989 | MS.gene070701:CDS |
| TCAAGTGCTTCTGTTAAATT+CGG | 0.356052 | 1.2:+17060018 | MS.gene070701:CDS |
| GAACGATTACAGACATGTTA+AGG | 0.356086 | 1.2:+17061709 | MS.gene070701:CDS |
| GAACTTATAGAGTGAAAGAT+TGG | 0.356388 | 1.2:+17063551 | MS.gene070701:CDS |
| CGTTCATCCAATTTGTTGTC+AGG | 0.359426 | 1.2:+17060964 | MS.gene070701:CDS |
| GCTTACAACATGGATGGTAT+TGG | 0.360043 | 1.2:+17059940 | MS.gene070701:CDS |
| TCAAGGATCGAGTCTTTAAA+AGG | 0.361407 | 1.2:+17061610 | MS.gene070701:CDS |
| GAGAAAACTTAGTGTACTTT+GGG | 0.363652 | 1.2:+17059990 | MS.gene070701:CDS |
| CTCAAAATCCTTACATCTCC+TGG | 0.368528 | 1.2:-17062035 | None:intergenic |
| AGGAAGCTTATGACAATCAT+TGG | 0.375647 | 1.2:+17060320 | MS.gene070701:CDS |
| TATCAATCAAACAGCATAAT+CGG | 0.377820 | 1.2:+17063004 | MS.gene070701:CDS |
| AGGGAAAATATCATATGAAT+TGG | 0.379623 | 1.2:+17061344 | MS.gene070701:CDS |
| CAATCCATTATCTAAAGAAA+TGG | 0.380201 | 1.2:-17060791 | None:intergenic |
| CACTCTATAAGTTCTACTCT+TGG | 0.380382 | 1.2:-17063542 | None:intergenic |
| TGGATGTTTGCACCGAGAAC+TGG | 0.381059 | 1.2:+17061126 | MS.gene070701:CDS |
| GAAAGTTTAGTTGATGAGTT+AGG | 0.381385 | 1.2:-17061465 | None:intergenic |
| AAAAGGAAAATATATTGTTA+AGG | 0.383734 | 1.2:+17061977 | MS.gene070701:CDS |
| TCACTTCCTGAACATTCATT+AGG | 0.385378 | 1.2:-17062440 | None:intergenic |
| ATGCTGTTTGATTGATAAGT+TGG | 0.385994 | 1.2:-17062998 | None:intergenic |
| AGGAAGTTATCGGTGTCTTC+AGG | 0.387986 | 1.2:-17060904 | None:intergenic |
| ACACACTGTGTTTGCTGATA+AGG | 0.389362 | 1.2:+17062826 | MS.gene070701:CDS |
| TCTCTACAGCAAGAACAGTT+TGG | 0.392593 | 1.2:-17059747 | None:intergenic |
| GAAACAAGGACATTAAAATA+TGG | 0.393289 | 1.2:+17061879 | MS.gene070701:CDS |
| TGGATGAAGACATGGATTCT+TGG | 0.394031 | 1.2:-17062015 | None:intergenic |
| AAAGGAAAATATATTGTTAA+GGG | 0.397381 | 1.2:+17061978 | MS.gene070701:CDS |
| TGATCATGATGTCACATTAC+AGG | 0.397919 | 1.2:+17062562 | MS.gene070701:CDS |
| GCCGTTGATTTCGCAAAATC+CGG | 0.398804 | 1.2:+17062905 | MS.gene070701:CDS |
| TCTATTTCTTCTAAGGGCAT+TGG | 0.408929 | 1.2:+17061948 | MS.gene070701:CDS |
| GAGATATCTACTTTGTCTGT+TGG | 0.411478 | 1.2:+17062471 | MS.gene070701:CDS |
| AAAGAAATGGAACTAGATAT+AGG | 0.411648 | 1.2:-17060778 | None:intergenic |
| CCACATCCTAATGAATGTTC+AGG | 0.418179 | 1.2:+17062434 | MS.gene070701:CDS |
| ACTGTTTCTCTGATGGAATA+GGG | 0.419913 | 1.2:+17061325 | MS.gene070701:CDS |
| AAAACAATATCCAGATTTCA+TGG | 0.421729 | 1.2:+17062961 | MS.gene070701:CDS |
| TCTGCATTTCAAATCAGATA+TGG | 0.422172 | 1.2:+17061414 | MS.gene070701:CDS |
| GAAAGAAAAGGTTCATTTGT+CGG | 0.422221 | 1.2:-17061756 | None:intergenic |
| CTTGGCTTTGACAAAATGTC+AGG | 0.422783 | 1.2:-17059910 | None:intergenic |
| AAGATCAATGTTAGGATGCT+TGG | 0.424863 | 1.2:+17061854 | MS.gene070701:CDS |
| TGTTTCTCCAACCATTGAAC+AGG | 0.435706 | 1.2:-17060724 | None:intergenic |
| ATCAAATACTGTTTCTCTGA+TGG | 0.444190 | 1.2:+17061318 | MS.gene070701:CDS |
| AGATATCTACTTTGTCTGTT+GGG | 0.445837 | 1.2:+17062472 | MS.gene070701:CDS |
| TGTACCTTCCTTACATCATA+TGG | 0.448881 | 1.2:+17062067 | MS.gene070701:CDS |
| TGCTCTTATTCCTCCTCATC+GGG | 0.449479 | 1.2:+17062499 | MS.gene070701:CDS |
| CGGAAAGGAAGATCAATGTT+AGG | 0.451061 | 1.2:+17061846 | MS.gene070701:CDS |
| CGATTCGAAAGATTCACTTC+AGG | 0.464338 | 1.2:-17060865 | None:intergenic |
| CTCCATTAAGTTCATCAACT+TGG | 0.469777 | 1.2:-17063185 | None:intergenic |
| TTAAGGGAAATGATTATTTG+TGG | 0.471129 | 1.2:+17061726 | MS.gene070701:CDS |
| CCTGTGGTTAGTCCAGTTCT+CGG | 0.472970 | 1.2:-17061138 | None:intergenic |
| TGCTGATAAGGAACCTGAAA+AGG | 0.473428 | 1.2:+17062838 | MS.gene070701:CDS |
| AACGATTACAGACATGTTAA+GGG | 0.477883 | 1.2:+17061710 | MS.gene070701:CDS |
| GCAAAATATGCAGCAAGGCT+TGG | 0.480669 | 1.2:+17061207 | MS.gene070701:CDS |
| ATGAACTTAATGGAGTACTA+TGG | 0.484838 | 1.2:+17063193 | MS.gene070701:CDS |
| AAAATCTTTCAATGATAGAA+AGG | 0.485099 | 1.2:+17063264 | MS.gene070701:CDS |
| TTCACCCCATCATGCTGCAT+TGG | 0.488452 | 1.2:+17060358 | MS.gene070701:CDS |
| CTCAACATCATGGAAAGAAA+AGG | 0.489664 | 1.2:-17061768 | None:intergenic |
| GTCTTCATCCAGGAGATGTA+AGG | 0.496818 | 1.2:+17062027 | MS.gene070701:CDS |
| ATGTCCTCTATTTCTTCTAA+GGG | 0.500650 | 1.2:+17061942 | MS.gene070701:CDS |
| AAGAATTGCAGCTCAAAGCT+AGG | 0.502836 | 1.2:+17061814 | MS.gene070701:CDS |
| GAGATTAAGCATCATAAAGA+TGG | 0.503270 | 1.2:+17059766 | MS.gene070701:CDS |
| CATTTCTTTAGATAATGGAT+TGG | 0.507709 | 1.2:+17060792 | MS.gene070701:CDS |
| TTAGATGGTGAATGATCCAT+TGG | 0.508279 | 1.2:-17062527 | None:intergenic |
| GATGGTATTGGAATACACTT+TGG | 0.512546 | 1.2:+17059952 | MS.gene070701:CDS |
| AGAAACGCGAAGGAAGTTAT+CGG | 0.513632 | 1.2:-17060914 | None:intergenic |
| AATGCCCTTAGAAGAAATAG+AGG | 0.516330 | 1.2:-17061946 | None:intergenic |
| ACAGTCCACCATATGATGTA+AGG | 0.516847 | 1.2:-17062075 | None:intergenic |
| GAACACACCATGGAAAACTT+AGG | 0.517896 | 1.2:-17063486 | None:intergenic |
| AGGTGATATAAGAAAATGGA+TGG | 0.520503 | 1.2:+17061158 | MS.gene070701:CDS |
| ATTGTCCAATGCAGCATGAT+GGG | 0.523291 | 1.2:-17060363 | None:intergenic |
| CTCAATTCGCGATATGCTCT+CGG | 0.524264 | 1.2:-17060109 | None:intergenic |
| AGAAACAAAGGTTCATCAAA+GGG | 0.524990 | 1.2:+17061011 | MS.gene070701:CDS |
| TTGTAGCATCCCCAATAACT+AGG | 0.526805 | 1.2:-17063439 | None:intergenic |
| ATCGTTCTGTTGTCCACACT+CGG | 0.527119 | 1.2:+17061585 | MS.gene070701:CDS |
| TTCGCAAGCTCTATACATGA+AGG | 0.527235 | 1.2:-17062869 | None:intergenic |
| CTTGCACATGCTATTTCTCA+AGG | 0.527940 | 1.2:-17061487 | None:intergenic |
| ATGCTCTTATTCCTCCTCAT+CGG | 0.529113 | 1.2:+17062498 | MS.gene070701:CDS |
| TACATTGTCAAGGACACCTT+AGG | 0.530126 | 1.2:+17062788 | MS.gene070701:CDS |
| TCTTACCTTCTCCCTTTCTG+TGG | 0.533280 | 1.2:-17062107 | None:intergenic |
| AATGATAGAAAGGACAAAGA+AGG | 0.534460 | 1.2:+17063274 | MS.gene070701:CDS |
| CCTGAACATTCATTAGGATG+TGG | 0.535870 | 1.2:-17062434 | None:intergenic |
| CTTACCTTCTCCCTTTCTGT+GGG | 0.538379 | 1.2:-17062106 | None:intergenic |
| ACATATTGTTCTCAACATCA+TGG | 0.538517 | 1.2:-17061778 | None:intergenic |
| AAAATATATTGTTAAGGGGA+AGG | 0.542337 | 1.2:+17061983 | MS.gene070701:CDS |
| TGCTGTTGCAATAACTCCTA+AGG | 0.542803 | 1.2:-17062804 | None:intergenic |
| GAGAAACAAAGGTTCATCAA+AGG | 0.542888 | 1.2:+17061010 | MS.gene070701:CDS |
| TTTGATCTTGAGAAACAACT+TGG | 0.543715 | 1.2:+17060475 | MS.gene070701:CDS |
| GTCAGTTACGCAGTGCTCCT+CGG | 0.544392 | 1.2:+17060260 | MS.gene070701:intron |
| AGTCTTTAAAAGGAAGCAAA+GGG | 0.544858 | 1.2:+17061620 | MS.gene070701:CDS |
| ATCTTTGCTTACAACATGGA+TGG | 0.545079 | 1.2:+17059934 | MS.gene070701:CDS |
| TCAAGAGAAACAGTGAGTGT+TGG | 0.545595 | 1.2:+17061246 | MS.gene070701:CDS |
| CCTGATATAGAATTGAAAAG+AGG | 0.545856 | 1.2:+17061291 | MS.gene070701:CDS |
| GTTGCTATGATCCTGTTCAA+TGG | 0.545883 | 1.2:+17060713 | MS.gene070701:CDS |
| TTTCGCAAAATCCGGCGTGC+CGG | 0.546053 | 1.2:+17062913 | MS.gene070701:CDS |
| CTATGATCCTGTTCAATGGT+TGG | 0.546223 | 1.2:+17060717 | MS.gene070701:CDS |
| CCTTCTGGTGGAATCACCAT+GGG | 0.546859 | 1.2:-17060523 | None:intergenic |
| ATCATGCAGTGATGTCACTA+AGG | 0.546956 | 1.2:+17063302 | MS.gene070701:CDS |
| TGTCAATTGCTTGCAAAGGA+AGG | 0.548121 | 1.2:-17060603 | None:intergenic |
| ATGTTGTAAGCAAAGATCCT+TGG | 0.552810 | 1.2:-17059928 | None:intergenic |
| ACAACAGAACGATTACTTGA+CGG | 0.558329 | 1.2:-17061575 | None:intergenic |
| AAGAATCCATGTCTTCATCC+AGG | 0.558868 | 1.2:+17062017 | MS.gene070701:CDS |
| TCCTCATCGGGAAAATCCAA+TGG | 0.563415 | 1.2:+17062511 | MS.gene070701:CDS |
| AAATCAAATTCTCAAGGTGG+TGG | 0.564476 | 1.2:+17063361 | MS.gene070701:CDS |
| GTTGTCCACACTCGGTGTCA+AGG | 0.564478 | 1.2:+17061593 | MS.gene070701:CDS |
| GAGTCTTTAAAAGGAAGCAA+AGG | 0.569738 | 1.2:+17061619 | MS.gene070701:CDS |
| GATTGTCCAATGCAGCATGA+TGG | 0.570730 | 1.2:-17060364 | None:intergenic |
| ATCAGATATGGTGGATACAA+AGG | 0.572566 | 1.2:+17061426 | MS.gene070701:CDS |
| TCGATCCTTGACACCGAGTG+TGG | 0.576357 | 1.2:-17061598 | None:intergenic |
| ATCATGTCGAGTGCATTGAA+TGG | 0.577024 | 1.2:-17061678 | None:intergenic |
| AAGTTGTTTCTCAAGATCAA+AGG | 0.577468 | 1.2:-17060473 | None:intergenic |
| ACATATCATCCTAGTTATTG+GGG | 0.579365 | 1.2:+17063430 | MS.gene070701:CDS |
| TATCTGATTTGAAATGCAGA+TGG | 0.580249 | 1.2:-17061411 | None:intergenic |
| GCATTTCAAATCAGATATGG+TGG | 0.580941 | 1.2:+17061417 | MS.gene070701:CDS |
| TCTGTCCACGTCTATACAAG+AGG | 0.585369 | 1.2:-17060989 | None:intergenic |
| TTAGTGTCAATTGCTTGCAA+AGG | 0.587391 | 1.2:-17060607 | None:intergenic |
| TACTCTTATTCAGATAAAGA+AGG | 0.588825 | 1.2:+17063513 | MS.gene070701:CDS |
| AAGGAAAATATATTGTTAAG+GGG | 0.591481 | 1.2:+17061979 | MS.gene070701:CDS |
| TGGTACTTCAGCCGGCACGC+CGG | 0.600336 | 1.2:-17062924 | None:intergenic |
| ATAAGAAAATCAAATTCTCA+AGG | 0.603489 | 1.2:+17063355 | MS.gene070701:CDS |
| CCCTCCAAAATATATTTCTG+TGG | 0.606687 | 1.2:+17060841 | MS.gene070701:CDS |
| CTGACAACAAATTGGATGAA+CGG | 0.607022 | 1.2:-17060963 | None:intergenic |
| TCCTTCTGGTGGAATCACCA+TGG | 0.610011 | 1.2:-17060524 | None:intergenic |
| TGAATGTTCAGGAAGTGACT+TGG | 0.612881 | 1.2:+17062445 | MS.gene070701:CDS |
| ACTTGACGGTTAAGAAAGCA+CGG | 0.614109 | 1.2:-17061561 | None:intergenic |
| CAATACTAGATGTATTGTCA+TGG | 0.614959 | 1.2:+17061526 | MS.gene070701:CDS |
| GGCAAGTTGAATCCTTCTGG+TGG | 0.616684 | 1.2:-17060535 | None:intergenic |
| ACATCTCCTGGATGAAGACA+TGG | 0.618058 | 1.2:-17062023 | None:intergenic |
| CCCATGGTGATTCCACCAGA+AGG | 0.619746 | 1.2:+17060523 | MS.gene070701:CDS |
| TCGCAAGCTCTATACATGAA+GGG | 0.624470 | 1.2:-17062868 | None:intergenic |
| ACTTTGGCTACAGGATGTAG+AGG | 0.624783 | 1.2:+17062751 | MS.gene070701:intron |
| TGTTCAGGAAGTGACTTGGA+TGG | 0.629681 | 1.2:+17062449 | MS.gene070701:CDS |
| TCCACCATATGATGTAAGGA+AGG | 0.632969 | 1.2:-17062071 | None:intergenic |
| TTTCACTCACTACATTGTCA+AGG | 0.634274 | 1.2:+17062778 | MS.gene070701:CDS |
| GGTGATATAAGAAAATGGAT+GGG | 0.634803 | 1.2:+17061159 | MS.gene070701:CDS |
| CCGAGAACTGGACTAACCAC+AGG | 0.638320 | 1.2:+17061138 | MS.gene070701:CDS |
| ACAGAAGCAGAAATAATCAG+TGG | 0.638823 | 1.2:+17063223 | MS.gene070701:CDS |
| AGGTTCCTCTTGTATAGACG+TGG | 0.643676 | 1.2:+17060984 | MS.gene070701:CDS |
| CATCAACAAAAGAAACGCGA+AGG | 0.645316 | 1.2:-17060924 | None:intergenic |
| AAGGACATTAAAATATGGAG+AGG | 0.645356 | 1.2:+17061884 | MS.gene070701:CDS |
| AAGGATCTTTGCTTACAACA+TGG | 0.646173 | 1.2:+17059930 | MS.gene070701:CDS |
| AGACGTGGACAGAGAAACAA+AGG | 0.646727 | 1.2:+17060999 | MS.gene070701:CDS |
| AGAGTATCATGAACACACCA+TGG | 0.651317 | 1.2:-17063496 | None:intergenic |
| TGAACTTCCACAAAATACCG+AGG | 0.651513 | 1.2:+17060402 | MS.gene070701:CDS |
| GATGAGGAGGAATAAGAGCA+TGG | 0.651707 | 1.2:-17062496 | None:intergenic |
| TATTGGGGATGCTACAATGA+GGG | 0.658552 | 1.2:+17063445 | MS.gene070701:CDS |
| ATGTGGCAAAATATGCAGCA+AGG | 0.659612 | 1.2:+17061202 | MS.gene070701:CDS |
| ACCTTCCTTACATCATATGG+TGG | 0.663906 | 1.2:+17062070 | MS.gene070701:CDS |
| AGAAAATCAAATTCTCAAGG+TGG | 0.674350 | 1.2:+17063358 | MS.gene070701:CDS |
| GTGCAACATTCTTCACCTCG+CGG | 0.681079 | 1.2:-17063036 | None:intergenic |
| TAGGATGCTTGGATGAAACA+AGG | 0.681329 | 1.2:+17061865 | MS.gene070701:CDS |
| TTATTGGGGATGCTACAATG+AGG | 0.683874 | 1.2:+17063444 | MS.gene070701:CDS |
| GACATCATGATCAACATGCA+TGG | 0.687239 | 1.2:-17062552 | None:intergenic |
| GCACTCGACATGATGTCACA+AGG | 0.688978 | 1.2:+17061687 | MS.gene070701:CDS |
| ACTAAACACCTATCTTACAG+TGG | 0.705894 | 1.2:+17059859 | MS.gene070701:CDS |
| TTGTCCAATGCAGCATGATG+GGG | 0.706800 | 1.2:-17060362 | None:intergenic |
| AATTGCGCGATAACTCAGCG+TGG | 0.742122 | 1.2:+17061106 | MS.gene070701:CDS |
| AATCGGAAAGCTTTACCGCG+AGG | 0.742148 | 1.2:+17063021 | MS.gene070701:CDS |
| CTTCTGGTGGAATCACCATG+GGG | 0.748577 | 1.2:-17060522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATTTTTATATACAAT+AGG | - | chr1.2:17062674-17062693 | None:intergenic | 10.0% |
| !! | AAAAGGAAAATATATTGTTA+AGG | + | chr1.2:17061977-17061996 | MS.gene070701:CDS | 15.0% |
| !! | AAAGGAAAATATATTGTTAA+GGG | + | chr1.2:17061978-17061997 | MS.gene070701:CDS | 15.0% |
| !!! | TATATACATTTTTCTTAATC+TGG | - | chr1.2:17060046-17060065 | None:intergenic | 15.0% |
| !!! | TATTCAAATTTTATTCTTTG+TGG | - | chr1.2:17060652-17060671 | None:intergenic | 15.0% |
| !! | AAAATCTTTCAATGATAGAA+AGG | + | chr1.2:17063264-17063283 | MS.gene070701:CDS | 20.0% |
| !! | AAGGAAAATATATTGTTAAG+GGG | + | chr1.2:17061979-17061998 | MS.gene070701:CDS | 20.0% |
| !! | ATAAGAAAATCAAATTCTCA+AGG | + | chr1.2:17063355-17063374 | MS.gene070701:CDS | 20.0% |
| !! | TAAAAAATGGCATAGAAATT+GGG | + | chr1.2:17061046-17061065 | MS.gene070701:CDS | 20.0% |
| !! | TTATTGAAACAAATGTTGAA+TGG | - | chr1.2:17062162-17062181 | None:intergenic | 20.0% |
| !!! | ATTTTGAACAGAATTTTGTA+TGG | - | chr1.2:17060559-17060578 | None:intergenic | 20.0% |
| !!! | TAATGTTTTGCATTTTATTG+TGG | + | chr1.2:17063602-17063621 | MS.gene070701:CDS | 20.0% |
| !!! | TTCTGAAATCAAGTTTTTTA+AGG | + | chr1.2:17060300-17060319 | MS.gene070701:CDS | 20.0% |
| !!! | TTTTAGTGAATGATTTTTTG+AGG | - | chr1.2:17063072-17063091 | None:intergenic | 20.0% |
| !!! | TTTTGTAACAAATGATTGAA+TGG | - | chr1.2:17062270-17062289 | None:intergenic | 20.0% |
| ! | AAAAAATGGCATAGAAATTG+GGG | + | chr1.2:17061047-17061066 | MS.gene070701:CDS | 25.0% |
| ! | AAAACAATATCCAGATTTCA+TGG | + | chr1.2:17062961-17062980 | MS.gene070701:CDS | 25.0% |
| ! | AAAATATATTGTTAAGGGGA+AGG | + | chr1.2:17061983-17062002 | MS.gene070701:CDS | 25.0% |
| ! | AAAGAAATGGAACTAGATAT+AGG | - | chr1.2:17060781-17060800 | None:intergenic | 25.0% |
| ! | AACATATCATCCTAGTTATT+GGG | + | chr1.2:17063429-17063448 | MS.gene070701:CDS | 25.0% |
| ! | AGGGAAAATATCATATGAAT+TGG | + | chr1.2:17061344-17061363 | MS.gene070701:CDS | 25.0% |
| ! | AGGTATGAGTAAAATAGTAT+AGG | + | chr1.2:17062227-17062246 | MS.gene070701:intron | 25.0% |
| ! | AGTTCCATTTCTTTAGATAA+TGG | + | chr1.2:17060787-17060806 | MS.gene070701:CDS | 25.0% |
| ! | ATATCTCTTCCAAGAAAAAA+TGG | + | chr1.2:17061918-17061937 | MS.gene070701:CDS | 25.0% |
| ! | CAATCCATTATCTAAAGAAA+TGG | - | chr1.2:17060794-17060813 | None:intergenic | 25.0% |
| ! | CTAAAAAATGGCATAGAAAT+TGG | + | chr1.2:17061045-17061064 | MS.gene070701:CDS | 25.0% |
| ! | GAAACAAGGACATTAAAATA+TGG | + | chr1.2:17061879-17061898 | MS.gene070701:CDS | 25.0% |
| ! | GATTATATTCATTATGCGTA+TGG | + | chr1.2:17062369-17062388 | MS.gene070701:intron | 25.0% |
| ! | TAACAAATGATTGAATGGAT+AGG | - | chr1.2:17062265-17062284 | None:intergenic | 25.0% |
| ! | TAACATATCATCCTAGTTAT+TGG | + | chr1.2:17063428-17063447 | MS.gene070701:CDS | 25.0% |
| ! | TACAAAATCAACATAACTTG+AGG | + | chr1.2:17062283-17062302 | MS.gene070701:intron | 25.0% |
| ! | TACTCTTATTCAGATAAAGA+AGG | + | chr1.2:17063513-17063532 | MS.gene070701:CDS | 25.0% |
| ! | TATATACAATAGGCAAAACT+AGG | - | chr1.2:17062664-17062683 | None:intergenic | 25.0% |
| ! | TATCAATCAAACAGCATAAT+CGG | + | chr1.2:17063004-17063023 | MS.gene070701:CDS | 25.0% |
| ! | TTAAGGGAAATGATTATTTG+TGG | + | chr1.2:17061726-17061745 | MS.gene070701:CDS | 25.0% |
| ! | TTGAATGGATAAGAAATTTG+TGG | - | chr1.2:17062147-17062166 | None:intergenic | 25.0% |
| !! | TTTTCATGAAATCAAGAATG+TGG | + | chr1.2:17061185-17061204 | MS.gene070701:CDS | 25.0% |
| !!! | AATCTGGATATTGTTTTACA+TGG | - | chr1.2:17062958-17062977 | None:intergenic | 25.0% |
| !!! | ATTTTTCTGCTATTTGTCTA+AGG | + | chr1.2:17060065-17060084 | MS.gene070701:CDS | 25.0% |
| !!! | CATTTCTTTAGATAATGGAT+TGG | + | chr1.2:17060792-17060811 | MS.gene070701:CDS | 25.0% |
| !!! | TATCTTCTTTTTGTGTCATT+TGG | - | chr1.2:17062606-17062625 | None:intergenic | 25.0% |
| !!! | TGACACTAATCTTTTTCATA+TGG | + | chr1.2:17060621-17060640 | MS.gene070701:CDS | 25.0% |
| !!! | TTTTGAGAAGTACACAAAAA+TGG | + | chr1.2:17063135-17063154 | MS.gene070701:CDS | 25.0% |
| AAAATCAACATAACTTGAGG+TGG | + | chr1.2:17062286-17062305 | MS.gene070701:intron | 30.0% | |
| AACGATTACAGACATGTTAA+GGG | + | chr1.2:17061710-17061729 | MS.gene070701:CDS | 30.0% | |
| AAGGACATTAAAATATGGAG+AGG | + | chr1.2:17061884-17061903 | MS.gene070701:CDS | 30.0% | |
| AATGATAGAAAGGACAAAGA+AGG | + | chr1.2:17063274-17063293 | MS.gene070701:CDS | 30.0% | |
| ACATATCATCCTAGTTATTG+GGG | + | chr1.2:17063430-17063449 | MS.gene070701:CDS | 30.0% | |
| ACATATTGTTCTCAACATCA+TGG | - | chr1.2:17061781-17061800 | None:intergenic | 30.0% | |
| AGAAAATCAAATTCTCAAGG+TGG | + | chr1.2:17063358-17063377 | MS.gene070701:CDS | 30.0% | |
| AGAAACAAAGGTTCATCAAA+GGG | + | chr1.2:17061011-17061030 | MS.gene070701:CDS | 30.0% | |
| AGAGAAAACTTAGTGTACTT+TGG | + | chr1.2:17059989-17060008 | MS.gene070701:CDS | 30.0% | |
| AGATATCTACTTTGTCTGTT+GGG | + | chr1.2:17062472-17062491 | MS.gene070701:CDS | 30.0% | |
| AGGTGATATAAGAAAATGGA+TGG | + | chr1.2:17061158-17061177 | MS.gene070701:CDS | 30.0% | |
| CAAGAAGTTGCTAAAAAATG+TGG | + | chr1.2:17061369-17061388 | MS.gene070701:CDS | 30.0% | |
| CAATACTAGATGTATTGTCA+TGG | + | chr1.2:17061526-17061545 | MS.gene070701:CDS | 30.0% | |
| CCTGATATAGAATTGAAAAG+AGG | + | chr1.2:17061291-17061310 | MS.gene070701:CDS | 30.0% | |
| CGTAACTGACAATTAAGATA+GGG | - | chr1.2:17060250-17060269 | None:intergenic | 30.0% | |
| GAAAGAAAAGGTTCATTTGT+CGG | - | chr1.2:17061759-17061778 | None:intergenic | 30.0% | |
| GAACTTATAGAGTGAAAGAT+TGG | + | chr1.2:17063551-17063570 | MS.gene070701:CDS | 30.0% | |
| GAGAAAACTTAGTGTACTTT+GGG | + | chr1.2:17059990-17060009 | MS.gene070701:CDS | 30.0% | |
| GAGATTAAGCATCATAAAGA+TGG | + | chr1.2:17059766-17059785 | MS.gene070701:CDS | 30.0% | |
| GATCATGACATGAAGATTAA+TGG | + | chr1.2:17063112-17063131 | MS.gene070701:CDS | 30.0% | |
| GGTGATATAAGAAAATGGAT+GGG | + | chr1.2:17061159-17061178 | MS.gene070701:CDS | 30.0% | |
| GTACTGTCTACACTAAAAAA+TGG | + | chr1.2:17061033-17061052 | MS.gene070701:CDS | 30.0% | |
| TAAAGCAACTAACCTGAAAA+AGG | - | chr1.2:17060170-17060189 | None:intergenic | 30.0% | |
| TAAGGAATGAAGCTAGAAAT+TGG | + | chr1.2:17063320-17063339 | MS.gene070701:CDS | 30.0% | |
| TCAAGTGCTTCTGTTAAATT+CGG | + | chr1.2:17060018-17060037 | MS.gene070701:CDS | 30.0% | |
| TCTGCATTTCAAATCAGATA+TGG | + | chr1.2:17061414-17061433 | MS.gene070701:CDS | 30.0% | |
| TTTGATCTTGAGAAACAACT+TGG | + | chr1.2:17060475-17060494 | MS.gene070701:CDS | 30.0% | |
| ! | AAATTTGAATTTTGTCCCCA+TGG | + | chr1.2:17060507-17060526 | MS.gene070701:CDS | 30.0% |
| ! | AAGTACACTAAGTTTTCTCT+TGG | - | chr1.2:17059989-17060008 | None:intergenic | 30.0% |
| ! | AGGACCACAGAAATATATTT+TGG | - | chr1.2:17060848-17060867 | None:intergenic | 30.0% |
| ! | AGTCTTTAAAAGGAAGCAAA+GGG | + | chr1.2:17061620-17061639 | MS.gene070701:CDS | 30.0% |
| ! | ATCAAATACTGTTTCTCTGA+TGG | + | chr1.2:17061318-17061337 | MS.gene070701:CDS | 30.0% |
| ! | ATCATTTCCTAAGTTTTCCA+TGG | + | chr1.2:17063479-17063498 | MS.gene070701:CDS | 30.0% |
| ! | ATGAACTTAATGGAGTACTA+TGG | + | chr1.2:17063193-17063212 | MS.gene070701:CDS | 30.0% |
| ! | ATGCTGTTTGATTGATAAGT+TGG | - | chr1.2:17063001-17063020 | None:intergenic | 30.0% |
| ! | ATGTCCTCTATTTCTTCTAA+GGG | + | chr1.2:17061942-17061961 | MS.gene070701:CDS | 30.0% |
| ! | CCTCTTTTCAATTCTATATC+AGG | - | chr1.2:17061294-17061313 | None:intergenic | 30.0% |
| ! | TATCTGATTTGAAATGCAGA+TGG | - | chr1.2:17061414-17061433 | None:intergenic | 30.0% |
| ! | TATGTCCTCTATTTCTTCTA+AGG | + | chr1.2:17061941-17061960 | MS.gene070701:CDS | 30.0% |
| ! | TCAAAGCTAGGATTTTTGTT+CGG | + | chr1.2:17061826-17061845 | MS.gene070701:CDS | 30.0% |
| ! | TCTAAAGTGGTATATTTGCA+GGG | - | chr1.2:17062335-17062354 | None:intergenic | 30.0% |
| ! | TGTTTTACATGGAGATGTTT+TGG | - | chr1.2:17062947-17062966 | None:intergenic | 30.0% |
| !! | AAGTTGTTTCTCAAGATCAA+AGG | - | chr1.2:17060476-17060495 | None:intergenic | 30.0% |
| !! | ACCACAGAAATATATTTTGG+AGG | - | chr1.2:17060845-17060864 | None:intergenic | 30.0% |
| !! | CCACAGAAATATATTTTGGA+GGG | - | chr1.2:17060844-17060863 | None:intergenic | 30.0% |
| !! | CGATAGTGTTGACAAAAATT+CGG | - | chr1.2:17060430-17060449 | None:intergenic | 30.0% |
| !! | GAAAGTTTAGTTGATGAGTT+AGG | - | chr1.2:17061468-17061487 | None:intergenic | 30.0% |
| !! | TACCAAGTTGATGAACTTAA+TGG | + | chr1.2:17063183-17063202 | MS.gene070701:CDS | 30.0% |
| !! | TATTGCTTTTCCATGAAATC+TGG | - | chr1.2:17062974-17062993 | None:intergenic | 30.0% |
| !! | TTCTAAAGTGGTATATTTGC+AGG | - | chr1.2:17062336-17062355 | None:intergenic | 30.0% |
| !! | TTCTTTTGTTGATGAGAACA+TGG | + | chr1.2:17060933-17060952 | MS.gene070701:CDS | 30.0% |
| AAATCAAATTCTCAAGGTGG+TGG | + | chr1.2:17063361-17063380 | MS.gene070701:CDS | 35.0% | |
| AAGATCAATGTTAGGATGCT+TGG | + | chr1.2:17061854-17061873 | MS.gene070701:CDS | 35.0% | |
| AAGGATCTTTGCTTACAACA+TGG | + | chr1.2:17059930-17059949 | MS.gene070701:CDS | 35.0% | |
| AATGCCCTTAGAAGAAATAG+AGG | - | chr1.2:17061949-17061968 | None:intergenic | 35.0% | |
| ACAACAGAACGATTACTTGA+CGG | - | chr1.2:17061578-17061597 | None:intergenic | 35.0% | |
| ACAGAAGCAGAAATAATCAG+TGG | + | chr1.2:17063223-17063242 | MS.gene070701:CDS | 35.0% | |
| ACTAAACACCTATCTTACAG+TGG | + | chr1.2:17059859-17059878 | MS.gene070701:CDS | 35.0% | |
| AGGAAGCTTATGACAATCAT+TGG | + | chr1.2:17060320-17060339 | MS.gene070701:CDS | 35.0% | |
| ATCTTTGCTTACAACATGGA+TGG | + | chr1.2:17059934-17059953 | MS.gene070701:CDS | 35.0% | |
| ATGTTGTAAGCAAAGATCCT+TGG | - | chr1.2:17059931-17059950 | None:intergenic | 35.0% | |
| CACTCTATAAGTTCTACTCT+TGG | - | chr1.2:17063545-17063564 | None:intergenic | 35.0% | |
| CCACAGGTGATATAAGAAAA+TGG | + | chr1.2:17061154-17061173 | MS.gene070701:CDS | 35.0% | |
| CTACAATGAGGGACTAAATA+AGG | + | chr1.2:17063456-17063475 | MS.gene070701:CDS | 35.0% | |
| CTCAACATCATGGAAAGAAA+AGG | - | chr1.2:17061771-17061790 | None:intergenic | 35.0% | |
| CTCCATTAAGTTCATCAACT+TGG | - | chr1.2:17063188-17063207 | None:intergenic | 35.0% | |
| CTGAAAAAGGAGAAGTTTCT+TGG | - | chr1.2:17060157-17060176 | None:intergenic | 35.0% | |
| CTGACAACAAATTGGATGAA+CGG | - | chr1.2:17060966-17060985 | None:intergenic | 35.0% | |
| GAACATTTCCACTGTAAGAT+AGG | - | chr1.2:17059870-17059889 | None:intergenic | 35.0% | |
| GAACGATTACAGACATGTTA+AGG | + | chr1.2:17061709-17061728 | MS.gene070701:CDS | 35.0% | |
| GAGAAACAAAGGTTCATCAA+AGG | + | chr1.2:17061010-17061029 | MS.gene070701:CDS | 35.0% | |
| GAGATATCTACTTTGTCTGT+TGG | + | chr1.2:17062471-17062490 | MS.gene070701:CDS | 35.0% | |
| GCATTTCAAATCAGATATGG+TGG | + | chr1.2:17061417-17061436 | MS.gene070701:CDS | 35.0% | |
| GCGTAACTGACAATTAAGAT+AGG | - | chr1.2:17060251-17060270 | None:intergenic | 35.0% | |
| GCTATGACATATCACTACTT+TGG | + | chr1.2:17062735-17062754 | MS.gene070701:intron | 35.0% | |
| TCAAGGATCGAGTCTTTAAA+AGG | + | chr1.2:17061610-17061629 | MS.gene070701:CDS | 35.0% | |
| TCACTTCCTGAACATTCATT+AGG | - | chr1.2:17062443-17062462 | None:intergenic | 35.0% | |
| TGATCATGATGTCACATTAC+AGG | + | chr1.2:17062562-17062581 | MS.gene070701:CDS | 35.0% | |
| TGCTAAAAAATGTGGTTGCA+AGG | + | chr1.2:17061377-17061396 | MS.gene070701:CDS | 35.0% | |
| TGTACCTTCCTTACATCATA+TGG | + | chr1.2:17062067-17062086 | MS.gene070701:CDS | 35.0% | |
| TTAGATGGTGAATGATCCAT+TGG | - | chr1.2:17062530-17062549 | None:intergenic | 35.0% | |
| TTAGTGTCAATTGCTTGCAA+AGG | - | chr1.2:17060610-17060629 | None:intergenic | 35.0% | |
| TTGACAAAAATTCGGAACCT+CGG | - | chr1.2:17060422-17060441 | None:intergenic | 35.0% | |
| TTGCAGTTGAGAATATAGCA+AGG | + | chr1.2:17062207-17062226 | MS.gene070701:intron | 35.0% | |
| TTTCACTCACTACATTGTCA+AGG | + | chr1.2:17062778-17062797 | MS.gene070701:CDS | 35.0% | |
| TTTCTCGTGTCTGAATTTGT+TGG | + | chr1.2:17062713-17062732 | MS.gene070701:intron | 35.0% | |
| ! | ACTGTTTCTCTGATGGAATA+GGG | + | chr1.2:17061325-17061344 | MS.gene070701:CDS | 35.0% |
| ! | AGGTTAGTTGCTTTAGTTTC+AGG | + | chr1.2:17060175-17060194 | MS.gene070701:intron | 35.0% |
| ! | CAAGAAACTTCTCCTTTTTC+AGG | + | chr1.2:17060155-17060174 | MS.gene070701:CDS | 35.0% |
| ! | CCATTTTCTTATATCACCTG+TGG | - | chr1.2:17061157-17061176 | None:intergenic | 35.0% |
| ! | CCCTCCAAAATATATTTCTG+TGG | + | chr1.2:17060841-17060860 | MS.gene070701:CDS | 35.0% |
| ! | GAGTCTTTAAAAGGAAGCAA+AGG | + | chr1.2:17061619-17061638 | MS.gene070701:CDS | 35.0% |
| ! | GATGGTATTGGAATACACTT+TGG | + | chr1.2:17059952-17059971 | MS.gene070701:CDS | 35.0% |
| ! | GGTTAGTTGCTTTAGTTTCA+GGG | + | chr1.2:17060176-17060195 | MS.gene070701:intron | 35.0% |
| ! | TACTGTTTCTCTGATGGAAT+AGG | + | chr1.2:17061324-17061343 | MS.gene070701:CDS | 35.0% |
| ! | TCGCTATCAATCTTCTAAAG+TGG | - | chr1.2:17062348-17062367 | None:intergenic | 35.0% |
| ! | TCTATTTCTTCTAAGGGCAT+TGG | + | chr1.2:17061948-17061967 | MS.gene070701:CDS | 35.0% |
| !! | ATCAGATATGGTGGATACAA+AGG | + | chr1.2:17061426-17061445 | MS.gene070701:CDS | 35.0% |
| !!! | AAATTTTTGGAGCAACATGC+TGG | + | chr1.2:17059721-17059740 | MS.gene070701:CDS | 35.0% |
| !!! | GAGGACATACCATTTTTTCT+TGG | - | chr1.2:17061930-17061949 | None:intergenic | 35.0% |
| !!! | TCAACATGCATGGTTTTAGA+TGG | - | chr1.2:17062545-17062564 | None:intergenic | 35.0% |
| AAGAATCCATGTCTTCATCC+AGG | + | chr1.2:17062017-17062036 | MS.gene070701:CDS | 40.0% | |
| AAGAATTGCAGCTCAAAGCT+AGG | + | chr1.2:17061814-17061833 | MS.gene070701:CDS | 40.0% | |
| ACAGTCCACCATATGATGTA+AGG | - | chr1.2:17062078-17062097 | None:intergenic | 40.0% | |
| ACCTTCCTTACATCATATGG+TGG | + | chr1.2:17062070-17062089 | MS.gene070701:CDS | 40.0% | |
| ACTTGACGGTTAAGAAAGCA+CGG | - | chr1.2:17061564-17061583 | None:intergenic | 40.0% | |
| AGAAACGCGAAGGAAGTTAT+CGG | - | chr1.2:17060917-17060936 | None:intergenic | 40.0% | |
| AGAGGAACCTGACAACAAAT+TGG | - | chr1.2:17060974-17060993 | None:intergenic | 40.0% | |
| ATCATGCAGTGATGTCACTA+AGG | + | chr1.2:17063302-17063321 | MS.gene070701:CDS | 40.0% | |
| ATCATGTCGAGTGCATTGAA+TGG | - | chr1.2:17061681-17061700 | None:intergenic | 40.0% | |
| ATGCTCTTATTCCTCCTCAT+CGG | + | chr1.2:17062498-17062517 | MS.gene070701:CDS | 40.0% | |
| ATGTGGCAAAATATGCAGCA+AGG | + | chr1.2:17061202-17061221 | MS.gene070701:CDS | 40.0% | |
| ATTGTCCAATGCAGCATGAT+GGG | - | chr1.2:17060366-17060385 | None:intergenic | 40.0% | |
| CATATCACTACTTTGGCTAC+AGG | + | chr1.2:17062742-17062761 | MS.gene070701:intron | 40.0% | |
| CATCAACAAAAGAAACGCGA+AGG | - | chr1.2:17060927-17060946 | None:intergenic | 40.0% | |
| CCACATCCTAATGAATGTTC+AGG | + | chr1.2:17062434-17062453 | MS.gene070701:CDS | 40.0% | |
| CCTGAACATTCATTAGGATG+TGG | - | chr1.2:17062437-17062456 | None:intergenic | 40.0% | |
| CGATTCGAAAGATTCACTTC+AGG | - | chr1.2:17060868-17060887 | None:intergenic | 40.0% | |
| CGGAAAGGAAGATCAATGTT+AGG | + | chr1.2:17061846-17061865 | MS.gene070701:CDS | 40.0% | |
| CTATGATCCTGTTCAATGGT+TGG | + | chr1.2:17060717-17060736 | MS.gene070701:CDS | 40.0% | |
| CTCAAAATCCTTACATCTCC+TGG | - | chr1.2:17062038-17062057 | None:intergenic | 40.0% | |
| GAACACACCATGGAAAACTT+AGG | - | chr1.2:17063489-17063508 | None:intergenic | 40.0% | |
| GACATCATGATCAACATGCA+TGG | - | chr1.2:17062555-17062574 | None:intergenic | 40.0% | |
| GCTTACAACATGGATGGTAT+TGG | + | chr1.2:17059940-17059959 | MS.gene070701:CDS | 40.0% | |
| GTTGCTATGATCCTGTTCAA+TGG | + | chr1.2:17060713-17060732 | MS.gene070701:CDS | 40.0% | |
| TACATTGTCAAGGACACCTT+AGG | + | chr1.2:17062788-17062807 | MS.gene070701:CDS | 40.0% | |
| TAGGATGCTTGGATGAAACA+AGG | + | chr1.2:17061865-17061884 | MS.gene070701:CDS | 40.0% | |
| TATTGGGGATGCTACAATGA+GGG | + | chr1.2:17063445-17063464 | MS.gene070701:CDS | 40.0% | |
| TCAAGAGAAACAGTGAGTGT+TGG | + | chr1.2:17061246-17061265 | MS.gene070701:CDS | 40.0% | |
| TCCACCATATGATGTAAGGA+AGG | - | chr1.2:17062074-17062093 | None:intergenic | 40.0% | |
| TCGCAAGCTCTATACATGAA+GGG | - | chr1.2:17062871-17062890 | None:intergenic | 40.0% | |
| TCTCTACAGCAAGAACAGTT+TGG | - | chr1.2:17059750-17059769 | None:intergenic | 40.0% | |
| TGAACTTCCACAAAATACCG+AGG | + | chr1.2:17060402-17060421 | MS.gene070701:CDS | 40.0% | |
| TGAATGTTCAGGAAGTGACT+TGG | + | chr1.2:17062445-17062464 | MS.gene070701:CDS | 40.0% | |
| TGCTGATAAGGAACCTGAAA+AGG | + | chr1.2:17062838-17062857 | MS.gene070701:CDS | 40.0% | |
| TGCTGTTGCAATAACTCCTA+AGG | - | chr1.2:17062807-17062826 | None:intergenic | 40.0% | |
| TGGATGAAGACATGGATTCT+TGG | - | chr1.2:17062018-17062037 | None:intergenic | 40.0% | |
| TGTCAATTGCTTGCAAAGGA+AGG | - | chr1.2:17060606-17060625 | None:intergenic | 40.0% | |
| TGTTTCTCCAACCATTGAAC+AGG | - | chr1.2:17060727-17060746 | None:intergenic | 40.0% | |
| TTATTGGGGATGCTACAATG+AGG | + | chr1.2:17063444-17063463 | MS.gene070701:CDS | 40.0% | |
| TTCGCAAGCTCTATACATGA+AGG | - | chr1.2:17062872-17062891 | None:intergenic | 40.0% | |
| TTGTAGCATCCCCAATAACT+AGG | - | chr1.2:17063442-17063461 | None:intergenic | 40.0% | |
| ! | ACACACTGTGTTTGCTGATA+AGG | + | chr1.2:17062826-17062845 | MS.gene070701:CDS | 40.0% |
| ! | AGAGTATCATGAACACACCA+TGG | - | chr1.2:17063499-17063518 | None:intergenic | 40.0% |
| ! | CTGACATTTTGTCAAAGCCA+AGG | + | chr1.2:17059911-17059930 | MS.gene070701:CDS | 40.0% |
| ! | GCTAGGATTTTTGTTCGGAA+AGG | + | chr1.2:17061831-17061850 | MS.gene070701:CDS | 40.0% |
| ! | TATGGCAAGTTGAATCCTTC+TGG | - | chr1.2:17060541-17060560 | None:intergenic | 40.0% |
| !! | AAGGGCATTGGAGCAAAAAA+AGG | + | chr1.2:17061960-17061979 | MS.gene070701:CDS | 40.0% |
| !! | ACATCTTTTTCGTAGATCCG+AGG | - | chr1.2:17060280-17060299 | None:intergenic | 40.0% |
| !! | CGTTCATCCAATTTGTTGTC+AGG | + | chr1.2:17060964-17060983 | MS.gene070701:CDS | 40.0% |
| !! | CTTGCACATGCTATTTCTCA+AGG | - | chr1.2:17061490-17061509 | None:intergenic | 40.0% |
| !! | CTTGGCTTTGACAAAATGTC+AGG | - | chr1.2:17059913-17059932 | None:intergenic | 40.0% |
| !!! | AGATGTTTTGGTACTTCAGC+CGG | - | chr1.2:17062935-17062954 | None:intergenic | 40.0% |
| !!! | GTGTTGTTTTCCCACAGAAA+GGG | + | chr1.2:17062096-17062115 | MS.gene070701:CDS | 40.0% |
| !!! | TGTGTTGTTTTCCCACAGAA+AGG | + | chr1.2:17062095-17062114 | MS.gene070701:CDS | 40.0% |
| ACATCTCCTGGATGAAGACA+TGG | - | chr1.2:17062026-17062045 | None:intergenic | 45.0% | |
| ACTTTGGCTACAGGATGTAG+AGG | + | chr1.2:17062751-17062770 | MS.gene070701:intron | 45.0% | |
| AGACGTGGACAGAGAAACAA+AGG | + | chr1.2:17060999-17061018 | MS.gene070701:CDS | 45.0% | |
| AGGTTCCTCTTGTATAGACG+TGG | + | chr1.2:17060984-17061003 | MS.gene070701:CDS | 45.0% | |
| ATCGTTCTGTTGTCCACACT+CGG | + | chr1.2:17061585-17061604 | MS.gene070701:CDS | 45.0% | |
| CTCAATTCGCGATATGCTCT+CGG | - | chr1.2:17060112-17060131 | None:intergenic | 45.0% | |
| CTTACCTTCTCCCTTTCTGT+GGG | - | chr1.2:17062109-17062128 | None:intergenic | 45.0% | |
| GATGAGGAGGAATAAGAGCA+TGG | - | chr1.2:17062499-17062518 | None:intergenic | 45.0% | |
| GATTGTCCAATGCAGCATGA+TGG | - | chr1.2:17060367-17060386 | None:intergenic | 45.0% | |
| GCAAAATATGCAGCAAGGCT+TGG | + | chr1.2:17061207-17061226 | MS.gene070701:CDS | 45.0% | |
| GTCTTCATCCAGGAGATGTA+AGG | + | chr1.2:17062027-17062046 | MS.gene070701:CDS | 45.0% | |
| TCCTCATCGGGAAAATCCAA+TGG | + | chr1.2:17062511-17062530 | MS.gene070701:CDS | 45.0% | |
| TCTGTCCACGTCTATACAAG+AGG | - | chr1.2:17060992-17061011 | None:intergenic | 45.0% | |
| TCTTACCTTCTCCCTTTCTG+TGG | - | chr1.2:17062110-17062129 | None:intergenic | 45.0% | |
| TGCTCTTATTCCTCCTCATC+GGG | + | chr1.2:17062499-17062518 | MS.gene070701:CDS | 45.0% | |
| TTGTCCAATGCAGCATGATG+GGG | - | chr1.2:17060365-17060384 | None:intergenic | 45.0% | |
| ! | AGGAAGTTATCGGTGTCTTC+AGG | - | chr1.2:17060907-17060926 | None:intergenic | 45.0% |
| ! | ATTGGATTTTCCCGATGAGG+AGG | - | chr1.2:17062512-17062531 | None:intergenic | 45.0% |
| ! | GCCGGATTTTGCGAAATCAA+CGG | - | chr1.2:17062909-17062928 | None:intergenic | 45.0% |
| ! | TCCATTGGATTTTCCCGATG+AGG | - | chr1.2:17062515-17062534 | None:intergenic | 45.0% |
| ! | TGTTCAGGAAGTGACTTGGA+TGG | + | chr1.2:17062449-17062468 | MS.gene070701:CDS | 45.0% |
| ! | TTCGGAACCTCGGTATTTTG+TGG | - | chr1.2:17060412-17060431 | None:intergenic | 45.0% |
| ! | TTTTCCCACAGAAAGGGAGA+AGG | + | chr1.2:17062102-17062121 | MS.gene070701:CDS | 45.0% |
| !! | GCCGTTGATTTCGCAAAATC+CGG | + | chr1.2:17062905-17062924 | MS.gene070701:CDS | 45.0% |
| AATCGGAAAGCTTTACCGCG+AGG | + | chr1.2:17063021-17063040 | MS.gene070701:CDS | 50.0% | |
| AATTGCGCGATAACTCAGCG+TGG | + | chr1.2:17061106-17061125 | MS.gene070701:CDS | 50.0% | |
| CCTTCTGGTGGAATCACCAT+GGG | - | chr1.2:17060526-17060545 | None:intergenic | 50.0% | |
| CTTCTGGTGGAATCACCATG+GGG | - | chr1.2:17060525-17060544 | None:intergenic | 50.0% | |
| GCACTCGACATGATGTCACA+AGG | + | chr1.2:17061687-17061706 | MS.gene070701:CDS | 50.0% | |
| GTGCAACATTCTTCACCTCG+CGG | - | chr1.2:17063039-17063058 | None:intergenic | 50.0% | |
| TCCTTCTGGTGGAATCACCA+TGG | - | chr1.2:17060527-17060546 | None:intergenic | 50.0% | |
| TGGATGTTTGCACCGAGAAC+TGG | + | chr1.2:17061126-17061145 | MS.gene070701:CDS | 50.0% | |
| TTCACCCCATCATGCTGCAT+TGG | + | chr1.2:17060358-17060377 | MS.gene070701:CDS | 50.0% | |
| ! | CCTGTGGTTAGTCCAGTTCT+CGG | - | chr1.2:17061141-17061160 | None:intergenic | 50.0% |
| ! | GAAGGGCTCATTGCCTTTTC+AGG | - | chr1.2:17062854-17062873 | None:intergenic | 50.0% |
| ! | GGCAAGTTGAATCCTTCTGG+TGG | - | chr1.2:17060538-17060557 | None:intergenic | 50.0% |
| CCCATGGTGATTCCACCAGA+AGG | + | chr1.2:17060523-17060542 | MS.gene070701:CDS | 55.0% | |
| CCGAGAACTGGACTAACCAC+AGG | + | chr1.2:17061138-17061157 | MS.gene070701:CDS | 55.0% | |
| GTCAGTTACGCAGTGCTCCT+CGG | + | chr1.2:17060260-17060279 | MS.gene070701:intron | 55.0% | |
| TCGATCCTTGACACCGAGTG+TGG | - | chr1.2:17061601-17061620 | None:intergenic | 55.0% | |
| TTTCGCAAAATCCGGCGTGC+CGG | + | chr1.2:17062913-17062932 | MS.gene070701:CDS | 55.0% | |
| !! | GTTGTCCACACTCGGTGTCA+AGG | + | chr1.2:17061593-17061612 | MS.gene070701:CDS | 55.0% |
| TGGTACTTCAGCCGGCACGC+CGG | - | chr1.2:17062927-17062946 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 17059718 | 17063660 | 17059718 | ID=MS.gene070701 |
| chr1.2 | mRNA | 17059718 | 17063660 | 17059718 | ID=MS.gene070701.t1;Parent=MS.gene070701 |
| chr1.2 | exon | 17059718 | 17060176 | 17059718 | ID=MS.gene070701.t1.exon1;Parent=MS.gene070701.t1 |
| chr1.2 | CDS | 17059718 | 17060176 | 17059718 | ID=cds.MS.gene070701.t1;Parent=MS.gene070701.t1 |
| chr1.2 | exon | 17060265 | 17062123 | 17060265 | ID=MS.gene070701.t1.exon2;Parent=MS.gene070701.t1 |
| chr1.2 | CDS | 17060265 | 17062123 | 17060265 | ID=cds.MS.gene070701.t1;Parent=MS.gene070701.t1 |
| chr1.2 | exon | 17062433 | 17062583 | 17062433 | ID=MS.gene070701.t1.exon3;Parent=MS.gene070701.t1 |
| chr1.2 | CDS | 17062433 | 17062583 | 17062433 | ID=cds.MS.gene070701.t1;Parent=MS.gene070701.t1 |
| chr1.2 | exon | 17062764 | 17063660 | 17062764 | ID=MS.gene070701.t1.exon4;Parent=MS.gene070701.t1 |
| chr1.2 | CDS | 17062764 | 17063660 | 17062764 | ID=cds.MS.gene070701.t1;Parent=MS.gene070701.t1 |
| Gene Sequence |
| Protein sequence |
