AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05894


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05894.t1 MTR_8g103030 98.635 293 4 0 1 293 1 293 0.0 593
MS.gene05894.t1 MTR_6g488150 60.993 282 58 5 23 293 14 254 2.67e-108 315
MS.gene05894.t1 MTR_2g101500 54.627 335 101 11 1 293 1 326 2.49e-104 307
MS.gene05894.t1 MTR_5g030710 51.274 314 103 10 12 293 40 335 2.81e-95 285
MS.gene05894.t1 MTR_8g067530 50.482 311 107 9 12 293 64 356 1.08e-90 273
MS.gene05894.t1 MTR_5g067350 47.205 322 105 8 12 293 51 347 1.39e-82 253
MS.gene05894.t1 MTR_1g080860 48.214 280 92 8 24 292 15 252 1.90e-72 223
MS.gene05894.t1 MTR_1g093240 47.636 275 95 6 23 293 7 236 4.12e-70 217
MS.gene05894.t1 MTR_7g096090 63.125 160 55 2 135 293 94 250 2.87e-66 207
MS.gene05894.t1 MTR_1g080860 46.667 270 91 8 24 282 15 242 7.92e-65 204
MS.gene05894.t1 MTR_1g070520 62.424 165 51 4 135 292 84 244 1.08e-64 203
MS.gene05894.t1 MTR_1g093240 46.008 263 93 6 23 281 7 224 1.50e-61 195
MS.gene05894.t1 MTR_6g488150 52.709 203 45 5 23 214 14 176 4.12e-56 179
MS.gene05894.t1 MTR_1g093240 42.798 243 90 6 23 261 7 204 1.54e-49 163
MS.gene05894.t1 MTR_1g070830 45.385 260 70 11 24 281 12 201 8.91e-49 161
MS.gene05894.t1 MTR_1g076270 47.826 184 67 5 98 281 24 178 3.83e-45 151
MS.gene05894.t1 MTR_1g093350 47.826 184 67 5 98 281 24 178 3.83e-45 151
MS.gene05894.t1 MTR_1g040675 41.473 258 75 9 24 281 1 182 5.85e-45 150
MS.gene05894.t1 MTR_1g069495 43.169 183 71 3 139 288 81 263 1.73e-37 134
MS.gene05894.t1 MTR_5g067350 38.272 243 89 7 12 214 51 272 6.20e-35 127
MS.gene05894.t1 MTR_1g040675 38.235 238 71 8 24 261 1 162 8.42e-35 124
MS.gene05894.t1 MTR_2g100780 42.442 172 76 5 136 284 92 263 1.20e-32 121
MS.gene05894.t1 MTR_4g011880 49.333 150 45 4 138 285 52 172 2.19e-32 118
MS.gene05894.t1 MTR_2g100780 42.945 163 72 4 136 277 92 254 2.43e-32 120
MS.gene05894.t1 MTR_2g102490 53.636 110 38 3 170 276 84 183 2.48e-31 116
MS.gene05894.t1 MTR_8g014520 39.241 158 80 2 136 277 103 260 4.96e-29 112
MS.gene05894.t1 MTR_8g014520 39.241 158 80 2 136 277 103 260 5.33e-29 112
MS.gene05894.t1 MTR_3g106850 30.921 152 79 4 131 277 79 209 2.45e-19 84.7
MS.gene05894.t1 MTR_4g124300 35.811 148 63 5 135 276 61 182 5.12e-18 80.5
MS.gene05894.t1 MTR_7g110790 36.090 133 59 4 146 274 45 155 1.97e-16 75.5
MS.gene05894.t1 MTR_1g085750 37.607 117 57 2 165 281 76 176 2.82e-16 75.5
MS.gene05894.t1 MTR_4g115075 30.769 143 62 3 141 275 93 206 4.40e-14 70.1
MS.gene05894.t1 MTR_1g109510 28.571 161 85 4 114 274 38 168 9.88e-12 62.8
MS.gene05894.t1 MTR_1g085750 36.082 97 47 1 165 261 76 157 3.99e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05894.t1 AT4G29080 55.864 324 91 11 1 293 3 305 8.04e-102 300
MS.gene05894.t1 AT2G22670 48.993 298 97 7 24 292 47 318 2.85e-84 256
MS.gene05894.t1 AT2G22670 48.993 298 97 7 24 292 47 318 2.85e-84 256
MS.gene05894.t1 AT2G22670 48.993 298 97 7 24 292 64 335 3.19e-84 256
MS.gene05894.t1 AT2G22670 48.322 298 97 8 24 292 47 316 5.02e-81 248
MS.gene05894.t1 AT2G22670 48.322 298 97 8 24 292 47 316 5.02e-81 248
MS.gene05894.t1 AT5G65670 46.128 297 110 6 24 292 61 335 6.07e-74 230
MS.gene05894.t1 AT5G65670 45.819 299 110 7 24 292 61 337 4.98e-72 225
MS.gene05894.t1 AT4G14550 48.913 276 87 9 24 293 1 228 5.46e-70 216
MS.gene05894.t1 AT3G04730 53.778 225 76 5 93 292 14 235 1.91e-69 215
MS.gene05894.t1 AT3G23050 49.301 286 81 12 24 293 6 243 1.61e-68 213
MS.gene05894.t1 AT1G04250 45.956 272 100 6 21 292 4 228 1.51e-65 205
MS.gene05894.t1 AT4G14550 47.727 264 84 9 24 281 1 216 7.32e-63 198
MS.gene05894.t1 AT4G14550 44.444 243 81 9 24 260 1 195 1.22e-49 163
MS.gene05894.t1 AT3G23050 45.059 253 76 11 24 261 6 210 1.03e-48 161
MS.gene05894.t1 AT1G04240 41.313 259 75 10 24 282 5 186 9.95e-47 155
MS.gene05894.t1 AT1G04240 41.473 258 74 10 24 281 105 285 2.87e-45 155
MS.gene05894.t1 AT5G43700 52.667 150 47 6 133 282 57 182 2.44e-42 144
MS.gene05894.t1 AT3G23030 48.993 149 45 2 133 281 53 170 4.11e-39 135
MS.gene05894.t1 AT2G33310 44.068 177 69 4 133 287 69 237 6.25e-39 137
MS.gene05894.t1 AT3G15540 37.313 268 91 9 23 288 5 197 1.06e-38 135
MS.gene05894.t1 AT3G23030 48.993 149 45 2 133 281 140 257 1.79e-38 136
MS.gene05894.t1 AT1G04550 45.946 185 65 7 133 293 63 236 4.79e-38 134
MS.gene05894.t1 AT2G33310 44.068 177 68 5 133 287 69 236 2.17e-37 133
MS.gene05894.t1 AT2G33310 44.068 177 68 5 133 287 69 236 2.17e-37 133
MS.gene05894.t1 AT1G52830 36.726 226 100 6 56 281 2 184 1.04e-36 129
MS.gene05894.t1 AT4G14560 49.020 153 49 5 126 278 41 164 3.00e-35 125
MS.gene05894.t1 AT4G28640 44.910 167 70 4 133 282 81 242 7.41e-35 126
MS.gene05894.t1 AT4G28640 44.848 165 69 4 133 280 81 240 1.17e-34 126
MS.gene05894.t1 AT3G16500 40.964 166 75 4 130 277 92 252 2.24e-34 126
MS.gene05894.t1 AT3G16500 40.964 166 75 4 130 277 92 252 3.01e-34 125
MS.gene05894.t1 AT1G15580 44.366 142 49 2 135 276 48 159 4.69e-34 122
MS.gene05894.t1 AT4G28640 44.848 165 69 4 133 280 81 240 1.43e-33 124
MS.gene05894.t1 AT1G04100 41.916 167 68 4 142 281 95 259 6.05e-31 117
MS.gene05894.t1 AT5G25890 36.250 160 74 3 125 284 39 170 1.25e-29 110
MS.gene05894.t1 AT1G51950 42.683 164 67 6 136 277 92 250 3.91e-29 112
MS.gene05894.t1 AT4G14550 40.513 195 65 8 24 212 1 150 3.96e-28 107
MS.gene05894.t1 AT3G23050 41.429 210 60 11 24 218 6 167 1.84e-27 105
MS.gene05894.t1 AT3G17600 37.931 145 64 5 130 274 36 154 9.61e-23 92.4
MS.gene05894.t1 AT2G46990 39.423 104 47 1 173 276 85 172 7.18e-19 82.4
MS.gene05894.t1 AT3G62100 38.393 112 48 3 169 275 74 169 1.11e-18 82.0
MS.gene05894.t1 AT2G46990 40.449 89 37 1 173 261 85 157 2.51e-14 69.7
MS.gene05894.t1 AT3G62100 37.755 98 40 3 169 261 74 155 7.19e-14 68.2
MS.gene05894.t1 AT4G32280 35.294 102 45 2 173 274 118 198 4.25e-13 67.4
MS.gene05894.t1 AT4G32280 35.294 102 45 2 173 274 160 240 1.17e-12 67.0
MS.gene05894.t1 AT1G15050 31.579 133 74 2 147 279 35 150 5.89e-12 63.2
MS.gene05894.t1 AT1G15050 31.579 133 74 2 147 279 67 182 1.31e-11 62.8
MS.gene05894.t1 AT2G01200 33.043 115 60 2 165 279 91 188 1.33e-11 62.8
MS.gene05894.t1 AT2G01200 33.043 115 60 2 165 279 91 188 1.33e-11 62.8

Find 81 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCAATGCTTCTCTCTT+TGG 0.185471 4.4:-3246123 None:intergenic
CTCTCTTTGGTTTCCATTGA+AGG 0.229858 4.4:-3246110 None:intergenic
TCACCACCACCTTTAGCTTT+AGG 0.284997 4.4:-3246350 None:intergenic
GCTATTACTGATGGAGGTTC+TGG 0.289483 4.4:+3246260 MS.gene05894:CDS
AGATCCACTTTCCTCAAGTA+TGG 0.291849 4.4:-3247608 None:intergenic
GGCCTCCAATCCGATCTTTC+CGG 0.299985 4.4:+3247492 MS.gene05894:CDS
GAGTCACCAGAGAGAGAAAA+TGG 0.324653 4.4:+3246188 MS.gene05894:CDS
GCCTCAGTTCAGTAGCTTTG+AGG 0.337674 4.4:-3246148 None:intergenic
CCAGGTCAATGTGGCTCATA+TGG 0.347339 4.4:+3248319 MS.gene05894:intron
GTGAAACCATTGAGTTCTTC+CGG 0.369117 4.4:-3247511 None:intergenic
GTGCCAGTGGAGCAAGGTTA+TGG 0.387464 4.4:+3246080 MS.gene05894:CDS
ATGAAGAGTTCTGAAGCAAT+TGG 0.391710 4.4:+3248672 MS.gene05894:CDS
AGCATCAGAGAAACCCCTTT+TGG 0.393944 4.4:-3246240 None:intergenic
TTGTTATCATGCAAAGGCTT+TGG 0.395919 4.4:-3246437 None:intergenic
TTCTCTGATGCTATTACTGA+TGG 0.411709 4.4:+3246251 MS.gene05894:CDS
TGGTGGTGTGCTTAAGAGTT+TGG 0.414516 4.4:+3246208 MS.gene05894:CDS
TTATGGAGAGGTTCCTTCAA+TGG 0.424280 4.4:+3246097 MS.gene05894:CDS
CTGATGGAGGTTCTGGGAAG+TGG 0.429765 4.4:+3246267 MS.gene05894:CDS
CTCTCTGGTGACTCTGAGCC+TGG 0.432328 4.4:-3246179 None:intergenic
CCGAGTCTTGCAAGAGGTTG+AGG 0.432404 4.4:+3248646 MS.gene05894:CDS
ATCACCATCCTTGTCTTCAT+AGG 0.451715 4.4:-3248416 None:intergenic
ACAACAACTGAAGCAGAGAA+AGG 0.456026 4.4:-3246392 None:intergenic
AGATTGGTGGATCTCCTTCA+TGG 0.457760 4.4:+3248376 MS.gene05894:CDS
TCTCCATAACCTTGCTCCAC+TGG 0.462347 4.4:-3246083 None:intergenic
CGAATCAGGGCGCAAGTTGT+GGG 0.462809 4.4:+3247467 MS.gene05894:intron
CTATTACTGATGGAGGTTCT+GGG 0.466403 4.4:+3246261 MS.gene05894:CDS
TGCTAGTTGGTGATGTTCCA+TGG 0.467311 4.4:+3248443 MS.gene05894:CDS
TTTGGTGTCTGGTGCCAAAA+GGG 0.469379 4.4:+3246226 MS.gene05894:CDS
TACATATATGCATTCAGACT+TGG 0.476242 4.4:-3247564 None:intergenic
TGGAAATGGTGGATCTGAAG+TGG 0.482511 4.4:+3246298 MS.gene05894:CDS
GCGAATCAGGGCGCAAGTTG+TGG 0.486260 4.4:+3247466 MS.gene05894:intron
GTGCTTAAGAGTTTGGTGTC+TGG 0.488896 4.4:+3246215 MS.gene05894:CDS
TGAAGAGTTCTGAAGCAATT+GGG 0.489200 4.4:+3248673 MS.gene05894:CDS
GTTTGGTGTCTGGTGCCAAA+AGG 0.490914 4.4:+3246225 MS.gene05894:CDS
GAACTGAGGCTAGGGTTACC+AGG 0.498587 4.4:+3246161 MS.gene05894:CDS
AAATCTAAGTGAAAGTAGAT+TGG 0.505003 4.4:+3248360 MS.gene05894:CDS
TTGTTCTCTCCTAAAGCTAA+AGG 0.505328 4.4:+3246341 MS.gene05894:CDS
TGATGGAGGTTCTGGGAAGT+GGG 0.506160 4.4:+3246268 MS.gene05894:CDS
GAAACCAAAGAGAGAAGCAT+TGG 0.506436 4.4:+3246119 MS.gene05894:CDS
ATCTTTCCGGAAGAACTCAA+TGG 0.508429 4.4:+3247505 MS.gene05894:CDS
TTGAGTTCTTCCGGAAAGAT+CGG 0.510793 4.4:-3247502 None:intergenic
ATGAAGACAAGGATGGTGAT+TGG 0.522716 4.4:+3248419 MS.gene05894:CDS
CAACAACTGAAGCAGAGAAA+GGG 0.523720 4.4:-3246391 None:intergenic
GGAAATGGTGGATCTGAAGT+GGG 0.526580 4.4:+3246299 MS.gene05894:CDS
TCTGATGCTATTACTGATGG+AGG 0.531086 4.4:+3246254 MS.gene05894:CDS
TTCCGGAAAGATCGGATTGG+AGG 0.531139 4.4:-3247494 None:intergenic
TCCTGCAGCACCTCGAGCCA+TGG 0.531399 4.4:+3248778 MS.gene05894:intron
AAGAAATCTTACTTTGCAGA+AGG 0.533764 4.4:-3246476 None:intergenic
TTGAGGAAAGTGGATCTGAA+TGG 0.538432 4.4:+3247614 MS.gene05894:CDS
TATGTAAAAGTCAGCATGGA+AGG 0.544619 4.4:+3247581 MS.gene05894:CDS
AAATCTTACTTTGCAGAAGG+AGG 0.546311 4.4:-3246473 None:intergenic
TCTAAGTGAAAGTAGATTGG+TGG 0.547921 4.4:+3248363 MS.gene05894:CDS
AAAGCTACTGAACTGAGGCT+AGG 0.551933 4.4:+3246152 MS.gene05894:CDS
AGTTCTGAAGCAATTGGGCT+AGG 0.552508 4.4:+3248678 MS.gene05894:CDS
TGCTCCATACTTGAGGAAAG+TGG 0.552637 4.4:+3247604 MS.gene05894:CDS
AAGCTACTGAACTGAGGCTA+GGG 0.557212 4.4:+3246153 MS.gene05894:CDS
TGTGGTTTGTTATCATGCAA+AGG 0.558132 4.4:-3246443 None:intergenic
GAAGTGGGGTTGTGTAAAGA+TGG 0.559129 4.4:+3246314 MS.gene05894:CDS
TTCTTCCGGAAAGATCGGAT+TGG 0.561734 4.4:-3247497 None:intergenic
TTGGTGTCTGGTGCCAAAAG+GGG 0.565847 4.4:+3246227 MS.gene05894:CDS
AGAAAATAGACGTACTCCCA+TGG 0.566126 4.4:-3248460 None:intergenic
CATATATGTAAAAGTCAGCA+TGG 0.572072 4.4:+3247577 MS.gene05894:CDS
GCTAGTTGGTGATGTTCCAT+GGG 0.572324 4.4:+3248444 MS.gene05894:CDS
TCTCCTAAAGCTAAAGGTGG+TGG 0.583056 4.4:+3246347 MS.gene05894:CDS
CCTCAACCTCTTGCAAGACT+CGG 0.585897 4.4:-3248646 None:intergenic
TTACATTTCTCCATGGCTCG+AGG 0.588053 4.4:-3248788 None:intergenic
TCAGGGCGCAAGTTGTGGGA+TGG 0.592117 4.4:+3247471 MS.gene05894:intron
GCACATATTCTGAACCATGA+AGG 0.604244 4.4:-3248390 None:intergenic
GATGGTGATTGGATGCTAGT+TGG 0.610602 4.4:+3248430 MS.gene05894:CDS
TGGAAGGTGCTCCATACTTG+AGG 0.612400 4.4:+3247597 MS.gene05894:CDS
GCAGAAGGAGGAGAAACATG+TGG 0.623815 4.4:-3246461 None:intergenic
ATGTCTGTGCCAGTGGAGCA+AGG 0.624059 4.4:+3246074 MS.gene05894:CDS
TTCTCTCCTAAAGCTAAAGG+TGG 0.652446 4.4:+3246344 MS.gene05894:CDS
TTGACAAATCCAGGTCAATG+TGG 0.662027 4.4:+3248310 MS.gene05894:intron
TGTGCTTACCTATGAAGACA+AGG 0.670147 4.4:+3248408 MS.gene05894:CDS
TGTTCACCGAGTCTTGCAAG+AGG 0.674237 4.4:+3248640 MS.gene05894:CDS
GAAATGGTGGATCTGAAGTG+GGG 0.680430 4.4:+3246300 MS.gene05894:CDS
CTTACCTATGAAGACAAGGA+TGG 0.683773 4.4:+3248412 MS.gene05894:CDS
AGTGGAGCAAGGTTATGGAG+AGG 0.703860 4.4:+3246085 MS.gene05894:CDS
TCACCAGAGAGAGAAAATGG+TGG 0.713194 4.4:+3246191 MS.gene05894:CDS
ACCTCAAAGCTACTGAACTG+AGG 0.714271 4.4:+3246147 MS.gene05894:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATTTAAGTTTAACATT+TGG - chr4.4:3247960-3247979 None:intergenic 15.0%
!!! GATGTTATTTTTGTTATTTT+AGG + chr4.4:3248616-3248635 MS.gene05894:intron 15.0%
!!! GATTTTAATATAACAAACAT+TGG - chr4.4:3248709-3248728 None:intergenic 15.0%
!!! TCATTTTATTTAAGCAAAAA+AGG - chr4.4:3248273-3248292 None:intergenic 15.0%
!! AAGTAAGATTTCTTCTTATT+TGG + chr4.4:3246485-3246504 MS.gene05894:intron 20.0%
!!! ACTTGTTGTATCTTTTATTA+TGG - chr4.4:3246857-3246876 None:intergenic 20.0%
!!! ATTGATAGTTAGACTTATTT+TGG + chr4.4:3248539-3248558 MS.gene05894:intron 20.0%
!!! TGATTTCTTTTTTCTCAATA+CGG + chr4.4:3247436-3247455 MS.gene05894:intron 20.0%
! AAATCTAAGTGAAAGTAGAT+TGG + chr4.4:3248360-3248379 MS.gene05894:CDS 25.0%
! AACATGCAGAAGAAAATTTA+AGG - chr4.4:3247190-3247209 None:intergenic 25.0%
! AGATTTATATTATCATGCGT+TGG - chr4.4:3247366-3247385 None:intergenic 25.0%
! CGATCATAAATTCAAAACTA+AGG - chr4.4:3247403-3247422 None:intergenic 25.0%
! GCAAAAATATTTGAAAATCG+AGG + chr4.4:3247849-3247868 MS.gene05894:intron 25.0%
! TGACATGAATTTATGAACAT+CGG + chr4.4:3248034-3248053 MS.gene05894:intron 25.0%
! TTGATTCTAACATTGTTCAT+AGG - chr4.4:3248565-3248584 None:intergenic 25.0%
!! TCTATTGTTGGTTGAAATTA+TGG + chr4.4:3248128-3248147 MS.gene05894:intron 25.0%
!!! ACTTTTTTCACAAGCTATTA+TGG + chr4.4:3246912-3246931 MS.gene05894:intron 25.0%
!!! AGTTTTGAATTTATGATCGT+TGG + chr4.4:3247404-3247423 MS.gene05894:intron 25.0%
!!! GATACCTTCATATTTTTTGT+CGG + chr4.4:3248737-3248756 MS.gene05894:intron 25.0%
!!! TTCACATAGATAGTTACTTT+TGG + chr4.4:3247159-3247178 MS.gene05894:intron 25.0%
AAGAAATCTTACTTTGCAGA+AGG - chr4.4:3246479-3246498 None:intergenic 30.0%
AGATATTTGTGATCATGCAT+CGG - chr4.4:3247762-3247781 None:intergenic 30.0%
CATATATGTAAAAGTCAGCA+TGG + chr4.4:3247577-3247596 MS.gene05894:CDS 30.0%
GATTCCGACAAAAAATATGA+AGG - chr4.4:3248744-3248763 None:intergenic 30.0%
TACATATATGCATTCAGACT+TGG - chr4.4:3247567-3247586 None:intergenic 30.0%
TATGTGCTCTAGTAAATTTC+AGG + chr4.4:3247110-3247129 MS.gene05894:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG + chr4.4:3247014-3247033 MS.gene05894:intron 30.0%
TCAACCAACAATAGAGAAAA+TGG - chr4.4:3248123-3248142 None:intergenic 30.0%
TGCATGTATTTATATGTCAC+AGG + chr4.4:3248174-3248193 MS.gene05894:intron 30.0%
! GTTGAATCTGATGTTTCTTT+TGG + chr4.4:3246681-3246700 MS.gene05894:intron 30.0%
! TATATTCTTATGTTAGCCTC+TGG + chr4.4:3247057-3247076 MS.gene05894:intron 30.0%
! TCAACCATTTTCTCTATTGT+TGG + chr4.4:3248116-3248135 MS.gene05894:intron 30.0%
!! ATGTTTTTGTTGACAAATCC+AGG + chr4.4:3248301-3248320 MS.gene05894:intron 30.0%
!!! AATCACTTTTGAGACTGTTT+GGG - chr4.4:3246978-3246997 None:intergenic 30.0%
!!! GAATGGTTTTAGCTCTTATA+GGG + chr4.4:3247631-3247650 MS.gene05894:CDS 30.0%
!!! TAATCACTTTTGAGACTGTT+TGG - chr4.4:3246979-3246998 None:intergenic 30.0%
!!! TGAATGGTTTTAGCTCTTAT+AGG + chr4.4:3247630-3247649 MS.gene05894:CDS 30.0%
AAATCTTACTTTGCAGAAGG+AGG - chr4.4:3246476-3246495 None:intergenic 35.0%
ACATCAAGACACACAGATAA+TGG - chr4.4:3247734-3247753 None:intergenic 35.0%
ATAATTAGCAACAACCACCA+AGG - chr4.4:3247040-3247059 None:intergenic 35.0%
ATCTTCATTCTCAACCATGT+TGG - chr4.4:3248221-3248240 None:intergenic 35.0%
CATCAAGACACACAGATAAT+GGG - chr4.4:3247733-3247752 None:intergenic 35.0%
GCATGATCACAAATATCTCT+CGG + chr4.4:3247764-3247783 MS.gene05894:intron 35.0%
TATGTAAAAGTCAGCATGGA+AGG + chr4.4:3247581-3247600 MS.gene05894:CDS 35.0%
TCTAAGTGAAAGTAGATTGG+TGG + chr4.4:3248363-3248382 MS.gene05894:CDS 35.0%
TTCTCTGATGCTATTACTGA+TGG + chr4.4:3246251-3246270 MS.gene05894:CDS 35.0%
TTGTTATCATGCAAAGGCTT+TGG - chr4.4:3246440-3246459 None:intergenic 35.0%
TTGTTCTCTCCTAAAGCTAA+AGG + chr4.4:3246341-3246360 MS.gene05894:CDS 35.0%
! ATACGGTTTTTATGCGAATC+AGG + chr4.4:3247453-3247472 MS.gene05894:intron 35.0%
! ATGGTTGAAAGAGAGTGTAT+TGG - chr4.4:3248104-3248123 None:intergenic 35.0%
! CAAAGGTATGACTACTGTAT+AGG - chr4.4:3248246-3248265 None:intergenic 35.0%
! GAAAGAGAGTGTATTGGTAA+CGG - chr4.4:3248098-3248117 None:intergenic 35.0%
! TAAGCAAAAAAGGCATGCAA+AGG - chr4.4:3248263-3248282 None:intergenic 35.0%
! TACGGTTTTTATGCGAATCA+GGG + chr4.4:3247454-3247473 MS.gene05894:intron 35.0%
! TGTGCTTTGTTGATTGATGT+TGG + chr4.4:3246546-3246565 MS.gene05894:intron 35.0%
!! ATGAAGAGTTCTGAAGCAAT+TGG + chr4.4:3248672-3248691 MS.gene05894:CDS 35.0%
!! TGAAGAGTTCTGAAGCAATT+GGG + chr4.4:3248673-3248692 MS.gene05894:CDS 35.0%
!! TGTGGTTTGTTATCATGCAA+AGG - chr4.4:3246446-3246465 None:intergenic 35.0%
AAATCGAGGTGTGTCTTGAA+TGG + chr4.4:3247863-3247882 MS.gene05894:intron 40.0%
AAGACATGGAAAAGGCTAAC+TGG - chr4.4:3247296-3247315 None:intergenic 40.0%
AATATCTCTCGGTGATGTGA+TGG + chr4.4:3247775-3247794 MS.gene05894:intron 40.0%
ACAACAACTGAAGCAGAGAA+AGG - chr4.4:3246395-3246414 None:intergenic 40.0%
ACTGGACAAAATCAAATCCC+AGG - chr4.4:3247278-3247297 None:intergenic 40.0%
AGAAAATAGACGTACTCCCA+TGG - chr4.4:3248463-3248482 None:intergenic 40.0%
AGATCCACTTTCCTCAAGTA+TGG - chr4.4:3247611-3247630 None:intergenic 40.0%
AGCATCAGAAGACATGGAAA+AGG - chr4.4:3247304-3247323 None:intergenic 40.0%
ATCACCATCCTTGTCTTCAT+AGG - chr4.4:3248419-3248438 None:intergenic 40.0%
ATCTTTCCGGAAGAACTCAA+TGG + chr4.4:3247505-3247524 MS.gene05894:CDS 40.0%
ATGAAGACAAGGATGGTGAT+TGG + chr4.4:3248419-3248438 MS.gene05894:CDS 40.0%
CAAACCAATGCTTCTCTCTT+TGG - chr4.4:3246126-3246145 None:intergenic 40.0%
CAACAACTGAAGCAGAGAAA+GGG - chr4.4:3246394-3246413 None:intergenic 40.0%
CAACTGTACTGTCGAAGTAT+AGG - chr4.4:3248010-3248029 None:intergenic 40.0%
CTATTACTGATGGAGGTTCT+GGG + chr4.4:3246261-3246280 MS.gene05894:CDS 40.0%
CTGGACAAAATCAAATCCCA+GGG - chr4.4:3247277-3247296 None:intergenic 40.0%
CTTACCTATGAAGACAAGGA+TGG + chr4.4:3248412-3248431 MS.gene05894:CDS 40.0%
GCACATATTCTGAACCATGA+AGG - chr4.4:3248393-3248412 None:intergenic 40.0%
GTGAAACCATTGAGTTCTTC+CGG - chr4.4:3247514-3247533 None:intergenic 40.0%
TCTGATGCTATTACTGATGG+AGG + chr4.4:3246254-3246273 MS.gene05894:CDS 40.0%
TGTGCTTACCTATGAAGACA+AGG + chr4.4:3248408-3248427 MS.gene05894:CDS 40.0%
TTATGGAGAGGTTCCTTCAA+TGG + chr4.4:3246097-3246116 MS.gene05894:CDS 40.0%
TTCTCTCCTAAAGCTAAAGG+TGG + chr4.4:3246344-3246363 MS.gene05894:CDS 40.0%
TTGACAAATCCAGGTCAATG+TGG + chr4.4:3248310-3248329 MS.gene05894:intron 40.0%
TTGAGGAAAGTGGATCTGAA+TGG + chr4.4:3247614-3247633 MS.gene05894:CDS 40.0%
TTGAGTTCTTCCGGAAAGAT+CGG - chr4.4:3247505-3247524 None:intergenic 40.0%
! CTCTCTTTGGTTTCCATTGA+AGG - chr4.4:3246113-3246132 None:intergenic 40.0%
! GAAACCAAAGAGAGAAGCAT+TGG + chr4.4:3246119-3246138 MS.gene05894:CDS 40.0%
! GCATCAGCATCATTCTTTTG+AGG - chr4.4:3247539-3247558 None:intergenic 40.0%
! GCGACTTTTACATTTCTCCA+TGG - chr4.4:3248798-3248817 None:intergenic 40.0%
! TATGTCACAGGTTCTGATTG+TGG + chr4.4:3248186-3248205 MS.gene05894:intron 40.0%
!! AAGCAGAGAAAGGGTTTTGT+TGG - chr4.4:3246385-3246404 None:intergenic 40.0%
!! AAGTGGGTTTTGTCTGGAAA+TGG + chr4.4:3246284-3246303 MS.gene05894:CDS 40.0%
AAAGCTACTGAACTGAGGCT+AGG + chr4.4:3246152-3246171 MS.gene05894:CDS 45.0%
AAATCCCAGGGCATACACAA+GGG - chr4.4:3247265-3247284 None:intergenic 45.0%
AACAACCACCAAGGCCTATT+TGG - chr4.4:3247031-3247050 None:intergenic 45.0%
AAGCCAATCCAAATAGGCCT+TGG + chr4.4:3247020-3247039 MS.gene05894:intron 45.0%
AAGCTACTGAACTGAGGCTA+GGG + chr4.4:3246153-3246172 MS.gene05894:CDS 45.0%
ACCTCAAAGCTACTGAACTG+AGG + chr4.4:3246147-3246166 MS.gene05894:CDS 45.0%
CCATGTCTTCTGATGCTGAA+AGG + chr4.4:3247307-3247326 MS.gene05894:intron 45.0%
CCTTTCAGCATCAGAAGACA+TGG - chr4.4:3247310-3247329 None:intergenic 45.0%
GAAGTGGGGTTGTGTAAAGA+TGG + chr4.4:3246314-3246333 MS.gene05894:CDS 45.0%
GAGTCACCAGAGAGAGAAAA+TGG + chr4.4:3246188-3246207 MS.gene05894:CDS 45.0%
GATGGTGATTGGATGCTAGT+TGG + chr4.4:3248430-3248449 MS.gene05894:CDS 45.0%
GCTATTACTGATGGAGGTTC+TGG + chr4.4:3246260-3246279 MS.gene05894:CDS 45.0%
TCACCAGAGAGAGAAAATGG+TGG + chr4.4:3246191-3246210 MS.gene05894:CDS 45.0%
TCTCCTAAAGCTAAAGGTGG+TGG + chr4.4:3246347-3246366 MS.gene05894:CDS 45.0%
TGCTCCATACTTGAGGAAAG+TGG + chr4.4:3247604-3247623 MS.gene05894:CDS 45.0%
TTACATTTCTCCATGGCTCG+AGG - chr4.4:3248791-3248810 None:intergenic 45.0%
TTAGCCTCTGGTGTAAAAGC+TGG + chr4.4:3247069-3247088 MS.gene05894:intron 45.0%
TTCTCAACCATGTTGGCACT+TGG - chr4.4:3248214-3248233 None:intergenic 45.0%
TTCTTCCGGAAAGATCGGAT+TGG - chr4.4:3247500-3247519 None:intergenic 45.0%
! ACACCACCATTTTCTCTCTC+TGG - chr4.4:3246197-3246216 None:intergenic 45.0%
! AGATTGGTGGATCTCCTTCA+TGG + chr4.4:3248376-3248395 MS.gene05894:CDS 45.0%
! AGCATCAGAGAAACCCCTTT+TGG - chr4.4:3246243-3246262 None:intergenic 45.0%
! TGGTGGTGTGCTTAAGAGTT+TGG + chr4.4:3246208-3246227 MS.gene05894:CDS 45.0%
!! ACTCACTTGTTGATTCGCAC+TGG + chr4.4:3246753-3246772 MS.gene05894:intron 45.0%
!! ACTTGTTGATTCGCACTGGT+TGG + chr4.4:3246757-3246776 MS.gene05894:intron 45.0%
!! AGTTCTGAAGCAATTGGGCT+AGG + chr4.4:3248678-3248697 MS.gene05894:CDS 45.0%
!! GAAATGGTGGATCTGAAGTG+GGG + chr4.4:3246300-3246319 MS.gene05894:CDS 45.0%
!! GCTAGTTGGTGATGTTCCAT+GGG + chr4.4:3248444-3248463 MS.gene05894:CDS 45.0%
!! GGAAATGGTGGATCTGAAGT+GGG + chr4.4:3246299-3246318 MS.gene05894:CDS 45.0%
!! GTGCTTAAGAGTTTGGTGTC+TGG + chr4.4:3246215-3246234 MS.gene05894:CDS 45.0%
!! TCACCACCACCTTTAGCTTT+AGG - chr4.4:3246353-3246372 None:intergenic 45.0%
!! TGCTAGTTGGTGATGTTCCA+TGG + chr4.4:3248443-3248462 MS.gene05894:CDS 45.0%
!! TGGAAATGGTGGATCTGAAG+TGG + chr4.4:3246298-3246317 MS.gene05894:CDS 45.0%
!! TGGGTTTTGTCTGGAAATGG+TGG + chr4.4:3246287-3246306 MS.gene05894:CDS 45.0%
!! TTTGGTGTCTGGTGCCAAAA+GGG + chr4.4:3246226-3246245 MS.gene05894:CDS 45.0%
AGTGGAGCAAGGTTATGGAG+AGG + chr4.4:3246085-3246104 MS.gene05894:CDS 50.0%
CAAATCCCAGGGCATACACA+AGG - chr4.4:3247266-3247285 None:intergenic 50.0%
CCAATCCAAATAGGCCTTGG+TGG + chr4.4:3247023-3247042 MS.gene05894:intron 50.0%
CCACCAAGGCCTATTTGGAT+TGG - chr4.4:3247026-3247045 None:intergenic 50.0%
CCAGGTCAATGTGGCTCATA+TGG + chr4.4:3248319-3248338 MS.gene05894:intron 50.0%
CCATATGAGCCACATTGACC+TGG - chr4.4:3248322-3248341 None:intergenic 50.0%
CCTCAACCTCTTGCAAGACT+CGG - chr4.4:3248649-3248668 None:intergenic 50.0%
GCAGAAGGAGGAGAAACATG+TGG - chr4.4:3246464-3246483 None:intergenic 50.0%
TCTCCATAACCTTGCTCCAC+TGG - chr4.4:3246086-3246105 None:intergenic 50.0%
TGTTCACCGAGTCTTGCAAG+AGG + chr4.4:3248640-3248659 MS.gene05894:CDS 50.0%
! AACGCCAGCTTTTACACCAG+AGG - chr4.4:3247076-3247095 None:intergenic 50.0%
! GCCTCAGTTCAGTAGCTTTG+AGG - chr4.4:3246151-3246170 None:intergenic 50.0%
! TTCCGGAAAGATCGGATTGG+AGG - chr4.4:3247497-3247516 None:intergenic 50.0%
! TTGGTGTCTGGTGCCAAAAG+GGG + chr4.4:3246227-3246246 MS.gene05894:CDS 50.0%
!! GTTTGGTGTCTGGTGCCAAA+AGG + chr4.4:3246225-3246244 MS.gene05894:CDS 50.0%
!! TCTGGGAAGTGGGTTTTGTC+TGG + chr4.4:3246278-3246297 MS.gene05894:CDS 50.0%
!! TGATGGAGGTTCTGGGAAGT+GGG + chr4.4:3246268-3246287 MS.gene05894:CDS 50.0%
!! TGGAAGGTGCTCCATACTTG+AGG + chr4.4:3247597-3247616 MS.gene05894:CDS 50.0%
ATGTCTGTGCCAGTGGAGCA+AGG + chr4.4:3246074-3246093 MS.gene05894:CDS 55.0%
CCGAGTCTTGCAAGAGGTTG+AGG + chr4.4:3248646-3248665 MS.gene05894:CDS 55.0%
CGAATCAGGGCGCAAGTTGT+GGG + chr4.4:3247467-3247486 MS.gene05894:intron 55.0%
GAACTGAGGCTAGGGTTACC+AGG + chr4.4:3246161-3246180 MS.gene05894:CDS 55.0%
GGCCTCCAATCCGATCTTTC+CGG + chr4.4:3247492-3247511 MS.gene05894:CDS 55.0%
GTGCCAGTGGAGCAAGGTTA+TGG + chr4.4:3246080-3246099 MS.gene05894:CDS 55.0%
TGTGCCCTTGTGTATGCCCT+GGG + chr4.4:3247258-3247277 MS.gene05894:intron 55.0%
TTGTGCCCTTGTGTATGCCC+TGG + chr4.4:3247257-3247276 MS.gene05894:intron 55.0%
! TGTGGTGCCAAGTGCCAACA+TGG + chr4.4:3248204-3248223 MS.gene05894:intron 55.0%
!! CTGATGGAGGTTCTGGGAAG+TGG + chr4.4:3246267-3246286 MS.gene05894:CDS 55.0%
CTCTCTGGTGACTCTGAGCC+TGG - chr4.4:3246182-3246201 None:intergenic 60.0%
GCGAATCAGGGCGCAAGTTG+TGG + chr4.4:3247466-3247485 MS.gene05894:intron 60.0%
TCAGGGCGCAAGTTGTGGGA+TGG + chr4.4:3247471-3247490 MS.gene05894:intron 60.0%
TCCTGCAGCACCTCGAGCCA+TGG + chr4.4:3248778-3248797 MS.gene05894:intron 65.0%
!! TCCATGGCTCGAGGTGCTGC+AGG - chr4.4:3248782-3248801 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 3246074 3248823 3246074 ID=MS.gene05894
chr4.4 mRNA 3246074 3248823 3246074 ID=MS.gene05894.t1;Parent=MS.gene05894
chr4.4 exon 3246074 3246486 3246074 ID=MS.gene05894.t1.exon1;Parent=MS.gene05894.t1
chr4.4 CDS 3246074 3246486 3246074 ID=cds.MS.gene05894.t1;Parent=MS.gene05894.t1
chr4.4 exon 3247475 3247698 3247475 ID=MS.gene05894.t1.exon2;Parent=MS.gene05894.t1
chr4.4 CDS 3247475 3247698 3247475 ID=cds.MS.gene05894.t1;Parent=MS.gene05894.t1
chr4.4 exon 3248323 3248467 3248323 ID=MS.gene05894.t1.exon3;Parent=MS.gene05894.t1
chr4.4 CDS 3248323 3248467 3248323 ID=cds.MS.gene05894.t1;Parent=MS.gene05894.t1
chr4.4 exon 3248638 3248699 3248638 ID=MS.gene05894.t1.exon4;Parent=MS.gene05894.t1
chr4.4 CDS 3248638 3248699 3248638 ID=cds.MS.gene05894.t1;Parent=MS.gene05894.t1
chr4.4 exon 3248786 3248823 3248786 ID=MS.gene05894.t1.exon5;Parent=MS.gene05894.t1
chr4.4 CDS 3248786 3248823 3248786 ID=cds.MS.gene05894.t1;Parent=MS.gene05894.t1
Gene Sequence

>MS.gene05894

ATGTCTGTGCCAGTGGAGCAAGGTTATGGAGAGGTTCCTTCAATGGAAACCAAAGAGAGAAGCATTGGTTTGAACCTCAAAGCTACTGAACTGAGGCTAGGGTTACCAGGCTCAGAGTCACCAGAGAGAGAAAATGGTGGTGTGCTTAAGAGTTTGGTGTCTGGTGCCAAAAGGGGTTTCTCTGATGCTATTACTGATGGAGGTTCTGGGAAGTGGGTTTTGTCTGGAAATGGTGGATCTGAAGTGGGGTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAAGGTGGTGGTGAATGTAATAACCAACAAAACCCTTTCTCTGCTTCAGTTGTTGTTAAAGAAACTGTTACACACTCTCCAAAGCCTTTGCATGATAACAAACCACATGTTTCTCCTCCTTCTGCAAAGTAAGATTTCTTCTTATTTGGTTGTATGTTATGTTTCTCTTAGTGTTTGTGTATGTTGATGTGCTTTGTTGATTGATGTTGGCTCTTTGTTCATTGAAATATTTTTTGTTTATTTGTCTTGTCAGTTATCACTATTTAGTGTTTATAGTTTCTTCTGTGAGTTTACAAAATGTTGAAAACAAGAACAAAATTATGTTGAATCTGATGTTTCTTTTGGAAATTTGAACAGAAGTCAACTAACTCACTTTTTTTTTTTACAAGAACAAACTCACTTGTTGATTCGCACTGGTTGGATAAACAACTTAATTAAGTGCTTATAGCATTAGCACTTATCTTATATCTTATAAGTGCTTATATATAGCTATTTCCATAATAAAAGATACAACAAGTTCAAAGTGTTTTCATTTAAGCAATTTAAGCTATAAACTTTTTTCACAAGCTATTATGGAGAGCTTATGCTCATGTCATAAGTTGTATCTATAAGCTCTCCCAAACAGTCTCAAAAGTGATTATACTAGTAGATAAGCTCAAATAAGCCAATCCAAATAGGCCTTGGTGGTTGTTGCTAATTATATTCTTATGTTAGCCTCTGGTGTAAAAGCTGGCGTTGTTACTTGTAGTTGTATGTGCTCTAGTAAATTTCAGGATTTTCTATGTGCTAATCTTCAAAATTTCACATAGATAGTTACTTTTGGTTATTCCTTAAATTTTCTTCTGCATGTTGCATTCAATATCTTAAAAGTTTAAAATTTTATCTTAGAAGTTTTTTCTTGTGCCCTTGTGTATGCCCTGGGATTTGATTTTGTCCAGTTAGCCTTTTCCATGTCTTCTGATGCTGAAAGGTTTTTACTCAGCTTCTGTATTCATTGATTTTCACCAACGCATGATAATATAAATCTGTTTTAGCTTGATTCCTTAGTTTTGAATTTATGATCGTTGGCTTTAAAATTGATTTCTTTTTTCTCAATACGGTTTTTATGCGAATCAGGGCGCAAGTTGTGGGATGGCCTCCAATCCGATCTTTCCGGAAGAACTCAATGGTTTCACAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAGTCTGAATGCATATATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTATAGGGAACTTTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTGAGTTTTTATCTACTTGTTATCGTCTTCTCCCATTATCTGTGTGTCTTGATGTTTTCACCGATGCATGATCACAAATATCTCTCGGTGATGTGATGGTGATCATTCTAGTAAATGTATTGTACTTTGACGAACATTTTAGTTAAATGAGCAAAAATATTTGAAAATCGAGGTGTGTCTTGAATGGCTCAATAAATTCTTTACTAGAAAAAGTTCTTTATATAATTAATTGCATATGAAAAAGAAAACGTAATGAAACCAAATGTTAAACTTAAATAGTTAGCTCAAACACACAGACACACATTTTGCCTATACTTCGACAGTACAGTTGTTGATGACATGAATTTATGAACATCGGTCAATGTCAGTGTTGTATAGTGTTTCAATTGAAGAGAACCGTTACCAATACACTCTCTTTCAACCATTTTCTCTATTGTTGGTTGAAATTATGGCATATAAAAACTATTATAGAATATGCATGTATTTATATGTCACAGGTTCTGATTGTGGTGCCAAGTGCCAACATGGTTGAGAATGAAGATTACCTATACAGTAGTCATACCTTTGCATGCCTTTTTTGCTTAAATAAAATGATTCTGATGATGTTTTTGTTGACAAATCCAGGTCAATGTGGCTCATATGGAGTTTCTTGTCGAGAAAAAAATCTAAGTGAAAGTAGATTGGTGGATCTCCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGTACGTCTATTTTCTTATATATAATTCATAATTCACTACATGAATTAACAATGATTAGCTATGTTTGCTGAATTGATAGTTAGACTTATTTTGGCCTATGAACAATGTTAGAATCAACAAAGAGTGATTTAATTCTGATATCTGAAATGATGTTATTTTTGTTATTTTAGGATGTTCACCGAGTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGGTAAGACCAATGTTTGTTATATTAAAATCTCATGTATGATACCTTCATATTTTTTGTCGGAATCATGTATACTCTTATTCCTGCAGCACCTCGAGCCATGGAGAAATGTAAAAGTCGCAACTAG

Protein sequence

>MS.gene05894.t1

MSVPVEQGYGEVPSMETKERSIGLNLKATELRLGLPGSESPERENGGVLKSLVSGAKRGFSDAITDGGSGKWVLSGNGGSEVGLCKDGNLFSPKAKGGGECNNQQNPFSASVVVKETVTHSPKPLHDNKPHVSPPSAKAQVVGWPPIRSFRKNSMVSQPQKNDADAEAKSECIYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCREKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN