Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070873.t1 | XP_024630170.1 | 65.7 | 732 | 18 | 2 | 1 | 499 | 1 | 732 | 3.00E-251 | 877.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070873.t1 | Q9SZL8 | 19.8 | 571 | 222 | 6 | 7 | 341 | 70 | 640 | 3.0e-29 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070873.t1 | A0A396JHA3 | 45.5 | 593 | 90 | 2 | 1 | 360 | 1 | 593 | 9.5e-130 | 473.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070873.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05771 | MS.gene070873 | 0.886949 | 2.19E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070873.t1 | MTR_7g074790 | 82.530 | 166 | 11 | 1 | 1 | 166 | 1 | 148 | 1.79e-91 | 278 |
| MS.gene070873.t1 | MTR_7g074790 | 92.593 | 54 | 4 | 0 | 444 | 497 | 157 | 210 | 7.19e-28 | 111 |
| MS.gene070873.t1 | MTR_5g039760 | 56.287 | 167 | 48 | 2 | 1 | 166 | 1 | 143 | 1.38e-53 | 179 |
| MS.gene070873.t1 | MTR_7g061980 | 67.227 | 119 | 39 | 0 | 1 | 119 | 1 | 119 | 8.09e-49 | 164 |
| MS.gene070873.t1 | MTR_0402s0040 | 28.194 | 454 | 276 | 13 | 10 | 445 | 26 | 447 | 2.44e-37 | 144 |
| MS.gene070873.t1 | MTR_3g058090 | 50.000 | 124 | 40 | 2 | 310 | 433 | 5 | 106 | 1.83e-27 | 106 |
| MS.gene070873.t1 | MTR_4g102720 | 36.709 | 158 | 66 | 2 | 6 | 163 | 3 | 126 | 1.38e-25 | 105 |
| MS.gene070873.t1 | MTR_5g015480 | 36.158 | 177 | 101 | 5 | 10 | 182 | 56 | 224 | 4.79e-21 | 93.2 |
| MS.gene070873.t1 | MTR_4g069880 | 60.294 | 68 | 27 | 0 | 1 | 68 | 1 | 68 | 3.31e-20 | 84.7 |
| MS.gene070873.t1 | MTR_1g019850 | 35.664 | 143 | 79 | 4 | 3 | 141 | 63 | 196 | 7.81e-17 | 80.5 |
| MS.gene070873.t1 | MTR_2g099430 | 48.837 | 86 | 42 | 2 | 35 | 119 | 28 | 112 | 4.59e-15 | 72.0 |
| MS.gene070873.t1 | MTR_6g017200 | 45.783 | 83 | 43 | 2 | 10 | 91 | 58 | 139 | 4.63e-14 | 70.1 |
| MS.gene070873.t1 | MTR_2g070590 | 41.346 | 104 | 57 | 3 | 10 | 110 | 17 | 119 | 5.12e-14 | 68.9 |
| MS.gene070873.t1 | MTR_5g045210 | 34.653 | 101 | 63 | 2 | 312 | 410 | 20 | 119 | 4.71e-13 | 68.6 |
| MS.gene070873.t1 | MTR_6g022080 | 30.263 | 152 | 101 | 4 | 16 | 163 | 91 | 241 | 7.17e-13 | 68.9 |
| MS.gene070873.t1 | MTR_7g113010 | 39.370 | 127 | 61 | 3 | 10 | 134 | 457 | 569 | 1.33e-12 | 70.5 |
| MS.gene070873.t1 | MTR_1g070355 | 27.848 | 158 | 107 | 3 | 14 | 166 | 78 | 233 | 4.12e-12 | 68.9 |
| MS.gene070873.t1 | MTR_6g051425 | 26.630 | 184 | 121 | 6 | 9 | 180 | 13 | 194 | 4.83e-12 | 67.8 |
| MS.gene070873.t1 | MTR_1g057920 | 44.578 | 83 | 44 | 2 | 10 | 91 | 34 | 115 | 9.11e-12 | 62.8 |
| MS.gene070873.t1 | MTR_5g076070 | 26.203 | 187 | 124 | 4 | 13 | 193 | 56 | 234 | 6.46e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070873.t1 | AT4G38180 | 33.508 | 191 | 120 | 3 | 7 | 190 | 70 | 260 | 9.89e-20 | 93.2 |
| MS.gene070873.t1 | AT4G38180 | 28.814 | 118 | 84 | 0 | 172 | 289 | 398 | 515 | 4.30e-15 | 78.6 |
| MS.gene070873.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 3.35e-16 | 82.4 |
| MS.gene070873.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 3.35e-16 | 82.4 |
| MS.gene070873.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 5.39e-13 | 69.3 |
| MS.gene070873.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 5.39e-13 | 69.3 |
| MS.gene070873.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 81 | 183 | 5.88e-13 | 69.3 |
| MS.gene070873.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 8.01e-13 | 71.6 |
| MS.gene070873.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 8.01e-13 | 71.6 |
| MS.gene070873.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.03e-12 | 71.2 |
| MS.gene070873.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.03e-12 | 71.2 |
| MS.gene070873.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.03e-12 | 71.2 |
| MS.gene070873.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.03e-12 | 71.2 |
| MS.gene070873.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.03e-12 | 71.2 |
| MS.gene070873.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 3.23e-12 | 69.7 |
| MS.gene070873.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.38e-11 | 65.9 |
| MS.gene070873.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 3.23e-12 | 69.7 |
| MS.gene070873.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.38e-11 | 65.9 |
| MS.gene070873.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 3.23e-12 | 69.7 |
| MS.gene070873.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.38e-11 | 65.9 |
| MS.gene070873.t1 | AT4G38170 | 23.077 | 130 | 97 | 1 | 162 | 291 | 156 | 282 | 5.33e-12 | 68.6 |
| MS.gene070873.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.64e-11 | 67.4 |
| MS.gene070873.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.68e-11 | 67.4 |
| MS.gene070873.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.68e-11 | 67.4 |
| MS.gene070873.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 2.50e-11 | 66.6 |
Find 83 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGTCTAAAACCGAATT+TGG | 0.140326 | 5.4:+21419479 | MS.gene070873:CDS |
| ATTACACTTTCAAGTATAAA+TGG | 0.233543 | 5.4:+21418496 | MS.gene070873:CDS |
| AGCAAGTGCATGTATGAAAT+TGG | 0.242669 | 5.4:+21419273 | MS.gene070873:CDS |
| TCAAATTTCATTCCAAGTTT+TGG | 0.248103 | 5.4:-21418262 | None:intergenic |
| CGAAATGTTTGAAGAATTGC+AGG | 0.320035 | 5.4:-21419506 | None:intergenic |
| GTCAATGAACATAATCTTCA+TGG | 0.336161 | 5.4:+21419333 | MS.gene070873:CDS |
| CTAGATTGAGCGTGTTTACT+TGG | 0.343617 | 5.4:-21420281 | None:intergenic |
| TAGAGAATTAACAACTAATA+TGG | 0.346505 | 5.4:+21420414 | MS.gene070873:CDS |
| CTTGAATCCCTTTGGTTGCA+TGG | 0.357010 | 5.4:-21420183 | None:intergenic |
| TGGCCGATGACTCTGGATTA+AGG | 0.372007 | 5.4:+21418638 | MS.gene070873:CDS |
| CTTCTTAAAATATACCTATC+AGG | 0.372035 | 5.4:-21419897 | None:intergenic |
| GTGTTACACAACTATGTTGA+TGG | 0.375026 | 5.4:+21420502 | MS.gene070873:CDS |
| CAGAATGGAATTAAACATCT+TGG | 0.376869 | 5.4:+21419210 | MS.gene070873:intron |
| GGTTGTTTCTTGAATCCCTT+TGG | 0.400183 | 5.4:-21420191 | None:intergenic |
| TGTAAGAAGTATGATACATT+TGG | 0.401457 | 5.4:+21419819 | MS.gene070873:CDS |
| AACATTTCGAAAGAGTTGTT+GGG | 0.402715 | 5.4:+21419520 | MS.gene070873:CDS |
| TGGCTTCTTCAAATGATGAT+TGG | 0.406507 | 5.4:+21418236 | MS.gene070873:CDS |
| TCTCTTGATTTAGTAGATCA+TGG | 0.415252 | 5.4:-21418555 | None:intergenic |
| TTCAAGTATAAATGGAAAGT+TGG | 0.416231 | 5.4:+21418504 | MS.gene070873:CDS |
| ATCTTGCACAATGCCACAAC+GGG | 0.416657 | 5.4:-21419934 | None:intergenic |
| GAATTAAACATCTTGGAAAC+AGG | 0.417860 | 5.4:+21419217 | MS.gene070873:CDS |
| TGAGAAAGCTTGGTTGGACT+TGG | 0.419812 | 5.4:+21419311 | MS.gene070873:CDS |
| AAACATTTCGAAAGAGTTGT+TGG | 0.420314 | 5.4:+21419519 | MS.gene070873:CDS |
| CGCTTAGTTCCCTTTGAGCC+GGG | 0.421477 | 5.4:-21420212 | None:intergenic |
| TGTTGTCTAAAACCGAATTT+GGG | 0.422476 | 5.4:+21419480 | MS.gene070873:CDS |
| ATAATCTTCATGGTTCATCT+TGG | 0.427912 | 5.4:+21419343 | MS.gene070873:CDS |
| TATACCTGTGAACTTCTTTG+AGG | 0.430697 | 5.4:-21420314 | None:intergenic |
| AATTGCAGGATACCCAAATT+CGG | 0.433675 | 5.4:-21419492 | None:intergenic |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.436082 | 5.4:+21418390 | MS.gene070873:CDS |
| TATGCTTTACGTGAGGGCTT+CGG | 0.441084 | 5.4:+21418319 | MS.gene070873:CDS |
| ATTTGAGCTGAACGATGTTA+AGG | 0.448624 | 5.4:+21419869 | MS.gene070873:CDS |
| ATTCGGTTTCTAGATAACTT+AGG | 0.453820 | 5.4:-21419984 | None:intergenic |
| TCGCTTAGTTCCCTTTGAGC+CGG | 0.456094 | 5.4:-21420213 | None:intergenic |
| AAGAAACAACCCGGCTCAAA+GGG | 0.456155 | 5.4:+21420203 | MS.gene070873:CDS |
| GATGATTGGAAGCCAAAACT+TGG | 0.457457 | 5.4:+21418250 | MS.gene070873:CDS |
| ATTGATATGGCCGATGACTC+TGG | 0.457637 | 5.4:+21418631 | MS.gene070873:CDS |
| CCAATATTTGTATCATCAAA+AGG | 0.459917 | 5.4:-21420617 | None:intergenic |
| ACAAGCATATGAGATTGATA+TGG | 0.463781 | 5.4:+21418618 | MS.gene070873:CDS |
| AGACAACTAGTCTGAACATT+CGG | 0.469894 | 5.4:-21420001 | None:intergenic |
| ACATATCCTCACGTGCTAGC+GGG | 0.476750 | 5.4:-21420477 | None:intergenic |
| GATTGAGCGTGTTTACTTGG+AGG | 0.477553 | 5.4:-21420278 | None:intergenic |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 5.4:+21418394 | MS.gene070873:CDS |
| TCATTGTCTCTACCTTGTGT+TGG | 0.489570 | 5.4:-21420128 | None:intergenic |
| TTTGTTGTAAGGAAGGAATA+CGG | 0.490669 | 5.4:+21418401 | MS.gene070873:CDS |
| ACCTGTGAACTTCTTTGAGG+TGG | 0.503799 | 5.4:-21420311 | None:intergenic |
| GCATCAGAACTCTCAAATGA+TGG | 0.506034 | 5.4:-21420161 | None:intergenic |
| ATGTTAAGGTGATTCCTGAT+AGG | 0.509691 | 5.4:+21419883 | MS.gene070873:CDS |
| GAGGATAAATGTGCATATGA+AGG | 0.510730 | 5.4:+21418430 | MS.gene070873:CDS |
| CATATCCTCACGTGCTAGCG+GGG | 0.512934 | 5.4:-21420476 | None:intergenic |
| CTTGCTTATGCTTTACGTGA+GGG | 0.518622 | 5.4:+21418313 | MS.gene070873:CDS |
| CAAGAAACAACCCGGCTCAA+AGG | 0.525961 | 5.4:+21420202 | MS.gene070873:CDS |
| ACGGTAGTGTATCGTCATGT+AGG | 0.541762 | 5.4:+21418374 | MS.gene070873:CDS |
| GGAAGGAATACGGAAGAAAG+AGG | 0.542787 | 5.4:+21418411 | MS.gene070873:CDS |
| CCTTGCTTATGCTTTACGTG+AGG | 0.544741 | 5.4:+21418312 | MS.gene070873:CDS |
| AACTTCTTTGAGGTGGGACA+CGG | 0.545922 | 5.4:-21420304 | None:intergenic |
| ATGGGCTGCATGTTATATGA+AGG | 0.546460 | 5.4:+21419395 | MS.gene070873:CDS |
| TTCTGATGCCATGCAACCAA+AGG | 0.548134 | 5.4:+21420175 | MS.gene070873:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.548940 | 5.4:+21418676 | MS.gene070873:CDS |
| GAAATTTGACACTAGAGAAG+AGG | 0.556802 | 5.4:+21418276 | MS.gene070873:CDS |
| CTGCCTTAATCCAGAGTCAT+CGG | 0.562647 | 5.4:-21418641 | None:intergenic |
| GCAGGGCATAGCGCTAATGT+TGG | 0.568818 | 5.4:+21418694 | MS.gene070873:CDS |
| CTTGGAAACAGGATGAAGAA+AGG | 0.571819 | 5.4:+21419228 | MS.gene070873:CDS |
| TTAACAACTAATATGGTCGA+TGG | 0.578359 | 5.4:+21420421 | MS.gene070873:CDS |
| CCCACCTCAAAGAAGTTCAC+AGG | 0.579192 | 5.4:+21420310 | MS.gene070873:CDS |
| CCTGTGAACTTCTTTGAGGT+GGG | 0.581279 | 5.4:-21420310 | None:intergenic |
| ATGAAGGAAGCATTAACACT+TGG | 0.584329 | 5.4:+21419411 | MS.gene070873:CDS |
| TCTGATGCCATGCAACCAAA+GGG | 0.584367 | 5.4:+21420176 | MS.gene070873:CDS |
| AGTCCTCACATAAGCTTGCA+AGG | 0.585698 | 5.4:+21419577 | MS.gene070873:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 5.4:+21418677 | MS.gene070873:CDS |
| AATCTTGCACAATGCCACAA+CGG | 0.597437 | 5.4:-21419935 | None:intergenic |
| ACATTTCGAAAGAGTTGTTG+GGG | 0.600812 | 5.4:+21419521 | MS.gene070873:CDS |
| AACATATCCTCACGTGCTAG+CGG | 0.615108 | 5.4:-21420478 | None:intergenic |
| CGCTAATGTTGGATTTACAG+AGG | 0.620951 | 5.4:+21418705 | MS.gene070873:CDS |
| TTTACAAACAAGAAGAAAGA+CGG | 0.623372 | 5.4:+21418355 | MS.gene070873:CDS |
| TGACTCTGGATTAAGGCAGA+AGG | 0.626414 | 5.4:+21418645 | MS.gene070873:CDS |
| TGTCTCTAAGTTCATTAGAG+CGG | 0.630054 | 5.4:+21420019 | MS.gene070873:CDS |
| ATATCCTCACGTGCTAGCGG+GGG | 0.659146 | 5.4:-21420475 | None:intergenic |
| TGGACAAGAGAAGCCCGTTG+TGG | 0.666264 | 5.4:+21419921 | MS.gene070873:CDS |
| CCTCACGTAAAGCATAAGCA+AGG | 0.669280 | 5.4:-21418312 | None:intergenic |
| TAATGTTGGATTTACAGAGG+TGG | 0.672534 | 5.4:+21418708 | MS.gene070873:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.683097 | 5.4:-21419580 | None:intergenic |
| AAGGGATTCAAGAAACAACC+CGG | 0.691658 | 5.4:+21420194 | MS.gene070873:CDS |
| GTAACAGAATGTCCAACACA+AGG | 0.694581 | 5.4:+21420116 | MS.gene070873:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGTTATTAATGT+AGG | + | chr5.4:21420592-21420611 | MS.gene070873:intron | 10.0% |
| !! | TAGAGAATTAACAACTAATA+TGG | + | chr5.4:21420414-21420433 | MS.gene070873:CDS | 20.0% |
| !!! | ATTACACTTTCAAGTATAAA+TGG | + | chr5.4:21418496-21418515 | MS.gene070873:CDS | 20.0% |
| !!! | TAATGTTGCATAATCATTTT+AGG | + | chr5.4:21420390-21420409 | MS.gene070873:intron | 20.0% |
| ! | AGACAATTCCATCATTTAAA+TGG | + | chr5.4:21419049-21419068 | MS.gene070873:intron | 25.0% |
| ! | CTTCTTAAAATATACCTATC+AGG | - | chr5.4:21419900-21419919 | None:intergenic | 25.0% |
| ! | TACAAAAAGACAAAGAAGTA+TGG | + | chr5.4:21418750-21418769 | MS.gene070873:intron | 25.0% |
| ! | TCAAACAACCATTTAAATGA+TGG | - | chr5.4:21419060-21419079 | None:intergenic | 25.0% |
| ! | TTCAAGTATAAATGGAAAGT+TGG | + | chr5.4:21418504-21418523 | MS.gene070873:CDS | 25.0% |
| ! | TTTACAAACAAGAAGAAAGA+CGG | + | chr5.4:21418355-21418374 | MS.gene070873:CDS | 25.0% |
| !! | TCAAATTTCATTCCAAGTTT+TGG | - | chr5.4:21418265-21418284 | None:intergenic | 25.0% |
| !! | TGTAAGAAGTATGATACATT+TGG | + | chr5.4:21419819-21419838 | MS.gene070873:CDS | 25.0% |
| !!! | ATAGGTATATTTTAAGAAGG+TGG | + | chr5.4:21419901-21419920 | MS.gene070873:CDS | 25.0% |
| !!! | CTGATAGGTATATTTTAAGA+AGG | + | chr5.4:21419898-21419917 | MS.gene070873:CDS | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | chr5.4:21418971-21418990 | None:intergenic | 30.0% | |
| AAACATTTCGAAAGAGTTGT+TGG | + | chr5.4:21419519-21419538 | MS.gene070873:CDS | 30.0% | |
| AAACCAGAAAAAAAAGCAAG+TGG | - | chr5.4:21418979-21418998 | None:intergenic | 30.0% | |
| AAATGATCGTACCTCTATAA+TGG | - | chr5.4:21419005-21419024 | None:intergenic | 30.0% | |
| AACAGATTACAAATGTGTTC+TGG | + | chr5.4:21418866-21418885 | MS.gene070873:intron | 30.0% | |
| AACATTTCGAAAGAGTTGTT+GGG | + | chr5.4:21419520-21419539 | MS.gene070873:CDS | 30.0% | |
| ACAAGCATATGAGATTGATA+TGG | + | chr5.4:21418618-21418637 | MS.gene070873:CDS | 30.0% | |
| ATAATCTTCATGGTTCATCT+TGG | + | chr5.4:21419343-21419362 | MS.gene070873:CDS | 30.0% | |
| CAAATATGATCTTGGATTAC+GGG | + | chr5.4:21418896-21418915 | MS.gene070873:intron | 30.0% | |
| CAGAATGGAATTAAACATCT+TGG | + | chr5.4:21419210-21419229 | MS.gene070873:intron | 30.0% | |
| CATCTGATATGCATAAAAGA+AGG | - | chr5.4:21418836-21418855 | None:intergenic | 30.0% | |
| CTTCTTACAACTACAAGTAA+TGG | - | chr5.4:21419808-21419827 | None:intergenic | 30.0% | |
| GAATTAAACATCTTGGAAAC+AGG | + | chr5.4:21419217-21419236 | MS.gene070873:CDS | 30.0% | |
| GCAAATATGATCTTGGATTA+CGG | + | chr5.4:21418895-21418914 | MS.gene070873:intron | 30.0% | |
| GTCAATGAACATAATCTTCA+TGG | + | chr5.4:21419333-21419352 | MS.gene070873:CDS | 30.0% | |
| GTGCATATGAAGGAAAAATT+CGG | + | chr5.4:21418440-21418459 | MS.gene070873:CDS | 30.0% | |
| TCTCTTGATTTAGTAGATCA+TGG | - | chr5.4:21418558-21418577 | None:intergenic | 30.0% | |
| TGATATGCATAAAAGAAGGA+CGG | - | chr5.4:21418832-21418851 | None:intergenic | 30.0% | |
| TTAACAACTAATATGGTCGA+TGG | + | chr5.4:21420421-21420440 | MS.gene070873:CDS | 30.0% | |
| ! | AGAGTTAGTTTCATGTCTAA+TGG | - | chr5.4:21419712-21419731 | None:intergenic | 30.0% |
| ! | ATGTTGTCTAAAACCGAATT+TGG | + | chr5.4:21419479-21419498 | MS.gene070873:CDS | 30.0% |
| ! | ATTCGGTTTCTAGATAACTT+AGG | - | chr5.4:21419987-21420006 | None:intergenic | 30.0% |
| ! | CTTCTTTTATGCATATCAGA+TGG | + | chr5.4:21418834-21418853 | MS.gene070873:intron | 30.0% |
| ! | GAGTTAGTTTCATGTCTAAT+GGG | - | chr5.4:21419711-21419730 | None:intergenic | 30.0% |
| ! | TGTTGTCTAAAACCGAATTT+GGG | + | chr5.4:21419480-21419499 | MS.gene070873:CDS | 30.0% |
| ! | TTTGTTGTAAGGAAGGAATA+CGG | + | chr5.4:21418401-21418420 | MS.gene070873:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | + | chr5.4:21418390-21418409 | MS.gene070873:CDS | 30.0% |
| !! | TATAGAGGTACGATCATTTT+TGG | + | chr5.4:21419006-21419025 | MS.gene070873:intron | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCAT+TGG | + | chr5.4:21418921-21418940 | MS.gene070873:intron | 30.0% |
| AATTGCAGGATACCCAAATT+CGG | - | chr5.4:21419495-21419514 | None:intergenic | 35.0% | |
| ACATTTCGAAAGAGTTGTTG+GGG | + | chr5.4:21419521-21419540 | MS.gene070873:CDS | 35.0% | |
| AGCAAGTGCATGTATGAAAT+TGG | + | chr5.4:21419273-21419292 | MS.gene070873:CDS | 35.0% | |
| ATGTTAAGGTGATTCCTGAT+AGG | + | chr5.4:21419883-21419902 | MS.gene070873:CDS | 35.0% | |
| ATTTGAGCTGAACGATGTTA+AGG | + | chr5.4:21419869-21419888 | MS.gene070873:CDS | 35.0% | |
| CGAAATGTTTGAAGAATTGC+AGG | - | chr5.4:21419509-21419528 | None:intergenic | 35.0% | |
| GAAATTTGACACTAGAGAAG+AGG | + | chr5.4:21418276-21418295 | MS.gene070873:CDS | 35.0% | |
| GAGGATAAATGTGCATATGA+AGG | + | chr5.4:21418430-21418449 | MS.gene070873:CDS | 35.0% | |
| GTGTGATGCAAATATGATCT+TGG | + | chr5.4:21418888-21418907 | MS.gene070873:intron | 35.0% | |
| GTGTTACACAACTATGTTGA+TGG | + | chr5.4:21420502-21420521 | MS.gene070873:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | chr5.4:21418708-21418727 | MS.gene070873:CDS | 35.0% | |
| TATACCTGTGAACTTCTTTG+AGG | - | chr5.4:21420317-21420336 | None:intergenic | 35.0% | |
| TATGAAGGAAAAATTCGGAG+AGG | + | chr5.4:21418445-21418464 | MS.gene070873:CDS | 35.0% | |
| TCACCATTACTACTCCAAAT+GGG | + | chr5.4:21419615-21419634 | MS.gene070873:intron | 35.0% | |
| TGGCTTCTTCAAATGATGAT+TGG | + | chr5.4:21418236-21418255 | MS.gene070873:CDS | 35.0% | |
| TGTCTCTAAGTTCATTAGAG+CGG | + | chr5.4:21420019-21420038 | MS.gene070873:CDS | 35.0% | |
| TTCACCATTACTACTCCAAA+TGG | + | chr5.4:21419614-21419633 | MS.gene070873:intron | 35.0% | |
| ! | AGACAAAGAAGTATGGTGTA+TGG | + | chr5.4:21418757-21418776 | MS.gene070873:intron | 35.0% |
| ! | AGACAACTAGTCTGAACATT+CGG | - | chr5.4:21420004-21420023 | None:intergenic | 35.0% |
| ! | ATCACTAATGAGAAGCATGA+AGG | + | chr5.4:21419747-21419766 | MS.gene070873:intron | 35.0% |
| ! | ATCTTGGATTACGGGTATTT+TGG | + | chr5.4:21418904-21418923 | MS.gene070873:intron | 35.0% |
| ! | GTATTTTCAACGACAGTTGT+TGG | + | chr5.4:21418801-21418820 | MS.gene070873:intron | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | + | chr5.4:21418991-21419010 | MS.gene070873:intron | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+GGG | + | chr5.4:21419941-21419960 | MS.gene070873:CDS | 35.0% |
| !! | AAGCAGATTTTGAGAAAGCT+TGG | + | chr5.4:21419301-21419320 | MS.gene070873:CDS | 35.0% |
| !! | AGATTTTGAGAAAGCTTGGT+TGG | + | chr5.4:21419305-21419324 | MS.gene070873:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | + | chr5.4:21418394-21418413 | MS.gene070873:CDS | 35.0% |
| !! | ATGAAGGAAGCATTAACACT+TGG | + | chr5.4:21419411-21419430 | MS.gene070873:CDS | 35.0% |
| !!! | AGACCACTTGCTTTTTTTTC+TGG | + | chr5.4:21418973-21418992 | MS.gene070873:intron | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr5.4:21418677-21418696 | MS.gene070873:CDS | 40.0% | |
| AAGGGATTCAAGAAACAACC+CGG | + | chr5.4:21420194-21420213 | MS.gene070873:CDS | 40.0% | |
| AATCTTGCACAATGCCACAA+CGG | - | chr5.4:21419938-21419957 | None:intergenic | 40.0% | |
| ACCAAAGTCAAGCAATGTCT+AGG | + | chr5.4:21419130-21419149 | MS.gene070873:intron | 40.0% | |
| CCAAAGTCAAGCAATGTCTA+GGG | + | chr5.4:21419131-21419150 | MS.gene070873:intron | 40.0% | |
| CGCTAATGTTGGATTTACAG+AGG | + | chr5.4:21418705-21418724 | MS.gene070873:CDS | 40.0% | |
| CTAGATTGAGCGTGTTTACT+TGG | - | chr5.4:21420284-21420303 | None:intergenic | 40.0% | |
| CTTGCTTATGCTTTACGTGA+GGG | + | chr5.4:21418313-21418332 | MS.gene070873:CDS | 40.0% | |
| CTTGGAAACAGGATGAAGAA+AGG | + | chr5.4:21419228-21419247 | MS.gene070873:CDS | 40.0% | |
| GATGATTGGAAGCCAAAACT+TGG | + | chr5.4:21418250-21418269 | MS.gene070873:CDS | 40.0% | |
| GCATCAGAACTCTCAAATGA+TGG | - | chr5.4:21420164-21420183 | None:intergenic | 40.0% | |
| GTAACAGAATGTCCAACACA+AGG | + | chr5.4:21420116-21420135 | MS.gene070873:CDS | 40.0% | |
| GTGTGTATATCTCTCCCATT+TGG | - | chr5.4:21419632-21419651 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr5.4:21419583-21419602 | None:intergenic | 40.0% | |
| TCATTGTCTCTACCTTGTGT+TGG | - | chr5.4:21420131-21420150 | None:intergenic | 40.0% | |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | chr5.4:21419395-21419414 | MS.gene070873:CDS | 40.0% |
| ! | GGCATTGTGCAAGATTTTAG+GGG | + | chr5.4:21419942-21419961 | MS.gene070873:CDS | 40.0% |
| ! | GTGGCATTGTGCAAGATTTT+AGG | + | chr5.4:21419940-21419959 | MS.gene070873:CDS | 40.0% |
| ! | TCTCCCATTTGGAGTAGTAA+TGG | - | chr5.4:21419621-21419640 | None:intergenic | 40.0% |
| !! | GCAAGATTTTAGGGGAAAAG+AGG | + | chr5.4:21419950-21419969 | MS.gene070873:CDS | 40.0% |
| !! | GGTTGTTTCTTGAATCCCTT+TGG | - | chr5.4:21420194-21420213 | None:intergenic | 40.0% |
| AACATATCCTCACGTGCTAG+CGG | - | chr5.4:21420481-21420500 | None:intergenic | 45.0% | |
| AAGAAACAACCCGGCTCAAA+GGG | + | chr5.4:21420203-21420222 | MS.gene070873:CDS | 45.0% | |
| AAGTGGTCTATTGGCATCGT+TGG | - | chr5.4:21418962-21418981 | None:intergenic | 45.0% | |
| ACGGTAGTGTATCGTCATGT+AGG | + | chr5.4:21418374-21418393 | MS.gene070873:CDS | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | + | chr5.4:21419577-21419596 | MS.gene070873:CDS | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | - | chr5.4:21419185-21419204 | None:intergenic | 45.0% | |
| ATCTTGCACAATGCCACAAC+GGG | - | chr5.4:21419937-21419956 | None:intergenic | 45.0% | |
| ATTGATATGGCCGATGACTC+TGG | + | chr5.4:21418631-21418650 | MS.gene070873:CDS | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr5.4:21418676-21418695 | MS.gene070873:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | - | chr5.4:21419174-21419193 | None:intergenic | 45.0% | |
| CCCTAGACATTGCTTGACTT+TGG | - | chr5.4:21419134-21419153 | None:intergenic | 45.0% | |
| CCTCACGTAAAGCATAAGCA+AGG | - | chr5.4:21418315-21418334 | None:intergenic | 45.0% | |
| CCTTGCTTATGCTTTACGTG+AGG | + | chr5.4:21418312-21418331 | MS.gene070873:CDS | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | + | chr5.4:21419178-21419197 | MS.gene070873:intron | 45.0% | |
| CTGCCTTAATCCAGAGTCAT+CGG | - | chr5.4:21418644-21418663 | None:intergenic | 45.0% | |
| CTTGAATCCCTTTGGTTGCA+TGG | - | chr5.4:21420186-21420205 | None:intergenic | 45.0% | |
| GATTGAGCGTGTTTACTTGG+AGG | - | chr5.4:21420281-21420300 | None:intergenic | 45.0% | |
| GGAAGGAATACGGAAGAAAG+AGG | + | chr5.4:21418411-21418430 | MS.gene070873:CDS | 45.0% | |
| GGCATCGTTGGTACAATATG+TGG | - | chr5.4:21418950-21418969 | None:intergenic | 45.0% | |
| GGTCAGTGAAGATCGTCTTT+GGG | - | chr5.4:21419113-21419132 | None:intergenic | 45.0% | |
| TATGCTTTACGTGAGGGCTT+CGG | + | chr5.4:21418319-21418338 | MS.gene070873:CDS | 45.0% | |
| TCTGATGCCATGCAACCAAA+GGG | + | chr5.4:21420176-21420195 | MS.gene070873:CDS | 45.0% | |
| TGACTCTGGATTAAGGCAGA+AGG | + | chr5.4:21418645-21418664 | MS.gene070873:CDS | 45.0% | |
| TGAGAAAGCTTGGTTGGACT+TGG | + | chr5.4:21419311-21419330 | MS.gene070873:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr5.4:21419114-21419133 | None:intergenic | 45.0% | |
| TTCTGATGCCATGCAACCAA+AGG | + | chr5.4:21420175-21420194 | MS.gene070873:CDS | 45.0% | |
| ! | ACATGGCACTTGTTGCAGAA+TGG | + | chr5.4:21419195-21419214 | MS.gene070873:intron | 45.0% |
| ! | ACCTGTGAACTTCTTTGAGG+TGG | - | chr5.4:21420314-21420333 | None:intergenic | 45.0% |
| !! | AACTTCTTTGAGGTGGGACA+CGG | - | chr5.4:21420307-21420326 | None:intergenic | 45.0% |
| !! | CCTGTGAACTTCTTTGAGGT+GGG | - | chr5.4:21420313-21420332 | None:intergenic | 45.0% |
| !!! | GGAGGAGCACTTCTTTTCTT+GGG | - | chr5.4:21420263-21420282 | None:intergenic | 45.0% |
| !!! | TGGAGGAGCACTTCTTTTCT+TGG | - | chr5.4:21420264-21420283 | None:intergenic | 45.0% |
| !! | TTATGAAATAAAAAAAAAAT+GGG | + | chr5.4:21419377-21419396 | MS.gene070873:CDS | 5.0% |
| !! | TTTATGAAATAAAAAAAAAA+TGG | + | chr5.4:21419376-21419395 | MS.gene070873:CDS | 5.0% |
| ACATATCCTCACGTGCTAGC+GGG | - | chr5.4:21420480-21420499 | None:intergenic | 50.0% | |
| CAAGAAACAACCCGGCTCAA+AGG | + | chr5.4:21420202-21420221 | MS.gene070873:CDS | 50.0% | |
| CCCACCTCAAAGAAGTTCAC+AGG | + | chr5.4:21420310-21420329 | MS.gene070873:CDS | 50.0% | |
| TCGCTTAGTTCCCTTTGAGC+CGG | - | chr5.4:21420216-21420235 | None:intergenic | 50.0% | |
| TGGCCGATGACTCTGGATTA+AGG | + | chr5.4:21418638-21418657 | MS.gene070873:CDS | 50.0% | |
| ! | AGTATGGTGTATGGTGACGC+TGG | + | chr5.4:21418766-21418785 | MS.gene070873:intron | 50.0% |
| ! | TTTTCTTGGGCTGACGCTCA+AGG | - | chr5.4:21420250-21420269 | None:intergenic | 50.0% |
| ATATCCTCACGTGCTAGCGG+GGG | - | chr5.4:21420478-21420497 | None:intergenic | 55.0% | |
| CATATCCTCACGTGCTAGCG+GGG | - | chr5.4:21420479-21420498 | None:intergenic | 55.0% | |
| CGCTTAGTTCCCTTTGAGCC+GGG | - | chr5.4:21420215-21420234 | None:intergenic | 55.0% | |
| CTAGCGGGGGCTCATAAGTT+GGG | - | chr5.4:21420465-21420484 | None:intergenic | 55.0% | |
| GCAGGGCATAGCGCTAATGT+TGG | + | chr5.4:21418694-21418713 | MS.gene070873:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | + | chr5.4:21419165-21419184 | MS.gene070873:intron | 55.0% | |
| TAGCGGGGGCTCATAAGTTG+GGG | - | chr5.4:21420464-21420483 | None:intergenic | 55.0% | |
| TGGACAAGAGAAGCCCGTTG+TGG | + | chr5.4:21419921-21419940 | MS.gene070873:CDS | 55.0% | |
| GCTAGCGGGGGCTCATAAGT+TGG | - | chr5.4:21420466-21420485 | None:intergenic | 60.0% | |
| ! | AGCGGGGGCTCATAAGTTGG+GGG | - | chr5.4:21420463-21420482 | None:intergenic | 60.0% |
| ! | GGGCTCATAAGTTGGGGGCG+CGG | - | chr5.4:21420458-21420477 | None:intergenic | 65.0% |
| TGAGCCCCCGCTAGCACGTG+AGG | + | chr5.4:21420471-21420490 | MS.gene070873:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 21418235 | 21420624 | 21418235 | ID=MS.gene070873 |
| chr5.4 | mRNA | 21418235 | 21420624 | 21418235 | ID=MS.gene070873.t1;Parent=MS.gene070873 |
| chr5.4 | exon | 21418235 | 21418732 | 21418235 | ID=MS.gene070873.t1.exon1;Parent=MS.gene070873.t1 |
| chr5.4 | CDS | 21418235 | 21418732 | 21418235 | ID=cds.MS.gene070873.t1;Parent=MS.gene070873.t1 |
| chr5.4 | exon | 21419213 | 21419598 | 21419213 | ID=MS.gene070873.t1.exon2;Parent=MS.gene070873.t1 |
| chr5.4 | CDS | 21419213 | 21419598 | 21419213 | ID=cds.MS.gene070873.t1;Parent=MS.gene070873.t1 |
| chr5.4 | exon | 21419818 | 21420331 | 21419818 | ID=MS.gene070873.t1.exon3;Parent=MS.gene070873.t1 |
| chr5.4 | CDS | 21419818 | 21420331 | 21419818 | ID=cds.MS.gene070873.t1;Parent=MS.gene070873.t1 |
| chr5.4 | exon | 21420412 | 21420523 | 21420412 | ID=MS.gene070873.t1.exon4;Parent=MS.gene070873.t1 |
| chr5.4 | CDS | 21420412 | 21420523 | 21420412 | ID=cds.MS.gene070873.t1;Parent=MS.gene070873.t1 |
| chr5.4 | exon | 21420614 | 21420624 | 21420614 | ID=MS.gene070873.t1.exon5;Parent=MS.gene070873.t1 |
| chr5.4 | CDS | 21420614 | 21420624 | 21420614 | ID=cds.MS.gene070873.t1;Parent=MS.gene070873.t1 |
| Gene Sequence |
| Protein sequence |
