AlfalfaGEDB | MS.gene05771

M. sativa cultivar XinJiangDaYe / MS.gene05771

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05771.t1	XP_024630170.1	65.6	732	19	2	1	499	1	732	2.00E-250	874.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05771.t1	Q9SZL8	20.0	571	221	6	7	341	70	640	1.3e-29	132.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05771.t1	A0A396JHA3	45.4	593	91	2	1	360	1	593	2.1e-129	472.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene05771.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05771	MS.gene070873	0.886949	2.19E-72	-1.69E-46
MS.gene05771	MS.gene08504	0.882864	7.28E-71	-1.69E-46
MS.gene05771	MS.gene44615	0.972266	1.74E-134	-1.69E-46
MS.gene05771	MS.gene72507	0.883625	3.83E-71	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05771.t1	MTR_7g074790	83.133	166	10	1	1	166	1	148	5.18e-92	280
MS.gene05771.t1	MTR_7g074790	90.741	54	5	0	444	497	157	210	8.99e-27	108
MS.gene05771.t1	MTR_5g039760	55.689	167	49	2	1	166	1	143	3.09e-53	178
MS.gene05771.t1	MTR_7g061980	66.387	119	40	0	1	119	1	119	1.84e-48	163
MS.gene05771.t1	MTR_0402s0040	27.974	454	277	13	10	445	26	447	4.73e-37	143
MS.gene05771.t1	MTR_3g058090	50.000	124	40	2	310	433	5	106	1.79e-27	106
MS.gene05771.t1	MTR_4g102720	36.076	158	67	2	6	163	3	126	2.60e-25	104
MS.gene05771.t1	MTR_5g015480	35.593	177	102	5	10	182	56	224	1.05e-20	92.0
MS.gene05771.t1	MTR_4g069880	58.824	68	28	0	1	68	1	68	8.25e-20	83.6
MS.gene05771.t1	MTR_1g019850	35.664	143	79	4	3	141	63	196	7.81e-17	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05771.t1	AT4G38180	34.031	191	119	3	7	190	70	260	1.06e-19	93.2
MS.gene05771.t1	AT4G38180	28.814	118	84	0	172	289	398	515	4.15e-15	79.0
MS.gene05771.t1	AT3G22170	28.261	184	123	3	170	346	381	562	2.97e-16	82.4
MS.gene05771.t1	AT3G22170	28.261	184	123	3	170	346	381	562	2.97e-16	82.4
MS.gene05771.t1	AT3G59470	40.187	107	56	4	9	111	69	171	6.68e-13	69.3
MS.gene05771.t1	AT3G59470	40.187	107	56	4	9	111	69	171	6.68e-13	69.3
MS.gene05771.t1	AT3G59470	40.187	107	56	4	9	111	81	183	7.85e-13	69.3
MS.gene05771.t1	AT4G15090	23.438	128	98	0	170	297	372	499	1.02e-12	71.2
MS.gene05771.t1	AT4G15090	29.814	161	109	4	3	161	44	202	4.56e-11	65.9
MS.gene05771.t1	AT4G15090	23.438	128	98	0	170	297	372	499	1.02e-12	71.2

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Find 82 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCGAAAGAGTTGT+TGG	0.420314	3.1:+49371257	MS.gene05771:CDS
AACATATCCTCACGTGCTAG+CGG	0.615108	3.1:-49372216	None:intergenic
AACATTTCGAAAGAGTTGTT+GGG	0.402715	3.1:+49371258	MS.gene05771:CDS
AACTTATGAGCACACATGCA+GGG	0.596381	3.1:+49370415	MS.gene05771:CDS
AACTTCTTTGAGGTGGGACA+CGG	0.545922	3.1:-49372042	None:intergenic
AAGAAACAACCCGGCTCAAA+GGG	0.456155	3.1:+49371941	MS.gene05771:CDS
AAGGGATTCAAGAAACAACC+CGG	0.691658	3.1:+49371932	MS.gene05771:CDS
AATCTTGCACAATGCCACAA+CGG	0.597437	3.1:-49371673	None:intergenic
AATTGCAGGATACCCAAATT+CGG	0.433675	3.1:-49371230	None:intergenic
ACAAGCATATGAGATTGATA+TGG	0.463781	3.1:+49370356	MS.gene05771:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGCAAGTGGTCTAT+TGG	-	chr3.1:49370709-49370728	None:intergenic	30.0%
AAACATTTCGAAAGAGTTGT+TGG	+	chr3.1:49371257-49371276	MS.gene05771:CDS	30.0%
AAACCAGAAAAAAAAGCAAG+TGG	-	chr3.1:49370717-49370736	None:intergenic	30.0%
AAATGATCGTACCTCTATAA+TGG	-	chr3.1:49370743-49370762	None:intergenic	30.0%
AACAGATTACAAATGTGTTC+TGG	+	chr3.1:49370604-49370623	MS.gene05771:intron	30.0%
AACATTTCGAAAGAGTTGTT+GGG	+	chr3.1:49371258-49371277	MS.gene05771:CDS	30.0%
ACAAGCATATGAGATTGATA+TGG	+	chr3.1:49370356-49370375	MS.gene05771:CDS	30.0%
ATAATCTTCATGGTTCATCT+TGG	+	chr3.1:49371081-49371100	MS.gene05771:CDS	30.0%
CAAATATGATCTTGGATTAC+GGG	+	chr3.1:49370634-49370653	MS.gene05771:intron	30.0%
CAGAATGGAATTAAACATCT+TGG	+	chr3.1:49370948-49370967	MS.gene05771:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	49369973	49372363	49369973	ID=MS.gene05771
chr3.1	mRNA	49369973	49372363	49369973	ID=MS.gene05771.t1;Parent=MS.gene05771
chr3.1	exon	49369973	49370470	49369973	ID=MS.gene05771.t1.exon1;Parent=MS.gene05771.t1
chr3.1	CDS	49369973	49370470	49369973	ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1
chr3.1	exon	49370951	49371336	49370951	ID=MS.gene05771.t1.exon2;Parent=MS.gene05771.t1
chr3.1	CDS	49370951	49371336	49370951	ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1
chr3.1	exon	49371556	49372069	49371556	ID=MS.gene05771.t1.exon3;Parent=MS.gene05771.t1
chr3.1	CDS	49371556	49372069	49371556	ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1
chr3.1	exon	49372150	49372261	49372150	ID=MS.gene05771.t1.exon4;Parent=MS.gene05771.t1
chr3.1	CDS	49372150	49372261	49372150	ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1
chr3.1	exon	49372353	49372363	49372353	ID=MS.gene05771.t1.exon5;Parent=MS.gene05771.t1
chr3.1	CDS	49372353	49372363	49372353	ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1

Gene Sequence

>MS.gene05771

ATGGCTTCTTCAAATGATGATTGGAAGCCAAAACTTGGAATGAAATTTGACACTAGAGAAGAGGCTGAACAATTTTACCTTGCTTATGCTTTACGTGAGGGCTTCGGAGTTAGAGTACGCTTTACAAACAGGAAGAAAGACGGTAGTGTATCGTCATGTAGGTTTGTTTGTTGTAAGGAAGGAATACGGAAGAAAGAGGATAAATGTGCATATGAAGGAAAAATTCGGAGAGGCGAGACTAGAACGAAATGCTTAGCAAGAATTACACTTTCAAGTATAAATGGAAAGTTGGTTATCAATGAGTTTGTAGAAAAACATAACCATGATCTACTAAATCAAGAGACAACGCACATGCTTCGATCACATAGAAAGATAACTGAAGTACAAGCATATGAGATTGATATGGCCGATGACTCTGGATTAAGGCAGAAGGAAGTGTATCAACTTATGAGCACACATGCAGGGCATAGCGCTAATGTTGGATTTACAGAGGTGGATGTAAGAAACTACATCACTACAAAAAGACAAAGAAGTATGGTGTATGGTGACGCTGGATATCTTTCACAGTATTTTCAACGACAGTTGTTGGAGAATCCGTCCTTCTTTTATGCATATCAGATGGATATAGATGAACAGATTACAAATGTGTTCTGGTGTGATGCAAATATGATCTTGGATTACGGGTATTTTGGTGATGTTGTTTCATTGGACACCACATATTGTACCAACGATGCCAATAGACCACTTGCTTTTTTTTCTGGTTTCAACCATTATAGAGGTACGATCATTTTTGGTGCAGCTCTAATGTATGATGAGACAATTCCATCATTTAAATGGTTGTTTGAAACATTCTTACAAGCACACAACAACAAAAACCCAAAGACGATCTTCACTGACCAAAGTCAAGCAATGTCTAGGGCAATTGAAGAAGTGATGCCTGAGACTCACCATGGTTTATGCACATGGCACTTGTTGCAGAATGGAATTAAACATCTTGGAAACAGGATGAAGAAAGGAGCTTCTTTGCTAACAGATTTTAGCAAGTGCATGTATGAAATTGGCATTGAAGCAGATTTTGAGAAAGCTTGGTTGGACTTGGTCAATGAACATAATCTTCATGGTTCATCTTGGATCAAGTCAGTTTATGAAATAAAAAAAAAATGGGCTGCATGTTATATGAAGGAAGCATTAACACTTGGCATGCGAAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTTAAATGTTGTCTAAAACCGAATTTGGGTATCCTGCAATTCTTCAAACATTTCGAAAGAGTTGTTGGGGAGAAGAGAGAAAAAGAACTGAAATGTGATTATGAGTCCTCACATAAGCTTGCAAGGTTAGTGTATGAAACTTCACCATTACTACTCCAAATGGGAGAGATATACACACACACTATATTTGAGTTGTTTCAAAACGAGTTTAAGTTATTCTTGACTTTGTCTGTACCCATTAGACATGAAACTAACTCTCTATGTGAATATGTCATCACTAATGAGAAGCATGAAGGATCTTTTAGAGTGTCATTTAATCGTGTTTCAACTTCCATTACTTGTAGTTGTAAGAAGTATGATACATTTGGCATACTTTGTTCGCATGCATTAAAAGTATTTGAGCTGAACGATGTTAAGGTGATTCCTGATAGGTATATTTTAAGAAGGTGGACAAGAGAAGCCCGTTGTGGCATTGTGCAAGATTTTAGGGGAAAAGAGGTTGAACAAGATCCTAAGTTATCTAGAAATCGAATGTTCAGACTAGTTGTCTCTAAGTTCATTAGAGCGGCAACTGTAGCAGCATCGCATAGTGAAGAAAGTCTCATGTTTGTTGATAAAAGTGTAGATGAAATGTTCAAGAAAGTAACAGAATGTCCAACACAAGGTAGAGACAATGACAATGATCATCCATCATTTGAGAGTTCTGATGCCATGCAACCAAAGGGATTCAAGAAACAACCCGGCTCAAAGGGAACTAAGCGACATAAAAGTTTCCTTGAGCGTCAGCCCAAGAAAAGAAGTGCTCCTGCAAGTAAACACGCTCAATCTAGCCGTGTCCCACCTCAAAGAAGTTCACAGGTATATAAGTTGATATGTAGATTACTTGTTTTAGTTTTACATGTACTTTCACTTATTTTAATGTTGCATAATCATTTTAGGTTAGAGAATTAACAACTAATATGGTCGATGGAGTATCTTGTTCCGCGCCCCCAACTTATGAGCCCCCGCTAGCACGTGAGGATATGTTTGTGTTACACAACTATGTTGATGGTAATTTCATATTTTTTTTTCATAACTATTCTTATACTAATTATTTTTCATCACACAATCATGATTTAATTATTTTTTGTTATTAATGTAGGCACCTTTTGA

Protein sequence

>MS.gene05771.t1

MASSNDDWKPKLGMKFDTREEAEQFYLAYALREGFGVRVRFTNRKKDGSVSSCRFVCCKEGIRKKEDKCAYEGKIRRGETRTKCLARITLSSINGKLVINEFVEKHNHDLLNQETTHMLRSHRKITEVQAYEIDMADDSGLRQKEVYQLMSTHAGHSANVGFTEVDNGIKHLGNRMKKGASLLTDFSKCMYEIGIEADFEKAWLDLVNEHNLHGSSWIKSVYEIKKKWAACYMKEALTLGMRSTQVSESLNAHFKCCLKPNLGILQFFKHFERVVGEKREKELKCDYESSHKLASCKKYDTFGILCSHALKVFELNDVKVIPDRYILRRWTREARCGIVQDFRGKEVEQDPKLSRNRMFRLVVSKFIRAATVAASHSEESLMFVDKSVDEMFKKVTECPTQGRDNDNDHPSFESSDAMQPKGFKKQPGSKGTKRHKSFLERQPKKRSAPASKHAQSSRVPPQRSSQVRELTTNMVDGVSCSAPPTYEPPLAREDMFVLHNYVDGTF