Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05771.t1 | XP_024630170.1 | 65.6 | 732 | 19 | 2 | 1 | 499 | 1 | 732 | 2.00E-250 | 874.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05771.t1 | Q9SZL8 | 20.0 | 571 | 221 | 6 | 7 | 341 | 70 | 640 | 1.3e-29 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05771.t1 | A0A396JHA3 | 45.4 | 593 | 91 | 2 | 1 | 360 | 1 | 593 | 2.1e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05771.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05771 | MS.gene070873 | 0.886949 | 2.19E-72 | -1.69E-46 |
| MS.gene05771 | MS.gene08504 | 0.882864 | 7.28E-71 | -1.69E-46 |
| MS.gene05771 | MS.gene44615 | 0.972266 | 1.74E-134 | -1.69E-46 |
| MS.gene05771 | MS.gene72507 | 0.883625 | 3.83E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05771.t1 | MTR_7g074790 | 83.133 | 166 | 10 | 1 | 1 | 166 | 1 | 148 | 5.18e-92 | 280 |
| MS.gene05771.t1 | MTR_7g074790 | 90.741 | 54 | 5 | 0 | 444 | 497 | 157 | 210 | 8.99e-27 | 108 |
| MS.gene05771.t1 | MTR_5g039760 | 55.689 | 167 | 49 | 2 | 1 | 166 | 1 | 143 | 3.09e-53 | 178 |
| MS.gene05771.t1 | MTR_7g061980 | 66.387 | 119 | 40 | 0 | 1 | 119 | 1 | 119 | 1.84e-48 | 163 |
| MS.gene05771.t1 | MTR_0402s0040 | 27.974 | 454 | 277 | 13 | 10 | 445 | 26 | 447 | 4.73e-37 | 143 |
| MS.gene05771.t1 | MTR_3g058090 | 50.000 | 124 | 40 | 2 | 310 | 433 | 5 | 106 | 1.79e-27 | 106 |
| MS.gene05771.t1 | MTR_4g102720 | 36.076 | 158 | 67 | 2 | 6 | 163 | 3 | 126 | 2.60e-25 | 104 |
| MS.gene05771.t1 | MTR_5g015480 | 35.593 | 177 | 102 | 5 | 10 | 182 | 56 | 224 | 1.05e-20 | 92.0 |
| MS.gene05771.t1 | MTR_4g069880 | 58.824 | 68 | 28 | 0 | 1 | 68 | 1 | 68 | 8.25e-20 | 83.6 |
| MS.gene05771.t1 | MTR_1g019850 | 35.664 | 143 | 79 | 4 | 3 | 141 | 63 | 196 | 7.81e-17 | 80.5 |
| MS.gene05771.t1 | MTR_2g099430 | 47.674 | 86 | 43 | 2 | 35 | 119 | 28 | 112 | 9.06e-15 | 70.9 |
| MS.gene05771.t1 | MTR_6g017200 | 44.578 | 83 | 44 | 2 | 10 | 91 | 58 | 139 | 1.15e-13 | 68.9 |
| MS.gene05771.t1 | MTR_2g070590 | 40.385 | 104 | 58 | 3 | 10 | 110 | 17 | 119 | 1.17e-13 | 68.2 |
| MS.gene05771.t1 | MTR_5g045210 | 34.653 | 101 | 63 | 2 | 312 | 410 | 20 | 119 | 4.75e-13 | 68.6 |
| MS.gene05771.t1 | MTR_7g113010 | 39.370 | 127 | 61 | 3 | 10 | 134 | 457 | 569 | 1.28e-12 | 70.5 |
| MS.gene05771.t1 | MTR_6g022080 | 29.605 | 152 | 102 | 4 | 16 | 163 | 91 | 241 | 1.41e-12 | 68.2 |
| MS.gene05771.t1 | MTR_6g051425 | 26.630 | 184 | 121 | 6 | 9 | 180 | 13 | 194 | 5.79e-12 | 67.4 |
| MS.gene05771.t1 | MTR_1g070355 | 27.215 | 158 | 108 | 3 | 14 | 166 | 78 | 233 | 8.16e-12 | 68.2 |
| MS.gene05771.t1 | MTR_5g076070 | 26.738 | 187 | 123 | 4 | 13 | 193 | 56 | 234 | 2.14e-11 | 65.1 |
| MS.gene05771.t1 | MTR_1g057920 | 43.373 | 83 | 45 | 2 | 10 | 91 | 34 | 115 | 2.38e-11 | 61.6 |
| MS.gene05771.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 53 | 166 | 6.67e-11 | 63.2 |
| MS.gene05771.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 65 | 178 | 8.26e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05771.t1 | AT4G38180 | 34.031 | 191 | 119 | 3 | 7 | 190 | 70 | 260 | 1.06e-19 | 93.2 |
| MS.gene05771.t1 | AT4G38180 | 28.814 | 118 | 84 | 0 | 172 | 289 | 398 | 515 | 4.15e-15 | 79.0 |
| MS.gene05771.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 2.97e-16 | 82.4 |
| MS.gene05771.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 2.97e-16 | 82.4 |
| MS.gene05771.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.68e-13 | 69.3 |
| MS.gene05771.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.68e-13 | 69.3 |
| MS.gene05771.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 81 | 183 | 7.85e-13 | 69.3 |
| MS.gene05771.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene05771.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene05771.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene05771.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene05771.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene05771.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene05771.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene05771.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene05771.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene05771.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene05771.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 1.09e-12 | 71.2 |
| MS.gene05771.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 1.09e-12 | 71.2 |
| MS.gene05771.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.16e-12 | 69.3 |
| MS.gene05771.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.57e-11 | 65.9 |
| MS.gene05771.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.16e-12 | 69.3 |
| MS.gene05771.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.57e-11 | 65.9 |
| MS.gene05771.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.16e-12 | 69.3 |
| MS.gene05771.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.57e-11 | 65.9 |
| MS.gene05771.t1 | AT4G38170 | 23.077 | 130 | 97 | 1 | 162 | 291 | 156 | 282 | 5.42e-12 | 68.6 |
| MS.gene05771.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.61e-11 | 67.4 |
| MS.gene05771.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.61e-11 | 67.4 |
| MS.gene05771.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.68e-11 | 67.4 |
| MS.gene05771.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 2.37e-11 | 66.6 |
Find 82 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGTCTAAAACCGAATT+TGG | 0.140326 | 3.1:+49371217 | MS.gene05771:CDS |
| ATTACACTTTCAAGTATAAA+TGG | 0.233543 | 3.1:+49370234 | MS.gene05771:CDS |
| AGCAAGTGCATGTATGAAAT+TGG | 0.242669 | 3.1:+49371011 | MS.gene05771:CDS |
| TCAAATTTCATTCCAAGTTT+TGG | 0.248103 | 3.1:-49370000 | None:intergenic |
| GATTGAGCGTGTTTACTTGC+AGG | 0.306060 | 3.1:-49372016 | None:intergenic |
| CGAAATGTTTGAAGAATTGC+AGG | 0.320035 | 3.1:-49371244 | None:intergenic |
| GTCAATGAACATAATCTTCA+TGG | 0.336161 | 3.1:+49371071 | MS.gene05771:CDS |
| TAGAGAATTAACAACTAATA+TGG | 0.346505 | 3.1:+49372152 | MS.gene05771:CDS |
| CTTGAATCCCTTTGGTTGCA+TGG | 0.357010 | 3.1:-49371921 | None:intergenic |
| TGGCCGATGACTCTGGATTA+AGG | 0.372007 | 3.1:+49370376 | MS.gene05771:CDS |
| CTTCTTAAAATATACCTATC+AGG | 0.372035 | 3.1:-49371635 | None:intergenic |
| GTGTTACACAACTATGTTGA+TGG | 0.375026 | 3.1:+49372240 | MS.gene05771:CDS |
| CAGAATGGAATTAAACATCT+TGG | 0.376869 | 3.1:+49370948 | MS.gene05771:intron |
| GGTTGTTTCTTGAATCCCTT+TGG | 0.400183 | 3.1:-49371929 | None:intergenic |
| TGTAAGAAGTATGATACATT+TGG | 0.401457 | 3.1:+49371557 | MS.gene05771:CDS |
| AACATTTCGAAAGAGTTGTT+GGG | 0.402715 | 3.1:+49371258 | MS.gene05771:CDS |
| TGGCTTCTTCAAATGATGAT+TGG | 0.406507 | 3.1:+49369974 | MS.gene05771:CDS |
| TCTCTTGATTTAGTAGATCA+TGG | 0.415252 | 3.1:-49370293 | None:intergenic |
| TTCAAGTATAAATGGAAAGT+TGG | 0.416231 | 3.1:+49370242 | MS.gene05771:CDS |
| ATCTTGCACAATGCCACAAC+GGG | 0.416657 | 3.1:-49371672 | None:intergenic |
| GAATTAAACATCTTGGAAAC+AGG | 0.417860 | 3.1:+49370955 | MS.gene05771:CDS |
| TGAGAAAGCTTGGTTGGACT+TGG | 0.419812 | 3.1:+49371049 | MS.gene05771:CDS |
| AAACATTTCGAAAGAGTTGT+TGG | 0.420314 | 3.1:+49371257 | MS.gene05771:CDS |
| CGCTTAGTTCCCTTTGAGCC+GGG | 0.421477 | 3.1:-49371950 | None:intergenic |
| TGTTGTCTAAAACCGAATTT+GGG | 0.422476 | 3.1:+49371218 | MS.gene05771:CDS |
| ATAATCTTCATGGTTCATCT+TGG | 0.427912 | 3.1:+49371081 | MS.gene05771:CDS |
| TATACCTGTGAACTTCTTTG+AGG | 0.430697 | 3.1:-49372052 | None:intergenic |
| AATTGCAGGATACCCAAATT+CGG | 0.433675 | 3.1:-49371230 | None:intergenic |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.436082 | 3.1:+49370128 | MS.gene05771:CDS |
| TATGCTTTACGTGAGGGCTT+CGG | 0.441084 | 3.1:+49370057 | MS.gene05771:CDS |
| ATTCGATTTCTAGATAACTT+AGG | 0.444832 | 3.1:-49371722 | None:intergenic |
| ATTTGAGCTGAACGATGTTA+AGG | 0.448624 | 3.1:+49371607 | MS.gene05771:CDS |
| TTAGAGTACGCTTTACAAAC+AGG | 0.450669 | 3.1:+49370082 | MS.gene05771:CDS |
| TCGCTTAGTTCCCTTTGAGC+CGG | 0.456094 | 3.1:-49371951 | None:intergenic |
| AAGAAACAACCCGGCTCAAA+GGG | 0.456155 | 3.1:+49371941 | MS.gene05771:CDS |
| GATGATTGGAAGCCAAAACT+TGG | 0.457457 | 3.1:+49369988 | MS.gene05771:CDS |
| ATTGATATGGCCGATGACTC+TGG | 0.457637 | 3.1:+49370369 | MS.gene05771:CDS |
| CCAATATTTGTATCATCAAA+AGG | 0.459917 | 3.1:-49372356 | None:intergenic |
| ACAAGCATATGAGATTGATA+TGG | 0.463781 | 3.1:+49370356 | MS.gene05771:CDS |
| ACATATCCTCACGTGCTAGC+GGG | 0.476750 | 3.1:-49372215 | None:intergenic |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 3.1:+49370132 | MS.gene05771:CDS |
| TCATTGTCTCTACCTTGTGT+TGG | 0.489570 | 3.1:-49371866 | None:intergenic |
| TTTGTTGTAAGGAAGGAATA+CGG | 0.490669 | 3.1:+49370139 | MS.gene05771:CDS |
| ACCTGTGAACTTCTTTGAGG+TGG | 0.503799 | 3.1:-49372049 | None:intergenic |
| GCATCAGAACTCTCAAATGA+TGG | 0.506034 | 3.1:-49371899 | None:intergenic |
| ATGTTAAGGTGATTCCTGAT+AGG | 0.509691 | 3.1:+49371621 | MS.gene05771:CDS |
| GAGGATAAATGTGCATATGA+AGG | 0.510730 | 3.1:+49370168 | MS.gene05771:CDS |
| CATATCCTCACGTGCTAGCG+GGG | 0.512934 | 3.1:-49372214 | None:intergenic |
| CTTGCTTATGCTTTACGTGA+GGG | 0.518622 | 3.1:+49370051 | MS.gene05771:CDS |
| CAAGAAACAACCCGGCTCAA+AGG | 0.525961 | 3.1:+49371940 | MS.gene05771:CDS |
| ACGGTAGTGTATCGTCATGT+AGG | 0.541762 | 3.1:+49370112 | MS.gene05771:CDS |
| GGAAGGAATACGGAAGAAAG+AGG | 0.542787 | 3.1:+49370149 | MS.gene05771:CDS |
| CCTTGCTTATGCTTTACGTG+AGG | 0.544741 | 3.1:+49370050 | MS.gene05771:CDS |
| AACTTCTTTGAGGTGGGACA+CGG | 0.545922 | 3.1:-49372042 | None:intergenic |
| ATGGGCTGCATGTTATATGA+AGG | 0.546460 | 3.1:+49371133 | MS.gene05771:CDS |
| TTCTGATGCCATGCAACCAA+AGG | 0.548134 | 3.1:+49371913 | MS.gene05771:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.548940 | 3.1:+49370414 | MS.gene05771:CDS |
| GAAATTTGACACTAGAGAAG+AGG | 0.556802 | 3.1:+49370014 | MS.gene05771:CDS |
| CTGCCTTAATCCAGAGTCAT+CGG | 0.562647 | 3.1:-49370379 | None:intergenic |
| GCAGGGCATAGCGCTAATGT+TGG | 0.568818 | 3.1:+49370432 | MS.gene05771:CDS |
| CTTGGAAACAGGATGAAGAA+AGG | 0.571819 | 3.1:+49370966 | MS.gene05771:CDS |
| TTAACAACTAATATGGTCGA+TGG | 0.578359 | 3.1:+49372159 | MS.gene05771:CDS |
| CCCACCTCAAAGAAGTTCAC+AGG | 0.579192 | 3.1:+49372048 | MS.gene05771:CDS |
| CCTGTGAACTTCTTTGAGGT+GGG | 0.581279 | 3.1:-49372048 | None:intergenic |
| ATGAAGGAAGCATTAACACT+TGG | 0.584329 | 3.1:+49371149 | MS.gene05771:CDS |
| TCTGATGCCATGCAACCAAA+GGG | 0.584367 | 3.1:+49371914 | MS.gene05771:CDS |
| AGTCCTCACATAAGCTTGCA+AGG | 0.585698 | 3.1:+49371315 | MS.gene05771:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 3.1:+49370415 | MS.gene05771:CDS |
| AATCTTGCACAATGCCACAA+CGG | 0.597437 | 3.1:-49371673 | None:intergenic |
| ACATTTCGAAAGAGTTGTTG+GGG | 0.600812 | 3.1:+49371259 | MS.gene05771:CDS |
| AACATATCCTCACGTGCTAG+CGG | 0.615108 | 3.1:-49372216 | None:intergenic |
| CGCTAATGTTGGATTTACAG+AGG | 0.620951 | 3.1:+49370443 | MS.gene05771:CDS |
| TGACTCTGGATTAAGGCAGA+AGG | 0.626414 | 3.1:+49370383 | MS.gene05771:CDS |
| TGTCTCTAAGTTCATTAGAG+CGG | 0.630054 | 3.1:+49371757 | MS.gene05771:CDS |
| ATATCCTCACGTGCTAGCGG+GGG | 0.659146 | 3.1:-49372213 | None:intergenic |
| TGGACAAGAGAAGCCCGTTG+TGG | 0.666264 | 3.1:+49371659 | MS.gene05771:CDS |
| CCTCACGTAAAGCATAAGCA+AGG | 0.669280 | 3.1:-49370050 | None:intergenic |
| TAATGTTGGATTTACAGAGG+TGG | 0.672534 | 3.1:+49370446 | MS.gene05771:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.683097 | 3.1:-49371318 | None:intergenic |
| TTTACAAACAGGAAGAAAGA+CGG | 0.687186 | 3.1:+49370093 | MS.gene05771:CDS |
| AAGGGATTCAAGAAACAACC+CGG | 0.691658 | 3.1:+49371932 | MS.gene05771:CDS |
| GTAACAGAATGTCCAACACA+AGG | 0.694581 | 3.1:+49371854 | MS.gene05771:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGTTATTAATGT+AGG | + | chr3.1:49372331-49372350 | MS.gene05771:intron | 10.0% |
| !! | TAGAGAATTAACAACTAATA+TGG | + | chr3.1:49372152-49372171 | MS.gene05771:CDS | 20.0% |
| !!! | ATTACACTTTCAAGTATAAA+TGG | + | chr3.1:49370234-49370253 | MS.gene05771:CDS | 20.0% |
| !!! | TAATGTTGCATAATCATTTT+AGG | + | chr3.1:49372128-49372147 | MS.gene05771:intron | 20.0% |
| ! | AGACAATTCCATCATTTAAA+TGG | + | chr3.1:49370787-49370806 | MS.gene05771:intron | 25.0% |
| ! | CTTCTTAAAATATACCTATC+AGG | - | chr3.1:49371638-49371657 | None:intergenic | 25.0% |
| ! | TACAAAAAGACAAAGAAGTA+TGG | + | chr3.1:49370488-49370507 | MS.gene05771:intron | 25.0% |
| ! | TCAAACAACCATTTAAATGA+TGG | - | chr3.1:49370798-49370817 | None:intergenic | 25.0% |
| ! | TTCAAGTATAAATGGAAAGT+TGG | + | chr3.1:49370242-49370261 | MS.gene05771:CDS | 25.0% |
| !! | ATTCGATTTCTAGATAACTT+AGG | - | chr3.1:49371725-49371744 | None:intergenic | 25.0% |
| !! | TCAAATTTCATTCCAAGTTT+TGG | - | chr3.1:49370003-49370022 | None:intergenic | 25.0% |
| !! | TGTAAGAAGTATGATACATT+TGG | + | chr3.1:49371557-49371576 | MS.gene05771:CDS | 25.0% |
| !!! | ATAGGTATATTTTAAGAAGG+TGG | + | chr3.1:49371639-49371658 | MS.gene05771:CDS | 25.0% |
| !!! | CTGATAGGTATATTTTAAGA+AGG | + | chr3.1:49371636-49371655 | MS.gene05771:CDS | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | chr3.1:49370709-49370728 | None:intergenic | 30.0% | |
| AAACATTTCGAAAGAGTTGT+TGG | + | chr3.1:49371257-49371276 | MS.gene05771:CDS | 30.0% | |
| AAACCAGAAAAAAAAGCAAG+TGG | - | chr3.1:49370717-49370736 | None:intergenic | 30.0% | |
| AAATGATCGTACCTCTATAA+TGG | - | chr3.1:49370743-49370762 | None:intergenic | 30.0% | |
| AACAGATTACAAATGTGTTC+TGG | + | chr3.1:49370604-49370623 | MS.gene05771:intron | 30.0% | |
| AACATTTCGAAAGAGTTGTT+GGG | + | chr3.1:49371258-49371277 | MS.gene05771:CDS | 30.0% | |
| ACAAGCATATGAGATTGATA+TGG | + | chr3.1:49370356-49370375 | MS.gene05771:CDS | 30.0% | |
| ATAATCTTCATGGTTCATCT+TGG | + | chr3.1:49371081-49371100 | MS.gene05771:CDS | 30.0% | |
| CAAATATGATCTTGGATTAC+GGG | + | chr3.1:49370634-49370653 | MS.gene05771:intron | 30.0% | |
| CAGAATGGAATTAAACATCT+TGG | + | chr3.1:49370948-49370967 | MS.gene05771:intron | 30.0% | |
| CATCTGATATGCATAAAAGA+AGG | - | chr3.1:49370574-49370593 | None:intergenic | 30.0% | |
| CTTCTTACAACTACAAGTAA+TGG | - | chr3.1:49371546-49371565 | None:intergenic | 30.0% | |
| GAATTAAACATCTTGGAAAC+AGG | + | chr3.1:49370955-49370974 | MS.gene05771:CDS | 30.0% | |
| GCAAATATGATCTTGGATTA+CGG | + | chr3.1:49370633-49370652 | MS.gene05771:intron | 30.0% | |
| GTCAATGAACATAATCTTCA+TGG | + | chr3.1:49371071-49371090 | MS.gene05771:CDS | 30.0% | |
| GTGCATATGAAGGAAAAATT+CGG | + | chr3.1:49370178-49370197 | MS.gene05771:CDS | 30.0% | |
| TCTCTTGATTTAGTAGATCA+TGG | - | chr3.1:49370296-49370315 | None:intergenic | 30.0% | |
| TGATATGCATAAAAGAAGGA+CGG | - | chr3.1:49370570-49370589 | None:intergenic | 30.0% | |
| TTAACAACTAATATGGTCGA+TGG | + | chr3.1:49372159-49372178 | MS.gene05771:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | + | chr3.1:49370093-49370112 | MS.gene05771:CDS | 30.0% | |
| ! | AGAGTTAGTTTCATGTCTAA+TGG | - | chr3.1:49371450-49371469 | None:intergenic | 30.0% |
| ! | ATGTTGTCTAAAACCGAATT+TGG | + | chr3.1:49371217-49371236 | MS.gene05771:CDS | 30.0% |
| ! | CTTCTTTTATGCATATCAGA+TGG | + | chr3.1:49370572-49370591 | MS.gene05771:intron | 30.0% |
| ! | GAGTTAGTTTCATGTCTAAT+GGG | - | chr3.1:49371449-49371468 | None:intergenic | 30.0% |
| ! | TGTTGTCTAAAACCGAATTT+GGG | + | chr3.1:49371218-49371237 | MS.gene05771:CDS | 30.0% |
| ! | TTTGTTGTAAGGAAGGAATA+CGG | + | chr3.1:49370139-49370158 | MS.gene05771:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | + | chr3.1:49370128-49370147 | MS.gene05771:CDS | 30.0% |
| !! | TATAGAGGTACGATCATTTT+TGG | + | chr3.1:49370744-49370763 | MS.gene05771:intron | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCAT+TGG | + | chr3.1:49370659-49370678 | MS.gene05771:intron | 30.0% |
| AATTGCAGGATACCCAAATT+CGG | - | chr3.1:49371233-49371252 | None:intergenic | 35.0% | |
| ACATTTCGAAAGAGTTGTTG+GGG | + | chr3.1:49371259-49371278 | MS.gene05771:CDS | 35.0% | |
| AGCAAGTGCATGTATGAAAT+TGG | + | chr3.1:49371011-49371030 | MS.gene05771:CDS | 35.0% | |
| ATGTTAAGGTGATTCCTGAT+AGG | + | chr3.1:49371621-49371640 | MS.gene05771:CDS | 35.0% | |
| ATTTGAGCTGAACGATGTTA+AGG | + | chr3.1:49371607-49371626 | MS.gene05771:CDS | 35.0% | |
| CGAAATGTTTGAAGAATTGC+AGG | - | chr3.1:49371247-49371266 | None:intergenic | 35.0% | |
| GAAATTTGACACTAGAGAAG+AGG | + | chr3.1:49370014-49370033 | MS.gene05771:CDS | 35.0% | |
| GAGGATAAATGTGCATATGA+AGG | + | chr3.1:49370168-49370187 | MS.gene05771:CDS | 35.0% | |
| GTGTGATGCAAATATGATCT+TGG | + | chr3.1:49370626-49370645 | MS.gene05771:intron | 35.0% | |
| GTGTTACACAACTATGTTGA+TGG | + | chr3.1:49372240-49372259 | MS.gene05771:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | chr3.1:49370446-49370465 | MS.gene05771:CDS | 35.0% | |
| TATACCTGTGAACTTCTTTG+AGG | - | chr3.1:49372055-49372074 | None:intergenic | 35.0% | |
| TATGAAGGAAAAATTCGGAG+AGG | + | chr3.1:49370183-49370202 | MS.gene05771:CDS | 35.0% | |
| TCACCATTACTACTCCAAAT+GGG | + | chr3.1:49371353-49371372 | MS.gene05771:intron | 35.0% | |
| TGGCTTCTTCAAATGATGAT+TGG | + | chr3.1:49369974-49369993 | MS.gene05771:CDS | 35.0% | |
| TGTCTCTAAGTTCATTAGAG+CGG | + | chr3.1:49371757-49371776 | MS.gene05771:CDS | 35.0% | |
| TTAGAGTACGCTTTACAAAC+AGG | + | chr3.1:49370082-49370101 | MS.gene05771:CDS | 35.0% | |
| TTCACCATTACTACTCCAAA+TGG | + | chr3.1:49371352-49371371 | MS.gene05771:intron | 35.0% | |
| ! | AGACAAAGAAGTATGGTGTA+TGG | + | chr3.1:49370495-49370514 | MS.gene05771:intron | 35.0% |
| ! | ATCACTAATGAGAAGCATGA+AGG | + | chr3.1:49371485-49371504 | MS.gene05771:intron | 35.0% |
| ! | ATCTTGGATTACGGGTATTT+TGG | + | chr3.1:49370642-49370661 | MS.gene05771:intron | 35.0% |
| ! | GTATTTTCAACGACAGTTGT+TGG | + | chr3.1:49370539-49370558 | MS.gene05771:intron | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | + | chr3.1:49370729-49370748 | MS.gene05771:intron | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+GGG | + | chr3.1:49371679-49371698 | MS.gene05771:CDS | 35.0% |
| !! | AAGCAGATTTTGAGAAAGCT+TGG | + | chr3.1:49371039-49371058 | MS.gene05771:CDS | 35.0% |
| !! | AGATTTTGAGAAAGCTTGGT+TGG | + | chr3.1:49371043-49371062 | MS.gene05771:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | + | chr3.1:49370132-49370151 | MS.gene05771:CDS | 35.0% |
| !! | ATGAAGGAAGCATTAACACT+TGG | + | chr3.1:49371149-49371168 | MS.gene05771:CDS | 35.0% |
| !!! | AGACCACTTGCTTTTTTTTC+TGG | + | chr3.1:49370711-49370730 | MS.gene05771:intron | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr3.1:49370415-49370434 | MS.gene05771:CDS | 40.0% | |
| AAGGGATTCAAGAAACAACC+CGG | + | chr3.1:49371932-49371951 | MS.gene05771:CDS | 40.0% | |
| AATCTTGCACAATGCCACAA+CGG | - | chr3.1:49371676-49371695 | None:intergenic | 40.0% | |
| ACCAAAGTCAAGCAATGTCT+AGG | + | chr3.1:49370868-49370887 | MS.gene05771:intron | 40.0% | |
| CCAAAGTCAAGCAATGTCTA+GGG | + | chr3.1:49370869-49370888 | MS.gene05771:intron | 40.0% | |
| CGCTAATGTTGGATTTACAG+AGG | + | chr3.1:49370443-49370462 | MS.gene05771:CDS | 40.0% | |
| CTTGCTTATGCTTTACGTGA+GGG | + | chr3.1:49370051-49370070 | MS.gene05771:CDS | 40.0% | |
| CTTGGAAACAGGATGAAGAA+AGG | + | chr3.1:49370966-49370985 | MS.gene05771:CDS | 40.0% | |
| GATGATTGGAAGCCAAAACT+TGG | + | chr3.1:49369988-49370007 | MS.gene05771:CDS | 40.0% | |
| GCATCAGAACTCTCAAATGA+TGG | - | chr3.1:49371902-49371921 | None:intergenic | 40.0% | |
| GTAACAGAATGTCCAACACA+AGG | + | chr3.1:49371854-49371873 | MS.gene05771:CDS | 40.0% | |
| GTGTGTATATCTCTCCCATT+TGG | - | chr3.1:49371370-49371389 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr3.1:49371321-49371340 | None:intergenic | 40.0% | |
| TCATTGTCTCTACCTTGTGT+TGG | - | chr3.1:49371869-49371888 | None:intergenic | 40.0% | |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | chr3.1:49371133-49371152 | MS.gene05771:CDS | 40.0% |
| ! | GGCATTGTGCAAGATTTTAG+GGG | + | chr3.1:49371680-49371699 | MS.gene05771:CDS | 40.0% |
| ! | GTGGCATTGTGCAAGATTTT+AGG | + | chr3.1:49371678-49371697 | MS.gene05771:CDS | 40.0% |
| ! | TCTCCCATTTGGAGTAGTAA+TGG | - | chr3.1:49371359-49371378 | None:intergenic | 40.0% |
| !! | GCAAGATTTTAGGGGAAAAG+AGG | + | chr3.1:49371688-49371707 | MS.gene05771:CDS | 40.0% |
| !! | GGTTGTTTCTTGAATCCCTT+TGG | - | chr3.1:49371932-49371951 | None:intergenic | 40.0% |
| AACATATCCTCACGTGCTAG+CGG | - | chr3.1:49372219-49372238 | None:intergenic | 45.0% | |
| AAGAAACAACCCGGCTCAAA+GGG | + | chr3.1:49371941-49371960 | MS.gene05771:CDS | 45.0% | |
| AAGTGGTCTATTGGCATCGT+TGG | - | chr3.1:49370700-49370719 | None:intergenic | 45.0% | |
| ACGGTAGTGTATCGTCATGT+AGG | + | chr3.1:49370112-49370131 | MS.gene05771:CDS | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | + | chr3.1:49371315-49371334 | MS.gene05771:CDS | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | - | chr3.1:49370923-49370942 | None:intergenic | 45.0% | |
| ATCTTGCACAATGCCACAAC+GGG | - | chr3.1:49371675-49371694 | None:intergenic | 45.0% | |
| ATTGATATGGCCGATGACTC+TGG | + | chr3.1:49370369-49370388 | MS.gene05771:CDS | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr3.1:49370414-49370433 | MS.gene05771:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | - | chr3.1:49370912-49370931 | None:intergenic | 45.0% | |
| CCCTAGACATTGCTTGACTT+TGG | - | chr3.1:49370872-49370891 | None:intergenic | 45.0% | |
| CCTCACGTAAAGCATAAGCA+AGG | - | chr3.1:49370053-49370072 | None:intergenic | 45.0% | |
| CCTTGCTTATGCTTTACGTG+AGG | + | chr3.1:49370050-49370069 | MS.gene05771:CDS | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | + | chr3.1:49370916-49370935 | MS.gene05771:intron | 45.0% | |
| CTGCCTTAATCCAGAGTCAT+CGG | - | chr3.1:49370382-49370401 | None:intergenic | 45.0% | |
| CTTGAATCCCTTTGGTTGCA+TGG | - | chr3.1:49371924-49371943 | None:intergenic | 45.0% | |
| GATTGAGCGTGTTTACTTGC+AGG | - | chr3.1:49372019-49372038 | None:intergenic | 45.0% | |
| GGAAGGAATACGGAAGAAAG+AGG | + | chr3.1:49370149-49370168 | MS.gene05771:CDS | 45.0% | |
| GGCATCGTTGGTACAATATG+TGG | - | chr3.1:49370688-49370707 | None:intergenic | 45.0% | |
| GGTCAGTGAAGATCGTCTTT+GGG | - | chr3.1:49370851-49370870 | None:intergenic | 45.0% | |
| TATGCTTTACGTGAGGGCTT+CGG | + | chr3.1:49370057-49370076 | MS.gene05771:CDS | 45.0% | |
| TCTGATGCCATGCAACCAAA+GGG | + | chr3.1:49371914-49371933 | MS.gene05771:CDS | 45.0% | |
| TGACTCTGGATTAAGGCAGA+AGG | + | chr3.1:49370383-49370402 | MS.gene05771:CDS | 45.0% | |
| TGAGAAAGCTTGGTTGGACT+TGG | + | chr3.1:49371049-49371068 | MS.gene05771:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr3.1:49370852-49370871 | None:intergenic | 45.0% | |
| TTCTGATGCCATGCAACCAA+AGG | + | chr3.1:49371913-49371932 | MS.gene05771:CDS | 45.0% | |
| ! | ACATGGCACTTGTTGCAGAA+TGG | + | chr3.1:49370933-49370952 | MS.gene05771:intron | 45.0% |
| ! | ACCTGTGAACTTCTTTGAGG+TGG | - | chr3.1:49372052-49372071 | None:intergenic | 45.0% |
| !! | AACTTCTTTGAGGTGGGACA+CGG | - | chr3.1:49372045-49372064 | None:intergenic | 45.0% |
| !! | CCTGTGAACTTCTTTGAGGT+GGG | - | chr3.1:49372051-49372070 | None:intergenic | 45.0% |
| !!! | GCAGGAGCACTTCTTTTCTT+GGG | - | chr3.1:49372001-49372020 | None:intergenic | 45.0% |
| !!! | TGCAGGAGCACTTCTTTTCT+TGG | - | chr3.1:49372002-49372021 | None:intergenic | 45.0% |
| !! | TTATGAAATAAAAAAAAAAT+GGG | + | chr3.1:49371115-49371134 | MS.gene05771:CDS | 5.0% |
| !! | TTTATGAAATAAAAAAAAAA+TGG | + | chr3.1:49371114-49371133 | MS.gene05771:CDS | 5.0% |
| ACATATCCTCACGTGCTAGC+GGG | - | chr3.1:49372218-49372237 | None:intergenic | 50.0% | |
| CAAGAAACAACCCGGCTCAA+AGG | + | chr3.1:49371940-49371959 | MS.gene05771:CDS | 50.0% | |
| CCCACCTCAAAGAAGTTCAC+AGG | + | chr3.1:49372048-49372067 | MS.gene05771:CDS | 50.0% | |
| TCGCTTAGTTCCCTTTGAGC+CGG | - | chr3.1:49371954-49371973 | None:intergenic | 50.0% | |
| TGGCCGATGACTCTGGATTA+AGG | + | chr3.1:49370376-49370395 | MS.gene05771:CDS | 50.0% | |
| ! | AGTATGGTGTATGGTGACGC+TGG | + | chr3.1:49370504-49370523 | MS.gene05771:intron | 50.0% |
| ! | TTTTCTTGGGCTGACGCTCA+AGG | - | chr3.1:49371988-49372007 | None:intergenic | 50.0% |
| ATATCCTCACGTGCTAGCGG+GGG | - | chr3.1:49372216-49372235 | None:intergenic | 55.0% | |
| CATATCCTCACGTGCTAGCG+GGG | - | chr3.1:49372217-49372236 | None:intergenic | 55.0% | |
| CGCTTAGTTCCCTTTGAGCC+GGG | - | chr3.1:49371953-49371972 | None:intergenic | 55.0% | |
| CTAGCGGGGGCTCATAAGTT+GGG | - | chr3.1:49372203-49372222 | None:intergenic | 55.0% | |
| GCAGGGCATAGCGCTAATGT+TGG | + | chr3.1:49370432-49370451 | MS.gene05771:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | + | chr3.1:49370903-49370922 | MS.gene05771:intron | 55.0% | |
| TAGCGGGGGCTCATAAGTTG+GGG | - | chr3.1:49372202-49372221 | None:intergenic | 55.0% | |
| TGGACAAGAGAAGCCCGTTG+TGG | + | chr3.1:49371659-49371678 | MS.gene05771:CDS | 55.0% | |
| GCTAGCGGGGGCTCATAAGT+TGG | - | chr3.1:49372204-49372223 | None:intergenic | 60.0% | |
| ! | AGCGGGGGCTCATAAGTTGG+GGG | - | chr3.1:49372201-49372220 | None:intergenic | 60.0% |
| ! | GGGCTCATAAGTTGGGGGCG+CGG | - | chr3.1:49372196-49372215 | None:intergenic | 65.0% |
| TGAGCCCCCGCTAGCACGTG+AGG | + | chr3.1:49372209-49372228 | MS.gene05771:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 49369973 | 49372363 | 49369973 | ID=MS.gene05771 |
| chr3.1 | mRNA | 49369973 | 49372363 | 49369973 | ID=MS.gene05771.t1;Parent=MS.gene05771 |
| chr3.1 | exon | 49369973 | 49370470 | 49369973 | ID=MS.gene05771.t1.exon1;Parent=MS.gene05771.t1 |
| chr3.1 | CDS | 49369973 | 49370470 | 49369973 | ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1 |
| chr3.1 | exon | 49370951 | 49371336 | 49370951 | ID=MS.gene05771.t1.exon2;Parent=MS.gene05771.t1 |
| chr3.1 | CDS | 49370951 | 49371336 | 49370951 | ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1 |
| chr3.1 | exon | 49371556 | 49372069 | 49371556 | ID=MS.gene05771.t1.exon3;Parent=MS.gene05771.t1 |
| chr3.1 | CDS | 49371556 | 49372069 | 49371556 | ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1 |
| chr3.1 | exon | 49372150 | 49372261 | 49372150 | ID=MS.gene05771.t1.exon4;Parent=MS.gene05771.t1 |
| chr3.1 | CDS | 49372150 | 49372261 | 49372150 | ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1 |
| chr3.1 | exon | 49372353 | 49372363 | 49372353 | ID=MS.gene05771.t1.exon5;Parent=MS.gene05771.t1 |
| chr3.1 | CDS | 49372353 | 49372363 | 49372353 | ID=cds.MS.gene05771.t1;Parent=MS.gene05771.t1 |
| Gene Sequence |
| Protein sequence |
