Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070883.t1 | XP_003612994.1 | 95.4 | 302 | 4 | 4 | 1 | 300 | 43 | 336 | 1.30E-132 | 482.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070883.t1 | Q9LSL6 | 36.8 | 315 | 145 | 13 | 1 | 300 | 41 | 316 | 2.1e-35 | 151.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070883.t1 | G7KGJ7 | 95.4 | 302 | 4 | 4 | 1 | 300 | 43 | 336 | 9.3e-133 | 482.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070883.t1 | TF | C2C2-Dof |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055358 | MS.gene070883 | 0.821039 | 4.99E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070883.t1 | MTR_5g031440 | 95.364 | 302 | 4 | 4 | 1 | 300 | 43 | 336 | 0.0 | 582 |
| MS.gene070883.t1 | MTR_8g068210 | 48.657 | 335 | 109 | 14 | 1 | 300 | 32 | 338 | 7.49e-77 | 238 |
| MS.gene070883.t1 | MTR_8g479350 | 71.250 | 80 | 23 | 0 | 1 | 80 | 68 | 147 | 2.15e-36 | 133 |
| MS.gene070883.t1 | MTR_2g096740 | 60.000 | 95 | 38 | 0 | 1 | 95 | 62 | 156 | 1.05e-35 | 130 |
| MS.gene070883.t1 | MTR_2g096740 | 60.000 | 95 | 38 | 0 | 1 | 95 | 77 | 171 | 1.18e-35 | 130 |
| MS.gene070883.t1 | MTR_4g063780 | 65.169 | 89 | 22 | 2 | 1 | 80 | 75 | 163 | 5.46e-34 | 127 |
| MS.gene070883.t1 | MTR_4g088580 | 68.000 | 75 | 24 | 0 | 2 | 76 | 56 | 130 | 1.37e-32 | 124 |
| MS.gene070883.t1 | MTR_8g027295 | 45.455 | 154 | 67 | 5 | 1 | 141 | 24 | 173 | 2.24e-32 | 120 |
| MS.gene070883.t1 | MTR_7g059400 | 59.091 | 110 | 31 | 3 | 2 | 102 | 77 | 181 | 5.56e-32 | 122 |
| MS.gene070883.t1 | MTR_7g024670 | 80.000 | 60 | 12 | 0 | 2 | 61 | 78 | 137 | 6.58e-31 | 119 |
| MS.gene070883.t1 | MTR_4g022370 | 81.818 | 55 | 10 | 0 | 1 | 55 | 82 | 136 | 3.65e-30 | 117 |
| MS.gene070883.t1 | MTR_3g090430 | 70.588 | 68 | 17 | 1 | 3 | 67 | 53 | 120 | 8.96e-30 | 115 |
| MS.gene070883.t1 | MTR_4g461080 | 86.792 | 53 | 7 | 0 | 1 | 53 | 29 | 81 | 1.00e-29 | 114 |
| MS.gene070883.t1 | MTR_2g093220 | 83.636 | 55 | 9 | 0 | 1 | 55 | 40 | 94 | 1.23e-29 | 114 |
| MS.gene070883.t1 | MTR_4g109980 | 88.235 | 51 | 6 | 0 | 1 | 51 | 40 | 90 | 2.49e-29 | 114 |
| MS.gene070883.t1 | MTR_2g014060 | 90.196 | 51 | 5 | 0 | 2 | 52 | 26 | 76 | 6.78e-29 | 113 |
| MS.gene070883.t1 | MTR_3g091820 | 80.000 | 55 | 11 | 0 | 1 | 55 | 43 | 97 | 8.76e-29 | 112 |
| MS.gene070883.t1 | MTR_8g015840 | 74.603 | 63 | 15 | 1 | 1 | 63 | 20 | 81 | 1.26e-28 | 109 |
| MS.gene070883.t1 | MTR_1g056810 | 84.906 | 53 | 8 | 0 | 3 | 55 | 14 | 66 | 1.57e-28 | 111 |
| MS.gene070883.t1 | MTR_3g077750 | 84.314 | 51 | 8 | 0 | 1 | 51 | 61 | 111 | 3.96e-28 | 111 |
| MS.gene070883.t1 | MTR_1g077600 | 78.182 | 55 | 12 | 0 | 1 | 55 | 43 | 97 | 9.21e-28 | 108 |
| MS.gene070883.t1 | MTR_1g077600 | 78.182 | 55 | 12 | 0 | 1 | 55 | 43 | 97 | 1.12e-27 | 108 |
| MS.gene070883.t1 | MTR_2g014170 | 83.673 | 49 | 8 | 0 | 1 | 49 | 45 | 93 | 9.51e-27 | 107 |
| MS.gene070883.t1 | MTR_8g079060 | 74.545 | 55 | 14 | 0 | 1 | 55 | 29 | 83 | 1.19e-26 | 104 |
| MS.gene070883.t1 | MTR_2g059540 | 83.673 | 49 | 8 | 0 | 1 | 49 | 31 | 79 | 1.20e-26 | 104 |
| MS.gene070883.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 1 | 57 | 50 | 105 | 6.34e-26 | 104 |
| MS.gene070883.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 1 | 57 | 16 | 71 | 6.99e-26 | 103 |
| MS.gene070883.t1 | MTR_2g013370 | 71.930 | 57 | 15 | 1 | 1 | 57 | 46 | 101 | 1.44e-25 | 103 |
| MS.gene070883.t1 | MTR_6g012450 | 72.222 | 54 | 15 | 0 | 1 | 54 | 136 | 189 | 7.76e-24 | 101 |
| MS.gene070883.t1 | MTR_4g082060 | 64.407 | 59 | 21 | 0 | 1 | 59 | 122 | 180 | 1.16e-23 | 100 |
| MS.gene070883.t1 | MTR_2g016030 | 70.370 | 54 | 16 | 0 | 1 | 54 | 47 | 100 | 1.25e-23 | 95.1 |
| MS.gene070883.t1 | MTR_7g010950 | 70.370 | 54 | 16 | 0 | 1 | 54 | 135 | 188 | 1.25e-23 | 100 |
| MS.gene070883.t1 | MTR_8g044220 | 48.936 | 94 | 37 | 2 | 1 | 83 | 118 | 211 | 2.34e-23 | 99.4 |
| MS.gene070883.t1 | MTR_7g086780 | 67.241 | 58 | 19 | 0 | 1 | 58 | 99 | 156 | 2.62e-23 | 99.4 |
| MS.gene070883.t1 | MTR_3g435480 | 66.102 | 59 | 20 | 0 | 1 | 59 | 136 | 194 | 4.81e-23 | 99.0 |
| MS.gene070883.t1 | MTR_6g027450 | 62.069 | 58 | 22 | 0 | 1 | 58 | 89 | 146 | 8.42e-23 | 96.7 |
| MS.gene070883.t1 | MTR_6g027460 | 62.069 | 58 | 22 | 0 | 1 | 58 | 96 | 153 | 4.99e-22 | 95.1 |
| MS.gene070883.t1 | MTR_5g041420 | 68.519 | 54 | 17 | 0 | 1 | 54 | 138 | 191 | 1.02e-21 | 93.6 |
| MS.gene070883.t1 | MTR_5g041530 | 68.519 | 54 | 17 | 0 | 1 | 54 | 140 | 193 | 1.66e-21 | 93.6 |
| MS.gene070883.t1 | MTR_5g041380 | 57.576 | 66 | 28 | 0 | 1 | 66 | 127 | 192 | 2.79e-20 | 90.1 |
| MS.gene070883.t1 | MTR_5g041400 | 64.815 | 54 | 19 | 0 | 1 | 54 | 119 | 172 | 4.24e-20 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070883.t1 | AT5G65590 | 43.648 | 307 | 135 | 16 | 1 | 300 | 41 | 316 | 1.52e-62 | 201 |
| MS.gene070883.t1 | AT5G60200 | 76.562 | 64 | 15 | 0 | 1 | 64 | 55 | 118 | 6.09e-33 | 122 |
| MS.gene070883.t1 | AT1G51700 | 80.000 | 65 | 12 | 1 | 1 | 64 | 33 | 97 | 1.00e-32 | 119 |
| MS.gene070883.t1 | AT2G28510 | 45.087 | 173 | 84 | 5 | 3 | 174 | 50 | 212 | 1.27e-32 | 122 |
| MS.gene070883.t1 | AT2G37590 | 82.456 | 57 | 10 | 0 | 1 | 57 | 89 | 145 | 2.15e-32 | 122 |
| MS.gene070883.t1 | AT3G55370 | 76.562 | 64 | 15 | 0 | 1 | 64 | 76 | 139 | 1.14e-31 | 120 |
| MS.gene070883.t1 | AT3G55370 | 76.562 | 64 | 15 | 0 | 1 | 64 | 76 | 139 | 1.66e-31 | 120 |
| MS.gene070883.t1 | AT1G07640 | 85.455 | 55 | 8 | 0 | 1 | 55 | 21 | 75 | 2.30e-31 | 118 |
| MS.gene070883.t1 | AT3G55370 | 76.562 | 64 | 15 | 0 | 1 | 64 | 121 | 184 | 2.42e-31 | 120 |
| MS.gene070883.t1 | AT1G07640 | 85.455 | 55 | 8 | 0 | 1 | 55 | 77 | 131 | 2.95e-31 | 119 |
| MS.gene070883.t1 | AT3G21270 | 88.679 | 53 | 6 | 0 | 1 | 53 | 29 | 81 | 4.15e-31 | 115 |
| MS.gene070883.t1 | AT1G07640 | 85.455 | 55 | 8 | 0 | 1 | 55 | 85 | 139 | 4.25e-31 | 119 |
| MS.gene070883.t1 | AT3G52440 | 61.053 | 95 | 26 | 2 | 3 | 97 | 27 | 110 | 4.80e-31 | 117 |
| MS.gene070883.t1 | AT3G52440 | 61.053 | 95 | 26 | 2 | 3 | 97 | 46 | 129 | 8.87e-31 | 116 |
| MS.gene070883.t1 | AT2G28810 | 84.615 | 52 | 8 | 0 | 1 | 52 | 77 | 128 | 2.08e-30 | 117 |
| MS.gene070883.t1 | AT5G02460 | 83.636 | 55 | 9 | 0 | 1 | 55 | 95 | 149 | 2.10e-30 | 118 |
| MS.gene070883.t1 | AT5G60850 | 79.310 | 58 | 12 | 0 | 1 | 58 | 51 | 108 | 3.48e-30 | 116 |
| MS.gene070883.t1 | AT2G28810 | 84.615 | 52 | 8 | 0 | 1 | 52 | 94 | 145 | 3.66e-30 | 117 |
| MS.gene070883.t1 | AT4G38000 | 66.250 | 80 | 26 | 1 | 1 | 79 | 41 | 120 | 2.22e-29 | 112 |
| MS.gene070883.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 1 | 57 | 27 | 83 | 2.50e-29 | 114 |
| MS.gene070883.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 1 | 57 | 51 | 107 | 4.05e-29 | 114 |
| MS.gene070883.t1 | AT3G45610 | 72.581 | 62 | 17 | 0 | 1 | 62 | 40 | 101 | 4.28e-29 | 111 |
| MS.gene070883.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 62 | 163 | 9.61e-29 | 111 |
| MS.gene070883.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 62 | 163 | 9.61e-29 | 111 |
| MS.gene070883.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 74 | 175 | 9.91e-29 | 112 |
| MS.gene070883.t1 | AT4G21050 | 73.333 | 60 | 16 | 0 | 3 | 62 | 26 | 85 | 1.28e-28 | 109 |
| MS.gene070883.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 62 | 163 | 1.38e-28 | 112 |
| MS.gene070883.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 74 | 175 | 1.60e-28 | 112 |
| MS.gene070883.t1 | AT1G21340 | 70.968 | 62 | 18 | 0 | 3 | 64 | 40 | 101 | 1.81e-28 | 110 |
| MS.gene070883.t1 | AT4G24060 | 78.182 | 55 | 12 | 0 | 1 | 55 | 53 | 107 | 5.25e-27 | 108 |
| MS.gene070883.t1 | AT5G62940 | 84.000 | 50 | 8 | 0 | 2 | 51 | 74 | 123 | 5.94e-27 | 108 |
| MS.gene070883.t1 | AT4G00940 | 79.630 | 54 | 11 | 0 | 3 | 56 | 70 | 123 | 6.78e-27 | 107 |
| MS.gene070883.t1 | AT4G00940 | 79.630 | 54 | 11 | 0 | 3 | 56 | 70 | 123 | 6.78e-27 | 107 |
| MS.gene070883.t1 | AT4G00940 | 79.630 | 54 | 11 | 0 | 3 | 56 | 70 | 123 | 6.78e-27 | 107 |
| MS.gene070883.t1 | AT3G50410 | 74.545 | 55 | 14 | 0 | 1 | 55 | 30 | 84 | 2.21e-26 | 104 |
| MS.gene070883.t1 | AT5G66940 | 64.516 | 62 | 22 | 0 | 1 | 62 | 32 | 93 | 1.43e-25 | 102 |
| MS.gene070883.t1 | AT2G46590 | 81.250 | 48 | 9 | 0 | 1 | 48 | 68 | 115 | 2.00e-24 | 101 |
| MS.gene070883.t1 | AT2G46590 | 81.250 | 48 | 9 | 0 | 1 | 48 | 80 | 127 | 2.33e-24 | 101 |
| MS.gene070883.t1 | AT1G64620 | 78.000 | 50 | 11 | 0 | 1 | 50 | 49 | 98 | 2.77e-24 | 101 |
| MS.gene070883.t1 | AT3G47500 | 55.422 | 83 | 33 | 1 | 1 | 83 | 110 | 188 | 1.62e-23 | 100 |
| MS.gene070883.t1 | AT2G34140 | 70.370 | 54 | 16 | 0 | 1 | 54 | 58 | 111 | 2.86e-23 | 94.4 |
| MS.gene070883.t1 | AT4G21040 | 66.667 | 63 | 20 | 1 | 3 | 64 | 27 | 89 | 3.07e-23 | 95.9 |
| MS.gene070883.t1 | AT1G29160 | 70.370 | 54 | 16 | 0 | 1 | 54 | 62 | 115 | 3.20e-23 | 94.4 |
| MS.gene070883.t1 | AT5G62430 | 70.370 | 54 | 16 | 0 | 1 | 54 | 54 | 107 | 3.60e-23 | 97.1 |
| MS.gene070883.t1 | AT1G69570 | 66.102 | 59 | 20 | 0 | 1 | 59 | 132 | 190 | 4.38e-23 | 98.6 |
| MS.gene070883.t1 | AT5G39660 | 70.370 | 54 | 16 | 0 | 1 | 54 | 138 | 191 | 5.45e-23 | 98.6 |
| MS.gene070883.t1 | AT5G39660 | 70.370 | 54 | 16 | 0 | 1 | 54 | 138 | 191 | 5.45e-23 | 98.6 |
| MS.gene070883.t1 | AT5G39660 | 70.370 | 54 | 16 | 0 | 1 | 54 | 138 | 191 | 5.45e-23 | 98.6 |
| MS.gene070883.t1 | AT1G26790 | 52.381 | 84 | 39 | 1 | 1 | 84 | 111 | 193 | 7.81e-23 | 97.4 |
| MS.gene070883.t1 | AT4G21080 | 65.079 | 63 | 21 | 1 | 3 | 64 | 27 | 89 | 1.26e-22 | 94.7 |
| MS.gene070883.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 1 | 49 | 29 | 77 | 1.90e-22 | 93.2 |
| MS.gene070883.t1 | AT4G21030 | 50.000 | 64 | 30 | 1 | 3 | 64 | 23 | 86 | 4.50e-14 | 70.1 |
Find 40 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGATTCTGAAACAAAA+TGG | 0.209045 | 5.4:-21506928 | None:intergenic |
| TTCTCTTTCTTCACCTTCCA+TGG | 0.316516 | 5.4:+21506518 | MS.gene070883:CDS |
| TTATAATTACCTGATGAAAA+AGG | 0.326439 | 5.4:-21506705 | None:intergenic |
| GCAAAACATGTAGAAGATAT+TGG | 0.332074 | 5.4:+21506343 | MS.gene070883:CDS |
| TTTCTCCAAAAGATGAAAAC+TGG | 0.363395 | 5.4:-21506623 | None:intergenic |
| TCTTCTTCTTCAGAGCTTGT+TGG | 0.374369 | 5.4:+21506477 | MS.gene070883:CDS |
| TGGAATGGTGGTGGTGTTCA+TGG | 0.417264 | 5.4:+21507101 | MS.gene070883:CDS |
| TGTTGGGAGAGTCACATCTT+GGG | 0.434967 | 5.4:-21506269 | None:intergenic |
| TAGGAGTAGTAGAAATTTGA+GGG | 0.447158 | 5.4:-21506593 | None:intergenic |
| TGTAGAAGATATTGGACAAA+AGG | 0.447881 | 5.4:+21506351 | MS.gene070883:CDS |
| ATGGTGGTGGTGTTCATGGT+TGG | 0.454006 | 5.4:+21507105 | MS.gene070883:CDS |
| TGATTATGAAGTTGAAGTCT+TGG | 0.460479 | 5.4:-21506570 | None:intergenic |
| GTGTTGGGAGAGTCACATCT+TGG | 0.462000 | 5.4:-21506270 | None:intergenic |
| TCAAGATTCTGAAACAAAAT+GGG | 0.479207 | 5.4:-21506927 | None:intergenic |
| TCTTCTTCAGAGCTTGTTGG+TGG | 0.480751 | 5.4:+21506480 | MS.gene070883:CDS |
| GTAGCTTCCAGTGCAAGTCT+TGG | 0.484387 | 5.4:-21506815 | None:intergenic |
| ATAGGAGTAGTAGAAATTTG+AGG | 0.486036 | 5.4:-21506594 | None:intergenic |
| CGCAACGTTCCAATCGGTGG+TGG | 0.493729 | 5.4:+21506384 | MS.gene070883:CDS |
| CCTACTGCAAGTGGTGGAGC+TGG | 0.519120 | 5.4:+21507059 | MS.gene070883:CDS |
| TTTCTACATCCACCACCGAT+TGG | 0.522050 | 5.4:-21506393 | None:intergenic |
| GGTGGAGCTGGACATGATAG+TGG | 0.524755 | 5.4:+21507071 | MS.gene070883:CDS |
| AATTATAATGGTGCAATACA+AGG | 0.531532 | 5.4:+21506720 | MS.gene070883:CDS |
| GCTTTACGCAACGTTCCAAT+CGG | 0.531943 | 5.4:+21506378 | MS.gene070883:CDS |
| CTATGAACCAAGACTTGCAC+TGG | 0.534331 | 5.4:+21506808 | MS.gene070883:CDS |
| TGGAAGGTGAAGAAAGAGAA+TGG | 0.535036 | 5.4:-21506515 | None:intergenic |
| GACATGATAGTGGAAGCAAC+TGG | 0.536262 | 5.4:+21507081 | MS.gene070883:CDS |
| TGAAACAAAATGGGTTGTAG+TGG | 0.541174 | 5.4:-21506918 | None:intergenic |
| TCTGTTGGAAATTCAAGAAG+AGG | 0.543611 | 5.4:+21506978 | MS.gene070883:CDS |
| GATGAAAACTGGTTATACAT+AGG | 0.549549 | 5.4:-21506612 | None:intergenic |
| AGAAGATATTGGACAAAAGG+TGG | 0.584366 | 5.4:+21506354 | MS.gene070883:CDS |
| ACTACCAAGATGAAAATCCA+TGG | 0.598151 | 5.4:-21506535 | None:intergenic |
| CCAAGATGAAAATCCATGGA+AGG | 0.609817 | 5.4:-21506531 | None:intergenic |
| TTACGCAACGTTCCAATCGG+TGG | 0.621443 | 5.4:+21506381 | MS.gene070883:CDS |
| GCTGCTACACCTACTGCAAG+TGG | 0.630022 | 5.4:+21507050 | MS.gene070883:CDS |
| CCAGCTCCACCACTTGCAGT+AGG | 0.633722 | 5.4:-21507059 | None:intergenic |
| GGAAGCAACTGGAATGGTGG+TGG | 0.653313 | 5.4:+21507092 | MS.gene070883:CDS |
| AGTGGAAGCAACTGGAATGG+TGG | 0.673960 | 5.4:+21507089 | MS.gene070883:CDS |
| GCTACACCTACTGCAAGTGG+TGG | 0.683188 | 5.4:+21507053 | MS.gene070883:CDS |
| GATAGTGGAAGCAACTGGAA+TGG | 0.689100 | 5.4:+21507086 | MS.gene070883:CDS |
| GAGAAGATACAGCAACTGAG+TGG | 0.693063 | 5.4:+21507000 | MS.gene070883:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATTACCTGATGAAAA+AGG | - | chr5.4:21506708-21506727 | None:intergenic | 20.0% |
| !!! | TTTTCATCAGGTAATTATAA+TGG | + | chr5.4:21506708-21506727 | MS.gene070883:CDS | 20.0% |
| ! | AATTATAATGGTGCAATACA+AGG | + | chr5.4:21506720-21506739 | MS.gene070883:CDS | 25.0% |
| !! | CAAAGATTATCTATGCTTTT+TGG | + | chr5.4:21506843-21506862 | MS.gene070883:CDS | 25.0% |
| !! | TATAACCAGTTTTCATCTTT+TGG | + | chr5.4:21506618-21506637 | MS.gene070883:CDS | 25.0% |
| !!! | TCAAGATTCTGAAACAAAAT+GGG | - | chr5.4:21506930-21506949 | None:intergenic | 25.0% |
| ATAGGAGTAGTAGAAATTTG+AGG | - | chr5.4:21506597-21506616 | None:intergenic | 30.0% | |
| GATGAAAACTGGTTATACAT+AGG | - | chr5.4:21506615-21506634 | None:intergenic | 30.0% | |
| GCAAAACATGTAGAAGATAT+TGG | + | chr5.4:21506343-21506362 | MS.gene070883:CDS | 30.0% | |
| TAGGAGTAGTAGAAATTTGA+GGG | - | chr5.4:21506596-21506615 | None:intergenic | 30.0% | |
| TGATTATGAAGTTGAAGTCT+TGG | - | chr5.4:21506573-21506592 | None:intergenic | 30.0% | |
| TGTAGAAGATATTGGACAAA+AGG | + | chr5.4:21506351-21506370 | MS.gene070883:CDS | 30.0% | |
| TTTCTCCAAAAGATGAAAAC+TGG | - | chr5.4:21506626-21506645 | None:intergenic | 30.0% | |
| ! | TAGTAGCAGAATTTTGTGTT+GGG | - | chr5.4:21506288-21506307 | None:intergenic | 30.0% |
| !! | AGATTATCTATGCTTTTTGG+TGG | + | chr5.4:21506846-21506865 | MS.gene070883:CDS | 30.0% |
| !! | ATGAACTATCCTTTTTCATC+AGG | + | chr5.4:21506696-21506715 | MS.gene070883:CDS | 30.0% |
| !! | CATTTTGTTTCAGAATCTTG+AGG | + | chr5.4:21506929-21506948 | MS.gene070883:CDS | 30.0% |
| !! | CTCAAGATTCTGAAACAAAA+TGG | - | chr5.4:21506931-21506950 | None:intergenic | 30.0% |
| !!! | TGGTTTTTTGGGAATTCTTA+TGG | + | chr5.4:21507020-21507039 | MS.gene070883:CDS | 30.0% |
| ACTACCAAGATGAAAATCCA+TGG | - | chr5.4:21506538-21506557 | None:intergenic | 35.0% | |
| AGAAGATATTGGACAAAAGG+TGG | + | chr5.4:21506354-21506373 | MS.gene070883:CDS | 35.0% | |
| TCTGTTGGAAATTCAAGAAG+AGG | + | chr5.4:21506978-21506997 | MS.gene070883:CDS | 35.0% | |
| ! | ATGGATTTTCATCTTGGTAG+TGG | + | chr5.4:21506537-21506556 | MS.gene070883:CDS | 35.0% |
| ! | CATGTTTTGCAGAAATGTCT+TGG | - | chr5.4:21506333-21506352 | None:intergenic | 35.0% |
| ! | GTAGTAGCAGAATTTTGTGT+TGG | - | chr5.4:21506289-21506308 | None:intergenic | 35.0% |
| !! | GATGATAGAGCTTTTTCTGT+TGG | + | chr5.4:21506963-21506982 | MS.gene070883:CDS | 35.0% |
| !! | TGAAACAAAATGGGTTGTAG+TGG | - | chr5.4:21506921-21506940 | None:intergenic | 35.0% |
| !! | TTATCTATGCTTTTTGGTGG+TGG | + | chr5.4:21506849-21506868 | MS.gene070883:CDS | 35.0% |
| CCAAGATGAAAATCCATGGA+AGG | - | chr5.4:21506534-21506553 | None:intergenic | 40.0% | |
| TCTTCTTCTTCAGAGCTTGT+TGG | + | chr5.4:21506477-21506496 | MS.gene070883:CDS | 40.0% | |
| TGGAAGGTGAAGAAAGAGAA+TGG | - | chr5.4:21506518-21506537 | None:intergenic | 40.0% | |
| TTCTCTTTCTTCACCTTCCA+TGG | + | chr5.4:21506518-21506537 | MS.gene070883:CDS | 40.0% | |
| ! | CCTTCCATGGATTTTCATCT+TGG | + | chr5.4:21506531-21506550 | MS.gene070883:CDS | 40.0% |
| !!! | ACAGCAACTGAGTGGTTTTT+TGG | + | chr5.4:21507008-21507027 | MS.gene070883:CDS | 40.0% |
| !!! | CAGCAACTGAGTGGTTTTTT+GGG | + | chr5.4:21507009-21507028 | MS.gene070883:CDS | 40.0% |
| CTATGAACCAAGACTTGCAC+TGG | + | chr5.4:21506808-21506827 | MS.gene070883:CDS | 45.0% | |
| GAGAAGATACAGCAACTGAG+TGG | + | chr5.4:21507000-21507019 | MS.gene070883:CDS | 45.0% | |
| GCTTTACGCAACGTTCCAAT+CGG | + | chr5.4:21506378-21506397 | MS.gene070883:CDS | 45.0% | |
| TGTTGGGAGAGTCACATCTT+GGG | - | chr5.4:21506272-21506291 | None:intergenic | 45.0% | |
| TTTCTACATCCACCACCGAT+TGG | - | chr5.4:21506396-21506415 | None:intergenic | 45.0% | |
| !! | GACATGATAGTGGAAGCAAC+TGG | + | chr5.4:21507081-21507100 | MS.gene070883:CDS | 45.0% |
| !! | GATAGTGGAAGCAACTGGAA+TGG | + | chr5.4:21507086-21507105 | MS.gene070883:CDS | 45.0% |
| !! | TCTTCTTCAGAGCTTGTTGG+TGG | + | chr5.4:21506480-21506499 | MS.gene070883:CDS | 45.0% |
| AGTGGAAGCAACTGGAATGG+TGG | + | chr5.4:21507089-21507108 | MS.gene070883:CDS | 50.0% | |
| GTAGCTTCCAGTGCAAGTCT+TGG | - | chr5.4:21506818-21506837 | None:intergenic | 50.0% | |
| GTGTTGGGAGAGTCACATCT+TGG | - | chr5.4:21506273-21506292 | None:intergenic | 50.0% | |
| TTACGCAACGTTCCAATCGG+TGG | + | chr5.4:21506381-21506400 | MS.gene070883:CDS | 50.0% | |
| !! | ATGGTGGTGGTGTTCATGGT+TGG | + | chr5.4:21507105-21507124 | MS.gene070883:CDS | 50.0% |
| !! | TGGAATGGTGGTGGTGTTCA+TGG | + | chr5.4:21507101-21507120 | MS.gene070883:CDS | 50.0% |
| GCTACACCTACTGCAAGTGG+TGG | + | chr5.4:21507053-21507072 | MS.gene070883:CDS | 55.0% | |
| GCTGCTACACCTACTGCAAG+TGG | + | chr5.4:21507050-21507069 | MS.gene070883:CDS | 55.0% | |
| GGAAGCAACTGGAATGGTGG+TGG | + | chr5.4:21507092-21507111 | MS.gene070883:CDS | 55.0% | |
| GGTGGAGCTGGACATGATAG+TGG | + | chr5.4:21507071-21507090 | MS.gene070883:CDS | 55.0% | |
| CCAGCTCCACCACTTGCAGT+AGG | - | chr5.4:21507062-21507081 | None:intergenic | 60.0% | |
| CGCAACGTTCCAATCGGTGG+TGG | + | chr5.4:21506384-21506403 | MS.gene070883:CDS | 60.0% | |
| ! | CCTACTGCAAGTGGTGGAGC+TGG | + | chr5.4:21507059-21507078 | MS.gene070883:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 21506261 | 21507163 | 21506261 | ID=MS.gene070883 |
| chr5.4 | mRNA | 21506261 | 21507163 | 21506261 | ID=MS.gene070883.t1;Parent=MS.gene070883 |
| chr5.4 | exon | 21506261 | 21507163 | 21506261 | ID=MS.gene070883.t1.exon1;Parent=MS.gene070883.t1 |
| chr5.4 | CDS | 21506261 | 21507163 | 21506261 | ID=cds.MS.gene070883.t1;Parent=MS.gene070883.t1 |
| Gene Sequence |
| Protein sequence |
