Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070920.t1 | XP_003614532.1 | 99.1 | 216 | 2 | 0 | 1 | 216 | 11 | 226 | 5.90E-111 | 410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070920.t1 | Q9FX64 | 57.9 | 216 | 91 | 0 | 1 | 216 | 11 | 226 | 4.9e-58 | 225.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070920.t1 | G7JZE5 | 99.1 | 216 | 2 | 0 | 1 | 216 | 11 | 226 | 4.2e-111 | 410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052860 | MS.gene070920 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene070920 | 0.811145 | 8.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGGGAAGATTTCGTTTA+AGG | 0.114438 | 5.1:+43329254 | MS.gene070920:CDS |
| TAAGGATCCCAAAGAATTTA+AGG | 0.146216 | 5.1:+43331366 | MS.gene070920:CDS |
| AAAAGAAACCTTAAATTCTT+TGG | 0.192821 | 5.1:-43331374 | None:intergenic |
| AAAGAATGTTCAGGGATTTA+TGG | 0.204783 | 5.1:+43331320 | MS.gene070920:CDS |
| AAGATTTCGTTTAAGGAGTA+TGG | 0.258194 | 5.1:+43329261 | MS.gene070920:CDS |
| TGTGATTTGGGTAGCAAAAT+AGG | 0.266860 | 5.1:+43329142 | MS.gene070920:intron |
| GAGGAACAGAAGAAGGTTAT+TGG | 0.286993 | 5.1:+43329387 | MS.gene070920:CDS |
| TGATTAAGCTCTTCGTTATT+CGG | 0.289927 | 5.1:-43329327 | None:intergenic |
| TCAATTGCCACACGTTCTTC+TGG | 0.310258 | 5.1:-43331256 | None:intergenic |
| GCTTCTTACCCTGTGGTATC+AGG | 0.318511 | 5.1:-43331533 | None:intergenic |
| AAAGAAACCTTAAATTCTTT+GGG | 0.320146 | 5.1:-43331373 | None:intergenic |
| AAGAATGTTCAGGGATTTAT+GGG | 0.335669 | 5.1:+43331321 | MS.gene070920:CDS |
| TTAAATTCTTTGGGATCCTT+AGG | 0.363696 | 5.1:-43331364 | None:intergenic |
| TCTGCTTCAGGTTCAAGAAC+TGG | 0.380712 | 5.1:+43331189 | MS.gene070920:intron |
| GGAAGCGTAAAAGAATGTTC+AGG | 0.398097 | 5.1:+43331311 | MS.gene070920:CDS |
| GCGTTGGATAGTCTTGAAAA+AGG | 0.416950 | 5.1:+43329234 | MS.gene070920:CDS |
| TATTATTTACCTGCATTCTC+AGG | 0.420463 | 5.1:-43331077 | None:intergenic |
| GAACATTGCAGGAGGAGCTT+GGG | 0.444399 | 5.1:+43331463 | MS.gene070920:intron |
| TGAACATTGCAGGAGGAGCT+TGG | 0.451875 | 5.1:+43331462 | MS.gene070920:intron |
| GTTATTGGTGAGGTTGAAGC+AGG | 0.462602 | 5.1:+43329402 | MS.gene070920:CDS |
| TAAATACATCATTGTCCCCT+TGG | 0.489566 | 5.1:-43331558 | None:intergenic |
| CACAGGGTAAGAAGCGGCCA+AGG | 0.494504 | 5.1:+43331541 | MS.gene070920:CDS |
| CGAAGAGCTTAATCAGATGA+AGG | 0.516162 | 5.1:+43329335 | MS.gene070920:CDS |
| GTTACGTGGAGGTGTTACTT+TGG | 0.529557 | 5.1:+43331228 | MS.gene070920:CDS |
| GCAGCTTGAGGAACAGAAGA+AGG | 0.542878 | 5.1:+43329380 | MS.gene070920:CDS |
| AGAAGTTGACCTGAGAATGC+AGG | 0.568107 | 5.1:+43331068 | MS.gene070920:CDS |
| ACAGAAGAAGGTTATTGGTG+AGG | 0.575228 | 5.1:+43329392 | MS.gene070920:CDS |
| GGCAATTGAGAGTATGTTGT+CGG | 0.576322 | 5.1:+43331270 | MS.gene070920:CDS |
| GTGGAGGTGTTACTTTGGTG+AGG | 0.581557 | 5.1:+43331233 | MS.gene070920:CDS |
| CTAGAATATGATGAAGATGT+TGG | 0.582142 | 5.1:+43331486 | MS.gene070920:CDS |
| GAAGCGTAAAAGAATGTTCA+GGG | 0.583026 | 5.1:+43331312 | MS.gene070920:CDS |
| AGCGGCGATACAGAAAGCGT+TGG | 0.587447 | 5.1:+43329218 | MS.gene070920:CDS |
| ATGCAGTGACCTGATACCAC+AGG | 0.591833 | 5.1:+43331524 | MS.gene070920:CDS |
| CCTCACTGAGAACTCACCTA+AGG | 0.600047 | 5.1:+43331348 | MS.gene070920:CDS |
| AAAGTTTAATCTGAAGAAAG+CGG | 0.612912 | 5.1:+43329200 | MS.gene070920:CDS |
| ACAGGGTAAGAAGCGGCCAA+GGG | 0.615308 | 5.1:+43331542 | MS.gene070920:CDS |
| TAATTTGCAGAAGCAGCTTG+AGG | 0.618417 | 5.1:+43329368 | MS.gene070920:CDS |
| GCCGCTGAATACGCAAAATG+TGG | 0.625677 | 5.1:+43329164 | MS.gene070920:CDS |
| GTTGCAGTCAAATTTAACAA+TGG | 0.626519 | 5.1:+43331029 | MS.gene070920:CDS |
| CTTAGGTGAGTTCTCAGTGA+GGG | 0.632171 | 5.1:-43331347 | None:intergenic |
| CTTGGCCGCTTCTTACCCTG+TGG | 0.641684 | 5.1:-43331540 | None:intergenic |
| CAGGGTAAGAAGCGGCCAAG+GGG | 0.643585 | 5.1:+43331543 | MS.gene070920:CDS |
| CGTGTTGAACTTCGTCAACG+AGG | 0.649248 | 5.1:+43329009 | MS.gene070920:CDS |
| CGGAGAAAATAAGTCAGTGG+AGG | 0.655882 | 5.1:+43331290 | MS.gene070920:CDS |
| TGATACCACAGGGTAAGAAG+CGG | 0.675121 | 5.1:+43331535 | MS.gene070920:CDS |
| GCTGAATACGCAAAATGTGG+CGG | 0.678440 | 5.1:+43329167 | MS.gene070920:CDS |
| GGTGAGGCCAGAAGAACGTG+TGG | 0.679059 | 5.1:+43331249 | MS.gene070920:CDS |
| TGTCGGAGAAAATAAGTCAG+TGG | 0.683795 | 5.1:+43331287 | MS.gene070920:CDS |
| ATCAAGTTGAACAAGTTACG+TGG | 0.698323 | 5.1:+43331214 | MS.gene070920:CDS |
| TGCAGTGACCTGATACCACA+GGG | 0.698743 | 5.1:+43331525 | MS.gene070920:CDS |
| AAGTTGAACAAGTTACGTGG+AGG | 0.731034 | 5.1:+43331217 | MS.gene070920:CDS |
| CCTTAGGTGAGTTCTCAGTG+AGG | 0.748594 | 5.1:-43331348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATTAGTAGTAATAG+TGG | - | chr5.1:43331443-43331462 | None:intergenic | 15.0% |
| !! | ATTATATTAGTAGTAATAGT+GGG | - | chr5.1:43331442-43331461 | None:intergenic | 15.0% |
| !!! | AATTGTGTATATTTTAACAA+CGG | - | chr5.1:43330675-43330694 | None:intergenic | 15.0% |
| !! | AAAAGAAACCTTAAATTCTT+TGG | - | chr5.1:43331377-43331396 | None:intergenic | 20.0% |
| !! | AAAGAAACCTTAAATTCTTT+GGG | - | chr5.1:43331376-43331395 | None:intergenic | 20.0% |
| !! | AATGTTGTTCAATTAAGATA+TGG | + | chr5.1:43331150-43331169 | MS.gene070920:intron | 20.0% |
| !! | AATTTGAGTGATTTAAAAAG+AGG | + | chr5.1:43330349-43330368 | MS.gene070920:intron | 20.0% |
| !! | ATTTGATTAATGAAAAGAGA+TGG | + | chr5.1:43330605-43330624 | MS.gene070920:intron | 20.0% |
| !! | GAGTAGTTTAATAATTGTTA+TGG | + | chr5.1:43330417-43330436 | MS.gene070920:intron | 20.0% |
| !! | TCAGATAAAACAAAACAAAA+TGG | - | chr5.1:43330861-43330880 | None:intergenic | 20.0% |
| !! | TCATTAATCAAATATAGTAC+TGG | - | chr5.1:43330598-43330617 | None:intergenic | 20.0% |
| !! | TTTCAATCAAATCAAAAATC+TGG | - | chr5.1:43330569-43330588 | None:intergenic | 20.0% |
| !!! | AGATTAATTACAGTGTTTTA+AGG | - | chr5.1:43329929-43329948 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGTTTTTGTGATT+TGG | + | chr5.1:43329129-43329148 | MS.gene070920:intron | 20.0% |
| !!! | TCAATTAGTTTCTATTGATT+TGG | + | chr5.1:43329061-43329080 | MS.gene070920:intron | 20.0% |
| !!! | TCTTTTTAAATCACTCAAAT+TGG | - | chr5.1:43330350-43330369 | None:intergenic | 20.0% |
| !!! | TTATTTGAGTGTTTTGATTT+GGG | + | chr5.1:43329494-43329513 | MS.gene070920:intron | 20.0% |
| !!! | TTGTTTTGTTTTTGTGATTT+GGG | + | chr5.1:43329130-43329149 | MS.gene070920:intron | 20.0% |
| ! | AAAGTTTAATCTGAAGAAAG+CGG | + | chr5.1:43329200-43329219 | MS.gene070920:CDS | 25.0% |
| ! | AGTGATTTAAAAAGAGGTTT+GGG | + | chr5.1:43330355-43330374 | MS.gene070920:intron | 25.0% |
| ! | ATTAATGAAAAGAGATGGAA+CGG | + | chr5.1:43330610-43330629 | MS.gene070920:intron | 25.0% |
| ! | CTAATATAATTGAACATTGC+AGG | + | chr5.1:43331452-43331471 | MS.gene070920:intron | 25.0% |
| ! | TGGTATTTATACTGTGTTTA+TGG | + | chr5.1:43329081-43329100 | MS.gene070920:intron | 25.0% |
| ! | TTAAATCACTCAAATTGGAA+TGG | - | chr5.1:43330345-43330364 | None:intergenic | 25.0% |
| !! | AAAGTATCTCTCAAATTAGT+AGG | + | chr5.1:43330646-43330665 | MS.gene070920:intron | 25.0% |
| !! | AATTGATGAATGTAACTTGT+TGG | + | chr5.1:43330991-43331010 | MS.gene070920:intron | 25.0% |
| !!! | ATTTAAGGTTTCTTTTTGTC+CGG | + | chr5.1:43331381-43331400 | MS.gene070920:intron | 25.0% |
| !!! | GTGTTTTAAAACCTAAATGA+TGG | + | chr5.1:43330264-43330283 | MS.gene070920:intron | 25.0% |
| !!! | GTTATTTGAGTGTTTTGATT+TGG | + | chr5.1:43329493-43329512 | MS.gene070920:intron | 25.0% |
| !!! | GTTTTAAAACGTAAATGAAC+AGG | + | chr5.1:43329712-43329731 | MS.gene070920:intron | 25.0% |
| !!! | TCCTGTACATTTAGTTTTTA+AGG | - | chr5.1:43329574-43329593 | None:intergenic | 25.0% |
| !!! | TTTAAAAGAGGTTTAAGTTG+TGG | + | chr5.1:43329828-43329847 | MS.gene070920:intron | 25.0% |
| !!! | TTTGTTTTTCTCAATTTGAG+CGG | + | chr5.1:43329804-43329823 | MS.gene070920:intron | 25.0% |
| !!! | TTTTGATTTGGGTTTGTTTA+GGG | + | chr5.1:43329505-43329524 | MS.gene070920:intron | 25.0% |
| AAACACTCAAATAACTGAAC+CGG | - | chr5.1:43330065-43330084 | None:intergenic | 30.0% | |
| AAAGAATGTTCAGGGATTTA+TGG | + | chr5.1:43331320-43331339 | MS.gene070920:CDS | 30.0% | |
| AAAGTAATTCAATCATGACC+TGG | + | chr5.1:43329671-43329690 | MS.gene070920:intron | 30.0% | |
| AACCAAACTATAGATAGTAC+TGG | - | chr5.1:43329763-43329782 | None:intergenic | 30.0% | |
| AACCAGTACTATCTATAGTT+TGG | + | chr5.1:43329758-43329777 | MS.gene070920:intron | 30.0% | |
| AAGAATGTTCAGGGATTTAT+GGG | + | chr5.1:43331321-43331340 | MS.gene070920:CDS | 30.0% | |
| AAGATTTCGTTTAAGGAGTA+TGG | + | chr5.1:43329261-43329280 | MS.gene070920:CDS | 30.0% | |
| ATATAATTGAACATTGCAGG+AGG | + | chr5.1:43331455-43331474 | MS.gene070920:intron | 30.0% | |
| ATCAAATCCTCTCAAATTTG+AGG | - | chr5.1:43330804-43330823 | None:intergenic | 30.0% | |
| ATTCCAAGAAACAATCTAGT+AGG | + | chr5.1:43330904-43330923 | MS.gene070920:intron | 30.0% | |
| ATTCCAGTTATTGTTGAAAC+TGG | + | chr5.1:43330940-43330959 | MS.gene070920:intron | 30.0% | |
| ATTGTCTTAATCCCTCAAAT+TGG | - | chr5.1:43330007-43330026 | None:intergenic | 30.0% | |
| CATCTATAAAATTCTGCTTC+AGG | + | chr5.1:43331177-43331196 | MS.gene070920:intron | 30.0% | |
| CTAGAATATGATGAAGATGT+TGG | + | chr5.1:43331486-43331505 | MS.gene070920:CDS | 30.0% | |
| CTATAGTTTGGTTATTTGAG+TGG | + | chr5.1:43329770-43329789 | MS.gene070920:intron | 30.0% | |
| GAGAATGCAGGTAAATAATA+TGG | + | chr5.1:43331080-43331099 | MS.gene070920:intron | 30.0% | |
| GAGTGATTTAAAAAGAGGTT+TGG | + | chr5.1:43330354-43330373 | MS.gene070920:intron | 30.0% | |
| GCCTTAAAAACTAAATGTAC+AGG | + | chr5.1:43329570-43329589 | MS.gene070920:intron | 30.0% | |
| GTTGCAGTCAAATTTAACAA+TGG | + | chr5.1:43331029-43331048 | MS.gene070920:CDS | 30.0% | |
| TAAGGATCCCAAAGAATTTA+AGG | + | chr5.1:43331366-43331385 | MS.gene070920:CDS | 30.0% | |
| TATTATTTACCTGCATTCTC+AGG | - | chr5.1:43331080-43331099 | None:intergenic | 30.0% | |
| TCAAATCCTCTCAAATTTGA+GGG | - | chr5.1:43330803-43330822 | None:intergenic | 30.0% | |
| TCCCTTTCAACAATGTAAAA+AGG | - | chr5.1:43331117-43331136 | None:intergenic | 30.0% | |
| TGATTAAGCTCTTCGTTATT+CGG | - | chr5.1:43329330-43329349 | None:intergenic | 30.0% | |
| TTAATTGATTGAACTCGATG+CGG | + | chr5.1:43329466-43329485 | MS.gene070920:intron | 30.0% | |
| TTATTTGAGTAGCTTAACTG+TGG | + | chr5.1:43330179-43330198 | MS.gene070920:intron | 30.0% | |
| TTGAAAGGGAATTAGTGATT+TGG | + | chr5.1:43331127-43331146 | MS.gene070920:intron | 30.0% | |
| TTGTCTTAATCCCTCAAATT+GGG | - | chr5.1:43330006-43330025 | None:intergenic | 30.0% | |
| ! | AAAACAACTATGATAGTGAC+CGG | - | chr5.1:43331403-43331422 | None:intergenic | 30.0% |
| ! | CAGGTATGGTTAAAATGTTT+TGG | + | chr5.1:43329421-43329440 | MS.gene070920:intron | 30.0% |
| ! | GCCTTTTTACATTGTTGAAA+GGG | + | chr5.1:43331113-43331132 | MS.gene070920:intron | 30.0% |
| ! | TCTTTAAAAACCGCTCAAAT+CGG | - | chr5.1:43329861-43329880 | None:intergenic | 30.0% |
| ! | TGCCTTTTTACATTGTTGAA+AGG | + | chr5.1:43331112-43331131 | MS.gene070920:intron | 30.0% |
| !! | TTAAATTCTTTGGGATCCTT+AGG | - | chr5.1:43331367-43331386 | None:intergenic | 30.0% |
| !!! | AATTTGAGCGGTTTTAAAAG+AGG | + | chr5.1:43329816-43329835 | MS.gene070920:intron | 30.0% |
| !!! | AGTTATTTGAGTGTTTTGAC+TGG | + | chr5.1:43330069-43330088 | MS.gene070920:intron | 30.0% |
| !!! | GTTATTTGAGTGTTTTGACT+GGG | + | chr5.1:43330070-43330089 | MS.gene070920:intron | 30.0% |
| !!! | GTTTTGATTTGGGTTTGTTT+AGG | + | chr5.1:43329504-43329523 | MS.gene070920:intron | 30.0% |
| !!! | TTATTTGAGTGTTTTGACTG+GGG | + | chr5.1:43330071-43330090 | MS.gene070920:intron | 30.0% |
| !!! | TTATTTTAGCGTTTTGATCG+CGG | + | chr5.1:43329625-43329644 | MS.gene070920:intron | 30.0% |
| AAAGATGGAACGGAATACAA+TGG | + | chr5.1:43330767-43330786 | MS.gene070920:intron | 35.0% | |
| AAAGCAGTTGAATCATGAAC+TGG | + | chr5.1:43330117-43330136 | MS.gene070920:intron | 35.0% | |
| AACACTCAAATAACTGAACC+GGG | - | chr5.1:43330064-43330083 | None:intergenic | 35.0% | |
| AACTGGTACTATCTACAGTT+TGG | + | chr5.1:43330156-43330175 | MS.gene070920:intron | 35.0% | |
| AAGTAACCCTCAAATTTGAG+AGG | + | chr5.1:43330794-43330813 | MS.gene070920:intron | 35.0% | |
| AGTGTTTGAAAGACTGAACT+GGG | - | chr5.1:43330515-43330534 | None:intergenic | 35.0% | |
| CATTGCTGAAAAAGATGGAA+CGG | + | chr5.1:43330757-43330776 | MS.gene070920:intron | 35.0% | |
| GAAGCGTAAAAGAATGTTCA+GGG | + | chr5.1:43331312-43331331 | MS.gene070920:CDS | 35.0% | |
| GATGATTCAACTGATTGAAC+TGG | + | chr5.1:43329592-43329611 | MS.gene070920:intron | 35.0% | |
| GTGATTTCATCCCAATTTGA+GGG | + | chr5.1:43329993-43330012 | MS.gene070920:intron | 35.0% | |
| TCAGCAATGGAAGATATCAA+TGG | - | chr5.1:43330746-43330765 | None:intergenic | 35.0% | |
| TCTTCCATTGCTGAAAAAGA+TGG | + | chr5.1:43330752-43330771 | MS.gene070920:intron | 35.0% | |
| TGTGATTTCATCCCAATTTG+AGG | + | chr5.1:43329992-43330011 | MS.gene070920:intron | 35.0% | |
| ! | CTTTAAAAACCGCTCAAATC+GGG | - | chr5.1:43329860-43329879 | None:intergenic | 35.0% |
| ! | TAAATGATGGAACTGTGAAC+CGG | + | chr5.1:43330277-43330296 | MS.gene070920:intron | 35.0% |
| ! | TGCTTTAAACCGCTCAAATT+GGG | - | chr5.1:43330211-43330230 | None:intergenic | 35.0% |
| ! | TGGATAGTCTTGAAAAAGGA+GGG | + | chr5.1:43329238-43329257 | MS.gene070920:CDS | 35.0% |
| ! | TGTCCTACTAGATTGTTTCT+TGG | - | chr5.1:43330910-43330929 | None:intergenic | 35.0% |
| ! | TGTGATTTGGGTAGCAAAAT+AGG | + | chr5.1:43329142-43329161 | MS.gene070920:intron | 35.0% |
| ! | TTGGATAGTCTTGAAAAAGG+AGG | + | chr5.1:43329237-43329256 | MS.gene070920:CDS | 35.0% |
| !! | ATCAAGTTGAACAAGTTACG+TGG | + | chr5.1:43331214-43331233 | MS.gene070920:CDS | 35.0% |
| !! | ATGGTTCTATTTGAGCGTTT+TGG | + | chr5.1:43330436-43330455 | MS.gene070920:intron | 35.0% |
| !! | GATTTGAGCGGTTTTTAAAG+AGG | + | chr5.1:43329860-43329879 | MS.gene070920:intron | 35.0% |
| !! | TTTTGACTGGGGTTTGTTTA+GGG | + | chr5.1:43330082-43330101 | MS.gene070920:intron | 35.0% |
| !!! | CTATTTGAGCGTTTTGGTTA+TGG | + | chr5.1:43330442-43330461 | MS.gene070920:intron | 35.0% |
| !!! | TAGGTTTTAAAACACCGAAC+TGG | - | chr5.1:43330259-43330278 | None:intergenic | 35.0% |
| AAAGCAGTTGAATCTTGACC+TGG | + | chr5.1:43329540-43329559 | MS.gene070920:intron | 40.0% | |
| AACAAACCGACAAAACCTCT+TGG | - | chr5.1:43330040-43330059 | None:intergenic | 40.0% | |
| AACCAAAGTGAAGATAGCAC+CGG | - | chr5.1:43330299-43330318 | None:intergenic | 40.0% | |
| AAGTTGAACAAGTTACGTGG+AGG | + | chr5.1:43331217-43331236 | MS.gene070920:CDS | 40.0% | |
| ACAATTGAACCATCTCCAAG+AGG | + | chr5.1:43330022-43330041 | MS.gene070920:intron | 40.0% | |
| ACAGAAGAAGGTTATTGGTG+AGG | + | chr5.1:43329392-43329411 | MS.gene070920:CDS | 40.0% | |
| AGGAGGGAAGATTTCGTTTA+AGG | + | chr5.1:43329254-43329273 | MS.gene070920:CDS | 40.0% | |
| AGTTATTGTTGAAACTGGCG+AGG | + | chr5.1:43330945-43330964 | MS.gene070920:intron | 40.0% | |
| ATCGAACTAACAAAACCTCC+AGG | - | chr5.1:43330491-43330510 | None:intergenic | 40.0% | |
| ATCGAACTAGCAAATCATCC+AGG | - | chr5.1:43329692-43329711 | None:intergenic | 40.0% | |
| CAGTGTTTGAAAGACTGAAC+TGG | - | chr5.1:43330516-43330535 | None:intergenic | 40.0% | |
| CGAAGAGCTTAATCAGATGA+AGG | + | chr5.1:43329335-43329354 | MS.gene070920:CDS | 40.0% | |
| GACTCAACCATACATCAAAC+CGG | - | chr5.1:43329907-43329926 | None:intergenic | 40.0% | |
| GAGGAACAGAAGAAGGTTAT+TGG | + | chr5.1:43329387-43329406 | MS.gene070920:CDS | 40.0% | |
| GGTTCACAGTTCCATCATTT+AGG | - | chr5.1:43330278-43330297 | None:intergenic | 40.0% | |
| GTTATTGTTGAAACTGGCGA+GGG | + | chr5.1:43330946-43330965 | MS.gene070920:intron | 40.0% | |
| TAATTGTGACCTAGACGTTC+CGG | + | chr5.1:43329885-43329904 | MS.gene070920:intron | 40.0% | |
| TCCAGGTATCCACTCAAATT+GGG | - | chr5.1:43330474-43330493 | None:intergenic | 40.0% | |
| TCGCCAGTTTCAACAATAAC+TGG | - | chr5.1:43330946-43330965 | None:intergenic | 40.0% | |
| TGGTTTCATCCCAATTTGAG+TGG | + | chr5.1:43330462-43330481 | MS.gene070920:intron | 40.0% | |
| TGTCGGAGAAAATAAGTCAG+TGG | + | chr5.1:43331287-43331306 | MS.gene070920:CDS | 40.0% | |
| TTAAACCGCTCAAATTGGGA+TGG | - | chr5.1:43330207-43330226 | None:intergenic | 40.0% | |
| ! | AGAGGTTTGGGTTTGATGTA+TGG | + | chr5.1:43330367-43330386 | MS.gene070920:intron | 40.0% |
| ! | CTGCTTTAAACCGCTCAAAT+TGG | - | chr5.1:43330212-43330231 | None:intergenic | 40.0% |
| ! | GCGTTGGATAGTCTTGAAAA+AGG | + | chr5.1:43329234-43329253 | MS.gene070920:CDS | 40.0% |
| ! | GGAAGCGTAAAAGAATGTTC+AGG | + | chr5.1:43331311-43331330 | MS.gene070920:CDS | 40.0% |
| ! | GGCAATTGAGAGTATGTTGT+CGG | + | chr5.1:43331270-43331289 | MS.gene070920:CDS | 40.0% |
| ! | TAATTTGCAGAAGCAGCTTG+AGG | + | chr5.1:43329368-43329387 | MS.gene070920:CDS | 40.0% |
| !! | TTTTGATCGCGGTTTGTTTC+TGG | + | chr5.1:43329636-43329655 | MS.gene070920:intron | 40.0% |
| !!! | CGTTCCATCTTTTTCAGCAA+TGG | - | chr5.1:43330759-43330778 | None:intergenic | 40.0% |
| !!! | GTTTTGACTGGGGTTTGTTT+AGG | + | chr5.1:43330081-43330100 | MS.gene070920:intron | 40.0% |
| !!! | GTTTTTAAGGCGAATCATCC+AGG | - | chr5.1:43329561-43329580 | None:intergenic | 40.0% |
| ACCTGAATGATTCGCCAGTT+CGG | + | chr5.1:43330242-43330261 | MS.gene070920:intron | 45.0% | |
| AGAAGTTGACCTGAGAATGC+AGG | + | chr5.1:43331068-43331087 | MS.gene070920:CDS | 45.0% | |
| CAATTTGAGTGGATACCTGG+AGG | + | chr5.1:43330473-43330492 | MS.gene070920:intron | 45.0% | |
| CGGAGAAAATAAGTCAGTGG+AGG | + | chr5.1:43331290-43331309 | MS.gene070920:CDS | 45.0% | |
| CTCCAGGTATCCACTCAAAT+TGG | - | chr5.1:43330475-43330494 | None:intergenic | 45.0% | |
| CTTAGGTGAGTTCTCAGTGA+GGG | - | chr5.1:43331350-43331369 | None:intergenic | 45.0% | |
| GCTGAATACGCAAAATGTGG+CGG | + | chr5.1:43329167-43329186 | MS.gene070920:CDS | 45.0% | |
| GTTATTGGTGAGGTTGAAGC+AGG | + | chr5.1:43329402-43329421 | MS.gene070920:CDS | 45.0% | |
| TACATCAAACCGGAACGTCT+AGG | - | chr5.1:43329897-43329916 | None:intergenic | 45.0% | |
| TCAATTGCCACACGTTCTTC+TGG | - | chr5.1:43331259-43331278 | None:intergenic | 45.0% | |
| TCCCAATTTGAGTGGATACC+TGG | + | chr5.1:43330470-43330489 | MS.gene070920:intron | 45.0% | |
| TGATACCACAGGGTAAGAAG+CGG | + | chr5.1:43331535-43331554 | MS.gene070920:CDS | 45.0% | |
| TGATTGAACTCGATGCGGTT+TGG | + | chr5.1:43329471-43329490 | MS.gene070920:intron | 45.0% | |
| TGGTTCCATCCCAATTTGAG+CGG | + | chr5.1:43330199-43330218 | MS.gene070920:intron | 45.0% | |
| ! | AGACGTTCCGGTTTGATGTA+TGG | + | chr5.1:43329897-43329916 | MS.gene070920:intron | 45.0% |
| ! | GCCACATTTTGCGTATTCAG+CGG | - | chr5.1:43329168-43329187 | None:intergenic | 45.0% |
| ! | GGGTTTGTTTAGGGTTTGAG+AGG | + | chr5.1:43329514-43329533 | MS.gene070920:intron | 45.0% |
| ! | TCTGCTTCAGGTTCAAGAAC+TGG | + | chr5.1:43331189-43331208 | MS.gene070920:intron | 45.0% |
| ! | TGGATTTGTCCCGATTTGAG+CGG | + | chr5.1:43329848-43329867 | MS.gene070920:intron | 45.0% |
| !! | AACCGGTGCTATCTTCACTT+TGG | + | chr5.1:43330294-43330313 | MS.gene070920:intron | 45.0% |
| !! | CCATCTCCAAGAGGTTTTGT+CGG | + | chr5.1:43330031-43330050 | MS.gene070920:intron | 45.0% |
| !! | CGGTTTGTTTCTGGTTTGAG+GGG | + | chr5.1:43329645-43329664 | MS.gene070920:intron | 45.0% |
| !! | GCGGTTTGTTTCTGGTTTGA+GGG | + | chr5.1:43329644-43329663 | MS.gene070920:intron | 45.0% |
| !! | GTTACGTGGAGGTGTTACTT+TGG | + | chr5.1:43331228-43331247 | MS.gene070920:CDS | 45.0% |
| ACCGAACTGGCGAATCATTC+AGG | - | chr5.1:43330246-43330265 | None:intergenic | 50.0% | |
| ATGCAGTGACCTGATACCAC+AGG | + | chr5.1:43331524-43331543 | MS.gene070920:CDS | 50.0% | |
| CCGACAAAACCTCTTGGAGA+TGG | - | chr5.1:43330034-43330053 | None:intergenic | 50.0% | |
| CCTCACTGAGAACTCACCTA+AGG | + | chr5.1:43331348-43331367 | MS.gene070920:CDS | 50.0% | |
| CCTTAGGTGAGTTCTCAGTG+AGG | - | chr5.1:43331351-43331370 | None:intergenic | 50.0% | |
| CGTGTTGAACTTCGTCAACG+AGG | + | chr5.1:43329009-43329028 | MS.gene070920:CDS | 50.0% | |
| GAACATTGCAGGAGGAGCTT+GGG | + | chr5.1:43331463-43331482 | MS.gene070920:intron | 50.0% | |
| GCAGCTTGAGGAACAGAAGA+AGG | + | chr5.1:43329380-43329399 | MS.gene070920:CDS | 50.0% | |
| GCCGCTGAATACGCAAAATG+TGG | + | chr5.1:43329164-43329183 | MS.gene070920:CDS | 50.0% | |
| GCTTCTTACCCTGTGGTATC+AGG | - | chr5.1:43331536-43331555 | None:intergenic | 50.0% | |
| TGAACATTGCAGGAGGAGCT+TGG | + | chr5.1:43331462-43331481 | MS.gene070920:intron | 50.0% | |
| TGCAGTGACCTGATACCACA+GGG | + | chr5.1:43331525-43331544 | MS.gene070920:CDS | 50.0% | |
| TGGTGAGGTTGAAGCAGGTA+TGG | + | chr5.1:43329407-43329426 | MS.gene070920:intron | 50.0% | |
| ! | GGGGTTTGTTTAGGGTTCGA+GGG | + | chr5.1:43330090-43330109 | MS.gene070920:intron | 50.0% |
| ! | GGGTTTGTTTAGGGTTCGAG+GGG | + | chr5.1:43330091-43330110 | MS.gene070920:intron | 50.0% |
| ! | TGGGGTTTGTTTAGGGTTCG+AGG | + | chr5.1:43330089-43330108 | MS.gene070920:intron | 50.0% |
| !! | CGCGGTTTGTTTCTGGTTTG+AGG | + | chr5.1:43329643-43329662 | MS.gene070920:intron | 50.0% |
| !! | GTGGAGGTGTTACTTTGGTG+AGG | + | chr5.1:43331233-43331252 | MS.gene070920:CDS | 50.0% |
| !!! | GGTTTTGTCGGTTTGTTGCC+CGG | + | chr5.1:43330043-43330062 | MS.gene070920:intron | 50.0% |
| ACAGGGTAAGAAGCGGCCAA+GGG | + | chr5.1:43331542-43331561 | MS.gene070920:CDS | 55.0% | |
| TGTTGAAACTGGCGAGGGCT+TGG | + | chr5.1:43330951-43330970 | MS.gene070920:intron | 55.0% | |
| ! | AGCGGCGATACAGAAAGCGT+TGG | + | chr5.1:43329218-43329237 | MS.gene070920:CDS | 55.0% |
| CACAGGGTAAGAAGCGGCCA+AGG | + | chr5.1:43331541-43331560 | MS.gene070920:CDS | 60.0% | |
| CAGGGTAAGAAGCGGCCAAG+GGG | + | chr5.1:43331543-43331562 | MS.gene070920:CDS | 60.0% | |
| CTTGGCCGCTTCTTACCCTG+TGG | - | chr5.1:43331543-43331562 | None:intergenic | 60.0% | |
| GGTGAGGCCAGAAGAACGTG+TGG | + | chr5.1:43331249-43331268 | MS.gene070920:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 43329005 | 43331572 | 43329005 | ID=MS.gene070920 |
| chr5.1 | mRNA | 43329005 | 43331572 | 43329005 | ID=MS.gene070920.t1;Parent=MS.gene070920 |
| chr5.1 | exon | 43329005 | 43329030 | 43329005 | ID=MS.gene070920.t1.exon1;Parent=MS.gene070920.t1 |
| chr5.1 | CDS | 43329005 | 43329030 | 43329005 | ID=cds.MS.gene070920.t1;Parent=MS.gene070920.t1 |
| chr5.1 | exon | 43329156 | 43329423 | 43329156 | ID=MS.gene070920.t1.exon2;Parent=MS.gene070920.t1 |
| chr5.1 | CDS | 43329156 | 43329423 | 43329156 | ID=cds.MS.gene070920.t1;Parent=MS.gene070920.t1 |
| chr5.1 | exon | 43331019 | 43331089 | 43331019 | ID=MS.gene070920.t1.exon3;Parent=MS.gene070920.t1 |
| chr5.1 | CDS | 43331019 | 43331089 | 43331019 | ID=cds.MS.gene070920.t1;Parent=MS.gene070920.t1 |
| chr5.1 | exon | 43331199 | 43331387 | 43331199 | ID=MS.gene070920.t1.exon4;Parent=MS.gene070920.t1 |
| chr5.1 | CDS | 43331199 | 43331387 | 43331199 | ID=cds.MS.gene070920.t1;Parent=MS.gene070920.t1 |
| chr5.1 | exon | 43331474 | 43331572 | 43331474 | ID=MS.gene070920.t1.exon5;Parent=MS.gene070920.t1 |
| chr5.1 | CDS | 43331474 | 43331572 | 43331474 | ID=cds.MS.gene070920.t1;Parent=MS.gene070920.t1 |
| Gene Sequence |
| Protein sequence |
