AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052860.t1 MTR_1g035700 92.035 113 9 0 1 113 1 113 1.16e-71 215
MS.gene052860.t1 MTR_1g035700 92.035 113 9 0 1 113 1 113 1.21e-71 215
MS.gene052860.t1 MTR_1g035700 92.035 113 9 0 1 113 1 113 8.00e-71 214
MS.gene052860.t1 MTR_4g074120 58.407 113 43 2 1 111 1 111 3.29e-35 121
MS.gene052860.t1 MTR_4g074120 58.407 113 43 2 1 111 1 111 6.32e-35 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATTCATCTTTGAAT+TGG + 11074:6681-6700 MS.gene052860:CDS 20.0%
!!! TCAAATACTGATTTTCATTA+TGG + 11074:6656-6675 MS.gene052860:CDS 20.0%
!! TGTTGATGAACAGTATAAAT+TGG + 11074:6943-6962 MS.gene052860:CDS 25.0%
!! TTCCAATGGGAAATTATTTT+GGG + 11074:6756-6775 MS.gene052860:CDS 25.0%
AACCCAAAATAATTTCCCAT+TGG - 11074:6761-6780 MS.gene052860:intergenic 30.0%
CATGCAATATCATTTGAATC+TGG + 11074:6704-6723 MS.gene052860:CDS 30.0%
GGTTGAATAATGATACTTCT+GGG + 11074:6777-6796 MS.gene052860:CDS 30.0%
TGATGAACAGTATAAATTGG+AGG + 11074:6946-6965 MS.gene052860:CDS 30.0%
! GTTCCAATGGGAAATTATTT+TGG + 11074:6755-6774 MS.gene052860:CDS 30.0%
AACAGTATAAATTGGAGGAG+GGG + 11074:6951-6970 MS.gene052860:CDS 35.0%
GAACAGTATAAATTGGAGGA+GGG + 11074:6950-6969 MS.gene052860:CDS 35.0%
GCAATATCATTTGAATCTGG+TGG + 11074:6707-6726 MS.gene052860:CDS 35.0%
GGGTTGAATAATGATACTTC+TGG + 11074:6776-6795 MS.gene052860:CDS 35.0%
TGAACAGTATAAATTGGAGG+AGG + 11074:6949-6968 MS.gene052860:CDS 35.0%
! GGAATTCAAGCGTTGTTAAT+AGG + 11074:6816-6835 MS.gene052860:CDS 35.0%
!! TTCTGGGATGATGATGTATT+CGG + 11074:6793-6812 MS.gene052860:CDS 35.0%
ATTGAAGCATGATGCAGGTT+TGG + 11074:6907-6926 MS.gene052860:CDS 40.0%
GTTCGTCTGTTATGAGTCAA+CGG + 11074:6840-6859 MS.gene052860:CDS 40.0%
TTCGTCTGTTATGAGTCAAC+GGG + 11074:6841-6860 MS.gene052860:CDS 40.0%
! TCTGGGATGATGATGTATTC+GGG + 11074:6794-6813 MS.gene052860:CDS 40.0%
!! CTTCTTGTTGATTCTGTTCC+TGG + 11074:6884-6903 MS.gene052860:CDS 40.0%
AGTCAACGGGAATATGTGTC+TGG + 11074:6854-6873 MS.gene052860:CDS 45.0%
TTGCCTGAGATGGTTCCAAT+GGG + 11074:6743-6762 MS.gene052860:CDS 45.0%
TTTCCCATTGGAACCATCTC+AGG - 11074:6749-6768 MS.gene052860:intergenic 45.0%
! CTGGGATGATGATGTATTCG+GGG + 11074:6795-6814 MS.gene052860:CDS 45.0%
! TGTTAGTAGCTTGCCTGAGA+TGG + 11074:6733-6752 MS.gene052860:CDS 45.0%
CCTGCATCATGCTTCAATCC+AGG - 11074:6905-6924 MS.gene052860:intergenic 50.0%
CCTGGATTGAAGCATGATGC+AGG + 11074:6902-6921 MS.gene052860:CDS 50.0%
CTTGCCTGAGATGGTTCCAA+TGG + 11074:6742-6761 MS.gene052860:CDS 50.0%
ATGCAGGTTTGGCTGCTGAG+TGG + 11074:6918-6937 MS.gene052860:CDS 55.0%


Chromosome Type Strat End Strand Name
11074 gene 6644 6985 6644 ID=MS.gene052860
11074 mRNA 6644 6985 6644 ID=MS.gene052860.t1;Parent=MS.gene052860
11074 exon 6644 6985 6644 ID=MS.gene052860.t1.exon1;Parent=MS.gene052860.t1
11074 CDS 6644 6985 6644 ID=cds.MS.gene052860.t1;Parent=MS.gene052860.t1
Gene Sequence

>MS.gene052860

ATGGCAGCAGAGTCAAATACTGATTTTCATTATGGTGATATGAATTCATCTTTGAATTGGCATGCAATATCATTTGAATCTGGTGGTGTTGTTAGTAGCTTGCCTGAGATGGTTCCAATGGGAAATTATTTTGGGTTGAATAATGATACTTCTGGGATGATGATGTATTCGGGGAATTCAAGCGTTGTTAATAGGAGTTCGTCTGTTATGAGTCAACGGGAATATGTGTCTGGCTGTTCTCTTCTTGTTGATTCTGTTCCTGGATTGAAGCATGATGCAGGTTTGGCTGCTGAGTGGTCTGTTGATGAACAGTATAAATTGGAGGAGGGGCTTCTCAAGTAA

Protein sequence

>MS.gene052860.t1

MAAESNTDFHYGDMNSSLNWHAISFESGGVVSSLPEMVPMGNYFGLNNDTSGMMMYSGNSSVVNRSSSVMSQREYVSGCSLLVDSVPGLKHDAGLAAEWSVDEQYKLEEGLLK