AlfalfaGEDB | MS.gene071069

M. sativa cultivar XinJiangDaYe / MS.gene071069

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071069.t1	XP_024631467.1	97	169	5	0	13	181	129	297	2.30E-84	321.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071069.t1	Q9FNN6	60.6	175	58	3	13	179	125	296	1.7e-40	167.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071069.t1	A0A396JPI4	97.0	169	5	0	13	181	129	297	1.7e-84	321.6

TFs/TRs:

Gene ID	Type	Classification
MS.gene071069.t1	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene061013	MS.gene071069	0.990397	1.94E-182	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071069.t1	MTR_1g033620	95.429	175	8	0	7	181	6	180	2.26e-119	337
MS.gene071069.t1	MTR_8g063600	62.644	174	53	4	13	175	113	285	3.89e-63	196
MS.gene071069.t1	MTR_4g111975	67.407	135	36	4	13	140	145	278	1.36e-49	162
MS.gene071069.t1	MTR_8g063870	45.455	187	73	4	5	173	91	266	1.51e-41	140
MS.gene071069.t1	MTR_1g111830	73.913	69	18	0	13	81	131	199	5.00e-30	110
MS.gene071069.t1	MTR_3g462790	78.788	66	14	0	14	79	155	220	1.02e-29	111
MS.gene071069.t1	MTR_5g069710	80.645	62	12	0	13	74	139	200	4.53e-29	109
MS.gene071069.t1	MTR_7g067080	76.471	68	16	0	14	81	148	215	1.30e-28	108
MS.gene071069.t1	MTR_4g015130	72.881	59	16	0	16	74	3	61	8.14e-26	95.1
MS.gene071069.t1	MTR_5g081860	69.014	71	20	1	13	81	132	202	8.26e-26	100
MS.gene071069.t1	MTR_6g092540	57.955	88	30	2	14	101	105	185	9.29e-25	97.8
MS.gene071069.t1	MTR_4g100630	61.194	67	26	0	13	79	102	168	2.34e-23	94.7
MS.gene071069.t1	MTR_8g101650	70.175	57	16	1	14	70	113	168	1.22e-22	92.0
MS.gene071069.t1	MTR_2g100930	51.020	98	40	1	13	102	116	213	2.24e-22	92.4
MS.gene071069.t1	MTR_5g027570	55.714	70	29	1	13	80	99	168	1.53e-20	85.5
MS.gene071069.t1	MTR_0036s0260	63.333	60	22	0	13	72	35	94	2.32e-20	84.3
MS.gene071069.t1	MTR_5g088010	58.209	67	24	2	14	77	68	133	2.46e-20	85.1
MS.gene071069.t1	MTR_5g088060	58.209	67	24	2	14	77	280	345	2.19e-19	84.7
MS.gene071069.t1	MTR_5g488160	58.209	67	24	2	14	77	280	345	2.19e-19	84.7
MS.gene071069.t1	MTR_5g037080	71.667	60	17	0	13	72	109	168	1.67e-18	81.3
MS.gene071069.t1	MTR_2g090305	61.667	60	23	0	13	72	35	94	1.97e-18	79.0
MS.gene071069.t1	MTR_4g107230	82.051	39	7	0	14	52	92	130	7.05e-16	73.9
MS.gene071069.t1	MTR_3g104370	57.627	59	22	2	15	70	100	158	8.48e-16	72.8
MS.gene071069.t1	MTR_5g027550	52.113	71	31	1	13	80	84	154	1.83e-15	72.0
MS.gene071069.t1	MTR_1g048660	46.875	64	34	0	14	77	20	83	6.07e-14	64.7
MS.gene071069.t1	MTR_1g083180	50.746	67	29	2	13	76	68	133	3.76e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071069.t1	AT5G08520	67.614	176	34	4	13	174	125	291	6.34e-69	211
MS.gene071069.t1	AT1G49010	56.618	136	54	2	13	143	141	276	1.87e-40	139
MS.gene071069.t1	AT5G23650	39.024	205	79	3	13	171	127	331	7.36e-34	122
MS.gene071069.t1	AT5G04760	77.419	62	14	0	13	74	106	167	1.52e-29	108
MS.gene071069.t1	AT5G58900	80.328	61	12	0	14	74	149	209	2.99e-29	109
MS.gene071069.t1	AT2G38090	78.689	61	13	0	14	74	149	209	1.14e-27	105
MS.gene071069.t1	AT5G01200	74.576	59	15	0	16	74	156	214	2.33e-25	99.0
MS.gene071069.t1	AT5G05790	69.014	71	20	1	13	81	138	208	1.41e-24	97.1
MS.gene071069.t1	AT5G05790	69.014	71	20	1	13	81	138	208	1.41e-24	97.1
MS.gene071069.t1	AT3G11280	74.194	62	16	0	13	74	134	195	5.94e-24	95.1
MS.gene071069.t1	AT3G11280	74.194	62	16	0	13	74	134	195	5.94e-24	95.1
MS.gene071069.t1	AT5G61620	57.647	85	26	2	13	87	115	199	2.58e-23	94.4
MS.gene071069.t1	AT5G47390	63.636	66	24	0	13	78	103	168	2.68e-23	95.1
MS.gene071069.t1	AT5G56840	53.659	82	37	1	13	93	98	179	1.67e-22	90.5
MS.gene071069.t1	AT3G10580	59.420	69	26	1	13	81	102	168	6.71e-20	84.3
MS.gene071069.t1	AT3G10580	59.420	69	26	1	13	81	102	168	1.19e-19	84.0
MS.gene071069.t1	AT1G70000	75.862	58	14	0	14	71	106	163	1.88e-18	80.5
MS.gene071069.t1	AT1G70000	75.862	58	14	0	14	71	106	163	1.88e-18	80.5
MS.gene071069.t1	AT4G09450	61.017	59	23	0	13	71	98	156	4.05e-18	78.6
MS.gene071069.t1	AT3G16350	80.488	41	8	0	13	53	144	184	8.49e-17	77.4
MS.gene071069.t1	AT1G19000	51.485	101	43	2	14	109	110	209	1.65e-16	75.5
MS.gene071069.t1	AT1G19000	51.485	101	43	2	14	109	110	209	1.65e-16	75.5
MS.gene071069.t1	AT1G74840	77.500	40	9	0	13	52	103	142	3.37e-15	71.2
MS.gene071069.t1	AT1G74840	77.500	40	9	0	13	52	103	142	4.61e-15	71.2
MS.gene071069.t1	AT3G10590	58.621	58	23	1	14	71	119	175	1.71e-12	63.5

Find 0 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCTCATATTTTGCTTCAAAT+TGG	+	11124:13544-13563	MS.gene071069:CDS	25.0%
!!	TTCAACAGGTTATTTCTTCT+GGG	+	11124:13567-13586	MS.gene071069:CDS	30.0%
	GACATTACAAGCGTTAACAA+CGG	+	11124:13738-13757	MS.gene071069:CDS	35.0%
!	TTGCTTCAAATTGGTTCAAC+AGG	+	11124:13553-13572	MS.gene071069:CDS	35.0%
!!	GTTCAACAGGTTATTTCTTC+TGG	+	11124:13566-13585	MS.gene071069:CDS	35.0%
	ACTCGATGAACAAAGACAGA+AGG	+	11124:13700-13719	MS.gene071069:CDS	40.0%
	GATACTAAAGGTCCTCCTAT+CGG	-	11124:13909-13928	MS.gene071069:intergenic	40.0%
!	CAGAAGTATGATGAGGCATA+GGG	-	11124:14049-14068	MS.gene071069:intergenic	40.0%
!	TAGCTACTTGTGTTGGTGTT+CGG	-	11124:13650-13669	MS.gene071069:intergenic	40.0%
	AGATGAACCGTTCGTTTGAC+CGG	-	11124:13793-13812	MS.gene071069:intergenic	45.0%
	ATACCATAAGCCATGTGTGG+AGG	-	11124:13963-13982	MS.gene071069:intergenic	45.0%
	CGAATACCATAAGCCATGTG+TGG	-	11124:13966-13985	MS.gene071069:intergenic	45.0%
	GAGGCATAGGGTATGTCATA+GGG	-	11124:14037-14056	MS.gene071069:intergenic	45.0%
	GGACCTTTAGTATCTGCTGT+TGG	+	11124:13915-13934	MS.gene071069:CDS	45.0%
	GGTTCATCTGGAAATTCTGC+TGG	+	11124:13804-13823	MS.gene071069:CDS	45.0%
	GTGCCAACAGCAGATACTAA+AGG	-	11124:13921-13940	MS.gene071069:intergenic	45.0%
	TGAGGCATAGGGTATGTCAT+AGG	-	11124:14038-14057	MS.gene071069:intergenic	45.0%
!	AGCTACTTGTGTTGGTGTTC+GGG	-	11124:13649-13668	MS.gene071069:intergenic	45.0%
!	CTATCGGTTGTCCAATGGTA+GGG	-	11124:13893-13912	MS.gene071069:intergenic	45.0%
!	GCAGAAGTATGATGAGGCAT+AGG	-	11124:14050-14069	MS.gene071069:intergenic	45.0%
!	GCATGACTAGCTACTTGTGT+TGG	-	11124:13657-13676	MS.gene071069:intergenic	45.0%
!	TATCGGTTGTCCAATGGTAG+GGG	-	11124:13892-13911	MS.gene071069:intergenic	45.0%
!	TGAGGAGCAGAAGTATGATG+AGG	-	11124:14056-14075	MS.gene071069:intergenic	45.0%
	AAGCTGTTCCATCGACAACC+GGG	+	11124:13841-13860	MS.gene071069:CDS	50.0%
	ACAAGTACGGAAAAGGCGAC+TGG	+	11124:13595-13614	MS.gene071069:CDS	50.0%
	ACCATTGGACAACCGATAGG+AGG	+	11124:13894-13913	MS.gene071069:CDS	50.0%
	AGGAGCGGAAAGATTCACAG+GGG	-	11124:13943-13962	MS.gene071069:intergenic	50.0%
	ATAAGCCATGTGTGGAGGAG+CGG	-	11124:13958-13977	MS.gene071069:intergenic	50.0%
	ATGTATGCTGCCCCTACCAT+TGG	+	11124:13879-13898	MS.gene071069:CDS	50.0%
	CAAGCTGTTCCATCGACAAC+CGG	+	11124:13840-13859	MS.gene071069:CDS	50.0%
	CCTACCATTGGACAACCGAT+AGG	+	11124:13891-13910	MS.gene071069:CDS	50.0%
	GAGGAGCGGAAAGATTCACA+GGG	-	11124:13944-13963	MS.gene071069:intergenic	50.0%
	GGAGATGTTTCAACGCCTCA+AGG	+	11124:13759-13778	MS.gene071069:CDS	50.0%
	GGTCAAACGAACGGTTCATC+TGG	+	11124:13792-13811	MS.gene071069:CDS	50.0%
	GTCATAGGGACCATGTTCAC+TGG	-	11124:14023-14042	MS.gene071069:intergenic	50.0%
!	CCTATCGGTTGTCCAATGGT+AGG	-	11124:13894-13913	MS.gene071069:intergenic	50.0%
!	TCCTCCTATCGGTTGTCCAA+TGG	-	11124:13898-13917	MS.gene071069:intergenic	50.0%
!!	CAGGTTATTTCTTCTGGGCC+TGG	+	11124:13572-13591	MS.gene071069:CDS	50.0%
	ACCGTTCGTTTGACCGGTGA+TGG	-	11124:13787-13806	MS.gene071069:intergenic	55.0%
	AGCTGTTCCATCGACAACCG+GGG	+	11124:13842-13861	MS.gene071069:CDS	55.0%
	CCCATCACCGGTCAAACGAA+CGG	+	11124:13783-13802	MS.gene071069:CDS	55.0%
	CCGTTCGTTTGACCGGTGAT+GGG	-	11124:13786-13805	MS.gene071069:intergenic	55.0%
	CTTCTGGGCCTGGACAAGTA+CGG	+	11124:13582-13601	MS.gene071069:CDS	55.0%
	GACACAACTGTACCGGGAAC+TGG	-	11124:13993-14012	MS.gene071069:intergenic	55.0%
	GACCATGTTCACTGGTGCAC+CGG	-	11124:14015-14034	MS.gene071069:intergenic	55.0%
	GCAGCATACATTCCTGCACC+TGG	-	11124:13870-13889	MS.gene071069:intergenic	55.0%
	GCTCCTCCACACATGGCTTA+TGG	+	11124:13957-13976	MS.gene071069:CDS	55.0%
	GGAGGAGCGGAAAGATTCAC+AGG	-	11124:13945-13964	MS.gene071069:intergenic	55.0%
	GGCCTGGACAAGTACGGAAA+AGG	+	11124:13588-13607	MS.gene071069:CDS	55.0%
	GGTATTCGAGCACCAGTTCC+CGG	+	11124:13978-13997	MS.gene071069:CDS	55.0%
	GTTCCCGGTACAGTTGTGTC+CGG	+	11124:13993-14012	MS.gene071069:CDS	55.0%
	TCTTTCCGCTCCTCCACACA+TGG	+	11124:13950-13969	MS.gene071069:CDS	55.0%
	TGCACCGGACACAACTGTAC+CGG	-	11124:14000-14019	MS.gene071069:intergenic	55.0%
!	CGCCTTTTCCGTACTTGTCC+AGG	-	11124:13593-13612	MS.gene071069:intergenic	55.0%
	ACGCCTCAAGGACCCATCAC+CGG	+	11124:13771-13790	MS.gene071069:CDS	60.0%
	CATTCCTGCACCTGGTACCC+CGG	-	11124:13862-13881	MS.gene071069:intergenic	60.0%
	GCACCGGACACAACTGTACC+GGG	-	11124:13999-14018	MS.gene071069:intergenic	60.0%
	GTCCGGTGCACCAGTGAACA+TGG	+	11124:14010-14029	MS.gene071069:CDS	60.0%
!!	TGACCGGTGATGGGTCCTTG+AGG	-	11124:13777-13796	MS.gene071069:intergenic	60.0%
	CCTGGTACCCCGGTTGTCGA+TGG	-	11124:13852-13871	MS.gene071069:intergenic	65.0%
!	ACAACCGGGGTACCAGGTGC+AGG	+	11124:13855-13874	MS.gene071069:CDS	65.0%
!	CCATCGACAACCGGGGTACC+AGG	+	11124:13849-13868	MS.gene071069:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
11124	gene	13534	14078	13534	ID=MS.gene071069
11124	mRNA	13534	14078	13534	ID=MS.gene071069.t1;Parent=MS.gene071069
11124	exon	13534	14078	13534	ID=MS.gene071069.t1.exon1;Parent=MS.gene071069.t1
11124	CDS	13534	14078	13534	ID=cds.MS.gene071069.t1;Parent=MS.gene071069.t1

Gene Sequence

>MS.gene071069

ATGAAATGGTTCTCATATTTTGCTTCAAATTGGTTCAACAGGTTATTTCTTCTGGGCCTGGACAAGTACGGAAAAGGCGACTGGCGAAGCATTTCAAGAAACTTTGTTGTAACCCGAACACCAACACAAGTAGCTAGTCATGCACAAAAGTACTTCATTCGACTGAACTCGATGAACAAAGACAGAAGGCGATCGAGCATACATGACATTACAAGCGTTAACAACGGAGATGTTTCAACGCCTCAAGGACCCATCACCGGTCAAACGAACGGTTCATCTGGAAATTCTGCTGGCAAATCAGTCAAACAAGCTGTTCCATCGACAACCGGGGTACCAGGTGCAGGAATGTATGCTGCCCCTACCATTGGACAACCGATAGGAGGACCTTTAGTATCTGCTGTTGGCACCCCTGTGAATCTTTCCGCTCCTCCACACATGGCTTATGGTATTCGAGCACCAGTTCCCGGTACAGTTGTGTCCGGTGCACCAGTGAACATGGTCCCTATGACATACCCTATGCCTCATCATACTTCTGCTCCTCACAG

Protein sequence

>MS.gene071069.t1

MKWFSYFASNWFNRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSTPQGPITGQTNGSSGNSAGKSVKQAVPSTTGVPGAGMYAAPTIGQPIGGPLVSAVGTPVNLSAPPHMAYGIRAPVPGTVVSGAPVNMVPMTYPMPHHTSAPH