AlfalfaGEDB | MS.gene07123

M. sativa cultivar XinJiangDaYe / MS.gene07123

KEGG: K06632
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07123.t1	XP_003625897.1	98	490	7	1	1	487	1	490	3.30E-279	970.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07123.t1	Q8L4H0	59.1	487	187	6	2	480	15	497	1.8e-161	570.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07123.t1	G7KRU4	98.0	490	7	1	1	487	1	490	2.4e-279	970.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene024190	MS.gene07123	PPI
MS.gene033625	MS.gene07123	PPI
MS.gene07123	MS.gene051901	PPI
MS.gene07123	MS.gene73751	PPI
MS.gene23061	MS.gene07123	PPI
MS.gene55034	MS.gene07123	PPI
MS.gene59570	MS.gene07123	PPI
MS.gene79763	MS.gene07123	PPI
MS.gene86010	MS.gene07123	PPI
MS.gene95283	MS.gene07123	PPI

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07123.t1	MTR_7g108500	97.959	490	7	1	1	487	1	490	0.0	999
MS.gene07123.t1	MTR_8g071230	26.690	281	168	6	235	478	4	283	2.44e-21	96.7
MS.gene07123.t1	MTR_5g026960	26.042	288	171	7	228	478	1	283	2.49e-21	96.7
MS.gene07123.t1	MTR_2g020380	31.373	255	151	10	235	472	4	251	5.30e-20	94.4
MS.gene07123.t1	MTR_1g052115	29.730	259	161	12	234	476	3	256	5.54e-20	94.0
MS.gene07123.t1	MTR_8g098425	32.950	261	148	14	241	481	414	667	1.94e-19	92.4
MS.gene07123.t1	MTR_8g079790	29.021	286	154	12	227	476	116	388	3.03e-19	91.3
MS.gene07123.t1	MTR_4g107490	26.648	349	211	12	161	485	11	338	4.95e-19	90.5
MS.gene07123.t1	MTR_4g086660	29.304	273	142	10	239	476	141	397	5.96e-19	90.1
MS.gene07123.t1	MTR_4g094415	28.682	258	169	10	241	485	169	424	6.59e-19	89.7

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07123.t1	AT1G02970	59.138	487	187	6	2	480	15	497	0.0	589
MS.gene07123.t1	AT4G19110	26.978	278	165	6	238	478	7	283	5.75e-23	102
MS.gene07123.t1	AT4G19110	26.978	278	165	6	238	478	7	283	6.70e-23	101
MS.gene07123.t1	AT5G45430	26.619	278	166	6	238	478	7	283	1.09e-20	95.1
MS.gene07123.t1	AT5G45430	26.619	278	166	6	238	478	7	283	1.12e-20	95.1
MS.gene07123.t1	AT3G20860	29.851	268	170	11	234	487	3	266	3.52e-20	93.2
MS.gene07123.t1	AT1G49580	30.961	281	148	12	239	487	154	420	8.67e-20	92.8
MS.gene07123.t1	AT3G19100	30.000	270	144	11	239	476	148	404	1.44e-19	92.4
MS.gene07123.t1	AT1G76040	29.434	265	156	11	234	476	113	368	1.86e-19	91.7
MS.gene07123.t1	AT1G76040	29.434	265	156	11	234	476	113	368	1.87e-19	91.7

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

Find 124 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAAGATGTCGACT+GGG	0.667703	7.1:+5360216	MS.gene07123:CDS
AAAATCAAGGGGAAGGAAGA+AGG	0.477940	7.1:+5359666	MS.gene07123:CDS
AAACCCCAAAATCAAGGGGA+AGG	0.559167	7.1:+5359659	MS.gene07123:CDS
AAAGTATTAAAGCGAATAGA+TGG	0.379092	7.1:+5361891	MS.gene07123:CDS
AAATAGGGGTTACTAAAGCA+AGG	0.563788	7.1:-5361462	None:intergenic
AAATATCAACCTTGTCAAGG+TGG	0.623552	7.1:-5362722	None:intergenic
AAATCAAAATCCTTCCATTA+GGG	0.376468	7.1:+5359819	MS.gene07123:CDS
AAATCACCTATGCCAGAATC+AGG	0.426205	7.1:+5362780	MS.gene07123:CDS
AACCAAAGATCCAAATGTGC+AGG	0.530641	7.1:+5361522	MS.gene07123:CDS
AACCGGATCAGGATCAATCA+TGG	0.556561	7.1:-5363576	None:intergenic

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGACATCCTGATTC+TGG	-	chr7.1:5362795-5362814	None:intergenic	30.0%
AAAAATGGTGTCTATAAGCT+TGG	+	chr7.1:5362603-5362622	MS.gene07123:CDS	30.0%
AATTCTCATTAAGGATTTCC+TGG	-	chr7.1:5362698-5362717	None:intergenic	30.0%
ACATTGAAACTAGAAATGAC+AGG	-	chr7.1:5360889-5360908	None:intergenic	30.0%
ACTATAGATTAAGGAAACCA+TGG	-	chr7.1:5362437-5362456	None:intergenic	30.0%
AGAAAATATCAACCTTGTCA+AGG	-	chr7.1:5362728-5362747	None:intergenic	30.0%
AGAATAATCCGATGATTTCA+GGG	-	chr7.1:5360820-5360839	None:intergenic	30.0%
ATTCTCATTAAGGATTTCCT+GGG	-	chr7.1:5362697-5362716	None:intergenic	30.0%
CAAACTTCGAAACCAAAAAA+TGG	-	chr7.1:5359953-5359972	None:intergenic	30.0%
CAAATCAAAATCCTTCCATT+AGG	+	chr7.1:5359818-5359837	MS.gene07123:CDS	30.0%

Showing 1 to 10 of 266 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	5359649	5363670	5359649	ID=MS.gene07123
chr7.1	mRNA	5359649	5363670	5359649	ID=MS.gene07123.t1;Parent=MS.gene07123
chr7.1	exon	5359649	5359902	5359649	ID=MS.gene07123.t1.exon1;Parent=MS.gene07123.t1
chr7.1	CDS	5359649	5359902	5359649	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5360004	5360064	5360004	ID=MS.gene07123.t1.exon2;Parent=MS.gene07123.t1
chr7.1	CDS	5360004	5360064	5360004	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5360171	5360237	5360171	ID=MS.gene07123.t1.exon3;Parent=MS.gene07123.t1
chr7.1	CDS	5360171	5360237	5360171	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5361277	5361543	5361277	ID=MS.gene07123.t1.exon4;Parent=MS.gene07123.t1
chr7.1	CDS	5361277	5361543	5361277	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5361682	5361749	5361682	ID=MS.gene07123.t1.exon5;Parent=MS.gene07123.t1
chr7.1	CDS	5361682	5361749	5361682	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5361858	5361964	5361858	ID=MS.gene07123.t1.exon6;Parent=MS.gene07123.t1
chr7.1	CDS	5361858	5361964	5361858	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5362039	5362079	5362039	ID=MS.gene07123.t1.exon7;Parent=MS.gene07123.t1
chr7.1	CDS	5362039	5362079	5362039	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5362185	5362333	5362185	ID=MS.gene07123.t1.exon8;Parent=MS.gene07123.t1
chr7.1	CDS	5362185	5362333	5362185	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5362528	5362881	5362528	ID=MS.gene07123.t1.exon9;Parent=MS.gene07123.t1
chr7.1	CDS	5362528	5362881	5362528	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1
chr7.1	exon	5363575	5363670	5363575	ID=MS.gene07123.t1.exon10;Parent=MS.gene07123.t1
chr7.1	CDS	5363575	5363670	5363575	ID=cds.MS.gene07123.t1;Parent=MS.gene07123.t1

Gene Sequence

>MS.gene07123

ATGACCAGAAAAACCCCAAAATCAAGGGGAAGGAAGAAGGCACCACTCGGTGCGAGTAACACAAGACAGTTACAGCTTCAGCTCAGCAATTTCTCTCTCAAACAATACAAACCGTTACCAACAACGACTATAACTTCTTCCGCCTTCCAGAACCTTCTCGATTCAGAGACAAATCAAAATCCTTCCATTAGGGTTACCAATGATGCTACCGATGCTGATTCAAGAGATGGCATTCTTAGTCAAGATTTCTTCTGGTAACAACACGCTTTATCCCTTTTCATTTTCCGAAATTGAGTCGATTCCATTTTTTGGTTTCGAAGTTTGTGATGCATGTGTTTGTTTTTTTCTCTTACAGTACTCCAGATTACATAACTCCGGATAATCAGCGGATTTTGAACGGTATCGATTTCAATAAGGTGGGGTGTATTAGTAAATTAATAATTTTTTTTTAGTATCAATAAATAAAAAGATTAAAAAACTAATTTTTTTTTTTTTGTTGTTGTAATGTAATGTGTTCCGCAGGATAATAGCCCTTGCCCTAAATCCCCGGAGAAATTGAATACTACGAAAAGCAAAAGATGTCGACTGGGTATGACTTTTTATTTTTACTGCATGTTCTTACTCACTAATTGCTAATTAAATTATAATTAATTGTTTTTATTTATAAAAATATATATTTAGAAAAATAAATTGATAACATGCTAATATCAGAATAATTTTACCGTGTTTGTGTATGCACATGTATTTATAAATAGTAAAATGGATTTACTAATTTGAAAAACTGGGATGTCTCATCAAGTTTACGGGAACGAGTATGCTGTTAGCTGCAGTGCTTGATTTTTCTTGCTAGTAATACACTTTATGCATGTAGTGCGAATCAGTATGGATTGTGAACATATGTTGATGGTGATTTAGTAGTTTTTATTTCTGCTAACTTAACGTAACAGCCAAATTTGCATGAAAAATGTCTACTCATGGAATTGTACCCTACCACTTAGAAGAGACTGTAGGGTGATAGAGAAGCACATGTCTTACACCATATTCAAGAAGTATGTCATCTATGAAGCACGGACACCATAAGTATTGGATACGACATGTATGAGTGCATATCGGGTACCACTCAGAAGCCATTTTTGAGTATCTGTGCTTCAGAGTATGTGATCACCCCCCCTGAAATCATCGGATTATTCTATACTCCAGTGACCTCCCAATTGTGCATAATGGGGATATTAGAATACCTGTCATTTCTAGTTTCAATGTAGTTCTCCCAATTTATGATTTTGTAGACAATTGGGACAAAAAATCTCTAGCCCCTTTTTATGAAAGGTGTCTGGACTAAACATATCTAACTGGAGAGTGAAACCTATAGCTTAATTGTTTGTACACTATACCATGTTTTTTAATTTAATTTTCAACATATCTGGTTAAATTGTAGGAACACTGCAGAGTGTAATTACAGTCTGTGTTATTCTTTACACTCTTTCTTCAGACACTCTTATACATTCCATGCTACATAGGCTCCCATTTCCCACCACATGGAAAAATTAGTGCTGCTTTTTTTCTTTTCTTCTTATTCCAATGCTATTTATTTACCCATTTTCTCTAATCAACTTGCATACTTGTCATAGATGGTGTCTCGGCAAACCCTCTTAGCCCTACCTTTTCTGGTGACCATCAACAAGTTGTGGAGCTTGGTAAGGACTCTGTTGCAGAGGAAGTAGCTGTTGATATAACGGTAGCTGCTGGTAAGCCGAAGGCCCAGAACTATGTGTCACATTCTGCAGCTACATTGCGTTGCAGGGCTATACCTCCTCCTTGCTTTAGTAACCCCTATTTAAAGGACCTTTCCCAAAAGGAGACAGATCCCTATGCAAACCAAAGATCCAAATGTGCAGGTATCACTCTAGTCAATCCTTTACAAGTATCCCGTTCATTAATGGTGGAAAAGTCATTGTAACTGGCATGATCTTATATCTGTTGTTTTTTATTCATTTATATTGCCATTTTCTAACTGTATAATAGTATGACTGTAGGTTTCTTCCCTAAATTTACAGCTTATGATGGGCTCTCACGCTATCGCACTGACTTTCATGAGATTGAGGTACCATGTTTCAAAAGGAATTTTATTTGTTGAGAACTGTTTTGAATTGGTATTACCTTCATCGCATTCAACTTTATGGTTTTGTATAATTCTTACTTCTCTTATCAGCAAATTGGTCGAGGGTACTTTAGTTGTGTTTTTAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGTACACAGTTACAGCTGGATACAGAAAGGTATCATCTTCATACTACGGAGACTTCTTCTTTTCTTGGGTTTAACCACTAACACCGATATTCTGTGATTGAAGGAGAAAAGCTTTGATGGAGGTTCAAGCTCTGGCAGCATTGGGTTTGTATTTTATGGTTTTCTCTTATTTAAGGTTCAAGCATTGATGGAGTAGGTTTTATTCTAAATTTGTTTATCTTTATTTCGTTTATCATCTTGCCTCTATAGGTTACCATGAGAACATTGTGGGCTATTATACTTCATGGTTTGAAAACGAACAACTGTACATTCAGATGGAGATATGTGATCATAGCTTATCTGTAAACAAAGGCTCCGAGTTATTAGCAGAAGGACAAGTGTTAGAAGTTTTATATCAAGTGAGCTTCCTTGTCTGACTGTTATGTAGATTTGATTTGGTACAGATTATCATCATCAGTAACTGTTGTTATCTATGATGAAAGTCGTCCATCGTTTTTGCCATGGTTTCCTTAATCTATAGTAAACCTGCATAACTTTTTACATAATTCGTTGATCACATTCATATTTTGTTTTGATTTGGAAATTTGGACAGGTTGCTAATGCACTGCGATTTATACACGACAAGGGAATAGCTCATCTTGATCTTAAACCTGATAATATTTATGTAAAAAATGGTGTCTATAAGCTTGGTGATTTTGGATGTGCAACTCTTACTGATAGTAGCCTTCCGATTGAGGAAGGAGATGCACGTTATATGCCCCAGGAAATCCTTAATGAGAATTATGACCACCTTGACAAGGTTGATATTTTCTCCTTGGGAGTTTCTATTTATCAACTCATCCGAAAATCACCTATGCCAGAATCAGGATGTCATTTTTTGAATCTTAAAGAAGGCAAGTTGCCACTCCTGCCTGGTCATTCATTGCAATTTCAAAACTTGCTCAAGGTACTATACATTGTTTAATATCGTCAGTGATTCTCACTTCTCTGTGTTTTACATTATCTCTCAACACGTTTGCACGACTAATAAATCCAATGTGTGGTTTGTAGACTTGTAGGAGGTACTTAACAAACTAGACAAATACGTATACAAATGAACTATGATTCTATTGTGGCTATATATGTTGTTTTGATCATTGTTAAAATATGTAAGCTACTATGGTATTTTTACAAATGAACTATGATTCTATTGTGGCTATATATATTGTTTTGATCATTGTTAAAATATGTAAGCTACTATGGTATTTTTACATTGTTTTATTATATAGTGAAAATTAATCATGCTGTACTACATCTCAAAAACCATGCTGTACTACATCTCAAAAACAGAGTATGTTGTACAAAATGCTCTTTATTTATTGTTGAGTTATACAACTATCACATTTAAAATTTGTGATTTGCACAGAATTTTTTGAAGCACCATGGATTGCTGTACCTGTTTACAACTCATGTTTTATATACTTTTTGATATTCATGATATTCAACTTCATGACACATTCTTGATTTCTTGTACCAAGTAGTAAGTAGCATCGTTCTGAATTTTACGATTGCAAAATTTTCATGATGTTGTGTGCTCTTTTCTTGTTGAGCTAATATGTTTGATCTAGTAAATTTATCTGATGTTTTGATATTTATTCAGGCCATGATTGATCCTGATCCGGTTAAGAGGCCTTCTGCCAGAGAGTTGGTAGAGAACCCAATTTTCGACAGGGCCTTAAGAACAGCGAAAAATTGA

Protein sequence

>MS.gene07123.t1

MTRKTPKSRGRKKAPLGASNTRQLQLQLSNFSLKQYKPLPTTTITSSAFQNLLDSETNQNPSIRVTNDATDADSRDGILSQDFFCTPDYITPDNQRILNGIDFNKDNSPCPKSPEKLNTTKSKRCRLDGVSANPLSPTFSGDHQQVVELGKDSVAEEVAVDITVAAGKPKAQNYVSHSAATLRCRAIPPPCFSNPYLKDLSQKETDPYANQRSKCAGFFPKFTAYDGLSRYRTDFHEIEQIGRGYFSCVFKVLKRIDGCLYAVKRSTQLQLDTERRKALMEVQALAALGYHENIVGYYTSWFENEQLYIQMEICDHSLSVNKGSELLAEGQVLEVLYQVANALRFIHDKGIAHLDLKPDNIYVKNGVYKLGDFGCATLTDSSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGVSIYQLIRKSPMPESGCHFLNLKEGKLPLLPGHSLQFQNLLKAMIDPDPVKRPSARELVENPIFDRALRTAKN