AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071402

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071402.t1 MTR_3g014200 95.327 107 5 0 1 107 1 107 2.39e-75 218
MS.gene071402.t1 MTR_4g092090 94.845 97 5 0 11 107 23 119 8.79e-69 202
MS.gene071402.t1 MTR_4g092090 94.845 97 5 0 11 107 11 107 1.21e-68 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071402.t1 AT4G25315 55.140 107 46 2 1 106 1 106 9.48e-37 120
MS.gene071402.t1 AT4G25315 46.032 126 47 3 1 106 1 125 2.76e-31 107
MS.gene071402.t1 AT4G25315 48.718 78 39 1 30 106 19 96 1.04e-21 82.4

Find 21 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAACTGTCGCGGTAAA+TGG 0.205854 4.2:+20455410 MS.gene071402:CDS
CAAAATGACTTTCCTCATTC+AGG 0.208346 4.2:-20457847 None:intergenic
TACTGCCGCATTTGATAAAC+TGG 0.258041 4.2:-20455370 None:intergenic
ATCAAATGCGGCAGTATTAC+AGG 0.275072 4.2:+20455377 MS.gene071402:CDS
ACCAACCTCGACTTGAGATT+TGG 0.293709 4.2:-20455470 None:intergenic
CCAACCTCGACTTGAGATTT+GGG 0.322144 4.2:-20455469 None:intergenic
CTCGACTTGAGATTTGGGTT+TGG 0.382849 4.2:-20455464 None:intergenic
GATATGAAGCTTCACAAAAC+TGG 0.407195 4.2:+20457797 MS.gene071402:CDS
TTGATTTCTCACGAGCTTCG+AGG 0.444756 4.2:-20457744 None:intergenic
ATGCGGCAGTATTACAGGCT+TGG 0.485797 4.2:+20455382 MS.gene071402:CDS
CGATAATTTGCGTTTCATTG+TGG 0.520266 4.2:-20455215 None:intergenic
TCGAACACTTTGATGCACTC+TGG 0.542742 4.2:+20455242 MS.gene071402:CDS
GTCGCGGTAAATGGAAAGCA+TGG 0.579467 4.2:+20455419 MS.gene071402:CDS
CATTTAGACAAGCCTGAATG+AGG 0.583066 4.2:+20457835 MS.gene071402:CDS
TGTAGTTATGTCGTCAGAGA+AGG 0.583277 4.2:+20455180 None:intergenic
GTTCGAAAATTCCAGATGTG+TGG 0.583866 4.2:-20457772 None:intergenic
GGTTCTCTTGATAACTGTCG+CGG 0.618772 4.2:+20455403 MS.gene071402:CDS
ACTGCCGCATTTGATAAACT+GGG 0.632430 4.2:-20455369 None:intergenic
CAGCCCCAGTTTATCAAATG+CGG 0.642365 4.2:+20455365 MS.gene071402:intron
CAAACCCAAATCTCAAGTCG+AGG 0.664433 4.2:+20455465 MS.gene071402:CDS
CTGCCGCATTTGATAAACTG+GGG 0.687116 4.2:-20455368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATATATATATAATTGTA+AGG - chr4.2:20456870-20456889 None:intergenic 10.0%
!!! TATATTAATTTGTTTGATTA+CGG + chr4.2:20457525-20457544 MS.gene071402:intron 10.0%
!! ATATGTTCAAAATCTTTAAA+GGG + chr4.2:20455525-20455544 MS.gene071402:intron 15.0%
!! TATATGTTCAAAATCTTTAA+AGG + chr4.2:20455524-20455543 MS.gene071402:intron 15.0%
!! ATATATAAATTAGCCATTGA+TGG - chr4.2:20455509-20455528 None:intergenic 20.0%
!! TATATAAATTAGCCATTGAT+GGG - chr4.2:20455508-20455527 None:intergenic 20.0%
!! TATATATAATTGTAAGGTAC+AGG - chr4.2:20456864-20456883 None:intergenic 20.0%
! ACACAAACTTTATCAATACT+GGG - chr4.2:20455333-20455352 None:intergenic 25.0%
! ACGGTTATGTTAATTATTAG+TGG + chr4.2:20457544-20457563 MS.gene071402:intron 25.0%
! ACTAAAGACCAAATGAATAA+TGG - chr4.2:20457281-20457300 None:intergenic 25.0%
! GAATTAGAAATGATGACATT+AGG + chr4.2:20455841-20455860 MS.gene071402:intron 25.0%
! GGGTATATTTCATTGTTAAA+AGG - chr4.2:20456192-20456211 None:intergenic 25.0%
! GGTTAAATATTCTTTGAACT+TGG + chr4.2:20455546-20455565 MS.gene071402:intron 25.0%
! TAAGGACAAATAGAACAAAA+AGG - chr4.2:20455573-20455592 None:intergenic 25.0%
! TACACTTGAACTAATGTATT+TGG - chr4.2:20455802-20455821 None:intergenic 25.0%
! TATTATCTTGGATGAAATGA+TGG - chr4.2:20457340-20457359 None:intergenic 25.0%
! TCAACTGAAAATAAAAACTG+AGG + chr4.2:20456220-20456239 MS.gene071402:intron 25.0%
!! ATTTTCAGTTGAAAGATACA+GGG - chr4.2:20456212-20456231 None:intergenic 25.0%
!! TATTTTCAGTTGAAAGATAC+AGG - chr4.2:20456213-20456232 None:intergenic 25.0%
!! TTATATGTGGCTTTTAGATT+TGG - chr4.2:20456606-20456625 None:intergenic 25.0%
!! TTTTTCCTTTTGAATACTCA+CGG - chr4.2:20456489-20456508 None:intergenic 25.0%
!!! AACAAAGCCATATTTTTATG+GGG - chr4.2:20455686-20455705 None:intergenic 25.0%
!!! CAACAAAGCCATATTTTTAT+GGG - chr4.2:20455687-20455706 None:intergenic 25.0%
!!! TTACGAATTTTTTATCCATG+AGG - chr4.2:20456396-20456415 None:intergenic 25.0%
AAACTGTACGAGAAACTATT+AGG + chr4.2:20455997-20456016 MS.gene071402:intron 30.0%
AACTGAAGATCAAATGACTT+TGG - chr4.2:20455727-20455746 None:intergenic 30.0%
AAGTGTAATTTACTGTAGAC+GGG + chr4.2:20455815-20455834 MS.gene071402:intron 30.0%
ACGCAAAAAAGTTATGTTTC+GGG - chr4.2:20455292-20455311 None:intergenic 30.0%
AGAATCAAACTAAGACATGA+AGG - chr4.2:20456528-20456547 None:intergenic 30.0%
AGCACTTATAGTAGAAAAGA+TGG + chr4.2:20455878-20455897 MS.gene071402:intron 30.0%
AGTCAACTTAAAAGAAGACT+CGG - chr4.2:20456773-20456792 None:intergenic 30.0%
AGTGTGTTAGGTTTATCATA+AGG - chr4.2:20455591-20455610 None:intergenic 30.0%
ATCAATATATTTCGATCGTG+TGG - chr4.2:20457312-20457331 None:intergenic 30.0%
CAAAACTGGCAAAAAATGTA+TGG + chr4.2:20457811-20457830 MS.gene071402:CDS 30.0%
CAAGTGTAATTTACTGTAGA+CGG + chr4.2:20455814-20455833 MS.gene071402:intron 30.0%
CAATTTATAGCATTTGCCTT+TGG - chr4.2:20456670-20456689 None:intergenic 30.0%
CACACAAACTTTATCAATAC+TGG - chr4.2:20455334-20455353 None:intergenic 30.0%
CATCTGAGGATATATTATCT+TGG - chr4.2:20457352-20457371 None:intergenic 30.0%
GACGCAAAAAAGTTATGTTT+CGG - chr4.2:20455293-20455312 None:intergenic 30.0%
GGATCTATAGATAAATGAGT+TGG + chr4.2:20456022-20456041 MS.gene071402:intron 30.0%
TACAAAATACCCAAACATCA+GGG + chr4.2:20456708-20456727 MS.gene071402:intron 30.0%
TCCTACTTAACAAATGTTCT+TGG + chr4.2:20457686-20457705 MS.gene071402:intron 30.0%
TTGTCACTCCATTATTCATT+TGG + chr4.2:20457270-20457289 MS.gene071402:intron 30.0%
TTTCTGAACTGAAAAGCAAA+AGG - chr4.2:20456557-20456576 None:intergenic 30.0%
! AAACTAGACTTAGGTTGTTT+GGG + chr4.2:20455904-20455923 MS.gene071402:intron 30.0%
! TCCAAGAACATTTGTTAAGT+AGG - chr4.2:20457690-20457709 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr4.2:20456054-20456073 MS.gene071402:intron 30.0%
! TGTAGAAGATCTGAAACTAT+GGG - chr4.2:20457142-20457161 None:intergenic 30.0%
!! CCAACAAAGCCATATTTTTA+TGG - chr4.2:20455688-20455707 None:intergenic 30.0%
!! CCATAAAAATATGGCTTTGT+TGG + chr4.2:20455685-20455704 MS.gene071402:intron 30.0%
!!! AAAGCTTGTTTTTAAGCATC+TGG - chr4.2:20457075-20457094 None:intergenic 30.0%
!!! CTTCTTTTAAGTTGACTACA+CGG + chr4.2:20456776-20456795 MS.gene071402:intron 30.0%
!!! TTTTTTGCGTCTTTTACTAG+TGG + chr4.2:20455302-20455321 MS.gene071402:intron 30.0%
AAATGCAGTGAGATTAAGAG+AGG - chr4.2:20457035-20457054 None:intergenic 35.0%
AATCAAAAAAGCCACACATC+TGG + chr4.2:20457761-20457780 MS.gene071402:CDS 35.0%
ACTACAAGCTTGTGAAGTAA+AGG - chr4.2:20456908-20456927 None:intergenic 35.0%
AGATGGTAGAAACTAGACTT+AGG + chr4.2:20455895-20455914 MS.gene071402:intron 35.0%
ATCCTGAATACTTCTCAAGT+TGG - chr4.2:20457500-20457519 None:intergenic 35.0%
ATGAAATGGTTGCAAATGTG+GGG - chr4.2:20456954-20456973 None:intergenic 35.0%
ATGACATTAGGTAGAGAGTT+GGG + chr4.2:20455853-20455872 MS.gene071402:intron 35.0%
CAACCATTTCATCACTTGTT+GGG + chr4.2:20456962-20456981 MS.gene071402:intron 35.0%
CCTCAAAACAAGTTAGTAAG+TGG - chr4.2:20457219-20457238 None:intergenic 35.0%
CTACAAAATACCCAAACATC+AGG + chr4.2:20456707-20456726 MS.gene071402:intron 35.0%
GAACAGGATAGCAGAATAAA+TGG - chr4.2:20457245-20457264 None:intergenic 35.0%
GAGAGGATGATGTTTATATG+TGG - chr4.2:20456619-20456638 None:intergenic 35.0%
GATATGAAGCTTCACAAAAC+TGG + chr4.2:20457797-20457816 MS.gene071402:CDS 35.0%
GATGAAATGGTTGCAAATGT+GGG - chr4.2:20456955-20456974 None:intergenic 35.0%
GGCAAATGCTATAAATTGCA+TGG + chr4.2:20456672-20456691 MS.gene071402:intron 35.0%
GTATTGGACAAAATTCACTG+AGG - chr4.2:20456306-20456325 None:intergenic 35.0%
TAAATCATAACACGTCTCTG+CGG - chr4.2:20456163-20456182 None:intergenic 35.0%
TAAGTAGGAGAACACTAGAA+TGG - chr4.2:20457675-20457694 None:intergenic 35.0%
TATCCCAACAAGTGATGAAA+TGG - chr4.2:20456968-20456987 None:intergenic 35.0%
TCCTGAATACTTCTCAAGTT+GGG - chr4.2:20457499-20457518 None:intergenic 35.0%
TGATAAACCTAACACACTCT+TGG + chr4.2:20455593-20455612 MS.gene071402:intron 35.0%
TGATGAAATGGTTGCAAATG+TGG - chr4.2:20456956-20456975 None:intergenic 35.0%
TGTACGAGAAACTATTAGGA+AGG + chr4.2:20456001-20456020 MS.gene071402:intron 35.0%
TTAGATTTGGCATCAAGACT+TGG - chr4.2:20456593-20456612 None:intergenic 35.0%
TTCTACAGAGACTGAATATC+AGG + chr4.2:20457155-20457174 MS.gene071402:intron 35.0%
TTGTTGGCCCCATAAAAATA+TGG + chr4.2:20455676-20455695 MS.gene071402:intron 35.0%
! AAAGTTATGTTTCGGGTGAA+TGG - chr4.2:20455285-20455304 None:intergenic 35.0%
! AAATGAGTTGGAGAAAGACA+TGG + chr4.2:20456034-20456053 MS.gene071402:intron 35.0%
! AGGTGTTTCTGTAGCAAAAT+AGG + chr4.2:20456328-20456347 MS.gene071402:intron 35.0%
! ATGGGCTTTTCTTTATCTGT+AGG - chr4.2:20457124-20457143 None:intergenic 35.0%
! ATGTTTGGGTATTTTGTAGC+TGG - chr4.2:20456706-20456725 None:intergenic 35.0%
! CGATAATTTGCGTTTCATTG+TGG - chr4.2:20455218-20455237 None:intergenic 35.0%
! CTGTAGAAGATCTGAAACTA+TGG - chr4.2:20457143-20457162 None:intergenic 35.0%
! GAAACTAGACTTAGGTTGTT+TGG + chr4.2:20455903-20455922 MS.gene071402:intron 35.0%
! GTGAATTTTGTCCAATACAC+AGG + chr4.2:20456308-20456327 MS.gene071402:intron 35.0%
! GTGTTGCTGGTGAATTAATT+TGG + chr4.2:20457188-20457207 MS.gene071402:intron 35.0%
! GTTTCTCGTACAGTTTTTCT+AGG - chr4.2:20455993-20456012 None:intergenic 35.0%
! TAAATTAGCCATTGATGGGT+AGG - chr4.2:20455504-20455523 None:intergenic 35.0%
! TGTTTGGGTATTTTGTAGCT+GGG - chr4.2:20456705-20456724 None:intergenic 35.0%
!! GCTTTGTTTATAGGAGGAAA+GGG - chr4.2:20456461-20456480 None:intergenic 35.0%
!!! CATTGATTTTGACAGTTCAG+TGG + chr4.2:20456747-20456766 MS.gene071402:intron 35.0%
!!! CCACTTACTAACTTGTTTTG+AGG + chr4.2:20457216-20457235 MS.gene071402:intron 35.0%
AAGGAAAAACAGTGCGAAGT+TGG + chr4.2:20456500-20456519 MS.gene071402:intron 40.0%
ACTGCCGCATTTGATAAACT+GGG - chr4.2:20455372-20455391 None:intergenic 40.0%
AGTCAGATCACTAGAGTTAG+GGG + chr4.2:20455963-20455982 MS.gene071402:intron 40.0%
ATCAAATGCGGCAGTATTAC+AGG + chr4.2:20455377-20455396 MS.gene071402:CDS 40.0%
ATCGATTGACCCTGATGTTT+GGG - chr4.2:20456720-20456739 None:intergenic 40.0%
ATCTTCAGTTGTCATCTGCT+TGG + chr4.2:20455737-20455756 MS.gene071402:intron 40.0%
ATTGTAAGGTACAGGCAGTA+TGG - chr4.2:20456856-20456875 None:intergenic 40.0%
ATTTCGATCGTGTGGAACAT+TGG - chr4.2:20457304-20457323 None:intergenic 40.0%
CTACAGAAACACCTGTGTAT+TGG - chr4.2:20456322-20456341 None:intergenic 40.0%
CTTCTCCGTGAGTATTCAAA+AGG + chr4.2:20456481-20456500 MS.gene071402:intron 40.0%
GAGAAGACTAGTAGATCAGA+TGG + chr4.2:20455935-20455954 MS.gene071402:intron 40.0%
GAGACTGAATATCAGGCTAT+TGG + chr4.2:20457162-20457181 MS.gene071402:intron 40.0%
GAGTCAGATCACTAGAGTTA+GGG + chr4.2:20455962-20455981 MS.gene071402:intron 40.0%
GATGACATTAGGTAGAGAGT+TGG + chr4.2:20455852-20455871 MS.gene071402:intron 40.0%
GCAACCATTTCATCACTTGT+TGG + chr4.2:20456961-20456980 MS.gene071402:intron 40.0%
GGATACTTAAACACATTGCC+AGG + chr4.2:20456983-20457002 MS.gene071402:intron 40.0%
GTGAATAAAATACCTCAGCC+TGG - chr4.2:20457004-20457023 None:intergenic 40.0%
GTTCGAAAATTCCAGATGTG+TGG - chr4.2:20457775-20457794 None:intergenic 40.0%
TAATGCTTGAGACTGAAGCA+CGG - chr4.2:20456821-20456840 None:intergenic 40.0%
TACTGCCGCATTTGATAAAC+TGG - chr4.2:20455373-20455392 None:intergenic 40.0%
TATAGCATTTGCCTTTGGTG+TGG - chr4.2:20456665-20456684 None:intergenic 40.0%
TCCTATTTCCTACCCATCAA+TGG + chr4.2:20455493-20455512 MS.gene071402:intron 40.0%
TGACATTAGGTAGAGAGTTG+GGG + chr4.2:20455854-20455873 MS.gene071402:intron 40.0%
TGCAAATGTGGGGTACAAAT+TGG - chr4.2:20456944-20456963 None:intergenic 40.0%
TGGAGTGACAATCTAAGAAC+AGG - chr4.2:20457261-20457280 None:intergenic 40.0%
TTCTCAGCTTAGACAGTAAG+AGG - chr4.2:20457460-20457479 None:intergenic 40.0%
TTGAGCGAATACAACTCTCT+TGG + chr4.2:20457638-20457657 MS.gene071402:intron 40.0%
TTGTAAGGTACAGGCAGTAT+GGG - chr4.2:20456855-20456874 None:intergenic 40.0%
! AAGTCTTATCCCACTAAGTG+GGG - chr4.2:20456103-20456122 None:intergenic 40.0%
! ATGCCAAAAGGTGTATAGAG+AGG - chr4.2:20456636-20456655 None:intergenic 40.0%
! CAAGTCTTATCCCACTAAGT+GGG - chr4.2:20456104-20456123 None:intergenic 40.0%
! CATCCTCTCTATACACCTTT+TGG + chr4.2:20456630-20456649 MS.gene071402:intron 40.0%
! CTTTTGAATACTCACGGAGA+AGG - chr4.2:20456483-20456502 None:intergenic 40.0%
! TATCGATTGACCCTGATGTT+TGG - chr4.2:20456721-20456740 None:intergenic 40.0%
! TTGATAACTGTCGCGGTAAA+TGG + chr4.2:20455410-20455429 MS.gene071402:CDS 40.0%
!! ACGGAGAAGGCTTTGTTTAT+AGG - chr4.2:20456470-20456489 None:intergenic 40.0%
!! GAGAAGGCTTTGTTTATAGG+AGG - chr4.2:20456467-20456486 None:intergenic 40.0%
!! GGACATGGAAATAGCTTTGT+TGG + chr4.2:20455660-20455679 MS.gene071402:intron 40.0%
!! GGCTTTGTTTATAGGAGGAA+AGG - chr4.2:20456462-20456481 None:intergenic 40.0%
!! GGGTACAAATTGGCTTTAGA+TGG - chr4.2:20456934-20456953 None:intergenic 40.0%
!! GTTTTTAAGCATCTGGTGTC+TGG - chr4.2:20457068-20457087 None:intergenic 40.0%
!! TCCCAACTTGAGAAGTATTC+AGG + chr4.2:20457495-20457514 MS.gene071402:intron 40.0%
!! TGAGGTGATATACTGACTTG+AGG - chr4.2:20456263-20456282 None:intergenic 40.0%
AAACTGAGGAGTCTCTCTCA+AGG + chr4.2:20456234-20456253 MS.gene071402:intron 45.0%
AAGAGCAGAAACTGACTAGC+TGG - chr4.2:20457435-20457454 None:intergenic 45.0%
AGAATCACTCAGAGTGACAG+AGG + chr4.2:20457392-20457411 MS.gene071402:intron 45.0%
CAAACCCAAATCTCAAGTCG+AGG + chr4.2:20455465-20455484 MS.gene071402:CDS 45.0%
CAGCCCCAGTTTATCAAATG+CGG + chr4.2:20455365-20455384 MS.gene071402:intron 45.0%
CAGTATATCACCTCACTTCG+TGG + chr4.2:20456268-20456287 MS.gene071402:intron 45.0%
CCACTTAGTGGGATAAGACT+TGG + chr4.2:20456102-20456121 MS.gene071402:intron 45.0%
CTGCCGCATTTGATAAACTG+GGG - chr4.2:20455371-20455390 None:intergenic 45.0%
GACCTATAGCTCACAAAGTC+AGG + chr4.2:20455639-20455658 MS.gene071402:intron 45.0%
GACTAGTAGATCAGATGGAG+AGG + chr4.2:20455940-20455959 MS.gene071402:intron 45.0%
GCTATATGTAACCCATGTGC+AGG + chr4.2:20457717-20457736 MS.gene071402:intron 45.0%
GGAGTCAGATCACTAGAGTT+AGG + chr4.2:20455961-20455980 MS.gene071402:intron 45.0%
GTACATGATGTGCATCCTCA+TGG + chr4.2:20456378-20456397 MS.gene071402:intron 45.0%
GTCCTGACTTTGTGAGCTAT+AGG - chr4.2:20455644-20455663 None:intergenic 45.0%
GTGTGGCTAAAGATGCCAAA+AGG - chr4.2:20456648-20456667 None:intergenic 45.0%
TAGCTCACAAAGTCAGGACA+TGG + chr4.2:20455645-20455664 MS.gene071402:intron 45.0%
TCGAACACTTTGATGCACTC+TGG + chr4.2:20455242-20455261 MS.gene071402:CDS 45.0%
TGATGTTGGGACTTCATCTG+AGG - chr4.2:20457366-20457385 None:intergenic 45.0%
TGATTCTGCCAGCTGATGTT+GGG - chr4.2:20457379-20457398 None:intergenic 45.0%
TTAAACACATTGCCAGGCTG+AGG + chr4.2:20456989-20457008 MS.gene071402:intron 45.0%
TTGATTTCTCACGAGCTTCG+AGG - chr4.2:20457747-20457766 None:intergenic 45.0%
TTTGGCATCAAGACTTGGCT+TGG - chr4.2:20456588-20456607 None:intergenic 45.0%
! ACCAACCTCGACTTGAGATT+TGG - chr4.2:20455473-20455492 None:intergenic 45.0%
! AGGCTATTGGTTAGTGTTGC+TGG + chr4.2:20457175-20457194 MS.gene071402:intron 45.0%
! CCAACCTCGACTTGAGATTT+GGG - chr4.2:20455472-20455491 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - chr4.2:20456105-20456124 None:intergenic 45.0%
! CTCGACTTGAGATTTGGGTT+TGG - chr4.2:20455467-20455486 None:intergenic 45.0%
! GCCATTGATGGGTAGGAAAT+AGG - chr4.2:20455497-20455516 None:intergenic 45.0%
! GGTTCTCTTGATAACTGTCG+CGG + chr4.2:20455403-20455422 MS.gene071402:CDS 45.0%
! TGAGAAGCCAAGAGTGTGTT+AGG - chr4.2:20455603-20455622 None:intergenic 45.0%
! TTGGGTATTTTGTAGCTGGG+AGG - chr4.2:20456702-20456721 None:intergenic 45.0%
ATGCGGCAGTATTACAGGCT+TGG + chr4.2:20455382-20455401 MS.gene071402:CDS 50.0%
ATGGCGTCGTTTGAGTCATG+TGG + chr4.2:20456073-20456092 MS.gene071402:intron 50.0%
CCCAAATCTCAAGTCGAGGT+TGG + chr4.2:20455469-20455488 MS.gene071402:intron 50.0%
GATGAAGTCCCAACATCAGC+TGG + chr4.2:20457368-20457387 MS.gene071402:intron 50.0%
GGAGGAAAGGGACTGTTGAT+AGG - chr4.2:20456449-20456468 None:intergenic 50.0%
GGCATCTTTAGCCACACCAA+AGG + chr4.2:20456651-20456670 MS.gene071402:intron 50.0%
GTCGCGGTAAATGGAAAGCA+TGG + chr4.2:20455419-20455438 MS.gene071402:CDS 50.0%
GTGATTCTGCCAGCTGATGT+TGG - chr4.2:20457380-20457399 None:intergenic 50.0%
TTCGAGGACTTCCTGCACAT+GGG - chr4.2:20457731-20457750 None:intergenic 50.0%
! ACTGACTAGCTGGAAGGAAG+AGG - chr4.2:20457425-20457444 None:intergenic 50.0%
! GCAGAAACTGACTAGCTGGA+AGG - chr4.2:20457431-20457450 None:intergenic 50.0%
ATGTGGCTGACCCCACTTAG+TGG + chr4.2:20456090-20456109 MS.gene071402:intron 55.0%
CACCTCACTTCGTGGTCGTT+GGG + chr4.2:20456276-20456295 MS.gene071402:intron 55.0%
CTTCGAGGACTTCCTGCACA+TGG - chr4.2:20457732-20457751 None:intergenic 55.0%
TCACCTCACTTCGTGGTCGT+TGG + chr4.2:20456275-20456294 MS.gene071402:intron 55.0%
TGTGGCTGACCCCACTTAGT+GGG + chr4.2:20456091-20456110 MS.gene071402:intron 55.0%
TTCCCAACGACCACGAAGTG+AGG - chr4.2:20456281-20456300 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 20455187 20457855 20455187 ID=MS.gene071402
chr4.2 mRNA 20455187 20457855 20455187 ID=MS.gene071402.t1;Parent=MS.gene071402
chr4.2 exon 20455187 20455274 20455187 ID=MS.gene071402.t1.exon1;Parent=MS.gene071402.t1
chr4.2 CDS 20455187 20455274 20455187 ID=cds.MS.gene071402.t1;Parent=MS.gene071402.t1
chr4.2 exon 20455368 20455486 20455368 ID=MS.gene071402.t1.exon2;Parent=MS.gene071402.t1
chr4.2 CDS 20455368 20455486 20455368 ID=cds.MS.gene071402.t1;Parent=MS.gene071402.t1
chr4.2 exon 20457739 20457855 20457739 ID=MS.gene071402.t1.exon3;Parent=MS.gene071402.t1
chr4.2 CDS 20457739 20457855 20457739 ID=cds.MS.gene071402.t1;Parent=MS.gene071402.t1
Gene Sequence

>MS.gene071402

ATGTCGTCAGAGAAGGAAGATTCAAGCTCCACAATGAAACGCAAATTATCGTGCTTCGAACACTTTGATGCACTCTGGTTCTGCTACTGTAATCACCATTCACCCGAAACATAACTTTTTTGCGTCTTTTACTAGTGGATCATCCCAGTATTGATAAAGTTTGTGTGTTTAATGTGTGCAGCCCCAGTTTATCAAATGCGGCAGTATTACAGGCTTGGTTCTCTTGATAACTGTCGCGGTAAATGGAAAGCATGGACTGACTGCTTAATGCTCAAGACCAAACCCAAATCTCAAGTCGAGGTTGGTTCCTATTTCCTACCCATCAATGGCTAATTTATATATGTTCAAAATCTTTAAAGGGTTAAATATTCTTTGAACTTGGTCCTTTTTGTTCTATTTGTCCTTATGATAAACCTAACACACTCTTGGCTTCTCAGTCATTGACTAAGTGAGACCTATAGCTCACAAAGTCAGGACATGGAAATAGCTTTGTTGGCCCCATAAAAATATGGCTTTGTTGGCTCAATTCTACAGCAGCCAAAGTCATTTGATCTTCAGTTGTCATCTGCTTGGTAGATGAATTTTTTTCTTCTCAATTATTAAAATTAATTGCCAAATACATTAGTTCAAGTGTAATTTACTGTAGACGGGATAGAATTAGAAATGATGACATTAGGTAGAGAGTTGGGGTAGCACTTATAGTAGAAAAGATGGTAGAAACTAGACTTAGGTTGTTTGGGAATGTAGAGAGAAGACTAGTAGATCAGATGGAGAGGAGTCAGATCACTAGAGTTAGGGGTAGACCTAGAAAAACTGTACGAGAAACTATTAGGAAGGATCTATAGATAAATGAGTTGGAGAAAGACATGGTTTTTGATAGAACACTATGGCGTCGTTTGAGTCATGTGGCTGACCCCACTTAGTGGGATAAGACTTGGTTGTTGTTGTTGAAGTGTAATCTACTGTAAAACTGCCGCAGAGACGTGTTATGATTTATTTGAGCCTTTTAACAATGAAATATACCCTGTATCTTTCAACTGAAAATAAAAACTGAGGAGTCTCTCTCAAGGTTTCCTCAAGTCAGTATATCACCTCACTTCGTGGTCGTTGGGAAGACCTCAGTGAATTTTGTCCAATACACAGGTGTTTCTGTAGCAAAATAGGATCAGTTGTCGAAGACTATCGCATGCAGTACATGATGTGCATCCTCATGGATAAAAAATTCGTAATGACTGCTTTTCTCTAATCAAAGATCAAATCCTATCAACAGTCCCTTTCCTCCTATAAACAAAGCCTTCTCCGTGAGTATTCAAAAGGAAAAACAGTGCGAAGTTGGTTCCTTCATGTCTTAGTTTGATTCTACAGTTCCTTTTGCTTTTCAGTTCAGAAAAAGCAATTCCAAGCCAAGTCTTGATGCCAAATCTAAAAGCCACATATAAACATCATCCTCTCTATACACCTTTTGGCATCTTTAGCCACACCAAAGGCAAATGCTATAAATTGCATGGCTATCCTCCCAGCTACAAAATACCCAAACATCAGGGTCAATCGATAAACATTCATTGATTTTGACAGTTCAGTGGCCGAGTCTTCTTTTAAGTTGACTACACGGCAATATCAACAATTGATGTCCGTGCTTCAGTCTCAAGCATTACATGTGTATGTCCCATACTGCCTGTACCTTACAATTATATATATATATGTTTTAAATAAATCATCCTTTACTTCACAAGCTTGTAGTTAACCATCTAAAGCCAATTTGTACCCCACATTTGCAACCATTTCATCACTTGTTGGGATACTTAAACACATTGCCAGGCTGAGGTATTTTATTCACTTCTGTCTCCTCTCTTAATCTCACTGCATTTACGCAGTTGACCAGACACCAGATGCTTAAAAACAAGCTTTTGTGTATTTTTGAGATTCATCAATTTCCTACAGATAAAGAAAAGCCCATAGTTTCAGATCTTCTACAGAGACTGAATATCAGGCTATTGGTTAGTGTTGCTGGTGAATTAATTTGGCTCAACCACTTACTAACTTGTTTTGAGGTTACCATTTATTCTGCTATCCTGTTCTTAGATTGTCACTCCATTATTCATTTGGTCTTTAGTCCAATGTTCCACACGATCGAAATATATTGATATTGACCATCATTTCATCCAAGATAATATATCCTCAGATGAAGTCCCAACATCAGCTGGCAGAATCACTCAGAGTGACAGAGGCAAAGAGCCTCTTCCTTCCAGCTAGTCAGTTTCTGCTCTTTGCCTCTTACTGTCTAAGCTGAGAATTTCAAACACTCAGTTCCCAACTTGAGAAGTATTCAGGATTAATATATATTAATTTGTTTGATTACGGTTATGTTAATTATTAGTGGCAGTTAGTATCGTTTAATGTTGCTTAGTCTGTTTCAGAGCTACACTGTATATTAGATTAGATCACAAGTATTTGAGCGAATACAACTCTCTTGGATCGTGTTTTTCCATTCTAGTGTTCTCCTACTTAACAAATGTTCTTGGAGTAACAAGCTATATGTAACCCATGTGCAGGAAGTCCTCGAAGCTCGTGAGAAATCAAAAAAGCCACACATCTGGAATTTTCGAACGCGATATGAAGCTTCACAAAACTGGCAAAAAATGTATGGTCATTTAGACAAGCCTGAATGA
Protein sequence

>MS.gene071402.t1

MSSEKEDSSSTMKRKLSCFEHFDALWFCYSPVYQMRQYYRLGSLDNCRGKWKAWTDCLMLKTKPKSQVEEVLEAREKSKKPHIWNFRTRYEASQNWQKMYGHLDKPE