AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050646


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050646.t1 MTR_7g117320 94.702 453 24 0 1 453 1 453 0.0 822
MS.gene050646.t1 MTR_3g091250 49.254 67 34 0 399 465 238 304 2.77e-11 65.9
MS.gene050646.t1 MTR_3g091250 49.254 67 34 0 399 465 186 252 3.63e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050646.t1 AT4G01000 46.239 452 189 13 4 453 3 402 8.68e-103 313
MS.gene050646.t1 AT4G01000 46.239 452 189 13 4 453 3 402 8.68e-103 313
MS.gene050646.t1 AT3G06455 32.222 450 185 9 4 453 3 332 1.16e-34 132

Find 133 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCGGAGAAGGGAATAAT+AGG 0.252349 7.3:+969249 None:intergenic
TTGGTGTTGGATTGGGATTC+CGG 0.265300 7.3:+969187 None:intergenic
CGAATAGATTGAACATTCTA+TGG 0.271409 7.3:+969300 None:intergenic
AAGCGGGATGGAGACTCTTC+TGG 0.272046 7.3:-967688 MS.gene050646:CDS
ACAGATGAAGAAGAATAATA+AGG 0.283291 7.3:-968856 MS.gene050646:CDS
TTCTTTGCTAGCAGTTTCTT+TGG 0.292463 7.3:+966815 None:intergenic
GGTTGGAGGAGTGGAGAGAA+GGG 0.313958 7.3:-968926 MS.gene050646:CDS
ATCGGATCTTCACAGGTTCT+TGG 0.315422 7.3:-966950 MS.gene050646:intron
TTAAGAGGATCGTCCTTTGC+TGG 0.333012 7.3:+967310 None:intergenic
GCGTAAATCTTCGCCTATAT+CGG 0.339518 7.3:-968715 MS.gene050646:CDS
CGAGGTTGCTGAGTCTGTTC+AGG 0.354811 7.3:-968757 MS.gene050646:CDS
TTAAATAGTCAGAATGAGTC+TGG 0.356655 7.3:-967754 MS.gene050646:CDS
ACCATCAATTTCCATGTCAT+TGG 0.359097 7.3:+967387 None:intergenic
ATCTTCACAGGTTCTTGGCT+TGG 0.364032 7.3:-966945 MS.gene050646:intron
GGGAACATGTTTCCACCTTC+CGG 0.368138 7.3:+969107 None:intergenic
GAAGGAGAACCTTCCGATAT+AGG 0.369001 7.3:+968702 None:intergenic
GAGAAGGGAATAATAGGGTT+AGG 0.370011 7.3:+969255 None:intergenic
CCTCAATACTTTCAGTACTC+TGG 0.376570 7.3:+967587 None:intergenic
GGAGTGGAGAGAAGGGGAAG+AGG 0.388448 7.3:-968919 MS.gene050646:CDS
AGGTTGGAGGAGTGGAGAGA+AGG 0.392752 7.3:-968927 MS.gene050646:CDS
CGTGGTGCAGCGACGAAAGC+GGG 0.393471 7.3:-969026 MS.gene050646:CDS
CGAGGCGTTGGTGTTGGATT+GGG 0.395123 7.3:+969180 None:intergenic
ATCGTTGAGGTGGCGGGAAC+CGG 0.398823 7.3:+969154 None:intergenic
GAATGAGTCTGGGTTAAATA+AGG 0.399492 7.3:-967743 MS.gene050646:CDS
ACGAGGCGTTGGTGTTGGAT+TGG 0.404455 7.3:+969179 None:intergenic
AGCGGGATGGAGACTCTTCT+GGG 0.412894 7.3:-967687 MS.gene050646:CDS
TTCAGAGCTCACAACATTTG+AGG 0.417451 7.3:+967417 None:intergenic
GAAGTATGTTGCTAAGTATA+GGG 0.417452 7.3:-968802 MS.gene050646:CDS
GATGGAGACTCTTCTGGGGT+TGG 0.417585 7.3:-967682 MS.gene050646:CDS
GTTTCTTTGGAAGTTTATCC+AGG 0.422846 7.3:+966828 None:intergenic
CGAATAATTTCGACGCGTGT+AGG 0.422974 7.3:-968992 MS.gene050646:CDS
GGCAGTTCTGATTCTGTGAC+TGG 0.424980 7.3:-967715 MS.gene050646:CDS
ATCAGAAGAAGTTGAAGATA+TGG 0.428385 7.3:-968674 MS.gene050646:intron
CGGAGAAGAGGTTGGAGGAG+TGG 0.436627 7.3:-968935 MS.gene050646:CDS
AGAAGTATGTTGCTAAGTAT+AGG 0.436725 7.3:-968803 MS.gene050646:CDS
AAAATGTGGAGGTACCTTGC+AGG 0.440077 7.3:-966888 MS.gene050646:CDS
CTCCGTCTGAAAGGCGGTAA+AGG 0.443798 7.3:-969068 MS.gene050646:CDS
CAGATGAAGAAGAATAATAA+GGG 0.448440 7.3:-968855 MS.gene050646:CDS
GGAGAGAAGGGGAAGAGGAT+AGG 0.451676 7.3:-968914 MS.gene050646:CDS
AGAAGGGAATAATAGGGTTA+GGG 0.459079 7.3:+969256 None:intergenic
TATCATGATAACAAGGTTGA+TGG 0.462781 7.3:-967454 MS.gene050646:CDS
GGATAGGAAGCTTGAGAAAA+CGG 0.463315 7.3:-968898 MS.gene050646:CDS
CTCAATACTTTCAGTACTCT+GGG 0.463892 7.3:+967588 None:intergenic
GAGTGGATCTGAAGAAGAAA+AGG 0.466233 7.3:-967650 MS.gene050646:CDS
AAAGGCGGTAAAGGAGGATT+CGG 0.469823 7.3:-969059 MS.gene050646:CDS
ATTATCATCGTTGAGGTGGC+GGG 0.484942 7.3:+969148 None:intergenic
GAAGAAGAAAAGGAAACTGT+TGG 0.487707 7.3:-967640 MS.gene050646:CDS
TTTGCTGGAACACCAGTGCT+TGG 0.490464 7.3:+967325 None:intergenic
AATAAGGGCAAGGGCAAGAA+TGG 0.492932 7.3:-968840 MS.gene050646:CDS
GAATAATTTCGACGCGTGTA+GGG 0.498052 7.3:-968991 MS.gene050646:CDS
ATCATTTCATCATTTACCAT+GGG 0.501811 7.3:+967541 None:intergenic
AATTATCATCGTTGAGGTGG+CGG 0.504423 7.3:+969147 None:intergenic
CGTCTTCTTCTCCGTCTGAA+AGG 0.504795 7.3:-969077 MS.gene050646:CDS
CGGAGAAGAAGACGAACGGA+GGG 0.514068 7.3:+969086 None:intergenic
CATGGTAAATGATGAAATGA+TGG 0.514855 7.3:-967539 MS.gene050646:CDS
CGGTGACGAGGCGTTGGTGT+TGG 0.515309 7.3:+969174 None:intergenic
CATCATTTCATCATTTACCA+TGG 0.515931 7.3:+967540 None:intergenic
GAAGAAAGCTTGCCAAGCAC+TGG 0.520320 7.3:-967337 MS.gene050646:CDS
CTCCTTTACCGCCTTTCAGA+CGG 0.522600 7.3:+969066 None:intergenic
TGTGCCTTGTTCAGAGACCT+TGG 0.531201 7.3:-967506 MS.gene050646:CDS
TCGTGGTGCAGCGACGAAAG+CGG 0.531952 7.3:-969027 MS.gene050646:CDS
GATCGGAGAAGGGAATAATA+GGG 0.534916 7.3:+969250 None:intergenic
AACACTAATTAAAGAATCCA+AGG 0.536283 7.3:+967489 None:intergenic
GTTGGAGGAGTGGAGAGAAG+GGG 0.539071 7.3:-968925 MS.gene050646:CDS
TAATTCAGCTGCAGAACTTG+AGG 0.539580 7.3:-967275 MS.gene050646:intron
GAAGAAGAATAATAAGGGCA+AGG 0.542452 7.3:-968850 MS.gene050646:CDS
GCGATATGTTGTTCGCCGGA+AGG 0.548179 7.3:-969122 MS.gene050646:CDS
TTCTGTGACTGGTTTCAAGC+GGG 0.549906 7.3:-967704 MS.gene050646:CDS
GTAGCGGAAAGGATCGGAGA+AGG 0.550135 7.3:+969239 None:intergenic
ATATGAGTGGGAGAAGATTG+AGG 0.556377 7.3:-968968 MS.gene050646:CDS
GTGACTGGTTTCAAGCGGGA+TGG 0.556871 7.3:-967700 MS.gene050646:CDS
TCCAATGACATGGAAATTGA+TGG 0.558112 7.3:-967388 MS.gene050646:CDS
ACGATCTTTGATTGAAGTAG+CGG 0.558230 7.3:+969223 None:intergenic
TTCCGCGATATGTTGTTCGC+CGG 0.561311 7.3:-969126 MS.gene050646:CDS
CGAAGATGTTATTGATGACG+AGG 0.561323 7.3:-967800 MS.gene050646:CDS
TAATGCGGAGAAGAGGTTGG+AGG 0.564677 7.3:-968940 MS.gene050646:CDS
GGGAACCGGTGACGAGGCGT+TGG 0.566804 7.3:+969168 None:intergenic
CAACACCAACGCCTCGTCAC+CGG 0.567659 7.3:-969173 MS.gene050646:CDS
AAGCACTGGTGTTCCAGCAA+AGG 0.570107 7.3:-967323 MS.gene050646:CDS
AACTTCTTCTGATCACGAGA+AGG 0.570934 7.3:+968684 None:intergenic
TGTTAATGCGGAGAAGAGGT+TGG 0.572981 7.3:-968943 MS.gene050646:CDS
GAAAAGGAAACTGTTGGAGA+AGG 0.579332 7.3:-967634 MS.gene050646:CDS
CTGAACAGACTCAGCAACCT+CGG 0.579574 7.3:+968758 None:intergenic
AAGAAGAATAATAAGGGCAA+GGG 0.580783 7.3:-968849 MS.gene050646:CDS
ATTGAAGTAGCGGAAAGGAT+CGG 0.580875 7.3:+969233 None:intergenic
ATTCTGTGACTGGTTTCAAG+CGG 0.583157 7.3:-967705 MS.gene050646:CDS
GAATCCAAGGTCTCTGAACA+AGG 0.583373 7.3:+967502 None:intergenic
CAGTCACGTGGGTTAAAATG+TGG 0.586278 7.3:-966902 MS.gene050646:CDS
AAGACTGAACTCCAGTCACG+TGG 0.587749 7.3:-966914 MS.gene050646:CDS
TTTCTTTGGAAGTTTATCCA+GGG 0.590609 7.3:+966829 None:intergenic
ATATGTTGTTCGCCGGAAGG+TGG 0.591093 7.3:-969119 MS.gene050646:CDS
GGGCAAGAATGGTGATGTTG+AGG 0.591724 7.3:-968829 MS.gene050646:CDS
GGATTGGGATTCCGGTGAGA+TGG 0.592670 7.3:+969195 None:intergenic
CCAGAGTACTGAAAGTATTG+AGG 0.594120 7.3:-967587 MS.gene050646:CDS
GGGGTTGGTTCGTGTGAGAG+TGG 0.594468 7.3:-967667 MS.gene050646:CDS
CGATGATTATCATGATAACA+AGG 0.595765 7.3:-967461 MS.gene050646:CDS
TTCTTTGGAAGTTTATCCAG+GGG 0.596324 7.3:+966830 None:intergenic
CGTCTGAAAGGCGGTAAAGG+AGG 0.596613 7.3:-969065 MS.gene050646:CDS
CCTTGCAGGAACGTGCTGCA+AGG 0.598001 7.3:-966874 MS.gene050646:CDS
CGGAATTATCATCGTTGAGG+TGG 0.598427 7.3:+969144 None:intergenic
CTTCTTCTCCGTCTGAAAGG+CGG 0.598481 7.3:-969074 MS.gene050646:CDS
GATAACAAGGTTGATGGCAC+TGG 0.601861 7.3:-967448 MS.gene050646:CDS
GGCATGTTAATGCGGAGAAG+AGG 0.603161 7.3:-968947 MS.gene050646:CDS
TAAATAGTCAGAATGAGTCT+GGG 0.611598 7.3:-967753 MS.gene050646:CDS
GAGTATTGCTGCTGAACCCA+TGG 0.612217 7.3:-967557 MS.gene050646:CDS
CCTTGCAGCACGTTCCTGCA+AGG 0.614731 7.3:+966874 None:intergenic
AAATCTTCGCCTATATCGGA+AGG 0.617442 7.3:-968711 MS.gene050646:CDS
GGATTCGGATCGTTGCTTCG+TGG 0.620283 7.3:-969044 MS.gene050646:CDS
GGTGGCGGGAACCGGTGACG+AGG 0.621479 7.3:+969162 None:intergenic
GAAGCTTGAGAAAACGGCGG+AGG 0.622107 7.3:-968892 MS.gene050646:CDS
TGAAGTTGTGTCCAATGACA+TGG 0.622374 7.3:-967398 MS.gene050646:CDS
CTTTGATTGAAGTAGCGGAA+AGG 0.624248 7.3:+969228 None:intergenic
AAGATTGAGGCATGTTAATG+CGG 0.624319 7.3:-968955 MS.gene050646:CDS
ATCTGAACGTTGTGTTGCCG+AGG 0.627853 7.3:-968775 MS.gene050646:CDS
TCTGGGTTAAATAAGGCTGA+AGG 0.629889 7.3:-967736 MS.gene050646:CDS
TAGCGGAAAGGATCGGAGAA+GGG 0.633286 7.3:+969240 None:intergenic
GGAGAAGAAGACGAACGGAG+GGG 0.638795 7.3:+969087 None:intergenic
CTATTCGTGAAGCACTTGAA+CGG 0.638863 7.3:-969284 MS.gene050646:CDS
AACTGTTGGAGAAGGCAAAG+TGG 0.640041 7.3:-967626 MS.gene050646:CDS
ACGGAGAAGAAGACGAACGG+AGG 0.640073 7.3:+969085 None:intergenic
TCGCGGAATTATCATCGTTG+AGG 0.653764 7.3:+969141 None:intergenic
GTGGTGCAGCGACGAAAGCG+GGG 0.661133 7.3:-969025 MS.gene050646:CDS
GCGGGATGGAGACTCTTCTG+GGG 0.663980 7.3:-967686 MS.gene050646:CDS
TTCCGGCGAACAACATATCG+CGG 0.671544 7.3:+969124 None:intergenic
GGTAAATGATGAAATGATGG+AGG 0.678864 7.3:-967536 MS.gene050646:CDS
ACGCGTGTAGGGATATGAGT+GGG 0.681533 7.3:-968980 MS.gene050646:CDS
TCACGTGGGTTAAAATGTGG+AGG 0.682462 7.3:-966899 MS.gene050646:CDS
CAGACGGAGAAGAAGACGAA+CGG 0.682607 7.3:+969082 None:intergenic
GACGCGTGTAGGGATATGAG+TGG 0.698844 7.3:-968981 MS.gene050646:CDS
TTCTCTTGAGCATAAAACAG+TGG 0.706732 7.3:-967365 MS.gene050646:CDS
GAAGATGTTATTGATGACGA+GGG 0.732172 7.3:-967799 MS.gene050646:CDS
TAGGAAGCTTGAGAAAACGG+CGG 0.738753 7.3:-968895 MS.gene050646:CDS
AGACTGAACTCCAGTCACGT+GGG 0.739643 7.3:-966913 MS.gene050646:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATTTGATTATAG+GGG - chr7.3:967811-967830 MS.gene050646:CDS 10.0%
!!! ACAAATTGATTTTATAAATT+TGG - chr7.3:967596-967615 MS.gene050646:CDS 10.0%
!!! ATATTTTTAAAACATAATGA+GGG - chr7.3:968877-968896 MS.gene050646:CDS 10.0%
!!! TATATTTTTAAAACATAATG+AGG - chr7.3:968876-968895 MS.gene050646:CDS 10.0%
!! TATGGTTTAAATTATTATGA+AGG - chr7.3:967527-967546 MS.gene050646:CDS 15.0%
!! TTAAAAACATCAAAATTAAG+AGG + chr7.3:968836-968855 None:intergenic 15.0%
!! GATTTAATATGGTTTATGTT+TGG - chr7.3:967642-967661 MS.gene050646:CDS 20.0%
!! TTAAATTATTATGAAGGCAA+TGG - chr7.3:967533-967552 MS.gene050646:CDS 20.0%
!!! TGTATTTTTCAATTGTTGTA+TGG - chr7.3:967509-967528 MS.gene050646:CDS 20.0%
!!! TTTAGCAAACTCTTTTTTTA+AGG - chr7.3:968983-969002 MS.gene050646:CDS 20.0%
! AAAATGTCATAACTCATAAG+CGG - chr7.3:968085-968104 MS.gene050646:intron 25.0%
! AACAAATAGTACTTGATTAG+TGG + chr7.3:969128-969147 None:intergenic 25.0%
! AACACTAATTAAAGAATCCA+AGG + chr7.3:968642-968661 None:intergenic 25.0%
! ACAGATGAAGAAGAATAATA+AGG - chr7.3:967272-967291 MS.gene050646:intron 25.0%
! ATAGAACCAAACATAGATTT+AGG - chr7.3:967841-967860 MS.gene050646:CDS 25.0%
! ATCATTTCATCATTTACCAT+GGG + chr7.3:968590-968609 None:intergenic 25.0%
! CACATCCAAATTTCATATTA+AGG + chr7.3:968187-968206 None:intergenic 25.0%
! CAGATGAAGAAGAATAATAA+GGG - chr7.3:967273-967292 MS.gene050646:intron 25.0%
! TTGGATGTGTTTATTTGTTT+GGG - chr7.3:968198-968217 MS.gene050646:intron 25.0%
! TTTGGATGTGTTTATTTGTT+TGG - chr7.3:968197-968216 MS.gene050646:intron 25.0%
!! ATTGTTGGATTTTATGGATT+TGG - chr7.3:968224-968243 MS.gene050646:intron 25.0%
!! TAAGTTTGATGTATTTTCCA+TGG - chr7.3:969155-969174 MS.gene050646:CDS 25.0%
!! TCAGTTCTTTAGTTTATGTT+TGG - chr7.3:967687-967706 MS.gene050646:CDS 25.0%
!!! AATTTGGTTTTGATTGAAAG+TGG - chr7.3:967612-967631 MS.gene050646:CDS 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr7.3:968126-968145 None:intergenic 25.0%
!!! ATTTGGTTTTGATTGAAAGT+GGG - chr7.3:967613-967632 MS.gene050646:CDS 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG + chr7.3:968125-968144 None:intergenic 25.0%
AAAACTAAGACGAACCAAAA+TGG + chr7.3:967484-967503 None:intergenic 30.0%
AAGAAGAATAATAAGGGCAA+GGG - chr7.3:967279-967298 MS.gene050646:CDS 30.0%
ATCAGAAGAAGTTGAAGATA+TGG - chr7.3:967454-967473 MS.gene050646:CDS 30.0%
CAGGACCTTAATATGAAATT+TGG - chr7.3:968179-968198 MS.gene050646:intron 30.0%
CATCATTTCATCATTTACCA+TGG + chr7.3:968591-968610 None:intergenic 30.0%
CATGGTAAATGATGAAATGA+TGG - chr7.3:968589-968608 MS.gene050646:intron 30.0%
CGAATAGATTGAACATTCTA+TGG + chr7.3:966831-966850 None:intergenic 30.0%
CGATGATTATCATGATAACA+AGG - chr7.3:968667-968686 MS.gene050646:intron 30.0%
GAAGTATGTTGCTAAGTATA+GGG - chr7.3:967326-967345 MS.gene050646:CDS 30.0%
GCTATAGAAATAGCTTATGA+AGG + chr7.3:967965-967984 None:intergenic 30.0%
TAAATAGTCAGAATGAGTCT+GGG - chr7.3:968375-968394 MS.gene050646:intron 30.0%
TAGATTTAGGTGTACAAACA+TGG - chr7.3:967854-967873 MS.gene050646:intron 30.0%
TATCATGATAACAAGGTTGA+TGG - chr7.3:968674-968693 MS.gene050646:intron 30.0%
TATTTGTTTGGGTCAATTGT+TGG - chr7.3:968209-968228 MS.gene050646:intron 30.0%
TGTACACCTAAATCTATGTT+TGG + chr7.3:967850-967869 None:intergenic 30.0%
TTAAATAGTCAGAATGAGTC+TGG - chr7.3:968374-968393 MS.gene050646:intron 30.0%
! AGAAGTATGTTGCTAAGTAT+AGG - chr7.3:967325-967344 MS.gene050646:CDS 30.0%
! TTGATGTATTTTCCATGGAT+CGG - chr7.3:969160-969179 MS.gene050646:CDS 30.0%
! TTTCTTTGGAAGTTTATCCA+GGG + chr7.3:969302-969321 None:intergenic 30.0%
!!! ATTTTGGTTCGTCTTAGTTT+TGG - chr7.3:967483-967502 MS.gene050646:CDS 30.0%
!!! TGTTGTTGTTTGCTTTTTCT+AGG - chr7.3:968264-968283 MS.gene050646:intron 30.0%
!!! TTGTTTGCTTTTTCTAGGAT+GGG - chr7.3:968269-968288 MS.gene050646:intron 30.0%
AAGATTGAGGCATGTTAATG+CGG - chr7.3:967173-967192 MS.gene050646:intron 35.0%
ACCATCAATTTCCATGTCAT+TGG + chr7.3:968744-968763 None:intergenic 35.0%
ACGATCTTTGATTGAAGTAG+CGG + chr7.3:966908-966927 None:intergenic 35.0%
AGAAGGGAATAATAGGGTTA+GGG + chr7.3:966875-966894 None:intergenic 35.0%
CTCAATACTTTCAGTACTCT+GGG + chr7.3:968543-968562 None:intergenic 35.0%
GAAGAAGAAAAGGAAACTGT+TGG - chr7.3:968488-968507 MS.gene050646:intron 35.0%
GAAGAAGAATAATAAGGGCA+AGG - chr7.3:967278-967297 MS.gene050646:CDS 35.0%
GAATGAGTCTGGGTTAAATA+AGG - chr7.3:968385-968404 MS.gene050646:intron 35.0%
GGTAAATGATGAAATGATGG+AGG - chr7.3:968592-968611 MS.gene050646:intron 35.0%
TATTAAGGTCCTGTTAGCAT+TGG + chr7.3:968172-968191 None:intergenic 35.0%
TCAAATAAGCCAATGCTAAC+AGG - chr7.3:968160-968179 MS.gene050646:intron 35.0%
TCCAATGACATGGAAATTGA+TGG - chr7.3:968740-968759 MS.gene050646:CDS 35.0%
TTAGTGTGTGTTTGCTTATG+CGG - chr7.3:967569-967588 MS.gene050646:CDS 35.0%
TTCTCTTGAGCATAAAACAG+TGG - chr7.3:968763-968782 MS.gene050646:CDS 35.0%
TTCTTTGCTAGCAGTTTCTT+TGG + chr7.3:969316-969335 None:intergenic 35.0%
! GAAGATATGGTAAGCCATTT+TGG - chr7.3:967467-967486 MS.gene050646:CDS 35.0%
! GGGTCAATTGTTGGATTTTA+TGG - chr7.3:968218-968237 MS.gene050646:intron 35.0%
! GTTTCTTTGGAAGTTTATCC+AGG + chr7.3:969303-969322 None:intergenic 35.0%
! TTCTTTGGAAGTTTATCCAG+GGG + chr7.3:969301-969320 None:intergenic 35.0%
!! GAAGATGTTATTGATGACGA+GGG - chr7.3:968329-968348 MS.gene050646:intron 35.0%
!!! GTTGTTTGCTTTTTCTAGGA+TGG - chr7.3:968268-968287 MS.gene050646:intron 35.0%
!!! TCTTTTAAAATCAACTCCCC+TGG - chr7.3:969282-969301 MS.gene050646:CDS 35.0%
!!! TGTTTGCTTTTTCTAGGATG+GGG - chr7.3:968270-968289 MS.gene050646:intron 35.0%
AAATCTTCGCCTATATCGGA+AGG - chr7.3:967417-967436 MS.gene050646:CDS 40.0%
AACTTCTTCTGATCACGAGA+AGG + chr7.3:967447-967466 None:intergenic 40.0%
AATTATCATCGTTGAGGTGG+CGG + chr7.3:966984-967003 None:intergenic 40.0%
ACAAACATGGCACCAAACAT+AGG - chr7.3:967867-967886 MS.gene050646:intron 40.0%
ACAGACCCTAAACCTATGTT+TGG + chr7.3:967882-967901 None:intergenic 40.0%
ATATGAGTGGGAGAAGATTG+AGG - chr7.3:967160-967179 MS.gene050646:intron 40.0%
ATGGCACCAAACATAGGTTT+AGG - chr7.3:967873-967892 MS.gene050646:intron 40.0%
CCTCAATACTTTCAGTACTC+TGG + chr7.3:968544-968563 None:intergenic 40.0%
GAAAAGGAAACTGTTGGAGA+AGG - chr7.3:968494-968513 MS.gene050646:intron 40.0%
GAATAATTTCGACGCGTGTA+GGG - chr7.3:967137-967156 MS.gene050646:intron 40.0%
GAGAAGGGAATAATAGGGTT+AGG + chr7.3:966876-966895 None:intergenic 40.0%
GAGTGGATCTGAAGAAGAAA+AGG - chr7.3:968478-968497 MS.gene050646:intron 40.0%
GATCGGAGAAGGGAATAATA+GGG + chr7.3:966881-966900 None:intergenic 40.0%
GCGTAAATCTTCGCCTATAT+CGG - chr7.3:967413-967432 MS.gene050646:CDS 40.0%
GGATAGGAAGCTTGAGAAAA+CGG - chr7.3:967230-967249 MS.gene050646:intron 40.0%
TAATTCAGCTGCAGAACTTG+AGG - chr7.3:968853-968872 MS.gene050646:CDS 40.0%
TCTGGGTTAAATAAGGCTGA+AGG - chr7.3:968392-968411 MS.gene050646:intron 40.0%
TGAAGTTGTGTCCAATGACA+TGG - chr7.3:968730-968749 MS.gene050646:CDS 40.0%
TGGCACCAAACATAGGTTTA+GGG - chr7.3:967874-967893 MS.gene050646:intron 40.0%
TTCAGAGCTCACAACATTTG+AGG + chr7.3:968714-968733 None:intergenic 40.0%
! ACATAGGTTTAGGGTCTGTT+TGG - chr7.3:967883-967902 MS.gene050646:intron 40.0%
! ATTGAAGTAGCGGAAAGGAT+CGG + chr7.3:966898-966917 None:intergenic 40.0%
! CATAGGTTTAGGGTCTGTTT+GGG - chr7.3:967884-967903 MS.gene050646:intron 40.0%
! CTATTCGTGAAGCACTTGAA+CGG - chr7.3:966844-966863 MS.gene050646:CDS 40.0%
! CTTTGATTGAAGTAGCGGAA+AGG + chr7.3:966903-966922 None:intergenic 40.0%
! GTGGGTCGGTTGATTTAATA+TGG - chr7.3:967631-967650 MS.gene050646:CDS 40.0%
!! ATTCTGTGACTGGTTTCAAG+CGG - chr7.3:968423-968442 MS.gene050646:intron 40.0%
!! CCAGAGTACTGAAAGTATTG+AGG - chr7.3:968541-968560 MS.gene050646:intron 40.0%
!! CGAAGATGTTATTGATGACG+AGG - chr7.3:968328-968347 MS.gene050646:intron 40.0%
!!! GGTTTTGATTGAAAGTGGGT+CGG - chr7.3:967617-967636 MS.gene050646:CDS 40.0%
!!! TTTTTCTAGGATGGGGAAGA+GGG - chr7.3:968277-968296 MS.gene050646:intron 40.0%
AAAGGCGGTAAAGGAGGATT+CGG - chr7.3:967069-967088 MS.gene050646:intron 45.0%
AACTGTTGGAGAAGGCAAAG+TGG - chr7.3:968502-968521 MS.gene050646:intron 45.0%
AATAAGGGCAAGGGCAAGAA+TGG - chr7.3:967288-967307 MS.gene050646:CDS 45.0%
ATCGGATCTTCACAGGTTCT+TGG - chr7.3:969178-969197 MS.gene050646:CDS 45.0%
ATCTTCACAGGTTCTTGGCT+TGG - chr7.3:969183-969202 MS.gene050646:CDS 45.0%
ATTATCATCGTTGAGGTGGC+GGG + chr7.3:966983-967002 None:intergenic 45.0%
CGAATAATTTCGACGCGTGT+AGG - chr7.3:967136-967155 MS.gene050646:intron 45.0%
CGGAATTATCATCGTTGAGG+TGG + chr7.3:966987-967006 None:intergenic 45.0%
GAAGGAGAACCTTCCGATAT+AGG + chr7.3:967429-967448 None:intergenic 45.0%
GAATCCAAGGTCTCTGAACA+AGG + chr7.3:968629-968648 None:intergenic 45.0%
GGATCGGAGAAGGGAATAAT+AGG + chr7.3:966882-966901 None:intergenic 45.0%
TAGGAAGCTTGAGAAAACGG+CGG - chr7.3:967233-967252 MS.gene050646:intron 45.0%
TCGCGGAATTATCATCGTTG+AGG + chr7.3:966990-967009 None:intergenic 45.0%
TGTTAATGCGGAGAAGAGGT+TGG - chr7.3:967185-967204 MS.gene050646:intron 45.0%
TTAAGAGGATCGTCCTTTGC+TGG + chr7.3:968821-968840 None:intergenic 45.0%
! CAGTCACGTGGGTTAAAATG+TGG - chr7.3:969226-969245 MS.gene050646:CDS 45.0%
! GATCGTCTTTTCCATCTCAC+CGG - chr7.3:966922-966941 MS.gene050646:CDS 45.0%
! TCACGTGGGTTAAAATGTGG+AGG - chr7.3:969229-969248 MS.gene050646:CDS 45.0%
!! AAAATGTGGAGGTACCTTGC+AGG - chr7.3:969240-969259 MS.gene050646:CDS 45.0%
!! CACATTTTAACCCACGTGAC+TGG + chr7.3:969228-969247 None:intergenic 45.0%
!! GATAACAAGGTTGATGGCAC+TGG - chr7.3:968680-968699 MS.gene050646:CDS 45.0%
!! TTCTGTGACTGGTTTCAAGC+GGG - chr7.3:968424-968443 MS.gene050646:intron 45.0%
!! TTGGTGTTGGATTGGGATTC+CGG + chr7.3:966944-966963 None:intergenic 45.0%
!!! CTTTTTCTAGGATGGGGAAG+AGG - chr7.3:968276-968295 MS.gene050646:intron 45.0%
!! ATATATATATATTTGATTAT+AGG - chr7.3:967809-967828 MS.gene050646:CDS 5.0%
!! TATATATATATTTGATTATA+GGG - chr7.3:967810-967829 MS.gene050646:CDS 5.0%
AAGACTGAACTCCAGTCACG+TGG - chr7.3:969214-969233 MS.gene050646:CDS 50.0%
ACCTGTGAAGATCCGATCCA+TGG + chr7.3:969175-969194 None:intergenic 50.0%
ACGCGTGTAGGGATATGAGT+GGG - chr7.3:967148-967167 MS.gene050646:intron 50.0%
AGACTGAACTCCAGTCACGT+GGG - chr7.3:969215-969234 MS.gene050646:CDS 50.0%
ATATGTTGTTCGCCGGAAGG+TGG - chr7.3:967009-967028 MS.gene050646:intron 50.0%
ATCTGAACGTTGTGTTGCCG+AGG - chr7.3:967353-967372 MS.gene050646:CDS 50.0%
CAGACGGAGAAGAAGACGAA+CGG + chr7.3:967049-967068 None:intergenic 50.0%
CGTCTTCTTCTCCGTCTGAA+AGG - chr7.3:967051-967070 MS.gene050646:intron 50.0%
CTCCTTTACCGCCTTTCAGA+CGG + chr7.3:967065-967084 None:intergenic 50.0%
CTGAACAGACTCAGCAACCT+CGG + chr7.3:967373-967392 None:intergenic 50.0%
CTTCTTCTCCGTCTGAAAGG+CGG - chr7.3:967054-967073 MS.gene050646:intron 50.0%
GAAGAAAGCTTGCCAAGCAC+TGG - chr7.3:968791-968810 MS.gene050646:CDS 50.0%
GGCATGTTAATGCGGAGAAG+AGG - chr7.3:967181-967200 MS.gene050646:intron 50.0%
GGGAACATGTTTCCACCTTC+CGG + chr7.3:967024-967043 None:intergenic 50.0%
TAATGCGGAGAAGAGGTTGG+AGG - chr7.3:967188-967207 MS.gene050646:intron 50.0%
TAGCGGAAAGGATCGGAGAA+GGG + chr7.3:966891-966910 None:intergenic 50.0%
TCCATGGATCGGATCTTCAC+AGG - chr7.3:969171-969190 MS.gene050646:CDS 50.0%
TTCCGCGATATGTTGTTCGC+CGG - chr7.3:967002-967021 MS.gene050646:intron 50.0%
TTCCGGCGAACAACATATCG+CGG + chr7.3:967007-967026 None:intergenic 50.0%
TTTGCTGGAACACCAGTGCT+TGG + chr7.3:968806-968825 None:intergenic 50.0%
! GAGTATTGCTGCTGAACCCA+TGG - chr7.3:968571-968590 MS.gene050646:intron 50.0%
! GGCAGTTCTGATTCTGTGAC+TGG - chr7.3:968413-968432 MS.gene050646:intron 50.0%
! GGGCAAGAATGGTGATGTTG+AGG - chr7.3:967299-967318 MS.gene050646:CDS 50.0%
! TGTGCCTTGTTCAGAGACCT+TGG - chr7.3:968622-968641 MS.gene050646:intron 50.0%
!! AAGCACTGGTGTTCCAGCAA+AGG - chr7.3:968805-968824 MS.gene050646:CDS 50.0%
AAGCGGGATGGAGACTCTTC+TGG - chr7.3:968440-968459 MS.gene050646:intron 55.0%
ACGGAGAAGAAGACGAACGG+AGG + chr7.3:967046-967065 None:intergenic 55.0%
AGCGGGATGGAGACTCTTCT+GGG - chr7.3:968441-968460 MS.gene050646:intron 55.0%
AGGTTGGAGGAGTGGAGAGA+AGG - chr7.3:967201-967220 MS.gene050646:intron 55.0%
CGAGGTTGCTGAGTCTGTTC+AGG - chr7.3:967371-967390 MS.gene050646:CDS 55.0%
CGGAGAAGAAGACGAACGGA+GGG + chr7.3:967045-967064 None:intergenic 55.0%
CGTCTGAAAGGCGGTAAAGG+AGG - chr7.3:967063-967082 MS.gene050646:intron 55.0%
CTCCGTCTGAAAGGCGGTAA+AGG - chr7.3:967060-967079 MS.gene050646:intron 55.0%
GAAGCTTGAGAAAACGGCGG+AGG - chr7.3:967236-967255 MS.gene050646:intron 55.0%
GACGCGTGTAGGGATATGAG+TGG - chr7.3:967147-967166 MS.gene050646:intron 55.0%
GCGATATGTTGTTCGCCGGA+AGG - chr7.3:967006-967025 MS.gene050646:intron 55.0%
GGAGAAGAAGACGAACGGAG+GGG + chr7.3:967044-967063 None:intergenic 55.0%
GGAGAGAAGGGGAAGAGGAT+AGG - chr7.3:967214-967233 MS.gene050646:intron 55.0%
GGATTCGGATCGTTGCTTCG+TGG - chr7.3:967084-967103 MS.gene050646:intron 55.0%
GGATTGGGATTCCGGTGAGA+TGG + chr7.3:966936-966955 None:intergenic 55.0%
GGTTGGAGGAGTGGAGAGAA+GGG - chr7.3:967202-967221 MS.gene050646:intron 55.0%
GTTGGAGGAGTGGAGAGAAG+GGG - chr7.3:967203-967222 MS.gene050646:intron 55.0%
! GTAGCGGAAAGGATCGGAGA+AGG + chr7.3:966892-966911 None:intergenic 55.0%
!! ACGAGGCGTTGGTGTTGGAT+TGG + chr7.3:966952-966971 None:intergenic 55.0%
!! CGAGGCGTTGGTGTTGGATT+GGG + chr7.3:966951-966970 None:intergenic 55.0%
!! GATGGAGACTCTTCTGGGGT+TGG - chr7.3:968446-968465 MS.gene050646:intron 55.0%
!! GTGACTGGTTTCAAGCGGGA+TGG - chr7.3:968428-968447 MS.gene050646:intron 55.0%
CAACACCAACGCCTCGTCAC+CGG - chr7.3:966955-966974 MS.gene050646:intron 60.0%
CCTTGCAGCACGTTCCTGCA+AGG + chr7.3:969257-969276 None:intergenic 60.0%
CCTTGCAGGAACGTGCTGCA+AGG - chr7.3:969254-969273 MS.gene050646:CDS 60.0%
CGGAGAAGAGGTTGGAGGAG+TGG - chr7.3:967193-967212 MS.gene050646:intron 60.0%
GCGGGATGGAGACTCTTCTG+GGG - chr7.3:968442-968461 MS.gene050646:intron 60.0%
GGAGTGGAGAGAAGGGGAAG+AGG - chr7.3:967209-967228 MS.gene050646:intron 60.0%
TCGTGGTGCAGCGACGAAAG+CGG - chr7.3:967101-967120 MS.gene050646:intron 60.0%
!! ATCGTTGAGGTGGCGGGAAC+CGG + chr7.3:966977-966996 None:intergenic 60.0%
!! GGGGTTGGTTCGTGTGAGAG+TGG - chr7.3:968461-968480 MS.gene050646:intron 60.0%
CGTGGTGCAGCGACGAAAGC+GGG - chr7.3:967102-967121 MS.gene050646:intron 65.0%
GTGGTGCAGCGACGAAAGCG+GGG - chr7.3:967103-967122 MS.gene050646:intron 65.0%
!! CGGTGACGAGGCGTTGGTGT+TGG + chr7.3:966957-966976 None:intergenic 65.0%
GGGAACCGGTGACGAGGCGT+TGG + chr7.3:966963-966982 None:intergenic 70.0%
!! GGTGGCGGGAACCGGTGACG+AGG + chr7.3:966969-966988 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 966811 969339 966811 ID=MS.gene050646
chr7.3 mRNA 966811 969339 966811 ID=MS.gene050646.t1;Parent=MS.gene050646
chr7.3 exon 968675 969339 968675 ID=MS.gene050646.t1.exon1;Parent=MS.gene050646.t1
chr7.3 CDS 968675 969339 968675 ID=cds.MS.gene050646.t1;Parent=MS.gene050646.t1
chr7.3 exon 967276 967864 967276 ID=MS.gene050646.t1.exon2;Parent=MS.gene050646.t1
chr7.3 CDS 967276 967864 967276 ID=cds.MS.gene050646.t1;Parent=MS.gene050646.t1
chr7.3 exon 966811 966957 966811 ID=MS.gene050646.t1.exon3;Parent=MS.gene050646.t1
chr7.3 CDS 966811 966957 966811 ID=cds.MS.gene050646.t1;Parent=MS.gene050646.t1
Gene Sequence

>MS.gene050646

ATGGAACAAGAAAAGAGCCATAGAATGTTCAATCTATTCGTGAAGCACTTGAACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTCCGCTACTTCAATCAAAGATCGTCTTTTCCATCTCACCGGAATCCCAATCCAACACCAACGCCTCGTCACCGGTTCCCGCCACCTCAACGATGATAATTCCGCGATATGTTGTTCGCCGGAAGGTGGAAACATGTTCCCCTCCGTTCGTCTTCTTCTCCGTCTGAAAGGCGGTAAAGGAGGATTCGGATCGTTGCTTCGTGGTGCAGCGACGAAAGCGGGGCAGAAGAAGACGAATAATTTCGACGCGTGTAGGGATATGAGTGGGAGAAGATTGAGGCATGTTAATGCGGAGAAGAGGTTGGAGGAGTGGAGAGAAGGGGAAGAGGATAGGAAGCTTGAGAAAACGGCGGAGGAGTTTTTGAAGAAACAGATGAAGAAGAATAATAAGGGCAAGGGCAAGAATGGTGATGTTGAGGCTCAGAAGTATGTTGCTAAGTATAGGGAGCAATCTGAACGTTGTGTTGCCGAGGTTGCTGAGTCTGTTCAGGAATCGATAAGATATTCTAAGCGTAAATCTTCGCCTATATCGGAAGGTTCTCCTTCTCGTGATCAGAAGAAGTTGAAGATATGGTAAGCCATTTTGGTTCGTCTTAGTTTTGGTTTTGTATTTTTCAATTGTTGTATGGTTTAAATTATTATGAAGGCAATGGTTAACTAAATAGTTTAGTGTGTGTTTGCTTATGCGGTCACACAAATTGATTTTATAAATTTGGTTTTGATTGAAAGTGGGTCGGTTGATTTAATATGGTTTATGTTTGGATACACAAAAAAGTTAGTTATATCAGTTCTTTAGTTTATGTTTGGATAGTTTGTGTCATAATTGCTTTTTTTGTGTGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGATTATAGGGGAACAATTATAGAACCAAACATAGATTTAGGTGTACAAACATGGCACCAAACATAGGTTTAGGGTCTGTTTGGGTGAACAGCTTATTTGCAGCTTATAGCACAAGCTCTTATCAGCGCTTTAATATAAGCCTTCATAAGCTATTTCTATAGCAAAAGATAAAATTTAGTTAAATCATTTTTTTATATGCTATAAGTTGTTTTCATAAGCTATCTTGAATAACTTATGAACATAAGCTCAAAAACGCTTATGAAAAATGTCATAACTCATAAGCGGTTTTCATAAGTTCTCCCAAACAATCTCACAAAACTTATGTCAGTAGATAAGCTCAAATAAGCCAATGCTAACAGGACCTTAATATGAAATTTGGATGTGTTTATTTGTTTGGGTCAATTGTTGGATTTTATGGATTTGGTATTTATATTTGTGTTGTGTTGTTGTTTGCTTTTTCTAGGATGGGGAAGAGGGCATTGAATGAAAGTGATGATGATTCTGACGAAGATGTTATTGATGACGAGGGAGAAACTGAGAAATCTGTTTTGTTAAATAGTCAGAATGAGTCTGGGTTAAATAAGGCTGAAGGCAGTTCTGATTCTGTGACTGGTTTCAAGCGGGATGGAGACTCTTCTGGGGTTGGTTCGTGTGAGAGTGGATCTGAAGAAGAAAAGGAAACTGTTGGAGAAGGCAAAGTGGAAATTGTTGAAAGATCCCAGAGTACTGAAAGTATTGAGGCAAAACTGAGTATTGCTGCTGAACCCATGGTAAATGATGAAATGATGGAGGCTAACGCTGTGCCTTGTTCAGAGACCTTGGATTCTTTAATTAGTGTTCAAGACGATGATTATCATGATAACAAGGTTGATGGCACTGGTGCTCAAGCCTCAAATGTTGTGAGCTCTGAAGTTGTGTCCAATGACATGGAAATTGATGGTTCTCTTGAGCATAAAACAGTGGTCATTGAAGAAAGCTTGCCAAGCACTGGTGTTCCAGCAAAGGACGATCCTCTTAATTTTGATGTTTTTAATTCAGCTGCAGAACTTGAGGTATATTTTTAAAACATAATGAGGGCTTATGTAGTGTTCTACACTTTGATATGTTTATGTATTTCATTTAATTGATGTATACGATAAATTTTAAGCAAAATGCAATACTTTAGCAAACTCTTTTTTTAAGGAATCTATCGATATTTATATTTTTTCTAACTTAATGAATAGAATGTTATGTGACAAACTGTAGTTTTAGACATGCATGATAAGATATAAGAAGATAAGTCATCTCATTTATAGACTAGATCCACTAATCAAGTACTATTTGTTAGTCTCTTAAGTTTGATGTATTTTCCATGGATCGGATCTTCACAGGTTCTTGGCTTGGAGAATTTGAAGACTGAACTCCAGTCACGTGGGTTAAAATGTGGAGGTACCTTGCAGGAACGTGCTGCAAGGCTTTTTCTTTTAAAATCAACTCCCCTGGATAAACTTCCAAAGAAACTGCTAGCAAAGAAATGA

Protein sequence

>MS.gene050646.t1

MEQEKSHRMFNLFVKHLNGKTLTLLFPSPILSATSIKDRLFHLTGIPIQHQRLVTGSRHLNDDNSAICCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWREGEEDRKLEKTAEEFLKKQMKKNNKGKGKNGDVEAQKYVAKYREQSERCVAEVAESVQESIRYSKRKSSPISEGSPSRDQKKLKIWMGKRALNESDDDSDEDVIDDEGETEKSVLLNSQNESGLNKAEGSSDSVTGFKRDGDSSGVGSCESGSEEEKETVGEGKVEIVERSQSTESIEAKLSIAAEPMVNDEMMEANAVPCSETLDSLISVQDDDYHDNKVDGTGAQASNVVSSEVVSNDMEIDGSLEHKTVVIEESLPSTGVPAKDDPLNFDVFNSAAELEVLGLENLKTELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK