AlfalfaGEDB | MS.gene071543

M. sativa cultivar XinJiangDaYe / MS.gene071543

KEGG: -
GO: -
PFAM: PF10250.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071543.t1	XP_003608700.2	96	423	13	1	1	419	1	423	1.10E-235	825.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071543.t1	Q8LPF8	74.9	399	93	2	25	419	42	437	9.5e-175	614.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071543.t1	G7JIV4	96.0	423	13	1	1	419	1	423	8.2e-236	825.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene071543	MS.gene50839	PPI
MS.gene071543	MS.gene058758	PPI
MS.gene071543	MS.gene009264	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071543.t1	MTR_4g100810	95.981	423	13	1	1	419	1	423	0.0	838
MS.gene071543.t1	MTR_5g012770	76.341	410	70	4	22	419	34	428	0.0	630
MS.gene071543.t1	MTR_3g115220	59.249	346	135	3	79	419	82	426	2.32e-145	426
MS.gene071543.t1	MTR_5g099010	55.435	368	146	4	68	419	68	433	8.90e-140	412
MS.gene071543.t1	MTR_1g031590	41.287	373	183	9	74	419	115	478	3.56e-89	280
MS.gene071543.t1	MTR_4g084570	38.756	418	224	12	28	419	68	479	1.30e-84	269
MS.gene071543.t1	MTR_5g064620	41.761	352	189	7	78	419	84	429	3.71e-81	259
MS.gene071543.t1	MTR_4g019210	42.857	357	180	10	76	419	202	547	5.35e-81	262
MS.gene071543.t1	MTR_3g005340	41.457	357	188	7	81	419	123	476	5.79e-81	260
MS.gene071543.t1	MTR_5g042200	43.452	336	166	9	99	419	77	403	1.64e-80	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071543.t1	AT4G16650	74.257	404	97	2	20	419	37	437	0.0	603
MS.gene071543.t1	AT4G16650	74.257	404	97	2	20	419	37	437	0.0	603
MS.gene071543.t1	AT1G20550	50.000	410	188	6	25	419	16	423	8.78e-140	411
MS.gene071543.t1	AT4G38390	56.232	345	146	2	80	419	95	439	4.85e-138	406
MS.gene071543.t1	AT1G76270	56.069	346	145	3	79	419	77	420	5.68e-137	404
MS.gene071543.t1	AT1G14970	44.713	331	165	7	107	419	8	338	2.81e-88	274
MS.gene071543.t1	AT1G14970	44.713	331	165	7	107	419	34	364	7.03e-88	274
MS.gene071543.t1	AT2G01480	44.242	330	166	7	108	419	154	483	7.88e-88	276
MS.gene071543.t1	AT2G01480	44.242	330	166	7	108	419	154	483	3.81e-87	276
MS.gene071543.t1	AT1G14970	44.713	331	165	7	107	419	154	484	2.15e-86	274

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Find 91 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTTCAATTCTTCCT+CGG	0.501153	8.3:-20319689	None:intergenic
AAACCGCAAATGACCGACCA+TGG	0.565822	8.3:-20315690	None:intergenic
AAAGAATTATGATCCAACTC+AGG	0.620218	8.3:-20317938	None:intergenic
AAATGGGTGTGGTGAAGTCG+TGG	0.645174	8.3:+20315607	None:intergenic
AACATGGCCAGGATTCTTGC+TGG	0.456728	8.3:+20319793	MS.gene071543:CDS
AAGATCTCTGAGAGGCTGCA+TGG	0.577808	8.3:-20319635	None:intergenic
AAGATGAGAAACAACGTGAC+CGG	0.587152	8.3:-20315748	None:intergenic
ACAAAACCAATACGACAACT+TGG	0.536194	8.3:+20318583	MS.gene071543:CDS
ACAACAACGGTAACATGGCC+AGG	0.529185	8.3:+20319782	MS.gene071543:CDS
ACATACCTGTATGTTGCATC+GGG	0.449719	8.3:+20319589	MS.gene071543:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGTTTCAATTCTTCCT+CGG	-	chr8.3:20319692-20319711	None:intergenic	30.0%
AAAGAATTATGATCCAACTC+AGG	-	chr8.3:20317941-20317960	None:intergenic	30.0%
AAATCCTGTATTATTGCAAG+AGG	-	chr8.3:20319478-20319497	None:intergenic	30.0%
ACTGAGTTTAGATCATGTTA+AGG	-	chr8.3:20316864-20316883	None:intergenic	30.0%
ATCTCCTTTGTATAGATGTT+GGG	-	chr8.3:20319664-20319683	None:intergenic	30.0%
ATTACCTCTTGCAATAATAC+AGG	+	chr8.3:20319471-20319490	MS.gene071543:intron	30.0%
CCAATTAACATCGAAAATGT+TGG	-	chr8.3:20318129-20318148	None:intergenic	30.0%
CTGAGTTTAGATCATGTTAA+GGG	-	chr8.3:20316863-20316882	None:intergenic	30.0%
GAAGTCACTGTATTACAAAA+AGG	-	chr8.3:20318105-20318124	None:intergenic	30.0%
GATAAAGGAGTTGTGAAAAT+GGG	-	chr8.3:20318825-20318844	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	20315609	20319821	20315609	ID=MS.gene071543
chr8.3	mRNA	20315609	20319821	20315609	ID=MS.gene071543.t1;Parent=MS.gene071543
chr8.3	exon	20315609	20315818	20315609	ID=MS.gene071543.t1.exon1;Parent=MS.gene071543.t1
chr8.3	CDS	20315609	20315818	20315609	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20316361	20316451	20316361	ID=MS.gene071543.t1.exon2;Parent=MS.gene071543.t1
chr8.3	CDS	20316361	20316451	20316361	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20317178	20317254	20317178	ID=MS.gene071543.t1.exon3;Parent=MS.gene071543.t1
chr8.3	CDS	20317178	20317254	20317178	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20317887	20317975	20317887	ID=MS.gene071543.t1.exon4;Parent=MS.gene071543.t1
chr8.3	CDS	20317887	20317975	20317887	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20318118	20318307	20318118	ID=MS.gene071543.t1.exon5;Parent=MS.gene071543.t1
chr8.3	CDS	20318118	20318307	20318118	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20318484	20318665	20318484	ID=MS.gene071543.t1.exon6;Parent=MS.gene071543.t1
chr8.3	CDS	20318484	20318665	20318484	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20318988	20319078	20318988	ID=MS.gene071543.t1.exon7;Parent=MS.gene071543.t1
chr8.3	CDS	20318988	20319078	20318988	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1
chr8.3	exon	20319493	20319821	20319493	ID=MS.gene071543.t1.exon8;Parent=MS.gene071543.t1
chr8.3	CDS	20319493	20319821	20319493	ID=cds.MS.gene071543.t1;Parent=MS.gene071543.t1

Gene Sequence

>MS.gene071543

ATGGGTGTGGTGAAGTCGTGGTTGTTATCCACGAACCACACTCACTCTAACACCAAAAATGCCATCTGTTCGAGATCCATTCCATGGTCGGTCATTTGCGGTTTCATGCTTTTCGGGTTGGGTCTCATTTCTCTTTTAACCGGTCACGTTGTTTCTCATCTTGAATGGTACTCTCAACGATTCGTTCACCGCAGTTTCTTCTCTACACTGGTTAGTGTTCTTTTCCCTTTTATTCATTATTATGTTACATTTATTATGTTGCTTTTTGTATTGCCAATGTGGTCTACAATAGGAATAAAATAAGTGTTTGTCATATAAGTGCTTATGTATAAGGCTATAAGCTATTTATATAACATAAGAAAAATAAAGTTAAATTGTTTCCATAAAAGCTATCCTGTAGCACTTATGGAAATAAGCTGAAAATAGTTTATGAATATGTCATTAGCTGTTTACATAAGCTCTGTGAAACAGTCTCGCAAGCAAGTGTTAATGTTAGTGTTGTGTAGCAAATGTGAGTTAGAAGTCCCACGTTGCCTGGAAAAGTGGAGGTTGAACACTTTATAAGTGAGAAGACTCACAAACATAATGGCTTAAGGTTTTGGGTAAAGATGTGGTGTACAATTCACTTGTATGGTTGCTTTGGGCCCAATGTGGATGATTCTCTAGGCTCCCCTCGTGACCCAGTCGTCAGTAGATAAGTTTAAATAAGTCAATCCAAATATGTTGTGTAATTGATGTGAATTTTTTGGTAGGATGGAAATGATCATGCGCCAATTGATATTTGGGAATCACAATATTCTAAATACTACTACGGATGCAAAGAAAGGGGACGTCATTTTTATCGTAAGTTAATTCGCTAACTCTTTGTTTTGTGTTTGCTAACTAAAAATGGTACCTTGACATGTATGTATGATTTTTTGTCTAGTACAGTTCTGATTTTCATTGCACCAAAATTTGAGTCATTTTCATTTTTAGTATTAATCTAGATAGCATATTTTTTGATGATTTGCTAGCTGTTGATGTATGAAGCTTTATTTGCCTAATGGTAATTTTAGACTGATTTCAAGGAGCCTTCTAAGTCTCCATGTTGCTATGTGCTGTTTTTTTCTCTCTCTTCAGTTATAAAAAAATAATAACAATAATATCTTCACTGCTTTAGGATAGATTACATCAGTAGGTTAACTAGAGACAGATGCAAATCTGGCATGAGGTTTGTTAGATGCAGAGACATTTTTATCCACTCATTACCTCCCCTTAACATGATCTAAACTCAGTGGCTCTCTTCTATCACTTTATTTTGACTGATAAATGCTCCTTTCTAATTATATATTGATTGATGAATGCTCCTTTCTAATTATGTTATATATATATTGCTTCAAAGCCGGACTAGTGTGACCTTGTTGAAAGAGGCTTTCATGGCCCCTTCCATTACACTGCTATGAGAAAATTTAAGTGTTCCATTTTATACTTTGTTTTATTTACCCATAGACAATTTGTTAATATTGGGATCAATCATTTTAGTTTTCTACATGTCACTTTCTATCTCATTATGGTAATTGGATAATGTAGCTGCTATACGCGAGCGCATGTCAAATGGCTACTTGCTTATTGCCGCGAGCGGAGGACTGAACCAACAAAGAACTGGGGTAAGTAGGATACAATTTTTATGATATGTCATCTGTTCTCACTCACTGGTGCGATTTTTAATTACACCGTCGTGGATGGATAAGTTTAATGTATATGGAGGTCTTAGTTAGTTGCTCTCCTACTGATTGAAATCAAGAAAAGGACAGCAATGATTTTTTTCTTAGCTCGTTTGTTCCTTTTTCAGTTGTTTTTGAAGAATGCGAGGCTAGATTGATTAGGTTCTTTTCAAATTCCTGATGATATCGATAGAACTAGTCACATGTTCTTATTCATTAGTTGCTGCCTATGAAGCATGGATACGGACACCGGACATGACACGGACACTGACACGCCGACATCGATAATAATTTGATAAAATCACATAATTCAATGGAATCATATGTGTCATGTCGGTGTTGGGATACGCCTAATCCATAGAGTGTCCTTGCTTCATAGGTTGCTGCGTAATATCAGCGATAAAGATTAGATTGAGAAATTGTATCAATCAGCATTTATTGCAATCCTATTGTGAATAGAGCCTAGTGTAATCTAATTAAGACACAGAAATAACAAATTCAACAATAACTTTTTTTAATTTCAAATTAAAGTAATGTTATTTCTATGGAAATGACAATCATGTTCTTGACTTCAGATAACTGATGCTGTTGTTGTTGCACGGATTCTTAATGCCACACTTGTTGTACCTGAGTTGGATCATAATTCTTTTTGGAAGGATGACAGGTAATTTGCATATTGTTTTATACGGTCATTACTCATAATCATTGATTTTAGACTAGTTTATAACTGCTCATTTGATAAAACATACCTTTTTGTAATACATTATAACTGCTCATTTGATAAAACATACCTTTTTGTAATACAGTGACTTCGCCAACATTTTCGATGTTAATTGGTTCATTAATTATCTGGCAAAAGATGTTACTATTGTTAAAAGAGTTCCAGATAAGGTCATGCGGTCAATGGATAAACCCCCATATACCATGCGTGTCCCGAGGAAATCAGATCCTGAATATTATCTTGATCAAGTTTTGCCAATACTCTTGAGACGACGGGTAAGGTTGCATGTTATGATCTAGTATTTGAAATTTCGTGATTGTTTTCACAAGAAAATGTTTTGATTCTGTAAATGCCTGTCATGATGAAACACCTAGTAGCTGGTTAATGTCAGTTTTGATAACTCCTTTTGGAATTCAATTGTGGTGGTAACAGATTTTTCGGTATTTTACAGGTTCTACAATTGACGAAGTTTGACTATAGACTTGCCAATGACCTTGATGATGAACTACAAAAACTACGTTGCCGTGTTAATTATCATGCTTTGAGATTTACAAAACCAATACGACAACTTGGTCAAAAAATTGTAATGAGGATGCGAAAGATGGCAAACCGTTATATAGCAGTCCATTTGAGGTGTGTTCAGTGAACCTTGTGTATGGAATTTAAATTTAACTTCCATCAAAGGCAAAGTGGTGTGAGCTGATCATCAACTCTTTTCCTTATGACATACATGTTGTCCATATATGATCTCATCCCTATATCTTTTGGTGTGTCTGGTTGATTTGTGTTCCCATTTTCACAACTCCTTTATCACTGTCTGAAATTGATTGCATATATTTGAAAAATTCAAAAATGTCAAATTTTTTACACAGCATTATAATAGCAATATGTAAGGTTTCAGCCAATGTTTGAATTCTCATGATCTATGATGATTTATGGCACAGGTTTGAGCCAGATATGCTGGCATTTTCAGGTTGTTATTTTGGTGGGGTGAAAAAGAAAGACAAGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTGCCTGTAAGACTACAATCCTATGATTTCTACTGACAAAACCATATCATTTCCACTGACAATAGTTTCTCCTTTTATCACCCATGGGGCAGTAATCCTGACTTGTTCAAGGATCTATTCATTTGAACTTTTAGAAAATAATGTGATTTTAAAGTTGTGTAAAAATATAATTTTTAGGTGTTGGTTTTATAAGTAGAGGTTATTTCATTATAAAAAGTAGTTTATATTTTAAACGTTATAATTTCAATGTTTTTTCAGATGTTAAAAAGTAGTTTTTCAAAATAATCTGGAATCTGATTTATTTTTTCAAAGTTCTATATTTTTTCAAAAGCTTAACAAACACAAGCAAACAAGCTCCAAAACTAGTTATTTCTTTACCAATATCAAGTGAATGAGCCATTACCTCTTGCAATAATACAGGATTTGAGCCCTGACGGAGAACGAAAGCGTGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGCTGCGAGCGCTTGGTTATACAAATGACACATACCTGTATGTTGCATCGGGGGAAATATACGGTGGGGATGAAACCATGCAGCCTCTCAGAGATCTTTTCCCCAACATCTATACAAAGGAGATGCTTGCCGAGGAAGAATTGAAACCTTTTCTTTCATTCTCTTCCCGCCTAGCTGCTGTTGATTACATTGTTTGTGATGAAAGTAATGTATTTGTTGCTAACAACAACGGTAACATGGCCAGGATTCTTGCTGGTCAAAG

Protein sequence

>MS.gene071543.t1

MGVVKSWLLSTNHTHSNTKNAICSRSIPWSVICGFMLFGLGLISLLTGHVVSHLEWYSQRFVHRSFFSTLDGNDHAPIDIWESQYSKYYYGCKERGRHFYPAIRERMSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHNSFWKDDSDFANIFDVNWFINYLAKDVTIVKRVPDKVMRSMDKPPYTMRVPRKSDPEYYLDQVLPILLRRRVLQLTKFDYRLANDLDDELQKLRCRVNYHALRFTKPIRQLGQKIVMRMRKMANRYIAVHLRYAGIFRLLFWWGEKERQELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGYTNDTYLYVASGEIYGGDETMQPLRDLFPNIYTKEMLAEEELKPFLSFSSRLAAVDYIVCDESNVFVANNNGNMARILAGQ