AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071653

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071653.t1 MTR_1g067630 75.475 526 39 9 1 445 89 605 0.0 724
MS.gene071653.t1 MTR_2g096010 47.259 529 182 10 1 445 84 599 8.94e-141 430
MS.gene071653.t1 MTR_7g105030 44.486 535 191 10 4 447 47 566 3.44e-126 390
MS.gene071653.t1 MTR_7g105030 44.486 535 191 10 4 447 47 566 3.44e-126 390
MS.gene071653.t1 MTR_1g059730 44.216 536 187 12 4 445 51 568 1.69e-122 381
MS.gene071653.t1 MTR_5g066320 33.544 316 134 13 12 261 55 360 6.32e-32 130
MS.gene071653.t1 MTR_3g100270 31.268 339 157 11 13 284 48 377 1.19e-31 129
MS.gene071653.t1 MTR_7g112420 33.735 332 145 15 6 284 311 620 4.65e-31 127
MS.gene071653.t1 MTR_3g102170 33.036 336 136 14 11 266 45 371 4.84e-31 127
MS.gene071653.t1 MTR_7g112420 33.846 325 148 14 6 284 441 744 1.53e-30 125
MS.gene071653.t1 MTR_4g087040 32.565 347 151 13 8 290 230 557 8.71e-30 124
MS.gene071653.t1 MTR_3g117330 30.746 335 173 12 12 299 139 461 1.99e-29 122
MS.gene071653.t1 MTR_3g084790 31.686 344 155 11 12 283 135 470 2.46e-29 122
MS.gene071653.t1 MTR_7g093720 31.562 320 162 9 12 284 113 422 5.71e-29 120
MS.gene071653.t1 MTR_1g083770 31.642 335 159 11 7 289 448 764 1.57e-28 119
MS.gene071653.t1 MTR_1g018940 30.699 329 149 11 13 266 47 371 1.83e-28 119
MS.gene071653.t1 MTR_6g082470 29.397 398 212 15 13 361 77 454 3.46e-28 118
MS.gene071653.t1 MTR_2g069950 29.750 400 197 16 4 339 376 755 4.93e-28 118
MS.gene071653.t1 MTR_1g017540 32.121 330 160 11 13 287 46 366 5.48e-28 117
MS.gene071653.t1 MTR_4g094882 28.249 354 163 13 13 285 51 394 7.69e-28 117
MS.gene071653.t1 MTR_4g071210 31.379 290 146 10 12 259 129 407 8.65e-28 117
MS.gene071653.t1 MTR_4g071210 31.379 290 146 10 12 259 129 407 9.22e-28 117
MS.gene071653.t1 MTR_4g124650 29.539 369 188 13 13 326 188 539 1.60e-27 116
MS.gene071653.t1 MTR_5g049820 27.902 491 263 14 4 430 410 873 2.37e-27 116
MS.gene071653.t1 MTR_1g484960 33.131 329 152 14 13 286 39 354 3.25e-27 115
MS.gene071653.t1 MTR_5g096570 32.895 304 141 11 6 259 473 763 3.78e-27 115
MS.gene071653.t1 MTR_3g113110 29.781 366 188 13 12 332 66 407 3.89e-27 115
MS.gene071653.t1 MTR_4g123730 32.698 315 146 9 10 266 188 494 4.85e-27 115
MS.gene071653.t1 MTR_1g087880 30.061 326 165 11 6 284 433 742 5.54e-27 115
MS.gene071653.t1 MTR_4g071900 26.486 370 218 11 12 337 70 429 8.84e-27 114
MS.gene071653.t1 MTR_5g031470 27.902 491 263 14 4 430 435 898 9.27e-27 114
MS.gene071653.t1 MTR_8g098230 31.475 305 144 13 6 259 522 812 1.18e-26 114
MS.gene071653.t1 MTR_2g087840 32.659 346 159 11 10 292 127 461 1.76e-26 113
MS.gene071653.t1 MTR_3g060900 30.471 361 177 14 6 323 477 806 4.64e-26 112
MS.gene071653.t1 MTR_1g082920 30.745 322 160 12 1 274 180 486 6.82e-26 111
MS.gene071653.t1 MTR_8g072430 30.030 333 172 11 11 299 916 1231 8.60e-26 111
MS.gene071653.t1 MTR_5g049620 27.721 487 261 14 1 423 407 866 1.01e-25 111
MS.gene071653.t1 MTR_7g109130 28.732 355 183 13 6 311 136 469 2.39e-25 109
MS.gene071653.t1 MTR_7g109130 29.014 355 182 14 6 311 215 548 2.41e-25 109
MS.gene071653.t1 MTR_8g080910 32.036 334 156 12 13 285 91 414 2.68e-25 110
MS.gene071653.t1 MTR_7g113520 31.751 337 170 16 1 289 160 484 3.37e-25 109
MS.gene071653.t1 MTR_7g109130 28.732 355 183 13 6 311 437 770 3.66e-25 109
MS.gene071653.t1 MTR_8g098230 30.351 313 145 12 6 259 522 820 3.77e-25 109
MS.gene071653.t1 MTR_7g091290 30.033 303 145 10 7 258 430 716 4.35e-25 109
MS.gene071653.t1 MTR_7g109130 27.731 357 187 12 6 311 437 773 5.11e-24 105
MS.gene071653.t1 MTR_8g076190 27.900 319 178 11 12 287 67 376 2.38e-23 103
MS.gene071653.t1 MTR_8g076190 28.213 319 177 11 12 287 67 376 3.12e-23 103
MS.gene071653.t1 MTR_8g076190 27.358 318 188 9 12 287 67 383 3.68e-23 103
MS.gene071653.t1 MTR_8g471180 28.620 297 152 10 3 257 181 459 4.58e-23 103
MS.gene071653.t1 MTR_2g055910 29.193 322 154 9 13 281 119 419 4.69e-23 102
MS.gene071653.t1 MTR_2g082570 29.703 303 140 11 13 254 446 736 9.17e-23 102
MS.gene071653.t1 MTR_5g021650 28.660 321 169 10 12 285 68 375 1.61e-22 101
MS.gene071653.t1 MTR_7g075060 28.526 312 148 8 12 260 97 396 3.29e-22 100
MS.gene071653.t1 MTR_4g081390 30.233 301 140 10 13 254 479 768 1.38e-21 98.6
MS.gene071653.t1 MTR_7g091290 31.111 270 144 9 7 258 427 672 2.82e-21 97.8
MS.gene071653.t1 MTR_5g025100 27.954 347 179 13 15 310 934 1260 4.13e-21 97.4
MS.gene071653.t1 MTR_2g010760 29.097 299 136 10 13 254 481 760 4.32e-21 97.1
MS.gene071653.t1 MTR_5g011500 28.190 337 164 12 11 280 101 426 7.61e-21 96.3
MS.gene071653.t1 MTR_5g094310 28.212 358 170 15 13 294 109 455 2.48e-20 94.7
MS.gene071653.t1 MTR_4g112350 28.713 303 141 10 13 261 176 457 6.24e-20 93.2
MS.gene071653.t1 MTR_3g055940 26.944 360 177 14 13 297 108 456 1.91e-19 92.0
MS.gene071653.t1 MTR_8g104200 31.304 345 151 16 6 281 553 880 2.13e-18 89.0
MS.gene071653.t1 MTR_7g061020 26.642 274 145 11 28 260 95 353 8.31e-18 86.7
MS.gene071653.t1 MTR_1g081800 29.730 333 161 12 11 287 126 441 3.09e-17 84.7
MS.gene071653.t1 MTR_2g101990 28.173 323 140 12 13 275 235 525 4.71e-17 84.3
MS.gene071653.t1 MTR_6g084490 30.033 303 143 11 7 258 516 800 2.00e-16 82.4
MS.gene071653.t1 MTR_6g086735 28.956 297 137 10 13 258 165 438 3.22e-16 81.6
MS.gene071653.t1 MTR_6g086735 28.956 297 137 10 13 258 165 438 3.35e-16 81.6
MS.gene071653.t1 MTR_4g119980 26.557 305 144 10 13 258 256 539 5.85e-14 74.7
MS.gene071653.t1 MTR_2g082570 29.189 185 82 6 13 150 446 628 5.94e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071653.t1 AT2G37420 57.414 526 133 10 1 445 83 598 0.0 541
MS.gene071653.t1 AT2G37420 57.414 526 133 10 1 445 83 598 0.0 541
MS.gene071653.t1 AT2G28620 45.981 535 195 13 4 455 88 611 1.43e-135 416
MS.gene071653.t1 AT2G28620 45.981 535 195 13 4 455 88 611 1.43e-135 416
MS.gene071653.t1 AT2G28620 45.981 535 195 13 4 455 88 611 3.41e-135 415
MS.gene071653.t1 AT3G45850 46.970 528 183 12 2 445 91 605 1.16e-134 414
MS.gene071653.t1 AT3G45850 46.970 528 183 12 2 445 91 605 1.16e-134 414
MS.gene071653.t1 AT2G36200 44.802 529 198 10 4 447 50 569 1.95e-129 399
MS.gene071653.t1 AT2G36200 42.321 560 198 11 4 447 50 600 9.38e-123 382
MS.gene071653.t1 AT2G21380 32.335 334 169 12 12 299 144 466 1.24e-33 135
MS.gene071653.t1 AT2G21380 32.335 334 169 12 12 299 144 466 1.24e-33 135
MS.gene071653.t1 AT3G12020 30.625 320 165 9 12 284 109 418 2.52e-33 134
MS.gene071653.t1 AT3G12020 30.625 320 165 9 12 284 109 418 2.52e-33 134
MS.gene071653.t1 AT3G12020 30.625 320 165 9 12 284 109 418 2.68e-33 134
MS.gene071653.t1 AT3G12020 30.625 320 165 9 12 284 109 418 2.68e-33 134
MS.gene071653.t1 AT1G59540 32.595 316 155 11 15 281 46 352 1.56e-31 128
MS.gene071653.t1 AT4G39050 32.335 334 169 12 12 299 138 460 1.71e-31 128
MS.gene071653.t1 AT1G09170 29.805 359 181 12 6 309 472 814 9.32e-31 126
MS.gene071653.t1 AT1G09170 29.805 359 181 12 6 309 472 814 9.78e-31 126
MS.gene071653.t1 AT1G09170 29.805 359 181 12 6 309 472 814 1.37e-30 125
MS.gene071653.t1 AT3G23670 32.456 342 159 13 10 283 128 465 1.43e-30 125
MS.gene071653.t1 AT3G23670 32.456 342 159 13 10 283 128 465 1.89e-30 125
MS.gene071653.t1 AT1G09170 30.383 339 173 10 6 297 472 794 3.48e-30 124
MS.gene071653.t1 AT1G09170 30.383 339 173 10 6 297 472 794 3.48e-30 124
MS.gene071653.t1 AT2G22610 29.004 462 233 20 1 415 451 864 1.40e-29 122
MS.gene071653.t1 AT2G22610 29.004 462 233 20 1 415 450 863 1.42e-29 122
MS.gene071653.t1 AT4G14150 30.508 354 170 10 11 294 124 471 1.46e-29 123
MS.gene071653.t1 AT2G22610 29.004 462 233 20 1 415 450 863 1.69e-29 122
MS.gene071653.t1 AT1G21730 32.716 324 165 12 13 291 116 431 1.78e-29 122
MS.gene071653.t1 AT5G47820 30.838 334 146 12 13 266 50 378 1.96e-29 122
MS.gene071653.t1 AT5G47820 30.838 334 146 12 13 266 50 378 1.96e-29 122
MS.gene071653.t1 AT3G50240 30.028 353 154 16 13 285 64 403 3.62e-29 121
MS.gene071653.t1 AT3G50240 30.028 353 154 16 13 285 64 403 3.64e-29 121
MS.gene071653.t1 AT3G50240 30.028 353 154 16 13 285 64 403 3.70e-29 121
MS.gene071653.t1 AT5G27000 31.707 328 157 12 6 284 433 742 5.20e-29 121
MS.gene071653.t1 AT5G06670 30.312 320 166 9 12 284 106 415 7.74e-29 120
MS.gene071653.t1 AT5G06670 30.312 320 166 9 12 284 106 415 7.74e-29 120
MS.gene071653.t1 AT3G17360 33.333 315 144 10 10 266 207 513 8.48e-29 120
MS.gene071653.t1 AT3G17360 33.333 315 144 10 10 266 207 513 9.20e-29 120
MS.gene071653.t1 AT3G17360 33.333 315 144 10 10 266 207 513 9.30e-29 120
MS.gene071653.t1 AT5G06670 30.312 320 166 9 12 284 106 415 1.14e-28 119
MS.gene071653.t1 AT5G06670 30.312 320 166 9 12 284 106 415 1.14e-28 119
MS.gene071653.t1 AT5G06670 30.312 320 166 9 12 284 106 415 1.14e-28 119
MS.gene071653.t1 AT5G06670 30.312 320 166 9 12 284 106 415 1.20e-28 119
MS.gene071653.t1 AT1G73860 29.730 296 148 9 13 259 472 756 1.27e-28 120
MS.gene071653.t1 AT3G19050 33.123 317 142 12 10 266 232 538 1.29e-28 120
MS.gene071653.t1 AT1G73860 29.730 296 148 9 13 259 555 839 2.20e-28 119
MS.gene071653.t1 AT1G72250 28.536 403 213 15 4 346 536 923 2.26e-28 119
MS.gene071653.t1 AT1G72250 28.536 403 213 15 4 346 548 935 2.38e-28 119
MS.gene071653.t1 AT1G72250 28.536 403 213 15 4 346 527 914 2.59e-28 119
MS.gene071653.t1 AT1G18410 28.989 376 188 14 3 329 668 1013 2.64e-28 119
MS.gene071653.t1 AT1G72250 28.536 403 213 15 4 346 547 934 2.68e-28 119
MS.gene071653.t1 AT1G18410 29.966 297 157 9 3 259 515 800 4.02e-28 118
MS.gene071653.t1 AT3G44050 32.174 345 164 10 10 293 132 467 5.56e-28 118
MS.gene071653.t1 AT3G51150 29.283 321 175 11 12 289 65 376 5.84e-28 118
MS.gene071653.t1 AT3G44730 31.788 302 145 10 7 259 462 751 6.10e-28 118
MS.gene071653.t1 AT3G44730 31.788 302 145 10 7 259 462 751 6.10e-28 118
MS.gene071653.t1 AT3G10180 30.029 343 179 13 12 305 39 369 6.39e-28 118
MS.gene071653.t1 AT3G51150 29.283 321 175 11 12 289 65 376 6.52e-28 117
MS.gene071653.t1 AT3G51150 29.283 321 175 11 12 289 65 376 6.52e-28 117
MS.gene071653.t1 AT3G51150 29.283 321 175 11 12 289 65 376 6.52e-28 117
MS.gene071653.t1 AT3G44730 31.788 302 145 10 7 259 417 706 7.12e-28 117
MS.gene071653.t1 AT3G44730 31.788 302 145 10 7 259 417 706 7.12e-28 117
MS.gene071653.t1 AT3G10180 30.029 343 179 13 12 305 39 369 7.51e-28 117
MS.gene071653.t1 AT1G18410 28.125 384 189 14 3 329 525 878 7.88e-28 117
MS.gene071653.t1 AT1G18410 28.125 384 189 14 3 329 525 878 7.88e-28 117
MS.gene071653.t1 AT1G18410 28.125 384 189 14 3 329 668 1021 1.27e-27 117
MS.gene071653.t1 AT5G60930 28.571 364 171 11 12 294 44 399 1.91e-27 116
MS.gene071653.t1 AT4G38950 30.220 364 199 13 12 329 59 413 2.07e-27 116
MS.gene071653.t1 AT4G38950 30.220 364 199 13 12 329 59 413 2.07e-27 116
MS.gene071653.t1 AT4G38950 30.220 364 199 13 12 329 59 413 2.07e-27 116
MS.gene071653.t1 AT4G38950 30.220 364 199 13 12 329 59 413 2.07e-27 116
MS.gene071653.t1 AT4G38950 30.220 364 199 13 12 329 59 413 2.07e-27 116
MS.gene071653.t1 AT5G60930 28.571 364 171 11 12 294 44 399 2.16e-27 116
MS.gene071653.t1 AT5G60930 28.571 364 171 11 12 294 44 399 2.24e-27 116
MS.gene071653.t1 AT2G47500 31.208 298 143 9 11 259 441 725 2.93e-27 115
MS.gene071653.t1 AT2G47500 31.208 298 143 9 11 259 441 725 3.08e-27 115
MS.gene071653.t1 AT1G18370 28.266 421 221 17 2 362 60 459 3.67e-27 115
MS.gene071653.t1 AT3G54870 26.829 451 209 15 13 401 150 541 9.57e-27 114
MS.gene071653.t1 AT3G54870 26.829 451 209 15 13 401 150 541 9.96e-27 114
MS.gene071653.t1 AT3G54870 26.829 451 209 15 13 401 150 541 1.03e-26 114
MS.gene071653.t1 AT3G43210 28.646 384 204 13 13 346 74 437 1.88e-26 113
MS.gene071653.t1 AT3G43210 28.646 384 204 13 13 346 74 437 1.88e-26 113
MS.gene071653.t1 AT3G43210 28.646 384 204 13 13 346 74 437 1.88e-26 113
MS.gene071653.t1 AT3G43210 28.646 384 204 13 13 346 74 437 1.88e-26 113
MS.gene071653.t1 AT3G43210 28.646 384 204 13 13 346 74 437 1.88e-26 113
MS.gene071653.t1 AT5G06670 29.483 329 166 10 12 284 106 424 2.18e-26 113
MS.gene071653.t1 AT5G06670 29.483 329 166 10 12 284 106 424 2.18e-26 113
MS.gene071653.t1 AT5G41310 31.164 292 142 13 7 259 462 733 6.66e-26 111
MS.gene071653.t1 AT5G27550 31.210 314 156 12 1 267 165 465 1.79e-25 110
MS.gene071653.t1 AT5G27550 31.210 314 156 12 1 267 165 465 1.79e-25 110
MS.gene071653.t1 AT4G24170 27.877 391 195 15 1 329 41 406 1.84e-25 110
MS.gene071653.t1 AT4G24170 27.877 391 195 15 1 329 41 406 1.84e-25 110
MS.gene071653.t1 AT2G21300 26.738 374 204 13 12 332 70 426 2.24e-25 110
MS.gene071653.t1 AT2G21300 26.738 374 204 13 12 332 70 426 2.24e-25 110
MS.gene071653.t1 AT2G21300 26.738 374 204 13 12 332 70 426 2.24e-25 110
MS.gene071653.t1 AT2G21300 26.738 374 204 13 12 332 70 426 2.24e-25 110
MS.gene071653.t1 AT2G21300 26.738 374 204 13 12 332 70 426 2.24e-25 110
MS.gene071653.t1 AT5G66310 27.128 376 216 11 12 340 66 430 1.30e-24 107
MS.gene071653.t1 AT5G66310 27.128 376 216 11 12 340 66 430 1.30e-24 107
MS.gene071653.t1 AT5G66310 27.128 376 216 11 12 340 66 430 1.30e-24 107
MS.gene071653.t1 AT1G09170 30.357 336 173 13 6 309 472 778 1.43e-24 107
MS.gene071653.t1 AT3G10310 28.667 300 157 9 7 259 401 690 2.34e-24 107
MS.gene071653.t1 AT3G10310 28.667 300 157 9 7 259 401 690 2.60e-24 107
MS.gene071653.t1 AT1G59540 34.440 241 112 10 78 281 29 260 5.58e-24 105
MS.gene071653.t1 AT3G49650 29.674 337 162 13 4 286 57 372 7.01e-24 105
MS.gene071653.t1 AT5G54670 29.667 300 142 11 12 254 382 669 7.52e-24 105
MS.gene071653.t1 AT5G54670 29.667 300 142 11 12 254 442 729 1.15e-23 104
MS.gene071653.t1 AT5G54670 29.667 300 142 11 12 254 442 729 1.15e-23 104
MS.gene071653.t1 AT4G27180 29.431 299 142 10 13 254 434 720 6.23e-23 102
MS.gene071653.t1 AT4G27180 29.431 299 142 10 13 254 434 720 6.23e-23 102
MS.gene071653.t1 AT1G63640 28.947 304 153 11 6 259 501 791 2.40e-22 100
MS.gene071653.t1 AT1G63640 28.947 304 153 11 6 259 511 801 2.41e-22 100
MS.gene071653.t1 AT1G63640 28.947 304 153 11 6 259 511 801 2.41e-22 100
MS.gene071653.t1 AT1G63640 28.947 304 153 11 6 259 511 801 2.46e-22 100
MS.gene071653.t1 AT1G12430 29.582 311 146 11 12 260 115 414 2.71e-22 100
MS.gene071653.t1 AT1G12430 29.582 311 146 11 12 260 115 414 2.71e-22 100
MS.gene071653.t1 AT1G18550 29.932 294 144 9 13 259 204 482 3.37e-22 100
MS.gene071653.t1 AT3G50240 33.948 271 101 13 79 285 45 301 4.78e-22 100
MS.gene071653.t1 AT1G01950 29.618 314 144 10 11 260 104 404 8.24e-22 99.4
MS.gene071653.t1 AT5G65930 28.399 331 172 14 15 299 932 1243 9.34e-22 99.4
MS.gene071653.t1 AT5G65930 28.399 331 172 14 15 299 933 1244 9.43e-22 99.4
MS.gene071653.t1 AT1G01950 29.618 314 144 10 11 260 104 404 9.67e-22 99.0
MS.gene071653.t1 AT1G01950 29.618 314 144 10 11 260 104 404 9.82e-22 99.0
MS.gene071653.t1 AT3G63480 29.032 310 163 9 6 266 41 342 1.10e-21 97.8
MS.gene071653.t1 AT5G65930 28.399 331 172 14 15 299 939 1250 1.19e-21 99.0
MS.gene071653.t1 AT1G09170 28.938 273 136 8 6 231 472 733 1.85e-21 98.2
MS.gene071653.t1 AT1G09170 28.938 273 136 8 6 231 472 733 1.85e-21 98.2
MS.gene071653.t1 AT1G63640 28.859 298 154 11 6 259 511 794 2.00e-21 98.2
MS.gene071653.t1 AT5G65460 28.912 294 155 9 3 257 173 451 2.12e-21 98.2
MS.gene071653.t1 AT5G65460 28.912 294 155 9 3 257 173 451 2.66e-21 97.8
MS.gene071653.t1 AT5G65460 28.912 294 155 9 3 257 173 451 2.78e-21 97.8
MS.gene071653.t1 AT5G65460 28.912 294 155 9 3 257 173 451 2.81e-21 97.8
MS.gene071653.t1 AT3G63480 28.707 317 159 9 6 266 41 346 3.45e-21 96.3
MS.gene071653.t1 AT5G65460 28.904 301 153 11 3 257 173 458 6.98e-21 96.7
MS.gene071653.t1 AT4G21270 28.808 302 144 10 13 254 478 768 6.07e-20 93.6
MS.gene071653.t1 AT1G55550 26.593 361 199 12 11 319 128 474 6.98e-20 93.2
MS.gene071653.t1 AT5G02370 25.753 299 177 9 13 278 74 360 3.57e-19 90.5
MS.gene071653.t1 AT3G16060 29.932 294 138 12 13 258 219 492 1.22e-18 89.4
MS.gene071653.t1 AT5G27950 27.217 327 159 12 11 282 117 419 1.42e-16 82.8
MS.gene071653.t1 AT3G16630 28.669 293 153 11 13 258 243 526 5.12e-15 78.2
MS.gene071653.t1 AT3G16630 28.669 293 153 11 13 258 243 526 5.12e-15 78.2
MS.gene071653.t1 AT3G51150 32.447 188 95 6 125 289 45 223 2.74e-14 75.9
MS.gene071653.t1 AT1G01950 29.151 271 131 7 70 290 34 293 2.77e-13 72.8
MS.gene071653.t1 AT3G20150 25.581 344 175 11 10 284 133 464 7.13e-13 71.6
MS.gene071653.t1 AT3G20150 25.581 344 175 11 10 284 133 464 7.83e-13 71.2
MS.gene071653.t1 AT5G65460 29.469 207 109 6 76 257 11 205 8.76e-11 64.7

Find 79 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGCACTGTCTTTGCTTA+TGG 0.179122 1.1:+49866553 MS.gene071653:CDS
TTTACCTGATTTCAGTAGTT+TGG 0.254932 1.1:-49869333 None:intergenic
GATTTGCATACAACCATTAT+AGG 0.274995 1.1:+49869915 MS.gene071653:CDS
ATTGATCTCTGTTGTGATTT+CGG 0.296531 1.1:-49866481 None:intergenic
ATTCTGCGCATGTACCTTAC+AGG 0.303011 1.1:+49868101 MS.gene071653:CDS
ATGATCTTCAAGAGAATTAC+AGG 0.322384 1.1:+49869270 MS.gene071653:intron
GAAGAAACCTGTAGCCCTTA+TGG 0.347923 1.1:+49866923 MS.gene071653:CDS
AACTTTCTCTACTTGTTTGT+TGG 0.348646 1.1:-49866338 None:intergenic
TTCTTCACTCTTTCTTCAAT+AGG 0.359638 1.1:-49866906 None:intergenic
GCAAGAACAGAAACTGGATT+TGG 0.371508 1.1:+49869115 MS.gene071653:CDS
GGCCTGGTAGAACTGTCTTC+TGG 0.373427 1.1:-49866885 None:intergenic
CGAGAACTTCATTGACAATT+GGG 0.374555 1.1:-49866522 None:intergenic
TCGAGAACTTCATTGACAAT+TGG 0.379235 1.1:-49866523 None:intergenic
AACAGAGCAAGAACAGAAAC+TGG 0.390278 1.1:+49869109 MS.gene071653:CDS
GGATTTGGAATGCGAGCTTA+AGG 0.393290 1.1:+49869130 MS.gene071653:CDS
CCATCTTCCATAAGGGCTAC+AGG 0.404889 1.1:-49866930 None:intergenic
TAGTCCGTCTGCTTATTGTT+TGG 0.417215 1.1:+49868283 MS.gene071653:CDS
TGATTTCAGTAGTTTGGAAA+TGG 0.423803 1.1:-49869327 None:intergenic
GCTAGTTGTTTCAAAGTTGA+AGG 0.424996 1.1:+49869292 MS.gene071653:CDS
TTTGTTGAAGGACTTGTACT+TGG 0.431244 1.1:+49868481 MS.gene071653:CDS
CACTCTTTCTTCAATAGGCC+TGG 0.432300 1.1:-49866901 None:intergenic
TTGCTCTACTAGCATAGTCT+AGG 0.434387 1.1:-49868322 None:intergenic
TTTGTGCAGTCGTTCACATT+CGG 0.436483 1.1:+49867156 MS.gene071653:intron
CAGGGCCGTGCTAGAGAAGC+AGG 0.446800 1.1:+49868021 MS.gene071653:intron
TTCCTTTGCAGCCTCAATCA+AGG 0.452388 1.1:-49869445 None:intergenic
TTGAGAAATAGATCCTATAA+TGG 0.454865 1.1:-49869928 None:intergenic
TGACAATTGGGGAAATTGCT+TGG 0.459148 1.1:-49866510 None:intergenic
ATTTCCAAACTACTGAAATC+AGG 0.466246 1.1:+49869329 MS.gene071653:CDS
CCTGTAGCCCTTATGGAAGA+TGG 0.471287 1.1:+49866930 MS.gene071653:CDS
CTTATGGAACAGACCGGGAC+TGG 0.472047 1.1:+49866569 MS.gene071653:CDS
CGCATTTATCTACACGTCCC+AGG 0.476453 1.1:-49868068 None:intergenic
TTCTTGCAGATCACAAAGAA+AGG 0.483227 1.1:+49869829 MS.gene071653:intron
ATACTTTCTGACTGAGGTTG+AGG 0.484486 1.1:-49868968 None:intergenic
TGTTTCAAAGTTGAAGGAGA+AGG 0.485762 1.1:+49869298 MS.gene071653:CDS
CATGTTAATATGAACCTGTA+AGG 0.486111 1.1:-49868115 None:intergenic
AAAATTTGACGAACTGCTCT+CGG 0.492168 1.1:-49866773 None:intergenic
CATTGCTTAACAAGAGAAGC+AGG 0.496816 1.1:+49867060 MS.gene071653:CDS
TATGTGAAAGAAACAGTAAT+TGG 0.508611 1.1:+49867196 MS.gene071653:CDS
AGGATATTACGAGATTCCTT+AGG 0.510487 1.1:+49868227 MS.gene071653:CDS
TGCCTTGATTGAGGCTGCAA+AGG 0.515921 1.1:+49869443 MS.gene071653:CDS
TCAGAGATAGTAAGCTTACA+AGG 0.521004 1.1:+49868207 MS.gene071653:intron
TTCTTTCACATAGACAGTAA+TGG 0.521841 1.1:-49867185 None:intergenic
ATATTACGAGATTCCTTAGG+AGG 0.529688 1.1:+49868230 MS.gene071653:CDS
GCCCTTATGGAAGATGGAAA+AGG 0.531692 1.1:+49866936 MS.gene071653:CDS
TGCTCTACTAGCATAGTCTA+GGG 0.537773 1.1:-49868321 None:intergenic
AACAGAAACAACTAAATGCA+TGG 0.540010 1.1:+49869952 MS.gene071653:CDS
TGCAGATCACAAAGAAAGGA+TGG 0.550426 1.1:+49869833 MS.gene071653:intron
CTCCAGAAGACAGTTCTACC+AGG 0.551796 1.1:+49866883 MS.gene071653:CDS
TCTCCCCTGCTTCTCTAGCA+CGG 0.553152 1.1:-49868026 None:intergenic
TGCAGATGTACGAGCAGCGA+GGG 0.557824 1.1:+49868602 MS.gene071653:intron
AGAAACAGTAATTGGTGATG+AGG 0.558678 1.1:+49867204 MS.gene071653:CDS
TTGTCAATGAAGTTCTCGAC+GGG 0.559114 1.1:+49866527 MS.gene071653:CDS
CTTACAGGTTCATATTAACA+TGG 0.561593 1.1:+49868116 MS.gene071653:CDS
CAAAGAAGAAGCTGAAAAGA+AGG 0.562709 1.1:+49868661 MS.gene071653:CDS
AACAAGAGCTTACTCACCCT+GGG 0.564453 1.1:+49868051 MS.gene071653:CDS
GAAATTGAGAGAATGAAAGA+AGG 0.574967 1.1:+49868503 MS.gene071653:CDS
AAACAAGAGCTTACTCACCC+TGG 0.578635 1.1:+49868050 MS.gene071653:CDS
CGTGTAGATAAATGCGCTCG+TGG 0.583379 1.1:+49868075 MS.gene071653:CDS
GGCTGCAAAGGAAATGTGTA+CGG 0.583895 1.1:+49869455 MS.gene071653:CDS
GGGCCGTGCTAGAGAAGCAG+GGG 0.592427 1.1:+49868023 MS.gene071653:intron
CTTTGCTTATGGAACAGACC+GGG 0.597650 1.1:+49866564 MS.gene071653:CDS
AACAGAAAATGCCTTGATTG+AGG 0.605541 1.1:+49869434 MS.gene071653:intron
AATATAAAGAATAAGCCTGA+GGG 0.606594 1.1:+49868347 MS.gene071653:CDS
GCATTTATCTACACGTCCCA+GGG 0.609530 1.1:-49868067 None:intergenic
TCTTTGCTTATGGAACAGAC+CGG 0.614773 1.1:+49866563 MS.gene071653:CDS
ATGCGAGCTTAAGGATTGCA+AGG 0.618764 1.1:+49869139 MS.gene071653:CDS
CGAGCAGCGAGGGAAAAGAA+TGG 0.620002 1.1:+49868612 MS.gene071653:CDS
TATTACGAGATTCCTTAGGA+GGG 0.621917 1.1:+49868231 MS.gene071653:CDS
ATTGTCAATGAAGTTCTCGA+CGG 0.631832 1.1:+49866526 MS.gene071653:CDS
AGGGCCGTGCTAGAGAAGCA+GGG 0.634214 1.1:+49868022 MS.gene071653:intron
TCTTCCAAACAATAAGCAGA+CGG 0.637285 1.1:-49868287 None:intergenic
CGGGGAATACTTTCTGACTG+AGG 0.646451 1.1:-49868974 None:intergenic
AAATATAAAGAATAAGCCTG+AGG 0.653614 1.1:+49868346 MS.gene071653:CDS
GAGAACTTCATTGACAATTG+GGG 0.654278 1.1:-49866521 None:intergenic
GCTCTGTTAAGTAGAGCTCA+CGG 0.658800 1.1:-49869094 None:intergenic
GATGAGGAGTTGATTAAGTG+TGG 0.662029 1.1:+49867220 MS.gene071653:CDS
ATGCAGATGTACGAGCAGCG+AGG 0.713547 1.1:+49868601 MS.gene071653:intron
AGATCACAAAGAAAGGATGG+AGG 0.714530 1.1:+49869836 MS.gene071653:intron
TGGAACGAGGAGCATCAAAG+AGG 0.716495 1.1:+49867024 MS.gene071653:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTAAATAAGAAATTA+TGG - chr1.1:49869191-49869210 None:intergenic 10.0%
!! AAATAATAATTACGTGTATT+TGG + chr1.1:49867420-49867439 MS.gene071653:intron 15.0%
!! TAATAGTATTATAACATTGT+CGG + chr1.1:49868723-49868742 MS.gene071653:intron 15.0%
!! TATCAAATTAAATTACTCTT+AGG + chr1.1:49869216-49869235 MS.gene071653:intron 15.0%
!!! AAAAATTCACGATTATTTTT+TGG - chr1.1:49869869-49869888 None:intergenic 15.0%
!!! AAAGCTAATATTTTTCTAAT+AGG + chr1.1:49868433-49868452 MS.gene071653:intron 15.0%
!!! AAATTTTTTGTCATCTAAAT+TGG + chr1.1:49869503-49869522 MS.gene071653:CDS 15.0%
!!! AATTTTTTGTCATCTAAATT+GGG + chr1.1:49869504-49869523 MS.gene071653:CDS 15.0%
!!! TTCAATACTTATGTATATTT+TGG - chr1.1:49867789-49867808 None:intergenic 15.0%
!!! TTTTAAATAAGAAATTATGG+AGG - chr1.1:49869188-49869207 None:intergenic 15.0%
!! TAAACATCTATAAGCTTATA+TGG - chr1.1:49867692-49867711 None:intergenic 20.0%
!! TAATGCAATAATATCTAGAA+AGG - chr1.1:49869776-49869795 None:intergenic 20.0%
!! TTAAAAGAAAATATGCTCAT+GGG + chr1.1:49869671-49869690 MS.gene071653:intron 20.0%
!! TTTAAAAGAAAATATGCTCA+TGG + chr1.1:49869670-49869689 MS.gene071653:intron 20.0%
!!! CGTCAAATTTTTTGATATTT+TGG + chr1.1:49866785-49866804 MS.gene071653:CDS 20.0%
!!! GAGCATATTTTCTTTTAAAA+GGG - chr1.1:49869669-49869688 None:intergenic 20.0%
!!! TACTGTTATGACATTTTTAA+GGG - chr1.1:49868392-49868411 None:intergenic 20.0%
!!! TGAGCATATTTTCTTTTAAA+AGG - chr1.1:49869670-49869689 None:intergenic 20.0%
! AAAGCTATCTTACTATGATA+CGG + chr1.1:49866389-49866408 MS.gene071653:intron 25.0%
! AAATATAAAGAATAAGCCTG+AGG + chr1.1:49868346-49868365 MS.gene071653:CDS 25.0%
! AAATGAAATCTATACTCTGT+TGG + chr1.1:49867004-49867023 MS.gene071653:intron 25.0%
! AAGAACAAAGAACATATTGA+TGG - chr1.1:49869554-49869573 None:intergenic 25.0%
! AAGCTTACAATATTTGCTTA+TGG + chr1.1:49867660-49867679 MS.gene071653:intron 25.0%
! AATATAAAGAATAAGCCTGA+GGG + chr1.1:49868347-49868366 MS.gene071653:CDS 25.0%
! ACACTGAAAATTCCATATTT+AGG + chr1.1:49868834-49868853 MS.gene071653:intron 25.0%
! ACGCCAAAAATTAATCAAAT+TGG - chr1.1:49867618-49867637 None:intergenic 25.0%
! AGATGTTTATGAAGTTACAT+GGG + chr1.1:49867703-49867722 MS.gene071653:intron 25.0%
! AGGAACAAAGAACATAAAAA+AGG - chr1.1:49869637-49869656 None:intergenic 25.0%
! ATAAAACACAACTTAAGCTA+GGG - chr1.1:49868898-49868917 None:intergenic 25.0%
! ATCTAGAAAGGAAATGAATA+AGG - chr1.1:49869764-49869783 None:intergenic 25.0%
! CACCCTATATTTATAAATCA+CGG - chr1.1:49866724-49866743 None:intergenic 25.0%
! CAGAACTTAAATAAAAGTGA+AGG - chr1.1:49868531-49868550 None:intergenic 25.0%
! CATAAAATGCTTGTATAACT+TGG + chr1.1:49867894-49867913 MS.gene071653:intron 25.0%
! CGACTATAAGTGAATTTAAA+TGG + chr1.1:49867958-49867977 MS.gene071653:intron 25.0%
! CGCCAAAAATTAATCAAATT+GGG - chr1.1:49867617-49867636 None:intergenic 25.0%
! GGAACAAAGAACATAAAAAA+GGG - chr1.1:49869636-49869655 None:intergenic 25.0%
! GTAACATAACATCATATAAC+CGG - chr1.1:49866675-49866694 None:intergenic 25.0%
! TAAAACTTCTTGTAAATAGC+AGG - chr1.1:49867833-49867852 None:intergenic 25.0%
! TAGATGTTTATGAAGTTACA+TGG + chr1.1:49867702-49867721 MS.gene071653:intron 25.0%
! TATGTGAAAGAAACAGTAAT+TGG + chr1.1:49867196-49867215 MS.gene071653:CDS 25.0%
! TATGTTCTTTGTTCTTGATA+TGG + chr1.1:49869558-49869577 MS.gene071653:intron 25.0%
! TCTAGAAAGGAAATGAATAA+GGG - chr1.1:49869763-49869782 None:intergenic 25.0%
! TGAACAAAGAATATGATACA+AGG - chr1.1:49868569-49868588 None:intergenic 25.0%
! TGCCGTGATTTATAAATATA+GGG + chr1.1:49866719-49866738 MS.gene071653:intron 25.0%
! TTGAGAAATAGATCCTATAA+TGG - chr1.1:49869931-49869950 None:intergenic 25.0%
! TTGCCGTGATTTATAAATAT+AGG + chr1.1:49866718-49866737 MS.gene071653:intron 25.0%
! TTTGCAACAATATGATTACA+GGG + chr1.1:49868003-49868022 MS.gene071653:intron 25.0%
!! AAGTTAATCTTTTAGTGCAT+TGG + chr1.1:49867397-49867416 MS.gene071653:intron 25.0%
!! AATTTTTCATCTCTCTTGAA+TGG + chr1.1:49869882-49869901 MS.gene071653:CDS 25.0%
!! ACATGGTTTTCAATTATTGT+TGG + chr1.1:49868133-49868152 MS.gene071653:intron 25.0%
!! AGCCCAATTTGATTAATTTT+TGG + chr1.1:49867612-49867631 MS.gene071653:intron 25.0%
!! ATTTTTCATCTCTCTTGAAT+GGG + chr1.1:49869883-49869902 MS.gene071653:CDS 25.0%
!! CTACTGTTATGACATTTTTA+AGG - chr1.1:49868393-49868412 None:intergenic 25.0%
!!! CAATTGTTTTTGAATCTGTT+TGG + chr1.1:49866445-49866464 MS.gene071653:intron 25.0%
!!! CTTCACTTTTATTTAAGTTC+TGG + chr1.1:49868529-49868548 MS.gene071653:intron 25.0%
!!! GAAAGTTTTCAATTTTGACA+AGG + chr1.1:49866354-49866373 MS.gene071653:CDS 25.0%
!!! GCGTTAATTGTTTTAGAAAT+TGG + chr1.1:49869727-49869746 MS.gene071653:intron 25.0%
!!! TATGACATTTTTAAGGGTAA+TGG - chr1.1:49868386-49868405 None:intergenic 25.0%
!!! TCTACTTTTGTTAATTTGCA+AGG + chr1.1:49867329-49867348 MS.gene071653:intron 25.0%
AAAACAATTAACGCATGATG+AGG - chr1.1:49869721-49869740 None:intergenic 30.0%
AACAGAAACAACTAAATGCA+TGG + chr1.1:49869952-49869971 MS.gene071653:CDS 30.0%
AACTTTCTCTACTTGTTTGT+TGG - chr1.1:49866341-49866360 None:intergenic 30.0%
ATGATCTTCAAGAGAATTAC+AGG + chr1.1:49869270-49869289 MS.gene071653:intron 30.0%
ATTGATCTCTGTTGTGATTT+CGG - chr1.1:49866484-49866503 None:intergenic 30.0%
ATTTCCAAACTACTGAAATC+AGG + chr1.1:49869329-49869348 MS.gene071653:CDS 30.0%
CATGTTAATATGAACCTGTA+AGG - chr1.1:49868118-49868137 None:intergenic 30.0%
CGTGATTTATAAATATAGGG+TGG + chr1.1:49866722-49866741 MS.gene071653:intron 30.0%
CTTACAGGTTCATATTAACA+TGG + chr1.1:49868116-49868135 MS.gene071653:CDS 30.0%
GAAATTGAGAGAATGAAAGA+AGG + chr1.1:49868503-49868522 MS.gene071653:CDS 30.0%
GATAAAACACAACTTAAGCT+AGG - chr1.1:49868899-49868918 None:intergenic 30.0%
GATTTGCATACAACCATTAT+AGG + chr1.1:49869915-49869934 MS.gene071653:CDS 30.0%
GCAGATACTAAAGCAAATAA+AGG - chr1.1:49868688-49868707 None:intergenic 30.0%
GTTTGCAACAATATGATTAC+AGG + chr1.1:49868002-49868021 MS.gene071653:intron 30.0%
TAGAACATGCATCCTAAATA+TGG - chr1.1:49868849-49868868 None:intergenic 30.0%
TAGGAATAAATGTCAACCAA+AGG - chr1.1:49869003-49869022 None:intergenic 30.0%
TAGTATTATAACATTGTCGG+AGG + chr1.1:49868726-49868745 MS.gene071653:intron 30.0%
TCAGAAAATATACTACGTTC+CGG + chr1.1:49867272-49867291 MS.gene071653:intron 30.0%
TGATTTCAGTAGTTTGGAAA+TGG - chr1.1:49869330-49869349 None:intergenic 30.0%
TGTAATTCTCTTGAAGATCA+TGG - chr1.1:49869271-49869290 None:intergenic 30.0%
TTCTTCACTCTTTCTTCAAT+AGG - chr1.1:49866909-49866928 None:intergenic 30.0%
TTCTTTCACATAGACAGTAA+TGG - chr1.1:49867188-49867207 None:intergenic 30.0%
TTCTTTGTTCTTGATATGGT+GGG + chr1.1:49869562-49869581 MS.gene071653:intron 30.0%
TTTACCTGATTTCAGTAGTT+TGG - chr1.1:49869336-49869355 None:intergenic 30.0%
! AAGCTTAATCTTGTTGATTG+GGG + chr1.1:49867244-49867263 MS.gene071653:intron 30.0%
! AATCTGTTTGGTAAGGTTTT+CGG + chr1.1:49866457-49866476 MS.gene071653:intron 30.0%
! CAAGCTTAATCTTGTTGATT+GGG + chr1.1:49867243-49867262 MS.gene071653:intron 30.0%
! CAATTGATGATATGCTACAA+AGG + chr1.1:49869357-49869376 MS.gene071653:intron 30.0%
! CTACTTGCTGCAAAATAAAT+TGG - chr1.1:49869067-49869086 None:intergenic 30.0%
! GCTAGGTTTCTTTTTACTTT+TGG + chr1.1:49867085-49867104 MS.gene071653:intron 30.0%
! GTTTTTGAATCTGTTTGGTA+AGG + chr1.1:49866450-49866469 MS.gene071653:intron 30.0%
! TTGCAAGGTAATTTGTCATT+TGG + chr1.1:49867344-49867363 MS.gene071653:intron 30.0%
!! TGATATAGCTGATTTGCTAT+TGG - chr1.1:49867370-49867389 None:intergenic 30.0%
!!! AAACAGCCTTTGAAACTTTT+TGG - chr1.1:49868463-49868482 None:intergenic 30.0%
AAAATTTGACGAACTGCTCT+CGG - chr1.1:49866776-49866795 None:intergenic 35.0%
AAAGAAAGAGGACCAAAATC+AGG - chr1.1:49867927-49867946 None:intergenic 35.0%
AACAGAAAATGCCTTGATTG+AGG + chr1.1:49869434-49869453 MS.gene071653:intron 35.0%
AAGAGGACTTGAAGAAGAAT+CGG + chr1.1:49866971-49866990 MS.gene071653:intron 35.0%
ACATAACATCATATAACCGG+TGG - chr1.1:49866672-49866691 None:intergenic 35.0%
ACCTTAATATGCATGCCATT+TGG + chr1.1:49868172-49868191 MS.gene071653:intron 35.0%
AGGATATTACGAGATTCCTT+AGG + chr1.1:49868227-49868246 MS.gene071653:CDS 35.0%
ATATTACGAGATTCCTTAGG+AGG + chr1.1:49868230-49868249 MS.gene071653:CDS 35.0%
ATTGTCAATGAAGTTCTCGA+CGG + chr1.1:49866526-49866545 MS.gene071653:CDS 35.0%
CAAAGAAGAAGCTGAAAAGA+AGG + chr1.1:49868661-49868680 MS.gene071653:CDS 35.0%
CGAGAACTTCATTGACAATT+GGG - chr1.1:49866525-49866544 None:intergenic 35.0%
GACTGGTAAAACTTATACGA+TGG + chr1.1:49866586-49866605 MS.gene071653:intron 35.0%
GAGAACTTCATTGACAATTG+GGG - chr1.1:49866524-49866543 None:intergenic 35.0%
GCAAGCTTAATCTTGTTGAT+TGG + chr1.1:49867242-49867261 MS.gene071653:intron 35.0%
GGCAAACCAAAAAGTTTCAA+AGG + chr1.1:49868454-49868473 MS.gene071653:intron 35.0%
GGTAAAACTTATACGATGGA+GGG + chr1.1:49866590-49866609 MS.gene071653:intron 35.0%
GTTCTTTGTTCTTGATATGG+TGG + chr1.1:49869561-49869580 MS.gene071653:intron 35.0%
TAAATGTCAACCAAAGGACT+CGG - chr1.1:49868997-49869016 None:intergenic 35.0%
TATTACGAGATTCCTTAGGA+GGG + chr1.1:49868231-49868250 MS.gene071653:CDS 35.0%
TCAGAGATAGTAAGCTTACA+AGG + chr1.1:49868207-49868226 MS.gene071653:intron 35.0%
TCGAGAACTTCATTGACAAT+TGG - chr1.1:49866526-49866545 None:intergenic 35.0%
TCTTCCAAACAATAAGCAGA+CGG - chr1.1:49868290-49868309 None:intergenic 35.0%
TGAAATAACAGACAGCCAAA+TGG - chr1.1:49868190-49868209 None:intergenic 35.0%
TGGTAAAACTTATACGATGG+AGG + chr1.1:49866589-49866608 MS.gene071653:intron 35.0%
TGTTCTTTGTTCCTGATATG+TGG + chr1.1:49869643-49869662 MS.gene071653:intron 35.0%
TGTTTCAAAGTTGAAGGAGA+AGG + chr1.1:49869298-49869317 MS.gene071653:CDS 35.0%
TTCTTGCAGATCACAAAGAA+AGG + chr1.1:49869829-49869848 MS.gene071653:intron 35.0%
TTTGTTGAAGGACTTGTACT+TGG + chr1.1:49868481-49868500 MS.gene071653:CDS 35.0%
! AAAGGTAGTGTGTTGTTAAG+AGG + chr1.1:49866954-49866973 MS.gene071653:intron 35.0%
! ACCTTTTCCATCTTCCATAA+GGG - chr1.1:49866940-49866959 None:intergenic 35.0%
! CTTCTTTTCAGCTTCTTCTT+TGG - chr1.1:49868663-49868682 None:intergenic 35.0%
! GCTAGTTGTTTCAAAGTTGA+AGG + chr1.1:49869292-49869311 MS.gene071653:CDS 35.0%
! TACCTTTTCCATCTTCCATA+AGG - chr1.1:49866941-49866960 None:intergenic 35.0%
! TTCTAGAAAAAGTTGAGACG+TGG + chr1.1:49867731-49867750 MS.gene071653:intron 35.0%
! TTGTTGGCTATAGTATGCAT+TGG - chr1.1:49866325-49866344 None:intergenic 35.0%
!! AGAAACAGTAATTGGTGATG+AGG + chr1.1:49867204-49867223 MS.gene071653:CDS 35.0%
!! ATTTTTAAGGGTAATGGCAG+TGG - chr1.1:49868380-49868399 None:intergenic 35.0%
!! CTTGGTTTTTCTCCTGATTT+TGG + chr1.1:49867912-49867931 MS.gene071653:intron 35.0%
!! TTCAAAGGCTGTTTTGTTGA+AGG + chr1.1:49868469-49868488 MS.gene071653:CDS 35.0%
!! TTTTAAAAGGGCCACATATC+AGG - chr1.1:49869657-49869676 None:intergenic 35.0%
!!! TGTTTTAGTTTTCCCTCCTA+AGG - chr1.1:49868246-49868265 None:intergenic 35.0%
AAAACTTATACGATGGAGGG+TGG + chr1.1:49866593-49866612 MS.gene071653:intron 40.0%
AAACTTATACGATGGAGGGT+GGG + chr1.1:49866594-49866613 MS.gene071653:intron 40.0%
AAATGTCAACCAAAGGACTC+GGG - chr1.1:49868996-49869015 None:intergenic 40.0%
AACAGAGCAAGAACAGAAAC+TGG + chr1.1:49869109-49869128 MS.gene071653:CDS 40.0%
AACATCATATAACCGGTGGA+AGG - chr1.1:49866668-49866687 None:intergenic 40.0%
AACTGCACTGTCTTTGCTTA+TGG + chr1.1:49866553-49866572 MS.gene071653:CDS 40.0%
AGATCACAAAGAAAGGATGG+AGG + chr1.1:49869836-49869855 MS.gene071653:intron 40.0%
AGATCATGGCAATTCATTGC+TGG - chr1.1:49869257-49869276 None:intergenic 40.0%
ATACTTTCTGACTGAGGTTG+AGG - chr1.1:49868971-49868990 None:intergenic 40.0%
ATCTATACTCTGTTGGAACG+AGG + chr1.1:49867011-49867030 MS.gene071653:intron 40.0%
CATTGCTTAACAAGAGAAGC+AGG + chr1.1:49867060-49867079 MS.gene071653:CDS 40.0%
GAACATAAAAAAGGGCAACC+CGG - chr1.1:49869628-49869647 None:intergenic 40.0%
GCAAGAACAGAAACTGGATT+TGG + chr1.1:49869115-49869134 MS.gene071653:CDS 40.0%
GCCAAATGGCATGCATATTA+AGG - chr1.1:49868176-49868195 None:intergenic 40.0%
GGATTGCAAGGTGCATAAAA+TGG + chr1.1:49869151-49869170 MS.gene071653:intron 40.0%
TAGTCCGTCTGCTTATTGTT+TGG + chr1.1:49868283-49868302 MS.gene071653:CDS 40.0%
TCTTTGCTTATGGAACAGAC+CGG + chr1.1:49866563-49866582 MS.gene071653:CDS 40.0%
TGACAATTGGGGAAATTGCT+TGG - chr1.1:49866513-49866532 None:intergenic 40.0%
TGCAGATCACAAAGAAAGGA+TGG + chr1.1:49869833-49869852 MS.gene071653:intron 40.0%
TGCTCTACTAGCATAGTCTA+GGG - chr1.1:49868324-49868343 None:intergenic 40.0%
TTCGTATGCACAAGCACAAT+AGG - chr1.1:49869022-49869041 None:intergenic 40.0%
TTGCTCTACTAGCATAGTCT+AGG - chr1.1:49868325-49868344 None:intergenic 40.0%
TTGTCAATGAAGTTCTCGAC+GGG + chr1.1:49866527-49866546 MS.gene071653:CDS 40.0%
TTTGTGCAGTCGTTCACATT+CGG + chr1.1:49867156-49867175 MS.gene071653:intron 40.0%
! CGTATAAGTTTTACCAGTCC+CGG - chr1.1:49866585-49866604 None:intergenic 40.0%
! GATGAGGAGTTGATTAAGTG+TGG + chr1.1:49867220-49867239 MS.gene071653:CDS 40.0%
! GTTTTATCAACCCTTCATGC+AGG + chr1.1:49868911-49868930 MS.gene071653:intron 40.0%
! TTAATCTTGTTGATTGGGGC+TGG + chr1.1:49867248-49867267 MS.gene071653:intron 40.0%
!! GATGCATGTTCTAGCTTTCT+TGG + chr1.1:49868856-49868875 MS.gene071653:intron 40.0%
AAACAAGAGCTTACTCACCC+TGG + chr1.1:49868050-49868069 MS.gene071653:CDS 45.0%
AACAAGAGAAGCAGGTAGCT+AGG + chr1.1:49867068-49867087 MS.gene071653:intron 45.0%
AACAAGAGCTTACTCACCCT+GGG + chr1.1:49868051-49868070 MS.gene071653:CDS 45.0%
AATGTCAACCAAAGGACTCG+GGG - chr1.1:49868995-49869014 None:intergenic 45.0%
ATCAACCCTTCATGCAGGAA+AGG + chr1.1:49868916-49868935 MS.gene071653:intron 45.0%
ATGCGAGCTTAAGGATTGCA+AGG + chr1.1:49869139-49869158 MS.gene071653:CDS 45.0%
ATTCTGCGCATGTACCTTAC+AGG + chr1.1:49868101-49868120 MS.gene071653:CDS 45.0%
CACTCTTTCTTCAATAGGCC+TGG - chr1.1:49866904-49866923 None:intergenic 45.0%
CTTTGCTTATGGAACAGACC+GGG + chr1.1:49866564-49866583 MS.gene071653:CDS 45.0%
GAAGAAACCTGTAGCCCTTA+TGG + chr1.1:49866923-49866942 MS.gene071653:CDS 45.0%
GAGACTCGAGACAAAGAAAG+AGG - chr1.1:49867939-49867958 None:intergenic 45.0%
GCATTTATCTACACGTCCCA+GGG - chr1.1:49868070-49868089 None:intergenic 45.0%
GCCCTTATGGAAGATGGAAA+AGG + chr1.1:49866936-49866955 MS.gene071653:CDS 45.0%
GCTCTGTTAAGTAGAGCTCA+CGG - chr1.1:49869097-49869116 None:intergenic 45.0%
GGCTGCAAAGGAAATGTGTA+CGG + chr1.1:49869455-49869474 MS.gene071653:CDS 45.0%
TCACTCCTTTCCTGCATGAA+GGG - chr1.1:49868924-49868943 None:intergenic 45.0%
TTCCTTTGCAGCCTCAATCA+AGG - chr1.1:49869448-49869467 None:intergenic 45.0%
! AAAGTATTCCCCGAGTCCTT+TGG + chr1.1:49868984-49869003 MS.gene071653:intron 45.0%
! GGATTTGGAATGCGAGCTTA+AGG + chr1.1:49869130-49869149 MS.gene071653:CDS 45.0%
CCATCTTCCATAAGGGCTAC+AGG - chr1.1:49866933-49866952 None:intergenic 50.0%
CCTGTAGCCCTTATGGAAGA+TGG + chr1.1:49866930-49866949 MS.gene071653:CDS 50.0%
CGACTCACATTTCCTTCCAC+CGG + chr1.1:49866653-49866672 MS.gene071653:intron 50.0%
CGCATTTATCTACACGTCCC+AGG - chr1.1:49868071-49868090 None:intergenic 50.0%
CGGGGAATACTTTCTGACTG+AGG - chr1.1:49868977-49868996 None:intergenic 50.0%
CGTGTAGATAAATGCGCTCG+TGG + chr1.1:49868075-49868094 MS.gene071653:CDS 50.0%
CTCACTCCTTTCCTGCATGA+AGG - chr1.1:49868925-49868944 None:intergenic 50.0%
CTCCAGAAGACAGTTCTACC+AGG + chr1.1:49866883-49866902 MS.gene071653:CDS 50.0%
GGGTGGTGATTTAACTGCTG+AGG + chr1.1:49866739-49866758 MS.gene071653:intron 50.0%
GGTGATTTAACTGCTGAGGC+TGG + chr1.1:49866743-49866762 MS.gene071653:intron 50.0%
TGCCTTGATTGAGGCTGCAA+AGG + chr1.1:49869443-49869462 MS.gene071653:CDS 50.0%
TGGAGGGTGGGATGAGAATA+AGG + chr1.1:49866606-49866625 MS.gene071653:intron 50.0%
! TGCTTTTACCTCACGTGCTC+CGG - chr1.1:49867294-49867313 None:intergenic 50.0%
!! TGGAACGAGGAGCATCAAAG+AGG + chr1.1:49867024-49867043 MS.gene071653:intron 50.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1.1:49869602-49869621 None:intergenic 55.0%
ATGCAGATGTACGAGCAGCG+AGG + chr1.1:49868601-49868620 MS.gene071653:intron 55.0%
CGAGCAGCGAGGGAAAAGAA+TGG + chr1.1:49868612-49868631 MS.gene071653:CDS 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1.1:49869601-49869620 None:intergenic 55.0%
CTTATGGAACAGACCGGGAC+TGG + chr1.1:49866569-49866588 MS.gene071653:CDS 55.0%
GGCCTGGTAGAACTGTCTTC+TGG - chr1.1:49866888-49866907 None:intergenic 55.0%
TCTCCCCTGCTTCTCTAGCA+CGG - chr1.1:49868029-49868048 None:intergenic 55.0%
TGCAGATGTACGAGCAGCGA+GGG + chr1.1:49868602-49868621 MS.gene071653:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr1.1:49869606-49869625 MS.gene071653:intron 55.0%
ACTACGTTCCGGAGCACGTG+AGG + chr1.1:49867283-49867302 MS.gene071653:intron 60.0%
AGGGCCGTGCTAGAGAAGCA+GGG + chr1.1:49868022-49868041 MS.gene071653:intron 60.0%
CATACGCAGGGTCTGGGAAG+GGG - chr1.1:49869589-49869608 None:intergenic 60.0%
CTTCCCAGACCCTGCGTATG+CGG + chr1.1:49869589-49869608 MS.gene071653:intron 60.0%
GCATACGCAGGGTCTGGGAA+GGG - chr1.1:49869590-49869609 None:intergenic 60.0%
GGCAGTGGTAACTGACCCTC+AGG - chr1.1:49868365-49868384 None:intergenic 60.0%
TTCCCAGACCCTGCGTATGC+GGG + chr1.1:49869590-49869609 MS.gene071653:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr1.1:49869607-49869626 MS.gene071653:intron 60.0%
CAGGGCCGTGCTAGAGAAGC+AGG + chr1.1:49868021-49868040 MS.gene071653:intron 65.0%
CGCATACGCAGGGTCTGGGA+AGG - chr1.1:49869591-49869610 None:intergenic 65.0%
CTCCCGCATACGCAGGGTCT+GGG - chr1.1:49869595-49869614 None:intergenic 65.0%
GGGCCGTGCTAGAGAAGCAG+GGG + chr1.1:49868023-49868042 MS.gene071653:intron 65.0%
GCTCCCGCATACGCAGGGTC+TGG - chr1.1:49869596-49869615 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 49866325 49870001 49866325 ID=MS.gene071653
chr1.1 mRNA 49866325 49870001 49866325 ID=MS.gene071653.t1;Parent=MS.gene071653
chr1.1 exon 49866325 49866375 49866325 ID=MS.gene071653.t1.exon1;Parent=MS.gene071653.t1
chr1.1 CDS 49866325 49866375 49866325 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49866472 49866590 49866472 ID=MS.gene071653.t1.exon2;Parent=MS.gene071653.t1
chr1.1 CDS 49866472 49866590 49866472 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49866761 49866957 49866761 ID=MS.gene071653.t1.exon3;Parent=MS.gene071653.t1
chr1.1 CDS 49866761 49866957 49866761 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49867033 49867081 49867033 ID=MS.gene071653.t1.exon4;Parent=MS.gene071653.t1
chr1.1 CDS 49867033 49867081 49867033 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49867165 49867255 49867165 ID=MS.gene071653.t1.exon5;Parent=MS.gene071653.t1
chr1.1 CDS 49867165 49867255 49867165 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49868024 49868150 49868024 ID=MS.gene071653.t1.exon6;Parent=MS.gene071653.t1
chr1.1 CDS 49868024 49868150 49868024 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49868213 49868368 49868213 ID=MS.gene071653.t1.exon7;Parent=MS.gene071653.t1
chr1.1 CDS 49868213 49868368 49868213 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49868468 49868524 49868468 ID=MS.gene071653.t1.exon8;Parent=MS.gene071653.t1
chr1.1 CDS 49868468 49868524 49868468 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49868607 49868682 49868607 ID=MS.gene071653.t1.exon9;Parent=MS.gene071653.t1
chr1.1 CDS 49868607 49868682 49868607 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49868938 49868986 49868938 ID=MS.gene071653.t1.exon10;Parent=MS.gene071653.t1
chr1.1 CDS 49868938 49868986 49868938 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49869080 49869160 49869080 ID=MS.gene071653.t1.exon11;Parent=MS.gene071653.t1
chr1.1 CDS 49869080 49869160 49869080 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49869284 49869350 49869284 ID=MS.gene071653.t1.exon12;Parent=MS.gene071653.t1
chr1.1 CDS 49869284 49869350 49869284 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49869439 49869525 49869439 ID=MS.gene071653.t1.exon13;Parent=MS.gene071653.t1
chr1.1 CDS 49869439 49869525 49869439 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
chr1.1 exon 49869838 49870001 49869838 ID=MS.gene071653.t1.exon14;Parent=MS.gene071653.t1
chr1.1 CDS 49869838 49870001 49869838 ID=cds.MS.gene071653.t1;Parent=MS.gene071653.t1
Gene Sequence

>MS.gene071653

ATGCATACTATAGCCAACAAACAAGTAGAGAAAGTTTTCAATTTTGACAAGGTATGTCTTTTTTAAAGCTATCTTACTATGATACGGTGATCATAACAATATACTGTAATAATTGATTAACAATTGTTTTTGAATCTGTTTGGTAAGGTTTTCGGACCGAAATCACAACAGAGATCAATATACGACCAAGCAATTTCCCCAATTGTCAATGAAGTTCTCGACGGGTTTAACTGCACTGTCTTTGCTTATGGAACAGACCGGGACTGGTAAAACTTATACGATGGAGGGTGGGATGAGAATAAGGTATACATTTTGACATTTTGTGACTCGACTCACATTTCCTTCCACCGGTTATATGATGTTATGTTACTGATATTTTTTTTATCTTTACGCTTGCCGTGATTTATAAATATAGGGTGGTGATTTAACTGCTGAGGCTGGTGTTATTCCGAGAGCAGTTCGTCAAATTTTTTGATATTTTGGAAGAACAAAGTGCTGACTATAGCATGAAAGTCACATTTCTTGAGCTTTATAATGAAGAAATAACTGATCTGTTGTCTCCAGAAGACAGTTCTACCAGGCCTATTGAAGAAAGAGTGAAGAAACCTGTAGCCCTTATGGAAGATGGAAAAGGTAGTGTGTTGTTAAGAGGACTTGAAGAAGAATCGGTGTATAGTGTAAATGAAATCTATACTCTGTTGGAACGAGGAGCATCAAAGAGGCGTACTTCTGAGACATTGCTTAACAAGAGAAGCAGGTAGCTAGGTTTCTTTTTACTTTTGGTGTTGAAATTCATGTTAGTAGAAGCTATGTTTAACTTGATGAACGCGTTTTGTGCAGTCGTTCACATTCGGTGTTCACCATTACTGTCTATGTGAAAGAAACAGTAATTGGTGATGAGGAGTTGATTAAGTGTGGCAAGCTTAATCTTGTTGATTGGGGCTGGATCAGAAAATATACTACGTTCCGGAGCACGTGAGGTAAAAGCAAAATTTCTGATTTACTCTACTTTTGTTAATTTGCAAGGTAATTTGTCATTTGGCCAATAGCAAATCAGCTATATCACATATTCAAGTTAATCTTTTAGTGCATTGGAAATAATAATTACGTGTATTTGGATGTTCAGCTTAAGTGTTTATTCTTTAAACTATTTTAAGAGAAGTAAGAAGTATCATAAACTATTCTAAGAAACTCAGCTTAAGTGTTTATTCTGTAGACTATTCTAAGAAGTAAGAAGCATCATAAACTATTCTATGAAGTAAAATAAGAAGCATCATCAAACGCTTAAGCCCAATTTGATTAATTTTTGGCGTATATGAGCTTTTCAACTAAAACAAGCTTACAATATTTGCTTATGGAAAAGTCCATATAAGCTTATAGATGTTTATGAAGTTACATGGGAGAGATTCTAGAAAAAGTTGAGACGTGGAACTAATTTTAATTTGTGCTAGAACTTATTGTCCAAAATATACATAAGTATTGAAAGACTTTTTGATATTTACTTTCCTGCTATTTACAAGAAGTTTTATGACTAATGTTATTTTAGAGCAATCTGATGTTAGAAAGTGACATAAAATGCTTGTATAACTTGGTTTTTCTCCTGATTTTGGTCCTCTTTCTTTGTCTCGAGTCTCGACTATAAGTGAATTTAAATGGTAATGTTTGATCTTACAATACGTTTGCAACAATATGATTACAGGGCCGTGCTAGAGAAGCAGGGGAGATAAACAAGAGCTTACTCACCCTGGGACGTGTAGATAAATGCGCTCGTGGAGCATTCTGCGCATGTACCTTACAGGTTCATATTAACATGGTTTTCAATTATTGTTGGTTATTAAAATAATTGTACCTTAATATGCATGCCATTTGGCTGTCTGTTATTTCAGAGATAGTAAGCTTACAAGGATATTACGAGATTCCTTAGGAGGGAAAACTAAAACATGCATAATTGCTACTATTAGTCCGTCTGCTTATTGTTTGGAAGAAACACTAAGTACCCTAGACTATGCTAGTAGAGCAAAAAATATAAAGAATAAGCCTGAGGGTCAGTTACCACTGCCATTACCCTTAAAAATGTCATAACAGTAGTTTTTTGCTTTGTGCTGATAAAAGCTAATATTTTTCTAATAGGCAAACCAAAAAGTTTCAAAGGCTGTTTTGTTGAAGGACTTGTACTTGGAAATTGAGAGAATGAAAGAAGGTACCTTCACTTTTATTTAAGTTCTGGAACATAGAGAAGATCCTTGTATCATATTCTTTGTTCATGTGAATATTGAATGCAGATGTACGAGCAGCGAGGGAAAAGAATGGTGTATATATTTCGCATGAAGATTCGCCAAAGAAGAAGCTGAAAAGAAGGTCCTTTATTTGCTTTAGTATCTGCATATCTATATTACAATAATAGTATTATAACATTGTCGGAGGAAAGCAAAATCTCTGCATGAATACTTTCGATTAATTCTCATTGAATTGCTCTCTTTGCTTGACGAGATGTTTAAAATATAGTTTCACACTGAAAATTCCATATTTAGGATGCATGTTCTAGCTTTCTTGGTACTTATTTTAGATTTCCCTAGCTTAAGTTGTGTTTTATCAACCCTTCATGCAGGAAAGGAGTGAGAAGATAGATCAATTAGAGAATGACCTCAACCTCAGTCAGAAAGTATTCCCCGAGTCCTTTGGTTGACATTTATTCCTATTGTGCTTGTGCATACGAACTTCATTGATAAATTATTTCTTCCAATTTATTTTGCAGCAAGTAGACAATTTCCGTGAGCTCTACTTAACAGAGCAAGAACAGAAACTGGATTTGGAATGCGAGCTTAAGGATTGCAAGGTGCATAAAATGGATTTCTTTTTTCCTCCATAATTTCTTATTTAAAAAAGCATCTTATCAAATTAAATTACTCTTAGGTGAATTTTGAAAAAACCAGCAATGAATTGCCATGATCTTCAAGAGAATTACAGGCTAGTTGTTTCAAAGTTGAAGGAGAAGGAGTGCACCATTTCCAAACTACTGAAATCAGGTAAATCAATTGATGATATGCTACAAAGGTTGTATGCTGTTTTTGTTCAATGAACTAAATTATATGCTTTATTTTTGCTTGTGAACAGAAAATGCCTTGATTGAGGCTGCAAAGGAAATGTGTACGGATCTTCAGAATGCATCAGATGATATAAATTTTTTGTCATCTAAATTGGGTATGATTATTTTACTCTTCATTTTCCATCAATATGTTCTTTGTTCTTGATATGGTGGGACCCCTTCCCAGACCCTGCGTATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTTTATGTTCTTTGTTCCTGATATGTGGCCCTTTTAAAAGAAAATATGCTCATGGGACATGAAAATGAGTTTGAGCATATCCTCATCATGCGTTAATTGTTTTAGAAATTGGATATATGTGTCCCTTATTCATTTCCTTTCTAGATATTATTGCATTATTTCAACATGATATCTTGAATGAAAGTAAGTTCTTCTTGCAGATCACAAAGAAAGGATGGAGGCAGAAAACCAAAAAATAATCGTGAATTTTTCATCTCTCTTGAATGGGAGCTTGAAAGATTTGCATACAACCATTATAGGATCTATTTCTCAACAACAGAAACAACTAAATGCATGGAAGATCATGTTTGCTCTCATCTTGCCA
Protein sequence

>MS.gene071653.t1

MHTIANKQVEKVFNFDKVFGPKSQQRSIYDQAISPIVNEVLDGFNCTVFAYGTDRDWLVLFREQFVKFFDILEEQSADYSMKVTFLELYNEEITDLLSPEDSSTRPIEERVKKPVALMEDGKGASKRRTSETLLNKRSSRSHSVFTITVYVKETVIGDEELIKCGKLNLGRAREAGEINKSLLTLGRVDKCARGAFCACTLQVHINMVFNYYSKLTRILRDSLGGKTKTCIIATISPSAYCLEETLSTLDYASRAKNIKNKPEVSKAVLLKDLYLEIERMKEDVRAAREKNGVYISHEDSPKKKLKRRSEKIDQLENDLNLSQKQVDNFRELYLTEQEQKLDLECELKDCKNYRLVVSKLKEKECTISKLLKSENALIEAAKEMCTDLQNASDDINFLSSKLDHKERMEAENQKIIVNFSSLLNGSLKDLHTTIIGSISQQQKQLNAWKIMFALILP