AlfalfaGEDB | MS.gene049397

M. sativa cultivar XinJiangDaYe / MS.gene049397

KEGG: -
GO: -
PFAM: PF09739.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049397.t1	XP_013461517.1	97.6	591	14	0	1	591	1	591	0.00E+00	1146

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049397.t1	Q501D5	57.9	598	237	9	1	592	1	589	1.5e-186	654.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049397.t1	A0A072V141	97.6	591	14	0	1	591	1	591	0.0e+00	1146.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene04985	0.800939	1.14E-48	-1.69E-46
MS.gene049397	MS.gene049989	0.869706	2.53E-66	-1.69E-46
MS.gene049397	MS.gene050297	0.869239	3.59E-66	-1.69E-46
MS.gene049397	MS.gene050648	0.818478	1.92E-52	-1.69E-46
MS.gene049397	MS.gene051067	0.804844	1.78E-49	-1.69E-46
MS.gene049397	MS.gene051629	0.801804	7.58E-49	-1.69E-46
MS.gene049397	MS.gene052367	0.829564	4.80E-55	-1.69E-46
MS.gene049397	MS.gene053416	0.817528	3.15E-52	-1.69E-46
MS.gene049397	MS.gene053417	0.813541	2.43E-51	-1.69E-46
MS.gene049397	MS.gene055411	0.813518	2.46E-51	-1.69E-46

Showing 1 to 10 of 202 entries

Previous1 2 3 4 5…21Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene041425	MS.gene049397	PPI
MS.gene049397	MS.gene58754	PPI
MS.gene049397	MS.gene58234	PPI
MS.gene049397	MS.gene57751	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049397.t1	MTR_3g094070	97.631	591	14	0	1	591	1	591	0.0	1196

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049397.t1	AT2G40550	57.860	598	237	9	1	592	1	589	0.0	687

Showing 1 to 1 of 1 entries

Previous1Next

Find 157 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTATGATACAAAT+AGG	0.355812	3.1:-75206704	MS.gene049397:intron
AAATGTAATGGAGTTGCAAA+AGG	0.494363	3.1:-75206474	MS.gene049397:intron
AACCATTTGCTTGGAAGCTG+TGG	0.536958	3.1:-75206144	MS.gene049397:CDS
AACTCACGATTCACGATGGT+GGG	0.539632	3.1:-75209656	None:intergenic
AAGAACAGCATACCTTGGAT+AGG	0.585323	3.1:+75207068	None:intergenic
AAGCAGAAGCTTTGGAAGCT+TGG	0.402078	3.1:-75206121	MS.gene049397:CDS
AAGCTTTGGAAGCTTGGAGG+TGG	0.559758	3.1:-75206115	MS.gene049397:CDS
AATACTCTTGTTCGGTTTCG+TGG	0.391919	3.1:-75209326	MS.gene049397:CDS
ACATTGCATACCCCTTACAG+TGG	0.700005	3.1:-75206757	MS.gene049397:CDS
ACGAAACCGAACAAGAGTAT+TGG	0.490164	3.1:+75209328	None:intergenic

Showing 1 to 10 of 157 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTTGGTATGTGTTTC+AGG	-	chr3.1:75208732-75208751	MS.gene049397:intron	30.0%
AACCCTAATTATGCTTCATT+AGG	-	chr3.1:75205630-75205649	MS.gene049397:CDS	30.0%
AAGGTTGCTGAAAAATGTAA+TGG	-	chr3.1:75208534-75208553	MS.gene049397:CDS	30.0%
AATGCATAAATCACATGTGT+AGG	+	chr3.1:75208055-75208074	None:intergenic	30.0%
AATTATTCACATTTCTCTCG+AGG	+	chr3.1:75206346-75206365	None:intergenic	30.0%
ACAAGGAATGAACTCAATTA+AGG	+	chr3.1:75206314-75206333	None:intergenic	30.0%
AGCAAGAAATTCAAACAAGA+TGG	+	chr3.1:75205790-75205809	None:intergenic	30.0%
AGTTAAATGTGCGTAATAGT+TGG	-	chr3.1:75206944-75206963	MS.gene049397:intron	30.0%
ATAAACTGGAAAAATACCAC+TGG	+	chr3.1:75206923-75206942	None:intergenic	30.0%
ATGTATATTGAAGGATGGTT+CGG	-	chr3.1:75205844-75205863	MS.gene049397:intron	30.0%

Showing 1 to 10 of 317 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	75205379	75209663	75205379	ID=MS.gene049397
chr3.1	mRNA	75205379	75209663	75205379	ID=MS.gene049397.t1;Parent=MS.gene049397
chr3.1	exon	75209496	75209663	75209496	ID=MS.gene049397.t1.exon1;Parent=MS.gene049397.t1
chr3.1	CDS	75209496	75209663	75209496	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75209277	75209390	75209277	ID=MS.gene049397.t1.exon2;Parent=MS.gene049397.t1
chr3.1	CDS	75209277	75209390	75209277	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75209072	75209185	75209072	ID=MS.gene049397.t1.exon3;Parent=MS.gene049397.t1
chr3.1	CDS	75209072	75209185	75209072	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75208748	75208873	75208748	ID=MS.gene049397.t1.exon4;Parent=MS.gene049397.t1
chr3.1	CDS	75208748	75208873	75208748	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75208514	75208558	75208514	ID=MS.gene049397.t1.exon5;Parent=MS.gene049397.t1
chr3.1	CDS	75208514	75208558	75208514	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75207842	75207961	75207842	ID=MS.gene049397.t1.exon6;Parent=MS.gene049397.t1
chr3.1	CDS	75207842	75207961	75207842	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75207556	75207711	75207556	ID=MS.gene049397.t1.exon7;Parent=MS.gene049397.t1
chr3.1	CDS	75207556	75207711	75207556	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75207319	75207393	75207319	ID=MS.gene049397.t1.exon8;Parent=MS.gene049397.t1
chr3.1	CDS	75207319	75207393	75207319	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75207081	75207194	75207081	ID=MS.gene049397.t1.exon9;Parent=MS.gene049397.t1
chr3.1	CDS	75207081	75207194	75207081	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75206705	75206904	75206705	ID=MS.gene049397.t1.exon10;Parent=MS.gene049397.t1
chr3.1	CDS	75206705	75206904	75206705	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75206475	75206610	75206475	ID=MS.gene049397.t1.exon11;Parent=MS.gene049397.t1
chr3.1	CDS	75206475	75206610	75206475	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75206061	75206288	75206061	ID=MS.gene049397.t1.exon12;Parent=MS.gene049397.t1
chr3.1	CDS	75206061	75206288	75206061	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75205583	75205650	75205583	ID=MS.gene049397.t1.exon13;Parent=MS.gene049397.t1
chr3.1	CDS	75205583	75205650	75205583	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1
chr3.1	exon	75205379	75205493	75205379	ID=MS.gene049397.t1.exon14;Parent=MS.gene049397.t1
chr3.1	CDS	75205379	75205493	75205379	ID=cds.MS.gene049397.t1;Parent=MS.gene049397.t1

Gene Sequence

>MS.gene049397

ATGGTGGGCCCACAGTACGATCTCCTCGCCAACCCACTCGGTGCGGTCAGATCCACCTTCGACGCCGCCATAGCCACCGGTTCCGATCCCACTTCTTTAAACAACCGCGACTGGGGCGTCATCGATCTCTTCCGCAACCTTCTCTCCGACCAATCACATCTCTCTCAGGTAATAACAAACAACCTTCACTCTCTTCTCTTGAACCACTTCAAATCACATCAAACCCTAATTATTAGTTAAACTCTAATCAAAACCCTAATTATGCTTCATTAGGTTCCGCTTCTCACACCAGCCACTATCAGATACGTGAAACCCAATACTCTTGTTCGGTTTCGTGGAATGATTCAGGATATGCTTGGAAATGAATTTTATGTTGGCGCTTTTAAGGTAGTTTTTCTGTTCATCTCTCCATCTTGTTTGAATTTCTTGCTTAATTCAAAAATAGAGTTAATTTTGGTTATGTCAATGTATATTGAAGGATGGTTCGGTGTGGAGGACCAATAAATTTACGGATTTTTCTCAACATTCCATCCCTGTCGGTTGCTCTGCTGATACGCCTATTTGGGAACGGAGATTGCTTTACTGTGTTCCGGTGAGCTGTCCATTTCTCGTCGCTCTAATGTTTTCTTGAGTCGTGTTATGTTTCTTTCATATATTTTAGGGACTACTTAATACATGTATGTACTTTCATTACTAAATTGGAAAGAGATGGATAATTTAGTGGTAAGTTGATGATTTATTTTAAATTGAATAATAGTGTTTCCAAGGTTTAACAGTTGTTTATGCATAGGTTCCGGGACTGAATTCGTGGGCAGAACCTTCAGCAGAAGCAGTTGGCAATCCATCTATGGATTGGACATCTGAGCAAAGAGAAAAGAGGAGGAGAGGAGATGAAGAGTCTTCTTCTAACATGCCTGTAATTTCTTCCTTGCCCTTAATTGAGTTCATTCCTTGTTTCTTTGTGCCTCGAGAGAAATGTGAATAATTTGTACCTTTACCAAGTCATTTTGTTGGATTTCATTATGATTTTGATAACACTATACACTGTGAGTAATGTGTGTTCATTCAGCTTTTTTAATTTTTAATGACATTTATTTATTCACAGGTTGAGGGTGATGAGGTCGAAGGTTCTCCTAATACTAAAAGAATGGTATGAATGGCTTTCACCCAACTCCAATTGTGTTATGAATTTGATTGACTGGAAAGAATCATCCTAGAATAATATATTAGTATCTTTTGTTTAGATTTGTTAGAAATTATGGCTGATATTTTGCTCAAGGTTTATTTTTCAATTCCAATCAAGTCCATCCAAACCAAGATATTTGTTATCCATAATTTTTATGTCCATAGACCCTCAAGTCGTCAGTACCCTATTTAGTTTACCAGTTTTATTTATGAAATCATTAACAGTTTCTTTAGTATTCTATTTAGTTTAGGAGTTCTGGACTTGTTATGAAGTCTTGAACAGCTTTTAGGAGTTCTGGACTTGTTATGAAGTCTTGAACAGCTTATGAGTTGTACTGAATAACTGACTCATAGGTCCAGTGGTATTTTTCCAGTTTATAAGTTAAATGTGCGTAATAGTTGGTTTATTTTTTATTACTACCTCCATGTGTTGGAATCGTCAAAACTACTTGAGTTTGATGATTGGTGCAACCTTCTATTCTGTTCTTTTAAGAATTGGTGTCTCTTACTTTTACAGAGAGAAGGTGAATGCATTTCCCCTGCCTCTCAGTCTCAGGGAGCTGTACCTGAGATCGCTGGCTCTAGTATGAGTTTATTGTCTGGTCTCAATTGCAACTCATCTAGTTGTATTGTAAAGGTAAGATTTAGTCTCATCATTGTTTAGGATCTTATGAAATATATTTCGTTGACATGAGATTAACTTGTTTTTAATTTCATGGAATTATTATATCAAACCCATTTCCTCATTTTCCTCTGTACCATGCTAGGTATATGACACACCAGAGTCTGAACTGAAGCTGAATGACATTTTTGAGTTTGTGGGTATCCTTACATCTGATCCAGAGCTTCAGGAGGACAACGAAGATAGTGATTTATCAAATGGATTTGGTGAAGATCCCTTGCATCATTTCCCAGCTGACAAGGTATGATTCATCCCTTGAGGATACTTGATCAATGAGAATAGTATAAATGAAACTAGCATAAATGAAGCACAAATATGCAGCTGTATATTGTTTCTATGTCCTCACAGCACCTGGTTTATAAGTTTTAACATGTTTATTTGCATTTTACCCTCTAAATTGCAGGTACCACGCCTTCATTGTTTTATTCACAGGAAACTTTCAGTTCAGGACTTCCTTCAGAATAAGCCTATGATAGAGGTACCCACTCAAATGGATTTATTCATCTGAGCAAATGGCTCAAGTTTAGCAATTAGCGTCTTGAATTGGGATAATTCTTAACTTGAAAATACCTTGATAAGATAGCATGTGCTTGTTCTTACAGCCAAAACCTGACTTGGTCAAAGGCATCAGGGAGTCTCTCTTAAGACATCTCTCAGCTGTTCTAGGCAATGATGATGTAGCTGCTCATTTCATGTTGCTGCATCTCCTATCCAAGGTATGCTGTTCTTAATAGATCATTCCTTCCTATCTTTTCAAGCATTGTAAATGATCTCGGTATTGTTTGTCTCACATGTTTCTCTTTCCTCCTACACATGTGATTTATGCATTCTAATCCCATTGCCCTCCATTCTTGAGAATGTTTGTAATAAGGATTGATTTGCTTTTGACCAGGTGGAAGCCAGGGTAGATGCTCTTGCTGTGGGGAAGTTTTCTGTAAATTTTACTTGTTTTAGCAAAGAAACCGCGTCTATCGGAAAACAACTAAACCATGCTGTCAAGAACCTTGTGCCTTTCACACATTGCATACCCCTTACAGTGGAATACTTGAACACTGCTTCTCTTGCACCAAAAAAGAATTATGATACAAATAGGTACGAGATCATATTTGATAATCGTTCTGAATATTGACTTCTTAGTTCTTACTAGTACACAAATAAATTACAAGTTTTATTGTCAATGCTCCAGATTAGAAACTGGTGTCTTGCAACTAGCTGAAGGTTCACATTTGATTGTTGATGAGACACAATTAAAAGCTGGAACTCTCAATTCTGTGGGTGTAGAGAATGCAAGGTTGCTGAAAAATGTAATGGAGTTGCAAAAGGTAACTTTCTGCTTGTCTAGCTCTCCTTTCTTTTTGGATGGTTGTGTGTTCTATTATGCTATATGAATCTTACTTTCTTTTCACTTGGAACAATTTTTTCTTGTTGAAAAACACTATTTTCCATTTTCTATTGATTGTTTACAATTATTTTCAAAGTTAATGACAAACATTTGGTATGTGTTTCAGGTGGAATATGATTTCAAGTACTACAAGATGGAAATGGCAACTGATGTCCAACTGTTAGTTTTGTCTGAGGGGAAATCAAATATCTTACCAGCTGATGTAATTGTACCTATCCGGCCTTCTGCAACCATTTGCTTGGAAGCTGTGGAAGCAGAAGCTTTGGAAGCTTGGAGGTGGTATTTAGCTACTGTTAGACAACTGCCACACTCTTTTGAATCAGAAACTCAGCAGGTATGAGTGATGCTAGTAACAGTTTTCATAAACTAAGGTTGTTTAAGGTTAAATTGAACCAGTTAAAGATTTTTAGGTTACCTGCCTTACTCTTAGCATACAAACTCAGGAACTGACTAATTTCAAAGTTGGGCAGAAGTGGCATTTTAAATTTGATTTTTACATCATCCACTTCAACCTATACATGCATAGCTTAAAACAAGCACGTGATTCACTAGTATTTCCAATATATTCCTGGGAGCTTATAGTTTGCATTACTGTTGCAATTTACAAATTCCTCTTTGCTGATTTCTCTAGTTCCATCATTATTATTTGTAAACACCATTTTTCTTAATGAATACATCTCAAGCATACTTAGTCTTTTTGGCGAGAATGCATTATAAGCCTTTGCACTGTTTTGGGTGTTCCAGGTGGTAGAAAGTGATTTAGTTGCCGCAATACAAGCAGATAGGAGTTTGAATACCCAAGATTTAAGCAGGTTGGTGATTGACTATATTACATGTCTTGTAGCATTTTGTTCTCAGCCTTTCTTCCCTGACCTTTTGTTGCCCTACCTTCTCTGAACAGATTGGTAACAATGGGTCGCCTCATGTGTTTAAGCTTTGGTGAGACCACCCTGTCACTAGAACATTGGCGAATGACCAAGGAATTGGAGAGACTCCGCAGAGAGAGGTTAAAGTGA

Protein sequence

>MS.gene049397.t1

MVGPQYDLLANPLGAVRSTFDAAIATGSDPTSLNNRDWGVIDLFRNLLSDQSHLSQVPLLTPATIRYVKPNTLVRFRGMIQDMLGNEFYVGAFKDGSVWRTNKFTDFSQHSIPVGCSADTPIWERRLLYCVPVPGLNSWAEPSAEAVGNPSMDWTSEQREKRRRGDEESSSNMPVEGDEVEGSPNTKRMREGECISPASQSQGAVPEIAGSSMSLLSGLNCNSSSCIVKVYDTPESELKLNDIFEFVGILTSDPELQEDNEDSDLSNGFGEDPLHHFPADKVPRLHCFIHRKLSVQDFLQNKPMIEPKPDLVKGIRESLLRHLSAVLGNDDVAAHFMLLHLLSKVEARVDALAVGKFSVNFTCFSKETASIGKQLNHAVKNLVPFTHCIPLTVEYLNTASLAPKKNYDTNRLETGVLQLAEGSHLIVDETQLKAGTLNSVGVENARLLKNVMELQKVEYDFKYYKMEMATDVQLLVLSEGKSNILPADVIVPIRPSATICLEAVEAEALEAWRWYLATVRQLPHSFESETQQVVESDLVAAIQADRSLNTQDLSRLVTMGRLMCLSFGETTLSLEHWRMTKELERLRRERLK