Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071687.t1 | XP_003606407.1 | 93.5 | 200 | 13 | 0 | 1 | 200 | 1 | 200 | 1.30E-107 | 399.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071687.t1 | P46421 | 47.0 | 198 | 101 | 3 | 3 | 198 | 5 | 200 | 1.7e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071687.t1 | G7JPE9 | 93.5 | 200 | 13 | 0 | 1 | 200 | 1 | 200 | 9.3e-108 | 399.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051366 | MS.gene071687 | 0.800299 | 1.54E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071687.t1 | MTR_4g059730 | 93.500 | 200 | 13 | 0 | 1 | 200 | 1 | 200 | 1.97e-139 | 388 |
| MS.gene071687.t1 | MTR_1g090060 | 69.543 | 197 | 60 | 0 | 4 | 200 | 3 | 199 | 8.70e-103 | 296 |
| MS.gene071687.t1 | MTR_1g090100 | 69.072 | 194 | 60 | 0 | 5 | 198 | 3 | 196 | 8.35e-99 | 286 |
| MS.gene071687.t1 | MTR_1g090070 | 65.657 | 198 | 67 | 1 | 4 | 200 | 9 | 206 | 2.46e-95 | 277 |
| MS.gene071687.t1 | MTR_1g090090 | 66.497 | 197 | 66 | 0 | 4 | 200 | 3 | 199 | 2.94e-94 | 274 |
| MS.gene071687.t1 | MTR_1g115195 | 49.010 | 202 | 99 | 3 | 1 | 200 | 1 | 200 | 2.39e-61 | 191 |
| MS.gene071687.t1 | MTR_1g090150 | 47.959 | 196 | 101 | 1 | 3 | 198 | 2 | 196 | 1.80e-60 | 189 |
| MS.gene071687.t1 | MTR_4g019790 | 45.960 | 198 | 103 | 2 | 4 | 200 | 7 | 201 | 1.96e-57 | 181 |
| MS.gene071687.t1 | MTR_4g019780 | 46.231 | 199 | 103 | 3 | 3 | 200 | 7 | 202 | 2.62e-55 | 175 |
| MS.gene071687.t1 | MTR_7g065740 | 44.500 | 200 | 106 | 2 | 3 | 200 | 6 | 202 | 8.91e-55 | 174 |
| MS.gene071687.t1 | MTR_7g065660 | 46.231 | 199 | 103 | 2 | 3 | 200 | 6 | 201 | 1.47e-54 | 174 |
| MS.gene071687.t1 | MTR_7g065230 | 45.729 | 199 | 99 | 3 | 3 | 200 | 6 | 196 | 1.94e-53 | 171 |
| MS.gene071687.t1 | MTR_3g099757 | 45.226 | 199 | 105 | 3 | 3 | 200 | 4 | 199 | 6.56e-52 | 167 |
| MS.gene071687.t1 | MTR_7g065720 | 44.000 | 200 | 107 | 2 | 3 | 200 | 6 | 202 | 7.84e-52 | 167 |
| MS.gene071687.t1 | MTR_8g087425 | 46.269 | 201 | 102 | 2 | 2 | 200 | 3 | 199 | 3.09e-51 | 165 |
| MS.gene071687.t1 | MTR_7g065750 | 42.000 | 200 | 111 | 2 | 3 | 200 | 6 | 202 | 7.23e-51 | 164 |
| MS.gene071687.t1 | MTR_8g087410 | 48.792 | 207 | 95 | 6 | 1 | 202 | 2 | 202 | 1.25e-50 | 164 |
| MS.gene071687.t1 | MTR_2g070120 | 45.503 | 189 | 98 | 3 | 1 | 188 | 1 | 185 | 1.82e-50 | 163 |
| MS.gene071687.t1 | MTR_5g040430 | 43.204 | 206 | 111 | 4 | 2 | 202 | 5 | 209 | 4.44e-50 | 162 |
| MS.gene071687.t1 | MTR_7g065590 | 41.000 | 200 | 112 | 3 | 3 | 200 | 6 | 201 | 2.50e-49 | 160 |
| MS.gene071687.t1 | MTR_6g080440 | 46.893 | 177 | 88 | 3 | 18 | 192 | 17 | 189 | 1.32e-48 | 158 |
| MS.gene071687.t1 | MTR_7g065710 | 42.857 | 203 | 106 | 4 | 1 | 201 | 1 | 195 | 3.00e-48 | 157 |
| MS.gene071687.t1 | MTR_2g070150 | 45.050 | 202 | 104 | 4 | 1 | 200 | 1 | 197 | 5.26e-48 | 156 |
| MS.gene071687.t1 | MTR_7g065270 | 42.000 | 200 | 110 | 4 | 3 | 200 | 6 | 201 | 6.31e-48 | 157 |
| MS.gene071687.t1 | MTR_7g065600 | 39.698 | 199 | 116 | 2 | 3 | 200 | 6 | 201 | 1.66e-47 | 155 |
| MS.gene071687.t1 | MTR_7g065630 | 41.500 | 200 | 109 | 3 | 3 | 201 | 24 | 216 | 1.91e-47 | 156 |
| MS.gene071687.t1 | MTR_2g070200 | 44.175 | 206 | 107 | 5 | 1 | 203 | 1 | 201 | 3.01e-47 | 155 |
| MS.gene071687.t1 | MTR_7g065700 | 43.069 | 202 | 107 | 3 | 1 | 201 | 4 | 198 | 3.58e-47 | 155 |
| MS.gene071687.t1 | MTR_8g061950 | 44.776 | 201 | 103 | 6 | 5 | 198 | 6 | 205 | 3.64e-47 | 155 |
| MS.gene071687.t1 | MTR_7g065640 | 41.709 | 199 | 94 | 3 | 3 | 200 | 6 | 183 | 9.49e-46 | 150 |
| MS.gene071687.t1 | MTR_7g065260 | 43.564 | 202 | 108 | 4 | 3 | 202 | 13 | 210 | 1.07e-45 | 151 |
| MS.gene071687.t1 | MTR_2g070130 | 43.386 | 189 | 102 | 3 | 1 | 188 | 1 | 185 | 5.19e-45 | 149 |
| MS.gene071687.t1 | MTR_7g065290 | 39.196 | 199 | 117 | 2 | 3 | 200 | 6 | 201 | 1.04e-44 | 148 |
| MS.gene071687.t1 | MTR_7g065265 | 40.201 | 199 | 115 | 2 | 3 | 200 | 6 | 201 | 2.58e-44 | 147 |
| MS.gene071687.t1 | MTR_2g070180 | 49.057 | 159 | 78 | 2 | 1 | 158 | 1 | 157 | 3.02e-44 | 147 |
| MS.gene071687.t1 | MTR_8g056940 | 42.564 | 195 | 107 | 3 | 1 | 194 | 1 | 191 | 1.38e-42 | 143 |
| MS.gene071687.t1 | MTR_2g070210 | 46.584 | 161 | 81 | 3 | 1 | 158 | 1 | 159 | 1.57e-42 | 142 |
| MS.gene071687.t1 | MTR_4g124130 | 44.737 | 190 | 99 | 4 | 1 | 188 | 1 | 186 | 5.83e-42 | 141 |
| MS.gene071687.t1 | MTR_7g065680 | 40.500 | 200 | 111 | 3 | 3 | 201 | 6 | 198 | 7.69e-42 | 141 |
| MS.gene071687.t1 | MTR_2g070140 | 44.086 | 186 | 97 | 4 | 17 | 200 | 1 | 181 | 3.87e-41 | 139 |
| MS.gene071687.t1 | MTR_3g467420 | 43.889 | 180 | 96 | 3 | 10 | 188 | 15 | 190 | 5.89e-41 | 139 |
| MS.gene071687.t1 | MTR_5g037380 | 38.350 | 206 | 121 | 3 | 3 | 202 | 4 | 209 | 2.15e-40 | 137 |
| MS.gene071687.t1 | MTR_3g467430 | 42.781 | 187 | 102 | 3 | 3 | 188 | 8 | 190 | 6.97e-40 | 136 |
| MS.gene071687.t1 | MTR_2g070070 | 42.857 | 189 | 103 | 3 | 1 | 188 | 1 | 185 | 3.13e-39 | 134 |
| MS.gene071687.t1 | MTR_2g070060 | 41.270 | 189 | 106 | 3 | 1 | 188 | 1 | 185 | 9.11e-39 | 133 |
| MS.gene071687.t1 | MTR_2g070110 | 43.455 | 191 | 98 | 5 | 1 | 188 | 1 | 184 | 1.13e-37 | 130 |
| MS.gene071687.t1 | MTR_0186s0030 | 46.324 | 136 | 72 | 1 | 1 | 135 | 1 | 136 | 1.10e-35 | 122 |
| MS.gene071687.t1 | MTR_5g076900 | 37.766 | 188 | 112 | 3 | 2 | 188 | 4 | 187 | 4.78e-35 | 123 |
| MS.gene071687.t1 | MTR_2g072120 | 60.714 | 56 | 21 | 1 | 48 | 102 | 2 | 57 | 2.27e-19 | 79.0 |
| MS.gene071687.t1 | MTR_5g037390 | 42.857 | 91 | 42 | 2 | 28 | 115 | 11 | 94 | 3.68e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071687.t1 | AT2G29450 | 46.465 | 198 | 102 | 3 | 3 | 198 | 5 | 200 | 4.30e-54 | 172 |
| MS.gene071687.t1 | AT3G09270 | 44.554 | 202 | 108 | 3 | 3 | 202 | 5 | 204 | 6.78e-54 | 172 |
| MS.gene071687.t1 | AT2G29490 | 45.685 | 197 | 104 | 2 | 3 | 198 | 6 | 200 | 3.98e-53 | 170 |
| MS.gene071687.t1 | AT1G10370 | 45.050 | 202 | 106 | 3 | 2 | 198 | 3 | 204 | 8.90e-52 | 167 |
| MS.gene071687.t1 | AT2G29460 | 44.221 | 199 | 108 | 2 | 3 | 200 | 6 | 202 | 1.42e-51 | 166 |
| MS.gene071687.t1 | AT2G29420 | 42.640 | 197 | 111 | 1 | 2 | 198 | 7 | 201 | 1.48e-51 | 166 |
| MS.gene071687.t1 | AT2G29470 | 43.500 | 200 | 109 | 3 | 3 | 200 | 6 | 203 | 2.62e-50 | 163 |
| MS.gene071687.t1 | AT2G29480 | 44.221 | 199 | 108 | 2 | 3 | 200 | 6 | 202 | 2.44e-49 | 160 |
| MS.gene071687.t1 | AT1G78340 | 45.198 | 177 | 94 | 2 | 1 | 176 | 1 | 175 | 5.50e-46 | 151 |
| MS.gene071687.t1 | AT1G10360 | 42.439 | 205 | 113 | 3 | 3 | 202 | 4 | 208 | 5.66e-46 | 152 |
| MS.gene071687.t1 | AT2G29440 | 41.117 | 197 | 113 | 2 | 3 | 198 | 5 | 199 | 6.69e-46 | 151 |
| MS.gene071687.t1 | AT1G74590 | 40.099 | 202 | 118 | 2 | 3 | 201 | 6 | 207 | 6.05e-45 | 149 |
| MS.gene071687.t1 | AT1G27130 | 42.132 | 197 | 108 | 4 | 3 | 193 | 5 | 201 | 6.18e-45 | 149 |
| MS.gene071687.t1 | AT1G17180 | 43.386 | 189 | 102 | 3 | 1 | 188 | 1 | 185 | 2.40e-44 | 147 |
| MS.gene071687.t1 | AT1G27140 | 42.929 | 198 | 106 | 4 | 3 | 193 | 5 | 202 | 1.98e-43 | 145 |
| MS.gene071687.t1 | AT1G78320 | 42.268 | 194 | 103 | 6 | 1 | 191 | 1 | 188 | 4.10e-43 | 144 |
| MS.gene071687.t1 | AT5G62480 | 37.264 | 212 | 118 | 5 | 1 | 201 | 5 | 212 | 7.84e-43 | 144 |
| MS.gene071687.t1 | AT1G59670 | 41.837 | 196 | 108 | 4 | 3 | 192 | 5 | 200 | 1.38e-42 | 143 |
| MS.gene071687.t1 | AT1G69930 | 38.660 | 194 | 115 | 3 | 3 | 192 | 11 | 204 | 9.78e-42 | 141 |
| MS.gene071687.t1 | AT1G78370 | 41.270 | 189 | 106 | 3 | 1 | 188 | 1 | 185 | 3.76e-41 | 139 |
| MS.gene071687.t1 | AT1G17170 | 45.912 | 159 | 82 | 3 | 1 | 158 | 1 | 156 | 1.63e-40 | 137 |
| MS.gene071687.t1 | AT1G59700 | 39.286 | 196 | 113 | 4 | 3 | 192 | 5 | 200 | 1.90e-40 | 138 |
| MS.gene071687.t1 | AT1G17190 | 39.572 | 187 | 108 | 3 | 3 | 188 | 4 | 186 | 8.13e-40 | 135 |
| MS.gene071687.t1 | AT1G78380 | 42.328 | 189 | 104 | 3 | 1 | 188 | 1 | 185 | 1.08e-39 | 135 |
| MS.gene071687.t1 | AT1G69920 | 37.436 | 195 | 116 | 4 | 5 | 193 | 35 | 229 | 2.96e-37 | 130 |
| MS.gene071687.t1 | AT1G53680 | 40.110 | 182 | 102 | 4 | 10 | 188 | 13 | 190 | 4.82e-36 | 126 |
| MS.gene071687.t1 | AT1G78360 | 43.750 | 160 | 86 | 3 | 1 | 158 | 1 | 158 | 1.40e-35 | 125 |
| MS.gene071687.t1 | AT3G43800 | 38.916 | 203 | 115 | 5 | 3 | 200 | 4 | 202 | 2.95e-34 | 122 |
| MS.gene071687.t1 | AT5G62480 | 30.622 | 209 | 105 | 5 | 3 | 201 | 7 | 185 | 8.19e-27 | 102 |
| MS.gene071687.t1 | AT5G62480 | 30.622 | 209 | 106 | 5 | 3 | 201 | 7 | 186 | 8.84e-27 | 102 |
| MS.gene071687.t1 | AT1G78320 | 34.211 | 190 | 91 | 6 | 1 | 188 | 1 | 158 | 1.40e-24 | 95.9 |
Find 38 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGCCCAAGCTCGGTTC+TGG | 0.280479 | 4.4:-44444305 | MS.gene071687:CDS |
| AGGAGACACCGTTAACATTC+TGG | 0.299490 | 4.4:-44443825 | MS.gene071687:CDS |
| AAGTGAAGCTACATGGATTT+TGG | 0.302285 | 4.4:-44444563 | MS.gene071687:CDS |
| AATACTACCCTCAAAGTAAA+AGG | 0.302524 | 4.4:+44444534 | None:intergenic |
| AGAATACCATAGCGAAAATC+TGG | 0.331408 | 4.4:-44443904 | MS.gene071687:CDS |
| GTATTGACCCTTAAGCTAAA+AGG | 0.363440 | 4.4:-44444516 | MS.gene071687:CDS |
| TTGAATACATTGATGAGATA+TGG | 0.380718 | 4.4:-44444362 | MS.gene071687:CDS |
| TCTTCTTCTATGTTCTCATA+TGG | 0.416671 | 4.4:+44444489 | None:intergenic |
| AACATTCTGGACATAGCTCT+TGG | 0.422694 | 4.4:-44443812 | MS.gene071687:CDS |
| AAAACTCCGGTGTTGGTTCA+TGG | 0.434187 | 4.4:-44444417 | MS.gene071687:CDS |
| AGCTATGTCCAGAATGTTAA+CGG | 0.440075 | 4.4:+44443817 | None:intergenic |
| GCTATCAGTTTCTCATGATC+AGG | 0.440168 | 4.4:+44443660 | None:intergenic |
| GCTCTCTCATAAGGATCAAC+AGG | 0.442610 | 4.4:+44444321 | None:intergenic |
| CGAGCTTGGGCTCTCTCATA+AGG | 0.459155 | 4.4:+44444312 | None:intergenic |
| AATTCCCTCACTTGCATGCA+TGG | 0.474769 | 4.4:-44443724 | MS.gene071687:CDS |
| TTCAAGAATGTACCTGTCAT+AGG | 0.475029 | 4.4:-44443692 | MS.gene071687:CDS |
| GAGAGCCCAAGCTCGGTTCT+GGG | 0.483641 | 4.4:-44444304 | MS.gene071687:CDS |
| GATTGTATTGAAGAAGTTGA+GGG | 0.534705 | 4.4:+44444451 | None:intergenic |
| TCAAACCATGCATGCAAGTG+AGG | 0.535813 | 4.4:+44443719 | None:intergenic |
| TAAGGATCAACAGGAAGCAA+AGG | 0.547066 | 4.4:+44444330 | None:intergenic |
| AAGGATCAACAGGAAGCAAA+GGG | 0.553758 | 4.4:+44444331 | None:intergenic |
| GCAGATCAAGTGAAGCTACA+TGG | 0.559561 | 4.4:-44444570 | MS.gene071687:CDS |
| GAGGGAATTTCTCAGCTGCT+AGG | 0.567585 | 4.4:+44443738 | None:intergenic |
| CAAACCATGCATGCAAGTGA+GGG | 0.568010 | 4.4:+44443720 | None:intergenic |
| GGATTGTATTGAAGAAGTTG+AGG | 0.571991 | 4.4:+44444450 | None:intergenic |
| GCACAAGAAAACTCCGGTGT+TGG | 0.576241 | 4.4:-44444424 | MS.gene071687:CDS |
| CTAACGAGTGCACCAACTGC+AGG | 0.579048 | 4.4:+44443950 | None:intergenic |
| GAATACCATAGCGAAAATCT+GGG | 0.582158 | 4.4:-44443903 | MS.gene071687:CDS |
| AGGAAGATTTCACCTATGAC+AGG | 0.599534 | 4.4:+44443680 | None:intergenic |
| GGTGCACTCGTTAGTAGCGG+TGG | 0.611355 | 4.4:-44443941 | MS.gene071687:CDS |
| CTTATGAGAGAGCCCAAGCT+CGG | 0.617875 | 4.4:-44444311 | MS.gene071687:CDS |
| TTTCCACCATGAACCAACAC+CGG | 0.639081 | 4.4:+44444411 | None:intergenic |
| ATGATCATAGACTCACATAG+AGG | 0.640551 | 4.4:+44444387 | None:intergenic |
| GTAGCGGTGGCGATGAAGAG+CGG | 0.649339 | 4.4:-44443928 | MS.gene071687:CDS |
| TCCAGTGCACAAGAAAACTC+CGG | 0.653047 | 4.4:-44444430 | MS.gene071687:CDS |
| ACTCCGGTGTTGGTTCATGG+TGG | 0.663999 | 4.4:-44444414 | MS.gene071687:CDS |
| GTTGGTGCACTCGTTAGTAG+CGG | 0.664719 | 4.4:-44443944 | MS.gene071687:CDS |
| ACAGGAAGCAAAGGGTACTG+TGG | 0.666663 | 4.4:+44444339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATCAACATATTATTT+AGG | - | chr4.4:44444086-44444105 | MS.gene071687:intron | 10.0% |
| !! | TTATCATATTGAATAAATTT+AGG | + | chr4.4:44444223-44444242 | None:intergenic | 10.0% |
| !! | AATAATAATATTGTTGGATA+TGG | + | chr4.4:44444163-44444182 | None:intergenic | 15.0% |
| !!! | AAATTACTATTACTTTTTCA+TGG | + | chr4.4:44444023-44444042 | None:intergenic | 15.0% |
| ! | CTAAGAAAATTTGCAAATGA+AGG | + | chr4.4:44444125-44444144 | None:intergenic | 25.0% |
| ! | TTGAATACATTGATGAGATA+TGG | - | chr4.4:44443875-44443894 | MS.gene071687:CDS | 25.0% |
| AATACTACCCTCAAAGTAAA+AGG | + | chr4.4:44443706-44443725 | None:intergenic | 30.0% | |
| GATTGTATTGAAGAAGTTGA+GGG | + | chr4.4:44443789-44443808 | None:intergenic | 30.0% | |
| TCTTCTTCTATGTTCTCATA+TGG | + | chr4.4:44443751-44443770 | None:intergenic | 30.0% | |
| ! | GACTACAAGAAGAAACTTTT+TGG | - | chr4.4:44444389-44444408 | MS.gene071687:CDS | 30.0% |
| ! | TACAAGAAGAAACTTTTTGG+AGG | - | chr4.4:44444392-44444411 | MS.gene071687:CDS | 30.0% |
| ! | TTTTCATGGTATGCAAATGA+AGG | + | chr4.4:44444009-44444028 | None:intergenic | 30.0% |
| ! | TTTTTATAGATTCCTGCAGT+TGG | - | chr4.4:44444275-44444294 | MS.gene071687:intron | 30.0% |
| !!! | ATGGTATACCTTTTAGCTTA+AGG | + | chr4.4:44443732-44443751 | None:intergenic | 30.0% |
| !!! | TGGTATACCTTTTAGCTTAA+GGG | + | chr4.4:44443731-44443750 | None:intergenic | 30.0% |
| AGAATACCATAGCGAAAATC+TGG | - | chr4.4:44444333-44444352 | MS.gene071687:CDS | 35.0% | |
| AGCTATGTCCAGAATGTTAA+CGG | + | chr4.4:44444423-44444442 | None:intergenic | 35.0% | |
| ATGATCATAGACTCACATAG+AGG | + | chr4.4:44443853-44443872 | None:intergenic | 35.0% | |
| GAATACCATAGCGAAAATCT+GGG | - | chr4.4:44444334-44444353 | MS.gene071687:CDS | 35.0% | |
| GGATATGGTATCAACTATCA+AGG | + | chr4.4:44444148-44444167 | None:intergenic | 35.0% | |
| GGATTGTATTGAAGAAGTTG+AGG | + | chr4.4:44443790-44443809 | None:intergenic | 35.0% | |
| TTCAAGAATGTACCTGTCAT+AGG | - | chr4.4:44444545-44444564 | MS.gene071687:CDS | 35.0% | |
| ! | AAGTGAAGCTACATGGATTT+TGG | - | chr4.4:44443674-44443693 | MS.gene071687:CDS | 35.0% |
| ! | GTACAGTCCTTTTACTTTGA+GGG | - | chr4.4:44443696-44443715 | MS.gene071687:CDS | 35.0% |
| ! | GTATTGACCCTTAAGCTAAA+AGG | - | chr4.4:44443721-44443740 | MS.gene071687:CDS | 35.0% |
| AACATTCTGGACATAGCTCT+TGG | - | chr4.4:44444425-44444444 | MS.gene071687:CDS | 40.0% | |
| AAGGATCAACAGGAAGCAAA+GGG | + | chr4.4:44443909-44443928 | None:intergenic | 40.0% | |
| AGGAAGATTTCACCTATGAC+AGG | + | chr4.4:44444560-44444579 | None:intergenic | 40.0% | |
| TAAGGATCAACAGGAAGCAA+AGG | + | chr4.4:44443910-44443929 | None:intergenic | 40.0% | |
| ! | ATGTTCCCAGATTTTCGCTA+TGG | + | chr4.4:44444342-44444361 | None:intergenic | 40.0% |
| ! | GGTACAGTCCTTTTACTTTG+AGG | - | chr4.4:44443695-44443714 | MS.gene071687:CDS | 40.0% |
| AATTCCCTCACTTGCATGCA+TGG | - | chr4.4:44444513-44444532 | MS.gene071687:CDS | 45.0% | |
| AGGAGACACCGTTAACATTC+TGG | - | chr4.4:44444412-44444431 | MS.gene071687:CDS | 45.0% | |
| CAAACCATGCATGCAAGTGA+GGG | + | chr4.4:44444520-44444539 | None:intergenic | 45.0% | |
| GCAGATCAAGTGAAGCTACA+TGG | - | chr4.4:44443667-44443686 | MS.gene071687:CDS | 45.0% | |
| GCTCTCTCATAAGGATCAAC+AGG | + | chr4.4:44443919-44443938 | None:intergenic | 45.0% | |
| TCAAACCATGCATGCAAGTG+AGG | + | chr4.4:44444521-44444540 | None:intergenic | 45.0% | |
| TCCAGTGCACAAGAAAACTC+CGG | - | chr4.4:44443807-44443826 | MS.gene071687:CDS | 45.0% | |
| TTTCCACCATGAACCAACAC+CGG | + | chr4.4:44443829-44443848 | None:intergenic | 45.0% | |
| ! | ATTTTACCCAGAACCGAGCT+TGG | + | chr4.4:44443942-44443961 | None:intergenic | 45.0% |
| ! | TTTTACCCAGAACCGAGCTT+GGG | + | chr4.4:44443941-44443960 | None:intergenic | 45.0% |
| !! | AAAACTCCGGTGTTGGTTCA+TGG | - | chr4.4:44443820-44443839 | MS.gene071687:CDS | 45.0% |
| !! | AATAATAATAATAATATTGT+TGG | + | chr4.4:44444169-44444188 | None:intergenic | 5.0% |
| !! | AGTATTATAAATAATTTATT+GGG | - | chr4.4:44444248-44444267 | MS.gene071687:intron | 5.0% |
| !! | TAGTATTATAAATAATTTAT+TGG | - | chr4.4:44444247-44444266 | MS.gene071687:intron | 5.0% |
| CTTATGAGAGAGCCCAAGCT+CGG | - | chr4.4:44443926-44443945 | MS.gene071687:CDS | 50.0% | |
| GAGGGAATTTCTCAGCTGCT+AGG | + | chr4.4:44444502-44444521 | None:intergenic | 50.0% | |
| GCACAAGAAAACTCCGGTGT+TGG | - | chr4.4:44443813-44443832 | MS.gene071687:CDS | 50.0% | |
| GTTGGTGCACTCGTTAGTAG+CGG | - | chr4.4:44444293-44444312 | MS.gene071687:CDS | 50.0% | |
| ! | ACCGGAGTTTTCTTGTGCAC+TGG | + | chr4.4:44443811-44443830 | None:intergenic | 50.0% |
| !! | ACAGGAAGCAAAGGGTACTG+TGG | + | chr4.4:44443901-44443920 | None:intergenic | 50.0% |
| CGAGCTTGGGCTCTCTCATA+AGG | + | chr4.4:44443928-44443947 | None:intergenic | 55.0% | |
| CTAACGAGTGCACCAACTGC+AGG | + | chr4.4:44444290-44444309 | None:intergenic | 55.0% | |
| !! | ACTCCGGTGTTGGTTCATGG+TGG | - | chr4.4:44443823-44443842 | MS.gene071687:CDS | 55.0% |
| AGAGAGCCCAAGCTCGGTTC+TGG | - | chr4.4:44443932-44443951 | MS.gene071687:CDS | 60.0% | |
| GAGAGCCCAAGCTCGGTTCT+GGG | - | chr4.4:44443933-44443952 | MS.gene071687:CDS | 60.0% | |
| GGTGCACTCGTTAGTAGCGG+TGG | - | chr4.4:44444296-44444315 | MS.gene071687:CDS | 60.0% | |
| GTAGCGGTGGCGATGAAGAG+CGG | - | chr4.4:44444309-44444328 | MS.gene071687:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 44443664 | 44444595 | 44443664 | ID=MS.gene071687 |
| chr4.4 | mRNA | 44443664 | 44444595 | 44443664 | ID=MS.gene071687.t1;Parent=MS.gene071687 |
| chr4.4 | exon | 44444284 | 44444595 | 44444284 | ID=MS.gene071687.t1.exon1;Parent=MS.gene071687.t1 |
| chr4.4 | CDS | 44444284 | 44444595 | 44444284 | ID=cds.MS.gene071687.t1;Parent=MS.gene071687.t1 |
| chr4.4 | exon | 44443664 | 44443975 | 44443664 | ID=MS.gene071687.t1.exon2;Parent=MS.gene071687.t1 |
| chr4.4 | CDS | 44443664 | 44443975 | 44443664 | ID=cds.MS.gene071687.t1;Parent=MS.gene071687.t1 |
| Gene Sequence |
| Protein sequence |
