AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051366


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051366.t1 MTR_7g103870 95.479 376 9 3 12 386 1 369 0.0 724
MS.gene051366.t1 MTR_3g102400 28.966 290 163 10 66 331 41 311 3.43e-20 93.2
MS.gene051366.t1 MTR_3g031580 27.425 299 178 9 52 331 24 302 4.48e-18 86.7
MS.gene051366.t1 MTR_3g031490 26.645 304 181 9 53 331 22 308 6.90e-17 82.8
MS.gene051366.t1 MTR_3g031640 27.329 322 171 12 52 338 21 314 6.20e-16 80.1
MS.gene051366.t1 MTR_3g031610 28.571 315 162 13 52 331 21 307 6.29e-16 80.1
MS.gene051366.t1 MTR_7g072460 28.054 221 130 9 118 331 102 300 4.84e-15 76.6
MS.gene051366.t1 MTR_7g058830 24.695 328 210 10 24 331 5 315 1.62e-14 75.9
MS.gene051366.t1 MTR_3g031470 28.000 300 191 10 52 331 23 317 1.70e-14 75.5
MS.gene051366.t1 MTR_2g080080 27.500 320 200 13 23 330 11 310 4.07e-14 74.3
MS.gene051366.t1 MTR_7g053050 24.918 305 193 9 47 331 26 314 4.44e-14 74.3
MS.gene051366.t1 MTR_3g031600 27.070 314 168 11 52 331 21 307 9.27e-14 73.6
MS.gene051366.t1 MTR_7g092050 24.691 324 209 10 20 330 7 308 1.29e-13 72.8
MS.gene051366.t1 MTR_1g099400 23.856 306 184 15 98 369 66 356 2.88e-12 68.9
MS.gene051366.t1 MTR_2g080090 26.136 352 205 16 23 348 11 333 5.94e-12 67.8
MS.gene051366.t1 MTR_4g094858 24.415 299 191 8 54 331 30 314 1.39e-11 66.6
MS.gene051366.t1 MTR_2g080100 26.144 306 175 13 66 348 57 334 3.19e-11 65.5
MS.gene051366.t1 MTR_3g107070 26.829 287 181 10 66 340 34 303 4.04e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051366.t1 AT5G03700 52.199 341 138 8 46 385 37 353 4.13e-113 339
MS.gene051366.t1 AT5G24080 25.680 331 207 14 71 370 50 372 1.10e-13 73.2
MS.gene051366.t1 AT1G11280 23.077 299 199 9 50 331 26 310 2.52e-13 72.0
MS.gene051366.t1 AT1G11280 23.077 299 199 9 50 331 36 320 2.55e-13 72.0
MS.gene051366.t1 AT1G11280 23.077 299 199 9 50 331 36 320 2.66e-13 72.0
MS.gene051366.t1 AT1G11280 23.077 299 199 9 50 331 26 310 2.75e-13 72.0
MS.gene051366.t1 AT1G11280 23.077 299 199 9 50 331 26 310 3.20e-13 71.6
MS.gene051366.t1 AT1G61550 26.452 310 188 12 27 322 7 290 3.55e-12 68.6
MS.gene051366.t1 AT1G16905 29.960 247 130 12 98 321 89 315 1.15e-11 66.2
MS.gene051366.t1 AT1G34300 26.335 281 154 10 69 330 45 291 1.33e-11 66.6
MS.gene051366.t1 AT3G51710 27.039 233 137 9 107 331 103 310 2.53e-11 65.5
MS.gene051366.t1 AT1G61480 23.438 320 199 10 18 322 7 295 8.79e-11 64.3

Find 113 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCTCAAAGGGTATTAT+TGG 0.229085 7.3:+10192216 MS.gene051366:CDS
GGTGCTTACTCTTGCATAAA+TGG 0.242269 7.3:-10192084 None:intergenic
CCCTTTCCCTTGAACCACTA+TGG 0.283811 7.3:+10191640 MS.gene051366:CDS
AATCTCTACTCTTTACGTTT+AGG 0.299181 7.3:+10191930 MS.gene051366:CDS
ACGTAAAGAGTAGAGATTAT+TGG 0.315834 7.3:-10191925 None:intergenic
AGAAACTTCGTCGTTTCTTT+TGG 0.327593 7.3:+10192175 MS.gene051366:CDS
CGAGGGTATTTGTGGGGAAA+TGG 0.328710 7.3:-10191860 None:intergenic
GAAAATCACGACAAAGAAAA+AGG 0.336915 7.3:+10191975 MS.gene051366:CDS
CCATACGAACCACATGGATT+TGG 0.349570 7.3:-10192299 None:intergenic
CAGCAGGTTTAGAACTTGTT+TGG 0.369084 7.3:-10192127 None:intergenic
ACGTTTAGGTGACACTTTCA+TGG 0.378138 7.3:+10191944 MS.gene051366:CDS
TTGAATATTGTAGAAGCAAC+TGG 0.379851 7.3:-10191374 None:intergenic
GAATCTCAAAGGGTATTATT+GGG 0.385265 7.3:+10192217 MS.gene051366:CDS
GTAAGCACCGAGGGTTATAT+TGG 0.386812 7.3:+10192098 MS.gene051366:CDS
TAGGTTTGAACCGGGTGAAC+CGG 0.391695 7.3:+10192370 MS.gene051366:CDS
ACCAAGATACTGTGTGGGTT+GGG 0.401401 7.3:-10191671 None:intergenic
ATCTTGTACGAGGGTATTTG+TGG 0.411789 7.3:-10191868 None:intergenic
GCAAAATCTAAAATCATAGA+AGG 0.419839 7.3:+10192053 MS.gene051366:CDS
TAACAAAGCTAGGTTTGAAC+CGG 0.430362 7.3:+10192361 MS.gene051366:CDS
TTGAATTTCTGAACATCAGC+AGG 0.432916 7.3:-10192143 None:intergenic
TGGTGGATGTTGACCATGAT+AGG 0.433516 7.3:-10191752 None:intergenic
TGTTTGTACTAGTAAGTTTG+AGG 0.434494 7.3:-10191802 None:intergenic
CACAAGTTTCGCTAATAGCT+TGG 0.440991 7.3:-10192271 None:intergenic
CGTTTAGGTGACACTTTCAT+GGG 0.443125 7.3:+10191945 MS.gene051366:CDS
GAACCCGAGAGAGAAGTTTC+CGG 0.448425 7.3:-10191574 None:intergenic
ACCATGATAGGGTTCTTTGT+GGG 0.450423 7.3:-10191740 None:intergenic
ACCCAACCCACACAGTATCT+TGG 0.453874 7.3:+10191670 MS.gene051366:CDS
GTGCTTACTCTTGCATAAAT+GGG 0.460763 7.3:-10192083 None:intergenic
CCAAATCCATGTGGTTCGTA+TGG 0.462161 7.3:+10192299 MS.gene051366:CDS
GGGATTCAACAAAGTCTAGT+TGG 0.465277 7.3:+10192237 MS.gene051366:CDS
TACAAGATTCTGAGAAAGGT+TGG 0.478101 7.3:+10192467 MS.gene051366:CDS
TCCGGTAGGATCGGTGAGGA+TGG 0.479284 7.3:-10191556 None:intergenic
CTTGTTTAGATAACAAAGCT+AGG 0.482136 7.3:+10192351 MS.gene051366:CDS
GACCATGATAGGGTTCTTTG+TGG 0.482393 7.3:-10191741 None:intergenic
GACCAAGATACTGTGTGGGT+TGG 0.482474 7.3:-10191672 None:intergenic
GATTGTTGCAAAAGATGTTA+AGG 0.483421 7.3:-10191460 None:intergenic
AAGGTAGTTTGTTAACAAAA+CGG 0.484249 7.3:+10191994 MS.gene051366:CDS
AACCACGCGCTCACCGTTGG+TGG 0.488054 7.3:-10191769 None:intergenic
TAGTTACAAGATTCTGAGAA+AGG 0.492029 7.3:+10192463 MS.gene051366:CDS
TCCATAGTGGTTCAAGGGAA+AGG 0.497589 7.3:-10191641 None:intergenic
CAAGACTACCGTTGAAGAAG+AGG 0.498874 7.3:-10191707 None:intergenic
ATCGGTGAGGATGGGTTGAA+AGG 0.499686 7.3:-10191547 None:intergenic
TGGCCGTCCATAGTGGTTCA+AGG 0.506314 7.3:-10191647 None:intergenic
TTCGTATGGTTTGTGTACCC+CGG 0.508542 7.3:+10192313 MS.gene051366:CDS
TGGTTAGGTTAGAACAAGAC+GGG 0.512333 7.3:+10192195 MS.gene051366:CDS
AAGCCTTTGAGAAGCTCTTG+TGG 0.514091 7.3:-10191495 None:intergenic
GATGATGATGGTGATGGAGG+TGG 0.514144 7.3:+10192407 MS.gene051366:CDS
GAGGATGGGTTGAAAGGAGG+TGG 0.514601 7.3:-10191541 None:intergenic
CCGGTAGGATCGGTGAGGAT+GGG 0.515364 7.3:-10191555 None:intergenic
GAAGAAGAGGCGCGTGGTGT+GGG 0.517147 7.3:-10191694 None:intergenic
TTTGAGAAGCTCTTGTGGGA+TGG 0.521091 7.3:-10191490 None:intergenic
CCATAGTGGTTCAAGGGAAA+GGG 0.521431 7.3:-10191640 None:intergenic
GACTTGTGCAGTGGAGGGAT+TGG 0.523694 7.3:+10192431 MS.gene051366:CDS
CTACCGGAAACTTCTCTCTC+GGG 0.525044 7.3:+10191571 MS.gene051366:CDS
CCTACCGGAAACTTCTCTCT+CGG 0.525872 7.3:+10191570 MS.gene051366:CDS
TCTAAAATCATAGAAGGTGA+TGG 0.528671 7.3:+10192059 MS.gene051366:CDS
TTTAATGATGATGATGGTGA+TGG 0.529593 7.3:+10192401 MS.gene051366:CDS
AGGTTTGAACCGGGTGAACC+GGG 0.529961 7.3:+10192371 MS.gene051366:CDS
AACAAGACGGGAATCTCAAA+GGG 0.531757 7.3:+10192207 MS.gene051366:CDS
AGCCTTTGAGAAGCTCTTGT+GGG 0.535324 7.3:-10191494 None:intergenic
GTTGGGTTGGCCGTCCATAG+TGG 0.535752 7.3:-10191654 None:intergenic
TCGTATGGTTTGTGTACCCC+GGG 0.537638 7.3:+10192314 MS.gene051366:CDS
GAACAAGACGGGAATCTCAA+AGG 0.540237 7.3:+10192206 MS.gene051366:CDS
TGAAGAAGAGGCGCGTGGTG+TGG 0.545063 7.3:-10191695 None:intergenic
TCTTGTACGAGGGTATTTGT+GGG 0.550299 7.3:-10191867 None:intergenic
GGTGAGGATGGGTTGAAAGG+AGG 0.550449 7.3:-10191544 None:intergenic
GGTGGAGACTTGTGCAGTGG+AGG 0.550599 7.3:+10192425 MS.gene051366:CDS
AAACACCCACCCGGTTCACC+CGG 0.551323 7.3:-10192380 None:intergenic
CCCATCCTCACCGATCCTAC+CGG 0.557827 7.3:+10191555 MS.gene051366:CDS
TCCTCTAGTAACTCTTTATG+CGG 0.558201 7.3:-10192500 None:intergenic
AAGAACCACGCGCTCACCGT+TGG 0.568373 7.3:-10191772 None:intergenic
AGAGAAGTTTCCGGTAGGAT+CGG 0.568706 7.3:-10191565 None:intergenic
TATGGTTTGTGTACCCCGGG+TGG 0.569680 7.3:+10192317 MS.gene051366:CDS
ATGGTTTGTGTACCCCGGGT+GGG 0.571622 7.3:+10192318 MS.gene051366:CDS
ATCCCACAAGAGCTTCTCAA+AGG 0.581973 7.3:+10191492 MS.gene051366:CDS
TCTAGTAACTCTTTATGCGG+TGG 0.582196 7.3:-10192497 None:intergenic
AAGGAGGTGGATGTTGAGAG+TGG 0.584748 7.3:-10191528 None:intergenic
ACCCACAAAGAACCCTATCA+TGG 0.585380 7.3:+10191739 MS.gene051366:CDS
TTGGTTAGGTTAGAACAAGA+CGG 0.585405 7.3:+10192194 MS.gene051366:CDS
TTGAACCGGGTGAACCGGGT+GGG 0.586209 7.3:+10192375 MS.gene051366:CDS
GTGGAGACTTGTGCAGTGGA+GGG 0.586292 7.3:+10192426 MS.gene051366:CDS
GTACATTCCAATATAACCCT+CGG 0.587317 7.3:-10192105 None:intergenic
AATGATGATGATGGTGATGG+AGG 0.587786 7.3:+10192404 MS.gene051366:CDS
GGTGGATGTTGACCATGATA+GGG 0.588463 7.3:-10191751 None:intergenic
GGATGTTGAGAGTGGAGATG+AGG 0.588810 7.3:-10191520 None:intergenic
TTCCCTTGAACCACTATGGA+CGG 0.592559 7.3:+10191644 MS.gene051366:CDS
GGCCGTCCATAGTGGTTCAA+GGG 0.595077 7.3:-10191646 None:intergenic
CAAGAACAACTAGACCCACC+CGG 0.597425 7.3:-10192332 None:intergenic
ATCCACCAACGGTGAGCGCG+TGG 0.597615 7.3:+10191767 MS.gene051366:CDS
AGATACTGTGTGGGTTGGGT+TGG 0.597895 7.3:-10191667 None:intergenic
TTTGAACCGGGTGAACCGGG+TGG 0.602123 7.3:+10192374 MS.gene051366:CDS
ACCACGCGCCTCTTCTTCAA+CGG 0.605894 7.3:+10191699 MS.gene051366:CDS
AAATGGAAACTTTCCCAAAG+TGG 0.609345 7.3:-10191843 None:intergenic
AAGCTCTTGTGGGATGGAAG+TGG 0.612049 7.3:-10191484 None:intergenic
AAGAACAACTAGACCCACCC+GGG 0.614763 7.3:-10192331 None:intergenic
CACAAACCATACGAACCACA+TGG 0.615636 7.3:-10192305 None:intergenic
GATTCTGAGAAAGGTTGGAG+TGG 0.618823 7.3:+10192472 MS.gene051366:CDS
TATGCAAGAGTAAGCACCGA+GGG 0.634595 7.3:+10192089 MS.gene051366:CDS
CTTGTACGAGGGTATTTGTG+GGG 0.641046 7.3:-10191866 None:intergenic
AACAAAGCTAGGTTTGAACC+GGG 0.646696 7.3:+10192362 MS.gene051366:CDS
CCGAGAGAGAAGTTTCCGGT+AGG 0.665125 7.3:-10191570 None:intergenic
GTGGGACCAAGATACTGTGT+GGG 0.669264 7.3:-10191676 None:intergenic
AAGGGAAAGGGTGTGAACGA+CGG 0.672396 7.3:-10191628 None:intergenic
ACCGCATAAAGAGTTACTAG+AGG 0.673293 7.3:+10192499 MS.gene051366:CDS
TGTGGGACCAAGATACTGTG+TGG 0.677336 7.3:-10191677 None:intergenic
TCATGGTCAACATCCACCAA+CGG 0.689681 7.3:+10191756 MS.gene051366:CDS
GGAGGTGGAGACTTGTGCAG+TGG 0.693599 7.3:+10192422 MS.gene051366:CDS
ACCGTTGAAGAAGAGGCGCG+TGG 0.703254 7.3:-10191700 None:intergenic
TCATCATTAAAACACCCACC+CGG 0.718915 7.3:-10192389 None:intergenic
TGTGAGCTTCCAAATCCATG+TGG 0.726162 7.3:+10192290 MS.gene051366:CDS
AGTTTCCGGTAGGATCGGTG+AGG 0.731059 7.3:-10191560 None:intergenic
AGAACAACTAGACCCACCCG+GGG 0.777454 7.3:-10192330 None:intergenic
TTATGCAAGAGTAAGCACCG+AGG 0.833555 7.3:+10192088 MS.gene051366:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACGGTTATTTTTGTTATAT+TGG + chr7.3:10192012-10192031 MS.gene051366:CDS 20.0%
!! GCAAAATCTAAAATCATAGA+AGG + chr7.3:10192053-10192072 MS.gene051366:CDS 25.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG + chr7.3:10191994-10192013 MS.gene051366:CDS 25.0%
AATCTCTACTCTTTACGTTT+AGG + chr7.3:10191930-10191949 MS.gene051366:CDS 30.0%
ACGTAAAGAGTAGAGATTAT+TGG - chr7.3:10191928-10191947 None:intergenic 30.0%
CTTGTTTAGATAACAAAGCT+AGG + chr7.3:10192351-10192370 MS.gene051366:CDS 30.0%
GAAAATCACGACAAAGAAAA+AGG + chr7.3:10191975-10191994 MS.gene051366:CDS 30.0%
GATTGTTGCAAAAGATGTTA+AGG - chr7.3:10191463-10191482 None:intergenic 30.0%
TGTTTGTACTAGTAAGTTTG+AGG - chr7.3:10191805-10191824 None:intergenic 30.0%
TTGAATATTGTAGAAGCAAC+TGG - chr7.3:10191377-10191396 None:intergenic 30.0%
! TAGTTACAAGATTCTGAGAA+AGG + chr7.3:10192463-10192482 MS.gene051366:CDS 30.0%
! TCTAAAATCATAGAAGGTGA+TGG + chr7.3:10192059-10192078 MS.gene051366:CDS 30.0%
!! GAATCTCAAAGGGTATTATT+GGG + chr7.3:10192217-10192236 MS.gene051366:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG + chr7.3:10192401-10192420 MS.gene051366:CDS 30.0%
AAATGGAAACTTTCCCAAAG+TGG - chr7.3:10191846-10191865 None:intergenic 35.0%
GTACATTCCAATATAACCCT+CGG - chr7.3:10192108-10192127 None:intergenic 35.0%
GTGCTTACTCTTGCATAAAT+GGG - chr7.3:10192086-10192105 None:intergenic 35.0%
TAACAAAGCTAGGTTTGAAC+CGG + chr7.3:10192361-10192380 MS.gene051366:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG - chr7.3:10192503-10192522 None:intergenic 35.0%
TTGAATTTCTGAACATCAGC+AGG - chr7.3:10192146-10192165 None:intergenic 35.0%
TTGGTTAGGTTAGAACAAGA+CGG + chr7.3:10192194-10192213 MS.gene051366:CDS 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG + chr7.3:10192175-10192194 MS.gene051366:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG + chr7.3:10192467-10192486 MS.gene051366:CDS 35.0%
!! GAAGTTTTGATCTTGTACGA+GGG - chr7.3:10191880-10191899 None:intergenic 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG + chr7.3:10192216-10192235 MS.gene051366:CDS 35.0%
!! TGAAGTTTTGATCTTGTACG+AGG - chr7.3:10191881-10191900 None:intergenic 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG + chr7.3:10192395-10192414 MS.gene051366:CDS 35.0%
!!! GTTTTATGTCGTTTTGGTTG+TGG - chr7.3:10191605-10191624 None:intergenic 35.0%
AACAAAGCTAGGTTTGAACC+GGG + chr7.3:10192362-10192381 MS.gene051366:CDS 40.0%
AACAAGACGGGAATCTCAAA+GGG + chr7.3:10192207-10192226 MS.gene051366:CDS 40.0%
ACCATGATAGGGTTCTTTGT+GGG - chr7.3:10191743-10191762 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG + chr7.3:10192499-10192518 MS.gene051366:CDS 40.0%
ACGTTTAGGTGACACTTTCA+TGG + chr7.3:10191944-10191963 MS.gene051366:CDS 40.0%
CACAAGTTTCGCTAATAGCT+TGG - chr7.3:10192274-10192293 None:intergenic 40.0%
CGTTTAGGTGACACTTTCAT+GGG + chr7.3:10191945-10191964 MS.gene051366:CDS 40.0%
GGGATTCAACAAAGTCTAGT+TGG + chr7.3:10192237-10192256 MS.gene051366:CDS 40.0%
GGTGCTTACTCTTGCATAAA+TGG - chr7.3:10192087-10192106 None:intergenic 40.0%
TCATCATTAAAACACCCACC+CGG - chr7.3:10192392-10192411 None:intergenic 40.0%
TCTAGTAACTCTTTATGCGG+TGG - chr7.3:10192500-10192519 None:intergenic 40.0%
TGGTTAGGTTAGAACAAGAC+GGG + chr7.3:10192195-10192214 MS.gene051366:CDS 40.0%
! AACCTCAAAAACGCCACTTT+GGG + chr7.3:10191830-10191849 MS.gene051366:CDS 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG - chr7.3:10192130-10192149 None:intergenic 40.0%
!! AATGATGATGATGGTGATGG+AGG + chr7.3:10192404-10192423 MS.gene051366:CDS 40.0%
!! ATCTTGTACGAGGGTATTTG+TGG - chr7.3:10191871-10191890 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG + chr7.3:10192180-10192199 MS.gene051366:CDS 40.0%
!! TCTTGTACGAGGGTATTTGT+GGG - chr7.3:10191870-10191889 None:intergenic 40.0%
!!! CAACGGTAGTCTTGTTTTGT+GGG + chr7.3:10191716-10191735 MS.gene051366:CDS 40.0%
!!! TCAACGGTAGTCTTGTTTTG+TGG + chr7.3:10191715-10191734 MS.gene051366:CDS 40.0%
!!! TTATGTCGTTTTGGTTGTGG+CGG - chr7.3:10191602-10191621 None:intergenic 40.0%
ACCAAGATACTGTGTGGGTT+GGG - chr7.3:10191674-10191693 None:intergenic 45.0%
ACCCACAAAGAACCCTATCA+TGG + chr7.3:10191739-10191758 MS.gene051366:CDS 45.0%
AGAGAAGTTTCCGGTAGGAT+CGG - chr7.3:10191568-10191587 None:intergenic 45.0%
ATCCCACAAGAGCTTCTCAA+AGG + chr7.3:10191492-10191511 MS.gene051366:CDS 45.0%
CAACCTCAAAAACGCCACTT+TGG + chr7.3:10191829-10191848 MS.gene051366:CDS 45.0%
CAAGACTACCGTTGAAGAAG+AGG - chr7.3:10191710-10191729 None:intergenic 45.0%
CACAAACCATACGAACCACA+TGG - chr7.3:10192308-10192327 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG + chr7.3:10192299-10192318 MS.gene051366:CDS 45.0%
CCATACGAACCACATGGATT+TGG - chr7.3:10192302-10192321 None:intergenic 45.0%
CCATAGTGGTTCAAGGGAAA+GGG - chr7.3:10191643-10191662 None:intergenic 45.0%
GAACAAGACGGGAATCTCAA+AGG + chr7.3:10192206-10192225 MS.gene051366:CDS 45.0%
GACCATGATAGGGTTCTTTG+TGG - chr7.3:10191744-10191763 None:intergenic 45.0%
GGTGGATGTTGACCATGATA+GGG - chr7.3:10191754-10191773 None:intergenic 45.0%
TCATGGTCAACATCCACCAA+CGG + chr7.3:10191756-10191775 MS.gene051366:CDS 45.0%
TCCATAGTGGTTCAAGGGAA+AGG - chr7.3:10191644-10191663 None:intergenic 45.0%
TGTGAGCTTCCAAATCCATG+TGG + chr7.3:10192290-10192309 MS.gene051366:CDS 45.0%
TTCCCTTGAACCACTATGGA+CGG + chr7.3:10191644-10191663 MS.gene051366:CDS 45.0%
TTTGAGAAGCTCTTGTGGGA+TGG - chr7.3:10191493-10191512 None:intergenic 45.0%
! AAGCCTTTGAGAAGCTCTTG+TGG - chr7.3:10191498-10191517 None:intergenic 45.0%
! AGCCTTTGAGAAGCTCTTGT+GGG - chr7.3:10191497-10191516 None:intergenic 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG + chr7.3:10192472-10192491 MS.gene051366:CDS 45.0%
! TGGTGGATGTTGACCATGAT+AGG - chr7.3:10191755-10191774 None:intergenic 45.0%
! TTATGCAAGAGTAAGCACCG+AGG + chr7.3:10192088-10192107 MS.gene051366:CDS 45.0%
! TTCCCAAAGTGGCGTTTTTG+AGG - chr7.3:10191835-10191854 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG + chr7.3:10192313-10192332 MS.gene051366:CDS 45.0%
!! CGGCGAGTTTTATGTCGTTT+TGG - chr7.3:10191611-10191630 None:intergenic 45.0%
!! CTTGTACGAGGGTATTTGTG+GGG - chr7.3:10191869-10191888 None:intergenic 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG + chr7.3:10192098-10192117 MS.gene051366:CDS 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG + chr7.3:10192089-10192108 MS.gene051366:CDS 45.0%
AAGAACAACTAGACCCACCC+GGG - chr7.3:10192334-10192353 None:intergenic 50.0%
AAGCTCTTGTGGGATGGAAG+TGG - chr7.3:10191487-10191506 None:intergenic 50.0%
AAGGAGGTGGATGTTGAGAG+TGG - chr7.3:10191531-10191550 None:intergenic 50.0%
ACCCAACCCACACAGTATCT+TGG + chr7.3:10191670-10191689 MS.gene051366:CDS 50.0%
CAAGAACAACTAGACCCACC+CGG - chr7.3:10192335-10192354 None:intergenic 50.0%
CCCTTTCCCTTGAACCACTA+TGG + chr7.3:10191640-10191659 MS.gene051366:CDS 50.0%
CCTACCGGAAACTTCTCTCT+CGG + chr7.3:10191570-10191589 MS.gene051366:CDS 50.0%
CTACCGGAAACTTCTCTCTC+GGG + chr7.3:10191571-10191590 MS.gene051366:CDS 50.0%
GAACCCGAGAGAGAAGTTTC+CGG - chr7.3:10191577-10191596 None:intergenic 50.0%
GACCAAGATACTGTGTGGGT+TGG - chr7.3:10191675-10191694 None:intergenic 50.0%
GGATGTTGAGAGTGGAGATG+AGG - chr7.3:10191523-10191542 None:intergenic 50.0%
GTGGGACCAAGATACTGTGT+GGG - chr7.3:10191679-10191698 None:intergenic 50.0%
TAGGTTTGAACCGGGTGAAC+CGG + chr7.3:10192370-10192389 MS.gene051366:CDS 50.0%
TGTGGGACCAAGATACTGTG+TGG - chr7.3:10191680-10191699 None:intergenic 50.0%
! AAGGGAAAGGGTGTGAACGA+CGG - chr7.3:10191631-10191650 None:intergenic 50.0%
! TCGTATGGTTTGTGTACCCC+GGG + chr7.3:10192314-10192333 MS.gene051366:CDS 50.0%
!! AGATACTGTGTGGGTTGGGT+TGG - chr7.3:10191670-10191689 None:intergenic 50.0%
!! ATCGGTGAGGATGGGTTGAA+AGG - chr7.3:10191550-10191569 None:intergenic 50.0%
!! CGAGGGTATTTGTGGGGAAA+TGG - chr7.3:10191863-10191882 None:intergenic 50.0%
!! GATGATGATGGTGATGGAGG+TGG + chr7.3:10192407-10192426 MS.gene051366:CDS 50.0%
ACCACGCGCCTCTTCTTCAA+CGG + chr7.3:10191699-10191718 MS.gene051366:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG - chr7.3:10192333-10192352 None:intergenic 55.0%
AGGTTTGAACCGGGTGAACC+GGG + chr7.3:10192371-10192390 MS.gene051366:CDS 55.0%
AGTTTCCGGTAGGATCGGTG+AGG - chr7.3:10191563-10191582 None:intergenic 55.0%
CCGAGAGAGAAGTTTCCGGT+AGG - chr7.3:10191573-10191592 None:intergenic 55.0%
GACTTGTGCAGTGGAGGGAT+TGG + chr7.3:10192431-10192450 MS.gene051366:CDS 55.0%
GGCCGTCCATAGTGGTTCAA+GGG - chr7.3:10191649-10191668 None:intergenic 55.0%
GTGGAGACTTGTGCAGTGGA+GGG + chr7.3:10192426-10192445 MS.gene051366:CDS 55.0%
TGGCCGTCCATAGTGGTTCA+AGG - chr7.3:10191650-10191669 None:intergenic 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG + chr7.3:10192318-10192337 MS.gene051366:CDS 55.0%
! TATGGTTTGTGTACCCCGGG+TGG + chr7.3:10192317-10192336 MS.gene051366:CDS 55.0%
!! GAGGATGGGTTGAAAGGAGG+TGG - chr7.3:10191544-10191563 None:intergenic 55.0%
!! GGTGAGGATGGGTTGAAAGG+AGG - chr7.3:10191547-10191566 None:intergenic 55.0%
!!! TGTCGTTTTGGTTGTGGCGG+AGG - chr7.3:10191599-10191618 None:intergenic 55.0%
AAACACCCACCCGGTTCACC+CGG - chr7.3:10192383-10192402 None:intergenic 60.0%
AAGAACCACGCGCTCACCGT+TGG - chr7.3:10191775-10191794 None:intergenic 60.0%
CCCATCCTCACCGATCCTAC+CGG + chr7.3:10191555-10191574 MS.gene051366:CDS 60.0%
CCGGTAGGATCGGTGAGGAT+GGG - chr7.3:10191558-10191577 None:intergenic 60.0%
GGAGGTGGAGACTTGTGCAG+TGG + chr7.3:10192422-10192441 MS.gene051366:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG + chr7.3:10192425-10192444 MS.gene051366:CDS 60.0%
TCCGGTAGGATCGGTGAGGA+TGG - chr7.3:10191559-10191578 None:intergenic 60.0%
TTGAACCGGGTGAACCGGGT+GGG + chr7.3:10192375-10192394 MS.gene051366:CDS 60.0%
TTTGAACCGGGTGAACCGGG+TGG + chr7.3:10192374-10192393 MS.gene051366:CDS 60.0%
! ACCGTTGAAGAAGAGGCGCG+TGG - chr7.3:10191703-10191722 None:intergenic 60.0%
! GAAGAAGAGGCGCGTGGTGT+GGG - chr7.3:10191697-10191716 None:intergenic 60.0%
! TGAAGAAGAGGCGCGTGGTG+TGG - chr7.3:10191698-10191717 None:intergenic 60.0%
!! GTTGGGTTGGCCGTCCATAG+TGG - chr7.3:10191657-10191676 None:intergenic 60.0%
AACCACGCGCTCACCGTTGG+TGG - chr7.3:10191772-10191791 None:intergenic 65.0%
ATCCACCAACGGTGAGCGCG+TGG + chr7.3:10191767-10191786 MS.gene051366:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 10191366 10192523 10191366 ID=MS.gene051366
chr7.3 mRNA 10191366 10192523 10191366 ID=MS.gene051366.t1;Parent=MS.gene051366
chr7.3 exon 10191366 10192523 10191366 ID=MS.gene051366.t1.exon1;Parent=MS.gene051366.t1
chr7.3 CDS 10191366 10192523 10191366 ID=cds.MS.gene051366.t1;Parent=MS.gene051366.t1
Gene Sequence

>MS.gene051366

ATGTCTATCCAGTTGCTTCTACAATATTCAAACATGTATGCAACACATAAGCTTCATTTCACAAATATAATTCTCGTTCTATTCTTTTCTACTACCTTAACATCTTTTGCAACAATCACCACTTCCATCCCACAAGAGCTTCTCAAAGGCTTCTCCTCATCTCCACTCTCAACATCCACCTCCTTTCAACCCATCCTCACCGATCCTACCGGAAACTTCTCTCTCGGGTTCCTCCGCCACAACCAAAACGACATAAAACTCGCCGTCGTTCACACCCTTTCCCTTGAACCACTATGGACGGCCAACCCAACCCACACAGTATCTTGGTCCCACACCACGCGCCTCTTCTTCAACGGTAGTCTTGTTTTGTGGGACCCACAAAGAACCCTATCATGGTCAACATCCACCAACGGTGAGCGCGTGGTTCTTCTCAATACCTCAAACTTACTAGTACAAACAAAAACAACCTCAAAAACGCCACTTTGGGAAAGTTTCCATTTCCCCACAAATACCCTCGTACAAGATCAAAACTTCACTTCAAACATGTCTTTAGTATCAACCAATAATCTCTACTCTTTACGTTTAGGTGACACTTTCATGGGTTTATACGAAAATCACGACAAAGAAAAAGGTAGTTTGTTAACAAAACGGTTATTTTTGTTATATTGGAAACGTTCTGCACTACAAGCAAAATCTAAAATCATAGAAGGTGATGGACCCATTTATGCAAGAGTAAGCACCGAGGGTTATATTGGAATGTACCAAACAAGTTCTAAACCTGCTGATGTTCAGAAATTCAACAGTTTTCAAGAAACTTCGTCGTTTCTTTTGGTTAGGTTAGAACAAGACGGGAATCTCAAAGGGTATTATTGGGATTCAACAAAGTCTAGTTGGATACTTAACTTCCAAGCTATTAGCGAAACTTGTGAGCTTCCAAATCCATGTGGTTCGTATGGTTTGTGTACCCCGGGTGGGTCTAGTTGTTCTTGTTTAGATAACAAAGCTAGGTTTGAACCGGGTGAACCGGGTGGGTGTTTTAATGATGATGATGGTGATGGAGGTGGAGACTTGTGCAGTGGAGGGATTGGCGAAGAGAATAGTTACAAGATTCTGAGAAAGGTTGGAGTGGAGCCACCGCATAAAGAGTTACTAGAGGAA

Protein sequence

>MS.gene051366.t1

MSIQLLLQYSNMYATHKLHFTNIILVLFFSTTLTSFATITTSIPQELLKGFSSSPLSTSTSFQPILTDPTGNFSLGFLRHNQNDIKLAVVHTLSLEPLWTANPTHTVSWSHTTRLFFNGSLVLWDPQRTLSWSTSTNGERVVLLNTSNLLVQTKTTSKTPLWESFHFPTNTLVQDQNFTSNMSLVSTNNLYSLRLGDTFMGLYENHDKEKGSLLTKRLFLLYWKRSALQAKSKIIEGDGPIYARVSTEGYIGMYQTSSKPADVQKFNSFQETSSFLLVRLEQDGNLKGYYWDSTKSSWILNFQAISETCELPNPCGSYGLCTPGGSSCSCLDNKARFEPGEPGGCFNDDDGDGGGDLCSGGIGEENSYKILRKVGVEPPHKELLEE