Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071702.t1 | XP_003608194.2 | 95.7 | 395 | 13 | 2 | 1 | 392 | 129 | 522 | 4.60E-215 | 756.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071702.t1 | M0ZYF3 | 70.4 | 395 | 112 | 2 | 1 | 392 | 82 | 474 | 3.2e-164 | 579.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071702.t1 | G7JQS9 | 95.7 | 395 | 13 | 2 | 1 | 392 | 129 | 522 | 3.3e-215 | 756.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052537 | MS.gene071702 | 0.874138 | 8.53E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGAGTTGTTCAACAAAAT+TGG | 0.171502 | 4.3:-22707392 | MS.gene071702:CDS |
| CATCACTCAAAACTATCTTT+TGG | 0.254195 | 4.3:+22708051 | None:intergenic |
| TAGATCAACAAGTGCCTTAT+AGG | 0.262816 | 4.3:+22707274 | None:intergenic |
| CCCTTGATACCAAAAGTTAA+AGG | 0.285822 | 4.3:+22708744 | None:intergenic |
| TTTCAGAAAGCATCAGATTA+AGG | 0.287447 | 4.3:+22708655 | None:intergenic |
| GTGTTGGTACCCTTGAATTC+AGG | 0.309821 | 4.3:-22709119 | MS.gene071702:CDS |
| GGAGCTGAGCCTTTAACTTT+TGG | 0.313907 | 4.3:-22708753 | MS.gene071702:CDS |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.321151 | 4.3:-22708019 | MS.gene071702:CDS |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 4.3:-22708011 | MS.gene071702:CDS |
| TGTATCATGCTCAAGAAATA+AGG | 0.343406 | 4.3:-22708689 | MS.gene071702:CDS |
| GCAAAGGGATTGTCACTTGC+TGG | 0.347404 | 4.3:-22707096 | MS.gene071702:CDS |
| TAGAGTTGTTCAACAAAATT+GGG | 0.356038 | 4.3:-22707391 | MS.gene071702:CDS |
| ACAATTTGTGTATAAACATA+TGG | 0.358161 | 4.3:-22707318 | MS.gene071702:CDS |
| CTGCTGCATTGTGTAGTTAT+TGG | 0.365839 | 4.3:-22708479 | MS.gene071702:CDS |
| TGTCATATGCAACTTTGAAT+TGG | 0.368204 | 4.3:+22708793 | None:intergenic |
| GGCATCAGTAGGTGCCTATA+AGG | 0.371076 | 4.3:-22707288 | MS.gene071702:CDS |
| TTCTTTCTAGCTTCCTGCAC+TGG | 0.393614 | 4.3:-22709036 | MS.gene071702:CDS |
| TGAAGTTCCTTATGGTCTCT+TGG | 0.393992 | 4.3:-22708024 | MS.gene071702:CDS |
| ATCTTACACGTGTGCTGAGC+TGG | 0.396198 | 4.3:-22707040 | MS.gene071702:CDS |
| GTCTGGAGTTTGTCTTATGC+GGG | 0.399394 | 4.3:-22708096 | MS.gene071702:CDS |
| GTGTGCTGAGCTGGAGGAAT+AGG | 0.406321 | 4.3:-22707031 | None:intergenic |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 4.3:-22707790 | MS.gene071702:CDS |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 4.3:-22708005 | MS.gene071702:CDS |
| TGATACAGAATTGGTGTTGA+TGG | 0.434223 | 4.3:-22707844 | MS.gene071702:intron |
| GTGGAAGATGTCTTTGCACT+TGG | 0.442231 | 4.3:-22707802 | MS.gene071702:CDS |
| GATGGAACTGAAGTTCCTTA+TGG | 0.446289 | 4.3:-22708032 | MS.gene071702:CDS |
| AACAAAATTGGGAAACAGAA+TGG | 0.446795 | 4.3:-22707380 | MS.gene071702:CDS |
| CAGCAACAGACCTGAATTCA+AGG | 0.450864 | 4.3:+22709109 | None:intergenic |
| AGCTAGAAAGAAGTATGAGT+TGG | 0.457476 | 4.3:+22709047 | None:intergenic |
| CAAAGGGATTGTCACTTGCT+GGG | 0.463485 | 4.3:-22707095 | MS.gene071702:CDS |
| TGGAAGATGTCTTTGCACTT+GGG | 0.463774 | 4.3:-22707801 | MS.gene071702:CDS |
| GTTATTGGAGGTGGTCCTAC+AGG | 0.464952 | 4.3:-22708464 | MS.gene071702:CDS |
| TGAGCTAAAGCTGGAAGCAC+TGG | 0.467552 | 4.3:+22707745 | None:intergenic |
| CATATCACCAAGGAATCATA+TGG | 0.470079 | 4.3:-22709169 | MS.gene071702:CDS |
| ACTGAATCTTCAAGCTCTCC+AGG | 0.472517 | 4.3:-22707961 | MS.gene071702:CDS |
| GCATCCTGTATTCTACCAAC+AGG | 0.478437 | 4.3:+22709084 | None:intergenic |
| GTGAAAACCATATGATTCCT+TGG | 0.479965 | 4.3:+22709162 | None:intergenic |
| AGTGCTTCCAGCTTTAGCTC+AGG | 0.480412 | 4.3:-22707743 | MS.gene071702:intron |
| TCTGCAGATGGCATCACACT+TGG | 0.481006 | 4.3:-22707344 | MS.gene071702:CDS |
| GACAAGCTTGTAATTGCAGC+TGG | 0.484313 | 4.3:-22708774 | MS.gene071702:CDS |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 4.3:+22708017 | None:intergenic |
| TATGCAACTTTGAATTGGTA+AGG | 0.497896 | 4.3:+22708798 | None:intergenic |
| CAATTTGTGTATAAACATAT+GGG | 0.504254 | 4.3:-22707317 | MS.gene071702:CDS |
| GGAAGATGTCTTTGCACTTG+GGG | 0.505360 | 4.3:-22707800 | MS.gene071702:CDS |
| GTTTGTGTCAACTCCAGTGC+AGG | 0.507620 | 4.3:+22709023 | None:intergenic |
| TCTTATGCGGGGTGTGGTGA+AGG | 0.508837 | 4.3:-22708084 | MS.gene071702:CDS |
| CTGCATTGTGTAGTTATTGG+AGG | 0.508933 | 4.3:-22708476 | MS.gene071702:CDS |
| AGGCTAACCTGAGCTAAAGC+TGG | 0.509934 | 4.3:+22707736 | None:intergenic |
| GCTAGAAAGAAGTATGAGTT+GGG | 0.516821 | 4.3:+22709048 | None:intergenic |
| CCTACAGGAGTGGAATTTAG+TGG | 0.520988 | 4.3:-22708449 | MS.gene071702:CDS |
| CTCTTTAGATAATCCACCAT+TGG | 0.522845 | 4.3:+22708821 | None:intergenic |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 4.3:-22708366 | MS.gene071702:intron |
| ATACTTTCATCCTTTGACGT+TGG | 0.533948 | 4.3:-22708241 | MS.gene071702:CDS |
| CATTGTGTAGTTATTGGAGG+TGG | 0.534574 | 4.3:-22708473 | MS.gene071702:CDS |
| AGTCTGGAGTTTGTCTTATG+CGG | 0.535341 | 4.3:-22708097 | MS.gene071702:CDS |
| CTGTCGAAGGCCAACGTCAA+AGG | 0.536614 | 4.3:+22708231 | None:intergenic |
| ATAAGGCACTTGTTGATCTA+CGG | 0.542831 | 4.3:-22707271 | MS.gene071702:intron |
| CCACTAAATTCCACTCCTGT+AGG | 0.546000 | 4.3:+22708449 | None:intergenic |
| AGGTCTGTTGCTGAGCCTGT+TGG | 0.569427 | 4.3:-22709099 | MS.gene071702:CDS |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 4.3:-22707840 | MS.gene071702:intron |
| GGAAAGGCTTTGTCTGCAGA+TGG | 0.574116 | 4.3:-22707356 | MS.gene071702:CDS |
| TCTTATGTTATAGGATGCAA+AGG | 0.575813 | 4.3:-22707112 | MS.gene071702:intron |
| TTGTTGGCTTCAACATGTGT+TGG | 0.577991 | 4.3:-22709135 | MS.gene071702:CDS |
| CTGATGCTTTCTGAAAATCC+AGG | 0.580189 | 4.3:-22708648 | MS.gene071702:intron |
| TGCGAGGCAGTTACCAATGG+TGG | 0.582363 | 4.3:-22708834 | MS.gene071702:CDS |
| TGAGCCTGTTGGTAGAATAC+AGG | 0.585959 | 4.3:-22709088 | MS.gene071702:CDS |
| GGCTTCACATACCTTCCACC+TGG | 0.586382 | 4.3:+22707943 | None:intergenic |
| AGTTTGTCTTATGCGGGGTG+TGG | 0.589261 | 4.3:-22708090 | MS.gene071702:CDS |
| CTTCAAGCTCTCCAGGTGGA+AGG | 0.592951 | 4.3:-22707954 | MS.gene071702:CDS |
| TACTGCGAGGCAGTTACCAA+TGG | 0.597374 | 4.3:-22708837 | MS.gene071702:CDS |
| CTTATGTTATAGGATGCAAA+GGG | 0.602916 | 4.3:-22707111 | MS.gene071702:intron |
| TGGGAAACAGAATGGAGGAA+AGG | 0.603382 | 4.3:-22707372 | MS.gene071702:CDS |
| ATGGGGAGCATGGCATCAGT+AGG | 0.604143 | 4.3:-22707299 | MS.gene071702:CDS |
| GTATAAACATATGGGGAGCA+TGG | 0.604718 | 4.3:-22707309 | MS.gene071702:CDS |
| AATACAGGATGCACTAGCAA+AGG | 0.606941 | 4.3:-22709073 | MS.gene071702:CDS |
| ATGGATGCGTGTTCCGTCTG+TGG | 0.610196 | 4.3:-22707821 | MS.gene071702:CDS |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 4.3:+22707995 | None:intergenic |
| TATGCGGGGTGTGGTGAAGG+AGG | 0.616063 | 4.3:-22708081 | MS.gene071702:CDS |
| TGGAGGTGGTCCTACAGGAG+TGG | 0.621881 | 4.3:-22708459 | MS.gene071702:CDS |
| GCTTCGTTGCATACTGTCGA+AGG | 0.629576 | 4.3:+22708218 | None:intergenic |
| GCAAAGACATCTTCCACAGA+CGG | 0.636642 | 4.3:+22707808 | None:intergenic |
| TTACACGTGTGCTGAGCTGG+AGG | 0.642106 | 4.3:-22707037 | MS.gene071702:CDS |
| TCTGGAGTTTGTCTTATGCG+GGG | 0.644473 | 4.3:-22708095 | MS.gene071702:CDS |
| AGCAACAGACCTGAATTCAA+GGG | 0.646467 | 4.3:+22709110 | None:intergenic |
| TGACAGGTTGCTGAAAGACA+AGG | 0.650294 | 4.3:-22707425 | MS.gene071702:intron |
| ACACATGTTGAAGCCAACAA+AGG | 0.657554 | 4.3:+22709138 | None:intergenic |
| AAAATTGGGAAACAGAATGG+AGG | 0.666719 | 4.3:-22707377 | MS.gene071702:CDS |
| AATTTGTGTATAAACATATG+GGG | 0.676076 | 4.3:-22707316 | MS.gene071702:CDS |
| TGCAACGAAGCACTTAACAA+AGG | 0.676652 | 4.3:-22708206 | MS.gene071702:intron |
| GAATCTTCAAGCTCTCCAGG+TGG | 0.686779 | 4.3:-22707958 | MS.gene071702:CDS |
| CAGCACACGTGTAAGATATG+CGG | 0.691917 | 4.3:+22707046 | None:intergenic |
| ATGTCAACAGGTCTACTGCG+AGG | 0.733020 | 4.3:-22708850 | MS.gene071702:intron |
| ATGTTGTGTGCATATCACCA+AGG | 0.767641 | 4.3:-22709179 | MS.gene071702:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTAAATTTTAATATC+TGG | + | chr4.3:22708300-22708319 | None:intergenic | 10.0% |
| !!! | ATTTGTTATAATAATTATGC+AGG | - | chr4.3:22707633-22707652 | MS.gene071702:intron | 15.0% |
| !! | AAGACAATATAGATAAATGT+CGG | + | chr4.3:22708579-22708598 | None:intergenic | 20.0% |
| !! | AATGTAAAAATTTCCAATAG+AGG | - | chr4.3:22708606-22708625 | MS.gene071702:intron | 20.0% |
| !! | AATTATGAAAAGTTAAACAG+TGG | + | chr4.3:22707947-22707966 | None:intergenic | 20.0% |
| !! | AATTTGTGTATAAACATATG+GGG | - | chr4.3:22708903-22708922 | MS.gene071702:intron | 20.0% |
| !! | ACAATTTGTGTATAAACATA+TGG | - | chr4.3:22708901-22708920 | MS.gene071702:intron | 20.0% |
| !! | ATGTAAAAATTTCCAATAGA+GGG | - | chr4.3:22708607-22708626 | MS.gene071702:intron | 20.0% |
| !! | CAAAATGTATCTTATGTTAT+AGG | - | chr4.3:22709098-22709117 | MS.gene071702:CDS | 20.0% |
| !! | CAATTTGTGTATAAACATAT+GGG | - | chr4.3:22708902-22708921 | MS.gene071702:intron | 20.0% |
| !!! | AAAATGTTTTTCATTATGAC+AGG | - | chr4.3:22707692-22707711 | MS.gene071702:intron | 20.0% |
| !!! | AGTATAGTTTTTCTAAAAGA+AGG | + | chr4.3:22707249-22707268 | None:intergenic | 20.0% |
| !!! | CTGTTTAACTTTTCATAATT+AGG | - | chr4.3:22707947-22707966 | MS.gene071702:intron | 20.0% |
| !!! | GTATAGTTTTTCTAAAAGAA+GGG | + | chr4.3:22707248-22707267 | None:intergenic | 20.0% |
| !!! | TCTATTGGAAATTTTTACAT+TGG | + | chr4.3:22708607-22708626 | None:intergenic | 20.0% |
| ! | CAAAACATCATAAGACAATA+AGG | + | chr4.3:22708506-22708525 | None:intergenic | 25.0% |
| ! | GAAAAACTATACTGTTACAA+TGG | - | chr4.3:22707256-22707275 | MS.gene071702:intron | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | + | chr4.3:22707610-22707629 | None:intergenic | 25.0% |
| ! | GTTATAATAATTATGCAGGT+GGG | - | chr4.3:22707637-22707656 | MS.gene071702:intron | 25.0% |
| ! | TAGAGTTGTTCAACAAAATT+GGG | - | chr4.3:22708828-22708847 | MS.gene071702:CDS | 25.0% |
| ! | TGTTATAATAATTATGCAGG+TGG | - | chr4.3:22707636-22707655 | MS.gene071702:intron | 25.0% |
| !! | ATCACTCAAAACTATCTTTT+GGG | + | chr4.3:22708170-22708189 | None:intergenic | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | - | chr4.3:22708106-22708125 | MS.gene071702:intron | 25.0% |
| !!! | GTCATTATTTTTTTTGCCAA+AGG | - | chr4.3:22707661-22707680 | MS.gene071702:intron | 25.0% |
| AACAAAATTGGGAAACAGAA+TGG | - | chr4.3:22708839-22708858 | MS.gene071702:CDS | 30.0% | |
| ATGCATAGTACTACAGAAAT+AGG | - | chr4.3:22708673-22708692 | MS.gene071702:CDS | 30.0% | |
| CTAATGTCTAATTTACACTC+TGG | - | chr4.3:22709015-22709034 | MS.gene071702:CDS | 30.0% | |
| CTTATGTTATAGGATGCAAA+GGG | - | chr4.3:22709108-22709127 | MS.gene071702:CDS | 30.0% | |
| GACATGTAATCATTGAAGAT+TGG | + | chr4.3:22708069-22708088 | None:intergenic | 30.0% | |
| GTAGAGTTGTTCAACAAAAT+TGG | - | chr4.3:22708827-22708846 | MS.gene071702:CDS | 30.0% | |
| GTTGTTGAATGATACAGAAT+TGG | - | chr4.3:22708366-22708385 | MS.gene071702:intron | 30.0% | |
| TATGCAACTTTGAATTGGTA+AGG | + | chr4.3:22707424-22707443 | None:intergenic | 30.0% | |
| TCTTATGTTATAGGATGCAA+AGG | - | chr4.3:22709107-22709126 | MS.gene071702:CDS | 30.0% | |
| TGTATCATGCTCAAGAAATA+AGG | - | chr4.3:22707530-22707549 | MS.gene071702:intron | 30.0% | |
| TGTCATATGCAACTTTGAAT+TGG | + | chr4.3:22707429-22707448 | None:intergenic | 30.0% | |
| ! | CAATTTTACTTCATGTCAAC+AGG | - | chr4.3:22707357-22707376 | MS.gene071702:CDS | 30.0% |
| ! | CATCACTCAAAACTATCTTT+TGG | + | chr4.3:22708171-22708190 | None:intergenic | 30.0% |
| ! | TCACTCAAAACTATCTTTTG+GGG | + | chr4.3:22708169-22708188 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTCAGTACATA+TGG | - | chr4.3:22708516-22708535 | MS.gene071702:intron | 30.0% |
| ! | TTTTGTTGAACAACTCTACA+AGG | + | chr4.3:22708826-22708845 | None:intergenic | 30.0% |
| !! | CCTTTAACTTTTGGTATCAA+GGG | - | chr4.3:22707475-22707494 | MS.gene071702:intron | 30.0% |
| !! | TTTCAGAAAGCATCAGATTA+AGG | + | chr4.3:22707567-22707586 | None:intergenic | 30.0% |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | + | chr4.3:22708241-22708260 | None:intergenic | 30.0% |
| !!! | CAAAAGATAGTTTTGAGTGA+TGG | - | chr4.3:22708169-22708188 | MS.gene071702:intron | 30.0% |
| AAAATTGGGAAACAGAATGG+AGG | - | chr4.3:22708842-22708861 | MS.gene071702:CDS | 35.0% | |
| ATACGCGATCTAAACACAAA+AGG | + | chr4.3:22708043-22708062 | None:intergenic | 35.0% | |
| ATACTTTCATCCTTTGACGT+TGG | - | chr4.3:22707978-22707997 | MS.gene071702:CDS | 35.0% | |
| CATATCACCAAGGAATCATA+TGG | - | chr4.3:22707050-22707069 | MS.gene071702:CDS | 35.0% | |
| CCCTTGATACCAAAAGTTAA+AGG | + | chr4.3:22707478-22707497 | None:intergenic | 35.0% | |
| CTCTTTAGATAATCCACCAT+TGG | + | chr4.3:22707401-22707420 | None:intergenic | 35.0% | |
| GAAACTTTCCCATTATACCT+TGG | + | chr4.3:22708978-22708997 | None:intergenic | 35.0% | |
| GTGAAAACCATATGATTCCT+TGG | + | chr4.3:22707060-22707079 | None:intergenic | 35.0% | |
| TAGATCAACAAGTGCCTTAT+AGG | + | chr4.3:22708948-22708967 | None:intergenic | 35.0% | |
| ! | AGCTAGAAAGAAGTATGAGT+TGG | + | chr4.3:22707175-22707194 | None:intergenic | 35.0% |
| ! | ATAAGGCACTTGTTGATCTA+CGG | - | chr4.3:22708948-22708967 | MS.gene071702:intron | 35.0% |
| ! | GCTAGAAAGAAGTATGAGTT+GGG | + | chr4.3:22707174-22707193 | None:intergenic | 35.0% |
| ! | GTTTTCTTGAACAAACTGGA+AGG | - | chr4.3:22708451-22708470 | MS.gene071702:CDS | 35.0% |
| ! | TATGGTTTTCACTCCTTTGT+TGG | - | chr4.3:22707068-22707087 | MS.gene071702:CDS | 35.0% |
| ! | TTTTGGTATCAAGGGAGTAA+AGG | - | chr4.3:22707483-22707502 | MS.gene071702:intron | 35.0% |
| !! | AACATTTTCAGCTTAGCCTT+TGG | + | chr4.3:22707680-22707699 | None:intergenic | 35.0% |
| !! | ATGTCGGCTTAACTTTGTTT+AGG | + | chr4.3:22708563-22708582 | None:intergenic | 35.0% |
| !! | GCCTTTAACTTTTGGTATCA+AGG | - | chr4.3:22707474-22707493 | MS.gene071702:intron | 35.0% |
| !! | TGATACAGAATTGGTGTTGA+TGG | - | chr4.3:22708375-22708394 | MS.gene071702:CDS | 35.0% |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | + | chr4.3:22708242-22708261 | None:intergenic | 35.0% |
| AATACAGGATGCACTAGCAA+AGG | - | chr4.3:22707146-22707165 | MS.gene071702:intron | 40.0% | |
| ACACATGTTGAAGCCAACAA+AGG | + | chr4.3:22707084-22707103 | None:intergenic | 40.0% | |
| ACGGCAATCCAAGGTATAAT+GGG | - | chr4.3:22708967-22708986 | MS.gene071702:intron | 40.0% | |
| AGCAACAGACCTGAATTCAA+GGG | + | chr4.3:22707112-22707131 | None:intergenic | 40.0% | |
| ATGTTGTGTGCATATCACCA+AGG | - | chr4.3:22707040-22707059 | MS.gene071702:CDS | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | - | chr4.3:22707853-22707872 | MS.gene071702:intron | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | - | chr4.3:22707746-22707765 | MS.gene071702:CDS | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | - | chr4.3:22707743-22707762 | MS.gene071702:intron | 40.0% | |
| CTGCTGCATTGTGTAGTTAT+TGG | - | chr4.3:22707740-22707759 | MS.gene071702:intron | 40.0% | |
| GAGTATACTTTCCTATGCAC+TGG | - | chr4.3:22708767-22708786 | MS.gene071702:CDS | 40.0% | |
| GATGGAACTGAAGTTCCTTA+TGG | - | chr4.3:22708187-22708206 | MS.gene071702:intron | 40.0% | |
| GTATAAACATATGGGGAGCA+TGG | - | chr4.3:22708910-22708929 | MS.gene071702:intron | 40.0% | |
| TACGGCAATCCAAGGTATAA+TGG | - | chr4.3:22708966-22708985 | MS.gene071702:intron | 40.0% | |
| TATGGATATGAAACACCACC+TGG | + | chr4.3:22707592-22707611 | None:intergenic | 40.0% | |
| TGAAGTTCCTTATGGTCTCT+TGG | - | chr4.3:22708195-22708214 | MS.gene071702:intron | 40.0% | |
| TGGAAGATGTCTTTGCACTT+GGG | - | chr4.3:22708418-22708437 | MS.gene071702:CDS | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | - | chr4.3:22708200-22708219 | MS.gene071702:intron | 40.0% | |
| ! | AGTCTGGAGTTTGTCTTATG+CGG | - | chr4.3:22708122-22708141 | MS.gene071702:intron | 40.0% |
| ! | ATGCTTTCTGAAAATCCAGG+TGG | - | chr4.3:22707574-22707593 | MS.gene071702:intron | 40.0% |
| ! | CTGATGCTTTCTGAAAATCC+AGG | - | chr4.3:22707571-22707590 | MS.gene071702:intron | 40.0% |
| ! | TGCAACGAAGCACTTAACAA+AGG | - | chr4.3:22708013-22708032 | MS.gene071702:CDS | 40.0% |
| !! | ACAGAATTGGTGTTGATGGA+TGG | - | chr4.3:22708379-22708398 | MS.gene071702:CDS | 40.0% |
| !! | TTGTTGGCTTCAACATGTGT+TGG | - | chr4.3:22707084-22707103 | MS.gene071702:CDS | 40.0% |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | - | chr4.3:22708447-22708466 | MS.gene071702:CDS | 40.0% |
| ACTGAATCTTCAAGCTCTCC+AGG | - | chr4.3:22708258-22708277 | MS.gene071702:intron | 45.0% | |
| CAGCAACAGACCTGAATTCA+AGG | + | chr4.3:22707113-22707132 | None:intergenic | 45.0% | |
| CAGCACACGTGTAAGATATG+CGG | + | chr4.3:22709176-22709195 | None:intergenic | 45.0% | |
| CCACTAAATTCCACTCCTGT+AGG | + | chr4.3:22707773-22707792 | None:intergenic | 45.0% | |
| CCTACAGGAGTGGAATTTAG+TGG | - | chr4.3:22707770-22707789 | MS.gene071702:CDS | 45.0% | |
| GACAAGCTTGTAATTGCAGC+TGG | - | chr4.3:22707445-22707464 | MS.gene071702:intron | 45.0% | |
| GACCAAACCAAGAGACCATA+AGG | + | chr4.3:22708205-22708224 | None:intergenic | 45.0% | |
| GCAAAGACATCTTCCACAGA+CGG | + | chr4.3:22708414-22708433 | None:intergenic | 45.0% | |
| GCATCCTGTATTCTACCAAC+AGG | + | chr4.3:22707138-22707157 | None:intergenic | 45.0% | |
| GGAAGATGTCTTTGCACTTG+GGG | - | chr4.3:22708419-22708438 | MS.gene071702:CDS | 45.0% | |
| GTGGAAGATGTCTTTGCACT+TGG | - | chr4.3:22708417-22708436 | MS.gene071702:CDS | 45.0% | |
| TGACAGGTTGCTGAAAGACA+AGG | - | chr4.3:22708794-22708813 | MS.gene071702:CDS | 45.0% | |
| TGGGAAACAGAATGGAGGAA+AGG | - | chr4.3:22708847-22708866 | MS.gene071702:intron | 45.0% | |
| TGTTGATCTACGGCAATCCA+AGG | - | chr4.3:22708958-22708977 | MS.gene071702:intron | 45.0% | |
| ! | CAAAGGGATTGTCACTTGCT+GGG | - | chr4.3:22709124-22709143 | MS.gene071702:CDS | 45.0% |
| ! | GTCTGGAGTTTGTCTTATGC+GGG | - | chr4.3:22708123-22708142 | MS.gene071702:intron | 45.0% |
| ! | GTGTTGGTACCCTTGAATTC+AGG | - | chr4.3:22707100-22707119 | MS.gene071702:CDS | 45.0% |
| ! | GTTTTGTCAGCTGGCTGATA+TGG | - | chr4.3:22709146-22709165 | MS.gene071702:CDS | 45.0% |
| ! | TCTGGAGTTTGTCTTATGCG+GGG | - | chr4.3:22708124-22708143 | MS.gene071702:intron | 45.0% |
| ! | TGAGCCTGTTGGTAGAATAC+AGG | - | chr4.3:22707131-22707150 | MS.gene071702:intron | 45.0% |
| !! | GGAGCTGAGCCTTTAACTTT+TGG | - | chr4.3:22707466-22707485 | MS.gene071702:intron | 45.0% |
| !! | TCCAATAGAGGGTACTTGAC+AGG | - | chr4.3:22708618-22708637 | MS.gene071702:intron | 45.0% |
| !! | TTCTTTCTAGCTTCCTGCAC+TGG | - | chr4.3:22707183-22707202 | MS.gene071702:intron | 45.0% |
| AGGCTAACCTGAGCTAAAGC+TGG | + | chr4.3:22708486-22708505 | None:intergenic | 50.0% | |
| AGTTTGTCTTATGCGGGGTG+TGG | - | chr4.3:22708129-22708148 | MS.gene071702:intron | 50.0% | |
| ATCTTACACGTGTGCTGAGC+TGG | - | chr4.3:22709179-22709198 | MS.gene071702:CDS | 50.0% | |
| ATGTCAACAGGTCTACTGCG+AGG | - | chr4.3:22707369-22707388 | MS.gene071702:CDS | 50.0% | |
| GAATCTTCAAGCTCTCCAGG+TGG | - | chr4.3:22708261-22708280 | MS.gene071702:intron | 50.0% | |
| GCCTGTCAAGTACCCTCTAT+TGG | + | chr4.3:22708622-22708641 | None:intergenic | 50.0% | |
| GCTTCGTTGCATACTGTCGA+AGG | + | chr4.3:22708004-22708023 | None:intergenic | 50.0% | |
| GGCATCAGTAGGTGCCTATA+AGG | - | chr4.3:22708931-22708950 | MS.gene071702:intron | 50.0% | |
| GTTATTGGAGGTGGTCCTAC+AGG | - | chr4.3:22707755-22707774 | MS.gene071702:CDS | 50.0% | |
| GTTTGTGTCAACTCCAGTGC+AGG | + | chr4.3:22707199-22707218 | None:intergenic | 50.0% | |
| TACTGCGAGGCAGTTACCAA+TGG | - | chr4.3:22707382-22707401 | MS.gene071702:CDS | 50.0% | |
| TCTGCAGATGGCATCACACT+TGG | - | chr4.3:22708875-22708894 | MS.gene071702:intron | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | - | chr4.3:22708429-22708448 | MS.gene071702:CDS | 50.0% | |
| ! | AGTGCTTCCAGCTTTAGCTC+AGG | - | chr4.3:22708476-22708495 | MS.gene071702:CDS | 50.0% |
| ! | GCAAAGGGATTGTCACTTGC+TGG | - | chr4.3:22709123-22709142 | MS.gene071702:CDS | 50.0% |
| ! | GGAAAGGCTTTGTCTGCAGA+TGG | - | chr4.3:22708863-22708882 | MS.gene071702:intron | 50.0% |
| ! | TGAGCTAAAGCTGGAAGCAC+TGG | + | chr4.3:22708477-22708496 | None:intergenic | 50.0% |
| !! | ACTTGCTGGGTTTTGTCAGC+TGG | - | chr4.3:22709137-22709156 | MS.gene071702:CDS | 50.0% |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | - | chr4.3:22708214-22708233 | MS.gene071702:CDS | 50.0% |
| AGGTCTGTTGCTGAGCCTGT+TGG | - | chr4.3:22707120-22707139 | MS.gene071702:intron | 55.0% | |
| ATGGATGCGTGTTCCGTCTG+TGG | - | chr4.3:22708398-22708417 | MS.gene071702:CDS | 55.0% | |
| CCTGTCAGTGACCAGTGCAT+AGG | + | chr4.3:22708781-22708800 | None:intergenic | 55.0% | |
| CTGTCGAAGGCCAACGTCAA+AGG | + | chr4.3:22707991-22708010 | None:intergenic | 55.0% | |
| CTTCAAGCTCTCCAGGTGGA+AGG | - | chr4.3:22708265-22708284 | MS.gene071702:intron | 55.0% | |
| GGCTTCACATACCTTCCACC+TGG | + | chr4.3:22708279-22708298 | None:intergenic | 55.0% | |
| TCTTATGCGGGGTGTGGTGA+AGG | - | chr4.3:22708135-22708154 | MS.gene071702:intron | 55.0% | |
| TGCGAGGCAGTTACCAATGG+TGG | - | chr4.3:22707385-22707404 | MS.gene071702:CDS | 55.0% | |
| TTACACGTGTGCTGAGCTGG+AGG | - | chr4.3:22709182-22709201 | MS.gene071702:CDS | 55.0% | |
| ! | ATGGGGAGCATGGCATCAGT+AGG | - | chr4.3:22708920-22708939 | MS.gene071702:intron | 55.0% |
| ! | CCTATGCACTGGTCACTGAC+AGG | - | chr4.3:22708778-22708797 | MS.gene071702:CDS | 55.0% |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | - | chr4.3:22708208-22708227 | MS.gene071702:CDS | 55.0% |
| CTCAGAGGGACCAACTCCTG+TGG | + | chr4.3:22708227-22708246 | None:intergenic | 60.0% | |
| TATGCGGGGTGTGGTGAAGG+AGG | - | chr4.3:22708138-22708157 | MS.gene071702:intron | 60.0% | |
| TGGAGGTGGTCCTACAGGAG+TGG | - | chr4.3:22707760-22707779 | MS.gene071702:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 22707032 | 22709209 | 22707032 | ID=MS.gene071702 |
| chr4.3 | mRNA | 22707032 | 22709209 | 22707032 | ID=MS.gene071702.t1;Parent=MS.gene071702 |
| chr4.3 | exon | 22709014 | 22709209 | 22709014 | ID=MS.gene071702.t1.exon1;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22709014 | 22709209 | 22709014 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22708649 | 22708862 | 22708649 | ID=MS.gene071702.t1.exon2;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22708649 | 22708862 | 22708649 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22708367 | 22708527 | 22708367 | ID=MS.gene071702.t1.exon3;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22708367 | 22708527 | 22708367 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22708207 | 22708272 | 22708207 | ID=MS.gene071702.t1.exon4;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22708207 | 22708272 | 22708207 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22707951 | 22708117 | 22707951 | ID=MS.gene071702.t1.exon5;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22707951 | 22708117 | 22707951 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22707744 | 22707858 | 22707744 | ID=MS.gene071702.t1.exon6;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22707744 | 22707858 | 22707744 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22707272 | 22707441 | 22707272 | ID=MS.gene071702.t1.exon7;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22707272 | 22707441 | 22707272 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| chr4.3 | exon | 22707032 | 22707121 | 22707032 | ID=MS.gene071702.t1.exon8;Parent=MS.gene071702.t1 |
| chr4.3 | CDS | 22707032 | 22707121 | 22707032 | ID=cds.MS.gene071702.t1;Parent=MS.gene071702.t1 |
| Gene Sequence |
| Protein sequence |
