Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071714.t1 | XP_003629034.1 | 85.1 | 194 | 4 | 3 | 1 | 170 | 72 | 264 | 2.70E-90 | 341.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071714.t1 | Q9ZV87 | 61.0 | 200 | 47 | 7 | 1 | 170 | 71 | 269 | 6.0e-62 | 238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071714.t1 | G7L7V8 | 85.1 | 194 | 4 | 3 | 1 | 170 | 72 | 264 | 2.0e-90 | 341.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056583 | MS.gene071714 | 0.804958 | 1.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGCAATGTGGGGATTTA+AGG | 0.153117 | 8.3:+30330822 | MS.gene071714:CDS |
| AAGAAGATTAACATAATTAT+TGG | 0.205505 | 8.3:+30334993 | MS.gene071714:CDS |
| ATCCAAACCATCGGAAGTTT+TGG | 0.236147 | 8.3:-30335102 | None:intergenic |
| TCCCCATTTCAATCGCCTTA+TGG | 0.245711 | 8.3:-30333775 | None:intergenic |
| CCCCATTTCAATCGCCTTAT+GGG | 0.322930 | 8.3:-30333774 | None:intergenic |
| GTGTTGCCATGGAGAAATTA+AGG | 0.335963 | 8.3:+30335170 | MS.gene071714:CDS |
| CCCTTAAATCCCCACATTGC+CGG | 0.349420 | 8.3:-30330823 | None:intergenic |
| TTAATCTTCTTATTGCATAA+TGG | 0.350456 | 8.3:-30334981 | None:intergenic |
| CCGGCAATGTGGGGATTTAA+GGG | 0.352422 | 8.3:+30330823 | MS.gene071714:CDS |
| GCCCAAAACTTCCGATGGTT+TGG | 0.352965 | 8.3:+30335100 | MS.gene071714:CDS |
| GCACATGAATGAAGCGCTTT+GGG | 0.374833 | 8.3:+30332068 | MS.gene071714:CDS |
| GGCAATACAATCGGAGTTAT+AGG | 0.380006 | 8.3:-30333822 | None:intergenic |
| GCTGGAAGGTCAAATTCAAT+TGG | 0.397107 | 8.3:-30335020 | None:intergenic |
| CACCCATAAGGCGATTGAAA+TGG | 0.400448 | 8.3:+30333772 | MS.gene071714:CDS |
| AGCACATGAATGAAGCGCTT+TGG | 0.401395 | 8.3:+30332067 | MS.gene071714:CDS |
| TGAAAACCATGATGAACAAT+TGG | 0.407703 | 8.3:-30333843 | None:intergenic |
| ACCCATAAGGCGATTGAAAT+GGG | 0.410412 | 8.3:+30333773 | MS.gene071714:CDS |
| ATAGCCATTTCACTCATTGC+TGG | 0.413100 | 8.3:-30335038 | None:intergenic |
| ACCTATTACAAGAGGTGGGG+GGG | 0.420409 | 8.3:+30332032 | MS.gene071714:CDS |
| GGAATGAATCATTCCGAGAC+TGG | 0.443898 | 8.3:-30335064 | None:intergenic |
| CTACCAAACATATATTTCTC+TGG | 0.451010 | 8.3:-30334945 | None:intergenic |
| AATGATTCATTCCCTGCTAT+CGG | 0.460627 | 8.3:+30335074 | MS.gene071714:CDS |
| CCTTCCAGCAATGAGTGAAA+TGG | 0.466140 | 8.3:+30335034 | MS.gene071714:CDS |
| ATGCCAGAGAAATATATGTT+TGG | 0.471220 | 8.3:+30334942 | MS.gene071714:CDS |
| TTGTTGCAGTTTGGATGATC+CGG | 0.474093 | 8.3:+30330804 | None:intergenic |
| TTCTTATTGCATAATGGTAA+AGG | 0.476447 | 8.3:-30334975 | None:intergenic |
| TGCATACCTATTACAAGAGG+TGG | 0.488641 | 8.3:+30332027 | MS.gene071714:CDS |
| GTATTGCCAATTGTTCATCA+TGG | 0.490395 | 8.3:+30333837 | MS.gene071714:CDS |
| TTTGGATGATCCGGCAATGT+GGG | 0.498103 | 8.3:+30330813 | MS.gene071714:CDS |
| ATGATTCATTCCCTGCTATC+GGG | 0.503118 | 8.3:+30335075 | MS.gene071714:CDS |
| CAGAGAAATTCGTGTTGCCA+TGG | 0.508537 | 8.3:+30335159 | MS.gene071714:CDS |
| TGAACAATTGGCAATACAAT+CGG | 0.512162 | 8.3:-30333831 | None:intergenic |
| ATCAAGACGATGCACCCATA+AGG | 0.516940 | 8.3:+30333760 | MS.gene071714:CDS |
| AACTTCCGATGGTTTGGATG+AGG | 0.529543 | 8.3:+30335106 | MS.gene071714:CDS |
| TACCTATTACAAGAGGTGGG+GGG | 0.555573 | 8.3:+30332031 | MS.gene071714:CDS |
| TGCTGCCTCATCCAAACCAT+CGG | 0.562631 | 8.3:-30335111 | None:intergenic |
| GCATACCTATTACAAGAGGT+GGG | 0.571063 | 8.3:+30332028 | MS.gene071714:CDS |
| AAATGGCTATTGCCCAGTCT+CGG | 0.571200 | 8.3:+30335051 | MS.gene071714:CDS |
| ATAACACCTTAATTTCTCCA+TGG | 0.579558 | 8.3:-30335176 | None:intergenic |
| CCATTTCACTCATTGCTGGA+AGG | 0.590388 | 8.3:-30335034 | None:intergenic |
| GAATGAATCATTCCGAGACT+GGG | 0.595529 | 8.3:-30335063 | None:intergenic |
| ATACCTATTACAAGAGGTGG+GGG | 0.605481 | 8.3:+30332030 | MS.gene071714:CDS |
| TTGGATGATCCGGCAATGTG+GGG | 0.611624 | 8.3:+30330814 | MS.gene071714:CDS |
| GGGTGGCCCAAAACTTCCGA+TGG | 0.612018 | 8.3:+30335095 | MS.gene071714:CDS |
| CATACCTATTACAAGAGGTG+GGG | 0.631010 | 8.3:+30332029 | MS.gene071714:CDS |
| TTATTGCATAATGGTAAAGG+AGG | 0.636529 | 8.3:-30334972 | None:intergenic |
| ATTCATTCCCTGCTATCGGG+TGG | 0.650574 | 8.3:+30335078 | MS.gene071714:CDS |
| GTTTGGATGATCCGGCAATG+TGG | 0.650697 | 8.3:+30330812 | None:intergenic |
| CCCATAAGGCGATTGAAATG+GGG | 0.650823 | 8.3:+30333774 | MS.gene071714:CDS |
| CAATCGGAGTTATAGGTGCA+CGG | 0.652808 | 8.3:-30333815 | None:intergenic |
| AAATGCATACCTATTACAAG+AGG | 0.660468 | 8.3:+30332024 | MS.gene071714:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAAAGGTCTATT+TGG | + | chr8.3:30331426-30331445 | MS.gene071714:intron | 15.0% |
| !! | AAATCAAATTAAAACTAATC+AGG | - | chr8.3:30330963-30330982 | None:intergenic | 15.0% |
| !! | AAGAAGATTAACATAATTAT+TGG | + | chr8.3:30334993-30335012 | MS.gene071714:CDS | 15.0% |
| !! | AATCAAATTAAAACTAATCA+GGG | - | chr8.3:30330962-30330981 | None:intergenic | 15.0% |
| !! | CAATTACTCAAAAATAATAA+AGG | + | chr8.3:30331417-30331436 | MS.gene071714:intron | 15.0% |
| !! | CAGTCAAATAAAAAAAAAAT+AGG | - | chr8.3:30333300-30333319 | None:intergenic | 15.0% |
| !!! | ATAATCATTTTAATTAGAAC+TGG | + | chr8.3:30334101-30334120 | MS.gene071714:intron | 15.0% |
| !!! | ATTTCATTTTCACAAATAAT+AGG | - | chr8.3:30332972-30332991 | None:intergenic | 15.0% |
| !!! | TAATCATTTTAATTAGAACT+GGG | + | chr8.3:30334102-30334121 | MS.gene071714:intron | 15.0% |
| !!! | TATTATCTTAATCTTTTGAT+TGG | - | chr8.3:30334451-30334470 | None:intergenic | 15.0% |
| !!! | TATTTTAATAAACTACATTC+TGG | + | chr8.3:30333001-30333020 | MS.gene071714:intron | 15.0% |
| !! | AATTATCACCATAATAATCA+AGG | - | chr8.3:30331632-30331651 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAAAGTCTAGTA+CGG | - | chr8.3:30334615-30334634 | None:intergenic | 20.0% |
| !! | AGAACAAAAGCTATAAAAAT+TGG | + | chr8.3:30333359-30333378 | MS.gene071714:intron | 20.0% |
| !! | AGAACATAATACAAGAAATA+TGG | - | chr8.3:30334719-30334738 | None:intergenic | 20.0% |
| !! | AGAATTCTCAAAGAAAAAAT+TGG | - | chr8.3:30332565-30332584 | None:intergenic | 20.0% |
| !! | AGATTGTTTACCAAATAAAA+AGG | - | chr8.3:30332807-30332826 | None:intergenic | 20.0% |
| !! | ATAATGAGAATGAATATTCA+GGG | + | chr8.3:30332461-30332480 | MS.gene071714:intron | 20.0% |
| !! | ATTAAGCGATAAAAAAAATC+TGG | - | chr8.3:30333099-30333118 | None:intergenic | 20.0% |
| !! | ATTATCACCATAATAATCAA+GGG | - | chr8.3:30331631-30331650 | None:intergenic | 20.0% |
| !! | TAATAACCAATAAAACAGAA+GGG | - | chr8.3:30333270-30333289 | None:intergenic | 20.0% |
| !! | TACAAAATATAGTCAAATAG+CGG | - | chr8.3:30331081-30331100 | None:intergenic | 20.0% |
| !! | TATAAATTTGTCGTAACAAA+AGG | + | chr8.3:30334310-30334329 | MS.gene071714:intron | 20.0% |
| !! | TATAATGAGAATGAATATTC+AGG | + | chr8.3:30332460-30332479 | MS.gene071714:intron | 20.0% |
| !! | TCTTTACTATTTAGTGTAAT+TGG | + | chr8.3:30331897-30331916 | MS.gene071714:intron | 20.0% |
| !! | TGCATAAAAAAAACCAAAAT+TGG | + | chr8.3:30331663-30331682 | MS.gene071714:intron | 20.0% |
| !! | TTAATCTTCTTATTGCATAA+TGG | - | chr8.3:30334984-30335003 | None:intergenic | 20.0% |
| !!! | AAAATCATAGAAAAGTTTTC+AGG | - | chr8.3:30331955-30331974 | None:intergenic | 20.0% |
| !!! | AGAACAAATTTTGAAATCAA+GGG | + | chr8.3:30331702-30331721 | MS.gene071714:intron | 20.0% |
| !!! | AGTTTTGTTGTTTCTAAAAA+TGG | + | chr8.3:30331987-30332006 | MS.gene071714:intron | 20.0% |
| !!! | ATTTTGCATCATGAATTTAT+AGG | - | chr8.3:30334083-30334102 | None:intergenic | 20.0% |
| !!! | TATTTGACTATATTTTGTAG+TGG | + | chr8.3:30331082-30331101 | MS.gene071714:intron | 20.0% |
| !!! | TTTCCTTGCTTTTTATATTT+GGG | + | chr8.3:30333462-30333481 | MS.gene071714:intron | 20.0% |
| ! | AAGCATTAAGAAAAAGATCA+TGG | - | chr8.3:30334263-30334282 | None:intergenic | 25.0% |
| ! | AATGTGAAAACTAAACATAC+CGG | - | chr8.3:30330939-30330958 | None:intergenic | 25.0% |
| ! | ATATATCTTAAGCATACGAT+TGG | + | chr8.3:30334559-30334578 | MS.gene071714:intron | 25.0% |
| ! | CCAAATAATTAGAAAATGAC+AGG | - | chr8.3:30334207-30334226 | None:intergenic | 25.0% |
| ! | CGAAAAACATATGAATAAAG+TGG | - | chr8.3:30330914-30330933 | None:intergenic | 25.0% |
| ! | CTAATAACCAATAAAACAGA+AGG | - | chr8.3:30333271-30333290 | None:intergenic | 25.0% |
| ! | CTTATACATATGCTCTTATA+TGG | + | chr8.3:30331298-30331317 | MS.gene071714:intron | 25.0% |
| ! | GCTAACTTAGTATCAAATAT+AGG | - | chr8.3:30330852-30330871 | None:intergenic | 25.0% |
| ! | TAATGAGAATGAATATTCAG+GGG | + | chr8.3:30332462-30332481 | MS.gene071714:intron | 25.0% |
| ! | TGTGATTCATATTTAGAAAC+TGG | + | chr8.3:30334667-30334686 | MS.gene071714:intron | 25.0% |
| ! | TTCTTATTGCATAATGGTAA+AGG | - | chr8.3:30334978-30334997 | None:intergenic | 25.0% |
| !! | AATTTCTGCTTATGTTTTCT+AGG | + | chr8.3:30334917-30334936 | MS.gene071714:intron | 25.0% |
| !! | ACTCTTTTACGATGATAATT+TGG | + | chr8.3:30332156-30332175 | MS.gene071714:intron | 25.0% |
| !! | ATTCTCATTATAACACCTTT+TGG | - | chr8.3:30332452-30332471 | None:intergenic | 25.0% |
| !! | CTCTTTTACGATGATAATTT+GGG | + | chr8.3:30332157-30332176 | MS.gene071714:intron | 25.0% |
| !! | GAATTTAGTTGTTAGACTTT+TGG | + | chr8.3:30333992-30334011 | MS.gene071714:intron | 25.0% |
| !!! | ATTCTCTACTCTGAAATATT+GGG | + | chr8.3:30333182-30333201 | MS.gene071714:intron | 25.0% |
| !!! | CCTGTCATTTTCTAATTATT+TGG | + | chr8.3:30334204-30334223 | MS.gene071714:intron | 25.0% |
| !!! | CTTTCCTTGCTTTTTATATT+TGG | + | chr8.3:30333461-30333480 | MS.gene071714:intron | 25.0% |
| !!! | GAGAACAAATTTTGAAATCA+AGG | + | chr8.3:30331701-30331720 | MS.gene071714:intron | 25.0% |
| !!! | TATTCTCTACTCTGAAATAT+TGG | + | chr8.3:30333181-30333200 | MS.gene071714:intron | 25.0% |
| !!! | TCTTGTTTTTGATGCATTTA+TGG | + | chr8.3:30332661-30332680 | MS.gene071714:intron | 25.0% |
| !!! | TGTTGGTTTTCCTTTTTATT+TGG | + | chr8.3:30332794-30332813 | MS.gene071714:intron | 25.0% |
| AAAAAAATCTGGTGAAGTTG+AGG | - | chr8.3:30333088-30333107 | None:intergenic | 30.0% | |
| AAATAGCTATTGTTCTGTGT+TGG | + | chr8.3:30331114-30331133 | MS.gene071714:intron | 30.0% | |
| AAATATAGACGATGCACAAA+AGG | - | chr8.3:30331804-30331823 | None:intergenic | 30.0% | |
| AAATGACAGGACATATATCA+AGG | - | chr8.3:30334194-30334213 | None:intergenic | 30.0% | |
| AAATGCATACCTATTACAAG+AGG | + | chr8.3:30332024-30332043 | MS.gene071714:CDS | 30.0% | |
| AACAAGAATCACAAGAGTAA+TGG | - | chr8.3:30334761-30334780 | None:intergenic | 30.0% | |
| ACTCAACTATACATTAACAC+AGG | - | chr8.3:30331375-30331394 | None:intergenic | 30.0% | |
| AGTGCTACAAATGGTATATA+AGG | - | chr8.3:30333924-30333943 | None:intergenic | 30.0% | |
| ATAGTAATGACATGTATCGA+TGG | + | chr8.3:30334128-30334147 | MS.gene071714:intron | 30.0% | |
| ATGCCAGAGAAATATATGTT+TGG | + | chr8.3:30334942-30334961 | MS.gene071714:CDS | 30.0% | |
| CAAACTAAACTTGGACTAAT+TGG | + | chr8.3:30331856-30331875 | MS.gene071714:intron | 30.0% | |
| CTAAAAATGGTAACATTCAC+AGG | + | chr8.3:30332000-30332019 | MS.gene071714:intron | 30.0% | |
| CTACCAAACATATATTTCTC+TGG | - | chr8.3:30334948-30334967 | None:intergenic | 30.0% | |
| CTACTTGTGAGAATTATTGA+AGG | + | chr8.3:30334387-30334406 | MS.gene071714:intron | 30.0% | |
| TAATAAAGGTCTATTTGGTC+TGG | + | chr8.3:30331431-30331450 | MS.gene071714:intron | 30.0% | |
| TATCCCATCCTATCTTATTA+GGG | - | chr8.3:30331540-30331559 | None:intergenic | 30.0% | |
| TCTTTCGTAAAGAGAAATTG+TGG | + | chr8.3:30332874-30332893 | MS.gene071714:intron | 30.0% | |
| TGAAAACCATGATGAACAAT+TGG | - | chr8.3:30333846-30333865 | None:intergenic | 30.0% | |
| TGAACAATTGGCAATACAAT+CGG | - | chr8.3:30333834-30333853 | None:intergenic | 30.0% | |
| TTATTGCATAATGGTAAAGG+AGG | - | chr8.3:30334975-30334994 | None:intergenic | 30.0% | |
| TTCTCAACCCTTGATTATTA+TGG | + | chr8.3:30331621-30331640 | MS.gene071714:intron | 30.0% | |
| TTGAAAACATGTGTGAGAAA+TGG | + | chr8.3:30331494-30331513 | MS.gene071714:intron | 30.0% | |
| TTTCCCTAATAAGATAGGAT+GGG | + | chr8.3:30331534-30331553 | MS.gene071714:intron | 30.0% | |
| ! | AAGCAGTTCATAGAAGTATA+GGG | + | chr8.3:30333220-30333239 | MS.gene071714:intron | 30.0% |
| ! | AGTTTGTTCAACTTCAACTA+CGG | - | chr8.3:30331228-30331247 | None:intergenic | 30.0% |
| ! | ATAGAAGTATAGGGATAAAC+AGG | + | chr8.3:30333229-30333248 | MS.gene071714:intron | 30.0% |
| ! | ATCAGCAGTATTTTCTTACA+AGG | + | chr8.3:30334039-30334058 | MS.gene071714:intron | 30.0% |
| ! | CTGAAGTACTATATAGTGAT+TGG | - | chr8.3:30331774-30331793 | None:intergenic | 30.0% |
| ! | TAACAAATCGTCACCAATTT+TGG | - | chr8.3:30331679-30331698 | None:intergenic | 30.0% |
| ! | TATTCATATGTTTTTCGCAC+CGG | + | chr8.3:30330917-30330936 | MS.gene071714:CDS | 30.0% |
| ! | TTCAGAGAACTTTCCATTTT+GGG | - | chr8.3:30333660-30333679 | None:intergenic | 30.0% |
| ! | TTGATTGGTCATTGTTCAAT+GGG | - | chr8.3:30334436-30334455 | None:intergenic | 30.0% |
| ! | TTTGATTGGTCATTGTTCAA+TGG | - | chr8.3:30334437-30334456 | None:intergenic | 30.0% |
| ! | TTTTCCCTAATAAGATAGGA+TGG | + | chr8.3:30331533-30331552 | MS.gene071714:intron | 30.0% |
| !! | AATCACTCATAGCTTTGATT+TGG | - | chr8.3:30332527-30332546 | None:intergenic | 30.0% |
| !! | ATAAGATTGCGTTGATTTCA+TGG | + | chr8.3:30333382-30333401 | MS.gene071714:intron | 30.0% |
| !! | TAAGATTGCGTTGATTTCAT+GGG | + | chr8.3:30333383-30333402 | MS.gene071714:intron | 30.0% |
| !! | TAATTTCGTTATGCTGATTC+TGG | + | chr8.3:30334883-30334902 | MS.gene071714:intron | 30.0% |
| !! | TCAATTAGAAGTGCTACAAA+TGG | - | chr8.3:30333933-30333952 | None:intergenic | 30.0% |
| !! | TTTTCTCGGTTGATGTTAAA+TGG | + | chr8.3:30332246-30332265 | MS.gene071714:intron | 30.0% |
| !!! | AACTTGGTATCTTTTAGTTC+TGG | - | chr8.3:30333585-30333604 | None:intergenic | 30.0% |
| !!! | AGTTGTTAGACTTTTGGAAT+TGG | + | chr8.3:30333998-30334017 | MS.gene071714:intron | 30.0% |
| !!! | GTTTTATTTGCATGACCATT+GGG | + | chr8.3:30333319-30333338 | MS.gene071714:intron | 30.0% |
| !!! | TGTTTTATTTGCATGACCAT+TGG | + | chr8.3:30333318-30333337 | MS.gene071714:intron | 30.0% |
| !!! | TTATTGTCCTTGCTTTTTCT+CGG | + | chr8.3:30332232-30332251 | MS.gene071714:intron | 30.0% |
| AAAACTCTTAGCGATACTAG+AGG | - | chr8.3:30332213-30332232 | None:intergenic | 35.0% | |
| AAACTCTTAGCGATACTAGA+GGG | - | chr8.3:30332212-30332231 | None:intergenic | 35.0% | |
| AAATGGAAAGTTCTCTGAAC+TGG | + | chr8.3:30333661-30333680 | MS.gene071714:intron | 35.0% | |
| AATGATTCATTCCCTGCTAT+CGG | + | chr8.3:30335074-30335093 | MS.gene071714:CDS | 35.0% | |
| ATAGGGATAAACAGGTTTGT+GGG | + | chr8.3:30333237-30333256 | MS.gene071714:intron | 35.0% | |
| ATCAATTGTCAAACACCCAA+TGG | - | chr8.3:30333337-30333356 | None:intergenic | 35.0% | |
| CTAAACTTGGACTAATTGGA+AGG | + | chr8.3:30331860-30331879 | MS.gene071714:intron | 35.0% | |
| CTAATAAGATAGGATGGGAT+AGG | + | chr8.3:30331539-30331558 | MS.gene071714:intron | 35.0% | |
| CTATCCCATCCTATCTTATT+AGG | - | chr8.3:30331541-30331560 | None:intergenic | 35.0% | |
| CTATGGATCATCTCATATTC+TGG | - | chr8.3:30332307-30332326 | None:intergenic | 35.0% | |
| CTCTTTCCTCTAATACCTTT+GGG | + | chr8.3:30333886-30333905 | MS.gene071714:intron | 35.0% | |
| GAATATGAGATGATCCATAG+AGG | + | chr8.3:30332307-30332326 | MS.gene071714:intron | 35.0% | |
| GATTTCATGGGTAAATTCAG+AGG | + | chr8.3:30333395-30333414 | MS.gene071714:intron | 35.0% | |
| GCATTAAGACAATTGCAGAT+CGG | - | chr8.3:30334644-30334663 | None:intergenic | 35.0% | |
| GCTGCTTATCTTGAAAATGT+GGG | + | chr8.3:30333023-30333042 | MS.gene071714:intron | 35.0% | |
| GTATTGCCAATTGTTCATCA+TGG | + | chr8.3:30333837-30333856 | MS.gene071714:CDS | 35.0% | |
| GTGCCCAAATATAAAAAGCA+AGG | - | chr8.3:30333468-30333487 | None:intergenic | 35.0% | |
| TAATGCTTGCTTTCTTCTCA+AGG | + | chr8.3:30334275-30334294 | MS.gene071714:intron | 35.0% | |
| TATAGGGATAAACAGGTTTG+TGG | + | chr8.3:30333236-30333255 | MS.gene071714:intron | 35.0% | |
| TCTTTCCTCTAATACCTTTG+GGG | + | chr8.3:30333887-30333906 | MS.gene071714:intron | 35.0% | |
| TGATACTAAGTTAGCCAGAT+GGG | + | chr8.3:30330857-30330876 | MS.gene071714:intron | 35.0% | |
| TGCAAGAGATTAGAGATCAA+AGG | + | chr8.3:30334360-30334379 | MS.gene071714:intron | 35.0% | |
| TTCGCTTTGCAAACTAAACT+TGG | + | chr8.3:30331847-30331866 | MS.gene071714:intron | 35.0% | |
| TTGATACTAAGTTAGCCAGA+TGG | + | chr8.3:30330856-30330875 | MS.gene071714:intron | 35.0% | |
| TTGTTATCCATGGCAGAAAA+TGG | - | chr8.3:30332614-30332633 | None:intergenic | 35.0% | |
| TTGTTCTGTGTTGGATATTC+AGG | + | chr8.3:30331123-30331142 | MS.gene071714:intron | 35.0% | |
| ! | AATCTTTCTTGTGTGTCACT+GGG | + | chr8.3:30332822-30332841 | MS.gene071714:intron | 35.0% |
| ! | CAAGCAGTTCATAGAAGTAT+AGG | + | chr8.3:30333219-30333238 | MS.gene071714:intron | 35.0% |
| ! | GATGCATTTATGGACTGAAT+TGG | + | chr8.3:30332671-30332690 | MS.gene071714:intron | 35.0% |
| ! | GTATGTCCCTTCTGTTTTAT+TGG | + | chr8.3:30333261-30333280 | MS.gene071714:intron | 35.0% |
| ! | GTTCAGAGAACTTTCCATTT+TGG | - | chr8.3:30333661-30333680 | None:intergenic | 35.0% |
| ! | TATTTGGGCACACTATTTTC+TGG | + | chr8.3:30333477-30333496 | MS.gene071714:intron | 35.0% |
| ! | TCAGAGAACTTTCCATTTTG+GGG | - | chr8.3:30333659-30333678 | None:intergenic | 35.0% |
| ! | TCTTGATGAACTTTTCCTTC+TGG | - | chr8.3:30333747-30333766 | None:intergenic | 35.0% |
| ! | TGTACTCCTCTATTACGTTT+TGG | + | chr8.3:30333505-30333524 | MS.gene071714:intron | 35.0% |
| ! | TGTTCATCATGGTTTTCATG+AGG | + | chr8.3:30333848-30333867 | MS.gene071714:CDS | 35.0% |
| ! | TTGAGCTTGATTTGACTAAG+AGG | - | chr8.3:30332940-30332959 | None:intergenic | 35.0% |
| !! | ACTCTGAAATATTGGGTGAT+TGG | + | chr8.3:30333189-30333208 | MS.gene071714:intron | 35.0% |
| !! | CAGTTAAAGCTTGTTATCCA+TGG | - | chr8.3:30332624-30332643 | None:intergenic | 35.0% |
| !! | GTCGTTTTCCCTAATAAGAT+AGG | + | chr8.3:30331529-30331548 | MS.gene071714:intron | 35.0% |
| !! | GTTTAGTTTGCAAAGCGAAA+TGG | - | chr8.3:30331846-30331865 | None:intergenic | 35.0% |
| !! | GTTTCAGAACTTCTGAAACT+TGG | - | chr8.3:30333601-30333620 | None:intergenic | 35.0% |
| !!! | GTCTGGCTTTTTTCTTTGTT+TGG | + | chr8.3:30331448-30331467 | MS.gene071714:intron | 35.0% |
| ACATCAACCGAGAAAAAGCA+AGG | - | chr8.3:30332242-30332261 | None:intergenic | 40.0% | |
| ACATTGCTATAGTGCTACCA+TGG | + | chr8.3:30331052-30331071 | MS.gene071714:intron | 40.0% | |
| ACCCATAAGGCGATTGAAAT+GGG | + | chr8.3:30333773-30333792 | MS.gene071714:CDS | 40.0% | |
| ACTCAGTTGTGGAAAGTTGA+TGG | - | chr8.3:30333421-30333440 | None:intergenic | 40.0% | |
| ATACCTATTACAAGAGGTGG+GGG | + | chr8.3:30332030-30332049 | MS.gene071714:CDS | 40.0% | |
| ATAGCCATTTCACTCATTGC+TGG | - | chr8.3:30335041-30335060 | None:intergenic | 40.0% | |
| ATCCATAGAGGACAGATAGT+AGG | + | chr8.3:30332319-30332338 | MS.gene071714:intron | 40.0% | |
| ATCTCCATAGAAGTTGCACA+CGG | - | chr8.3:30333542-30333561 | None:intergenic | 40.0% | |
| ATGATTCATTCCCTGCTATC+GGG | + | chr8.3:30335075-30335094 | MS.gene071714:CDS | 40.0% | |
| CAATCTTTCTTGTGTGTCAC+TGG | + | chr8.3:30332821-30332840 | MS.gene071714:intron | 40.0% | |
| CATACCTATTACAAGAGGTG+GGG | + | chr8.3:30332029-30332048 | MS.gene071714:CDS | 40.0% | |
| CATTGCTATAGTGCTACCAT+GGG | + | chr8.3:30331053-30331072 | MS.gene071714:intron | 40.0% | |
| CCTCTTTCCTCTAATACCTT+TGG | + | chr8.3:30333885-30333904 | MS.gene071714:intron | 40.0% | |
| CTTACTCTGTAGCATCCAAA+AGG | + | chr8.3:30332434-30332453 | MS.gene071714:intron | 40.0% | |
| GAATGAATCATTCCGAGACT+GGG | - | chr8.3:30335066-30335085 | None:intergenic | 40.0% | |
| GCATACCTATTACAAGAGGT+GGG | + | chr8.3:30332028-30332047 | MS.gene071714:CDS | 40.0% | |
| GCTGGAAGGTCAAATTCAAT+TGG | - | chr8.3:30335023-30335042 | None:intergenic | 40.0% | |
| GGCAATACAATCGGAGTTAT+AGG | - | chr8.3:30333825-30333844 | None:intergenic | 40.0% | |
| GGCTGCTTATCTTGAAAATG+TGG | + | chr8.3:30333022-30333041 | MS.gene071714:intron | 40.0% | |
| GTAAGTAACAGACTCTCACT+AGG | - | chr8.3:30332419-30332438 | None:intergenic | 40.0% | |
| GTGATGTCAATCGTAGATCA+TGG | - | chr8.3:30331259-30331278 | None:intergenic | 40.0% | |
| TGAGAATGAATATTCAGGGG+AGG | + | chr8.3:30332465-30332484 | MS.gene071714:intron | 40.0% | |
| TGCATACCTATTACAAGAGG+TGG | + | chr8.3:30332027-30332046 | MS.gene071714:CDS | 40.0% | |
| ! | AAAAGAGTATGCTTGTGTGG+AGG | - | chr8.3:30332144-30332163 | None:intergenic | 40.0% |
| ! | AAAGAGTATGCTTGTGTGGA+GGG | - | chr8.3:30332143-30332162 | None:intergenic | 40.0% |
| ! | ATCCAAACCATCGGAAGTTT+TGG | - | chr8.3:30335105-30335124 | None:intergenic | 40.0% |
| ! | CGTAAAAGAGTATGCTTGTG+TGG | - | chr8.3:30332147-30332166 | None:intergenic | 40.0% |
| ! | CTCTAACAACGAAAGCGTAT+CGG | + | chr8.3:30331595-30331614 | MS.gene071714:intron | 40.0% |
| ! | GCGCTTAAATGATGGAGAAT+GGG | + | chr8.3:30332090-30332109 | MS.gene071714:intron | 40.0% |
| ! | TCCAAACCATCGGAAGTTTT+GGG | - | chr8.3:30335104-30335123 | None:intergenic | 40.0% |
| ! | TGGTTGCTAGAGCTTTGATT+TGG | - | chr8.3:30332594-30332613 | None:intergenic | 40.0% |
| !! | CCAAAGGTATTAGAGGAAAG+AGG | - | chr8.3:30333888-30333907 | None:intergenic | 40.0% |
| !! | TCCTCTATTACGTTTTGGCA+GGG | + | chr8.3:30333510-30333529 | MS.gene071714:intron | 40.0% |
| !! | TGCATTTTAGTGCCCCAAAA+TGG | + | chr8.3:30333644-30333663 | MS.gene071714:intron | 40.0% |
| AAATGGCTATTGCCCAGTCT+CGG | + | chr8.3:30335051-30335070 | MS.gene071714:CDS | 45.0% | |
| AACATCTCCAACGGTTACAG+CGG | + | chr8.3:30331186-30331205 | MS.gene071714:intron | 45.0% | |
| AAGAAGCCACTGTGGTTTAG+TGG | + | chr8.3:30332903-30332922 | MS.gene071714:intron | 45.0% | |
| ACCCTGCCAAAACGTAATAG+AGG | - | chr8.3:30333514-30333533 | None:intergenic | 45.0% | |
| ACTACGAGCACAGTGCTTAT+TGG | - | chr8.3:30334589-30334608 | None:intergenic | 45.0% | |
| AGAAGCCACTGTGGTTTAGT+GGG | + | chr8.3:30332904-30332923 | MS.gene071714:intron | 45.0% | |
| AGGATGGGATAGGAACATGT+GGG | + | chr8.3:30331549-30331568 | MS.gene071714:intron | 45.0% | |
| AGTAGGCACCTATTGTCTCA+TGG | + | chr8.3:30332336-30332355 | MS.gene071714:intron | 45.0% | |
| ATCAAGACGATGCACCCATA+AGG | + | chr8.3:30333760-30333779 | MS.gene071714:CDS | 45.0% | |
| ATCTCCGTGTGCAACTTCTA+TGG | + | chr8.3:30333535-30333554 | MS.gene071714:intron | 45.0% | |
| CAATCGGAGTTATAGGTGCA+CGG | - | chr8.3:30333818-30333837 | None:intergenic | 45.0% | |
| CACCCATAAGGCGATTGAAA+TGG | + | chr8.3:30333772-30333791 | MS.gene071714:CDS | 45.0% | |
| CAGAGAAATTCGTGTTGCCA+TGG | + | chr8.3:30335159-30335178 | MS.gene071714:CDS | 45.0% | |
| CCATTTCACTCATTGCTGGA+AGG | - | chr8.3:30335037-30335056 | None:intergenic | 45.0% | |
| CCCATAAGGCGATTGAAATG+GGG | + | chr8.3:30333774-30333793 | MS.gene071714:CDS | 45.0% | |
| CCCCATTTCAATCGCCTTAT+GGG | - | chr8.3:30333777-30333796 | None:intergenic | 45.0% | |
| CCTTCCAGCAATGAGTGAAA+TGG | + | chr8.3:30335034-30335053 | MS.gene071714:CDS | 45.0% | |
| CTCATGGGTCAACACTTGAT+AGG | + | chr8.3:30332352-30332371 | MS.gene071714:intron | 45.0% | |
| GAAGAGTAGCGATGCAAAGA+AGG | + | chr8.3:30332695-30332714 | MS.gene071714:intron | 45.0% | |
| GGAATGAATCATTCCGAGAC+TGG | - | chr8.3:30335067-30335086 | None:intergenic | 45.0% | |
| GGATGTAAAAGAAGCCACTG+TGG | + | chr8.3:30332895-30332914 | MS.gene071714:intron | 45.0% | |
| GTAGGCACCTATTGTCTCAT+GGG | + | chr8.3:30332337-30332356 | MS.gene071714:intron | 45.0% | |
| TACCTATTACAAGAGGTGGG+GGG | + | chr8.3:30332031-30332050 | MS.gene071714:CDS | 45.0% | |
| TAGGATGGGATAGGAACATG+TGG | + | chr8.3:30331548-30331567 | MS.gene071714:intron | 45.0% | |
| TCACGAAGCTTGATCAGTGT+TGG | + | chr8.3:30332777-30332796 | MS.gene071714:intron | 45.0% | |
| TCCCCATTTCAATCGCCTTA+TGG | - | chr8.3:30333778-30333797 | None:intergenic | 45.0% | |
| TGCCTACTATCTGTCCTCTA+TGG | - | chr8.3:30332324-30332343 | None:intergenic | 45.0% | |
| TGGGTCAACACTTGATAGGA+AGG | + | chr8.3:30332356-30332375 | MS.gene071714:intron | 45.0% | |
| TTGATAGGAAGGTCTACACG+AGG | + | chr8.3:30332367-30332386 | MS.gene071714:intron | 45.0% | |
| TTGCTAACGAGACTCAGTTG+TGG | - | chr8.3:30333432-30333451 | None:intergenic | 45.0% | |
| TTTGGATGATCCGGCAATGT+GGG | + | chr8.3:30330813-30330832 | MS.gene071714:CDS | 45.0% | |
| ! | AACTTCCGATGGTTTGGATG+AGG | + | chr8.3:30335106-30335125 | MS.gene071714:CDS | 45.0% |
| ! | AGCACATGAATGAAGCGCTT+TGG | + | chr8.3:30332067-30332086 | MS.gene071714:CDS | 45.0% |
| ! | CAGCTGCATACTTTTCCAGA+AGG | + | chr8.3:30333729-30333748 | MS.gene071714:intron | 45.0% |
| ! | CTAGCAACCATTTTCTGCCA+TGG | + | chr8.3:30332604-30332623 | MS.gene071714:intron | 45.0% |
| ! | GCACATGAATGAAGCGCTTT+GGG | + | chr8.3:30332068-30332087 | MS.gene071714:CDS | 45.0% |
| ! | GGAAAAGTATGCAGCTGCAA+TGG | - | chr8.3:30333726-30333745 | None:intergenic | 45.0% |
| ! | GGCGCTTAAATGATGGAGAA+TGG | + | chr8.3:30332089-30332108 | MS.gene071714:intron | 45.0% |
| ! | GTGTTGACCCATGAGACAAT+AGG | - | chr8.3:30332347-30332366 | None:intergenic | 45.0% |
| ! | GTTTTTGCGCTGTCGTATTG+TGG | + | chr8.3:30334843-30334862 | MS.gene071714:intron | 45.0% |
| !! | CTCCTCTATTACGTTTTGGC+AGG | + | chr8.3:30333509-30333528 | MS.gene071714:intron | 45.0% |
| !! | TCGAACCCCAAAGGTATTAG+AGG | - | chr8.3:30333895-30333914 | None:intergenic | 45.0% |
| !! | TCTAATACCTTTGGGGTTCG+AGG | + | chr8.3:30333894-30333913 | MS.gene071714:intron | 45.0% |
| ACCTATTACAAGAGGTGGGG+GGG | + | chr8.3:30332032-30332051 | MS.gene071714:CDS | 50.0% | |
| ATAGGAAGGTCTACACGAGG+CGG | + | chr8.3:30332370-30332389 | MS.gene071714:intron | 50.0% | |
| ATGCTTGTGTGGAGGGAAGA+AGG | - | chr8.3:30332136-30332155 | None:intergenic | 50.0% | |
| ATTCATTCCCTGCTATCGGG+TGG | + | chr8.3:30335078-30335097 | MS.gene071714:CDS | 50.0% | |
| CCCTTAAATCCCCACATTGC+CGG | - | chr8.3:30330826-30330845 | None:intergenic | 50.0% | |
| CCGGCAATGTGGGGATTTAA+GGG | + | chr8.3:30330823-30330842 | MS.gene071714:CDS | 50.0% | |
| GATGTTGGAGGCTGCAATGA+AGG | - | chr8.3:30331172-30331191 | None:intergenic | 50.0% | |
| GCCCAAAACTTCCGATGGTT+TGG | + | chr8.3:30335100-30335119 | MS.gene071714:CDS | 50.0% | |
| GCTGTAACCGTTGGAGATGT+TGG | - | chr8.3:30331187-30331206 | None:intergenic | 50.0% | |
| GGATATTCAGGCCTTCAGTG+CGG | + | chr8.3:30331135-30331154 | MS.gene071714:intron | 50.0% | |
| GTAACCGTTGGAGATGTTGG+AGG | - | chr8.3:30331184-30331203 | None:intergenic | 50.0% | |
| GTGTTCCCACTAAACCACAG+TGG | - | chr8.3:30332912-30332931 | None:intergenic | 50.0% | |
| TAGTCAAATAGCGGCTCCCA+TGG | - | chr8.3:30331072-30331091 | None:intergenic | 50.0% | |
| TCCGGCAATGTGGGGATTTA+AGG | + | chr8.3:30330822-30330841 | MS.gene071714:CDS | 50.0% | |
| TCTAAGAAAGTGGCCGGGAT+GGG | + | chr8.3:30332393-30332412 | MS.gene071714:intron | 50.0% | |
| TGCTGCCTCATCCAAACCAT+CGG | - | chr8.3:30335114-30335133 | None:intergenic | 50.0% | |
| TTGGATGATCCGGCAATGTG+GGG | + | chr8.3:30330814-30330833 | MS.gene071714:CDS | 50.0% | |
| ! | CGCTTTGGGCGCTTAAATGA+TGG | + | chr8.3:30332082-30332101 | MS.gene071714:intron | 50.0% |
| ! | CGTTGTTAGAGCACTCTAGC+AGG | - | chr8.3:30331586-30331605 | None:intergenic | 50.0% |
| ! | GTTAGAGCACTCTAGCAGGA+AGG | - | chr8.3:30331582-30331601 | None:intergenic | 50.0% |
| AGGCAATCCTCGAACCCCAA+AGG | - | chr8.3:30333904-30333923 | None:intergenic | 55.0% | |
| AGGCGGTCTAAGAAAGTGGC+CGG | + | chr8.3:30332387-30332406 | MS.gene071714:intron | 55.0% | |
| CAACCCAAAAGCCGCACTGA+AGG | - | chr8.3:30331149-30331168 | None:intergenic | 55.0% | |
| CACGAGGCGGTCTAAGAAAG+TGG | + | chr8.3:30332383-30332402 | MS.gene071714:intron | 55.0% | |
| CCTATTACAAGAGGTGGGGG+GGG | + | chr8.3:30332033-30332052 | MS.gene071714:CDS | 55.0% | |
| CTATTACAAGAGGTGGGGGG+GGG | + | chr8.3:30332034-30332053 | MS.gene071714:CDS | 55.0% | |
| CTTCAGCAGCAAGACCCATC+TGG | - | chr8.3:30330874-30330893 | None:intergenic | 55.0% | |
| GCAGCCTCCAACATCTCCAA+CGG | + | chr8.3:30331177-30331196 | MS.gene071714:intron | 55.0% | |
| GTCTAAGAAAGTGGCCGGGA+TGG | + | chr8.3:30332392-30332411 | MS.gene071714:intron | 55.0% | |
| TATAGCGCCGCTGTAACCGT+TGG | - | chr8.3:30331196-30331215 | None:intergenic | 55.0% | |
| ! | AGGCCTTCAGTGCGGCTTTT+GGG | + | chr8.3:30331143-30331162 | MS.gene071714:intron | 55.0% |
| ! | TTTTGGGCCACCCGATAGCA+GGG | - | chr8.3:30335088-30335107 | None:intergenic | 55.0% |
| CCCCCCCCACCTCTTGTAAT+AGG | - | chr8.3:30332036-30332055 | None:intergenic | 60.0% | |
| GACTCTCACTAGGCCCATCC+CGG | - | chr8.3:30332409-30332428 | None:intergenic | 60.0% | |
| GGCGGTCTAAGAAAGTGGCC+GGG | + | chr8.3:30332388-30332407 | MS.gene071714:intron | 60.0% | |
| GGGTGGCCCAAAACTTCCGA+TGG | + | chr8.3:30335095-30335114 | MS.gene071714:CDS | 60.0% | |
| ! | CAGGCCTTCAGTGCGGCTTT+TGG | + | chr8.3:30331142-30331161 | MS.gene071714:intron | 60.0% |
| !! | GTTTTGGGCCACCCGATAGC+AGG | - | chr8.3:30335089-30335108 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 30330813 | 30335190 | 30330813 | ID=MS.gene071714 |
| chr8.3 | mRNA | 30330813 | 30335190 | 30330813 | ID=MS.gene071714.t1;Parent=MS.gene071714 |
| chr8.3 | exon | 30330813 | 30330844 | 30330813 | ID=MS.gene071714.t1.exon1;Parent=MS.gene071714.t1 |
| chr8.3 | CDS | 30330813 | 30330844 | 30330813 | ID=cds.MS.gene071714.t1;Parent=MS.gene071714.t1 |
| chr8.3 | exon | 30330894 | 30330938 | 30330894 | ID=MS.gene071714.t1.exon2;Parent=MS.gene071714.t1 |
| chr8.3 | CDS | 30330894 | 30330938 | 30330894 | ID=cds.MS.gene071714.t1;Parent=MS.gene071714.t1 |
| chr8.3 | exon | 30332022 | 30332089 | 30332022 | ID=MS.gene071714.t1.exon3;Parent=MS.gene071714.t1 |
| chr8.3 | CDS | 30332022 | 30332089 | 30332022 | ID=cds.MS.gene071714.t1;Parent=MS.gene071714.t1 |
| chr8.3 | exon | 30333732 | 30333869 | 30333732 | ID=MS.gene071714.t1.exon4;Parent=MS.gene071714.t1 |
| chr8.3 | CDS | 30333732 | 30333869 | 30333732 | ID=cds.MS.gene071714.t1;Parent=MS.gene071714.t1 |
| chr8.3 | exon | 30334939 | 30335190 | 30334939 | ID=MS.gene071714.t1.exon5;Parent=MS.gene071714.t1 |
| chr8.3 | CDS | 30334939 | 30335190 | 30334939 | ID=cds.MS.gene071714.t1;Parent=MS.gene071714.t1 |
| Gene Sequence |
| Protein sequence |
