Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056583.t1 | XP_003629034.1 | 97.6 | 170 | 4 | 0 | 5 | 174 | 113 | 282 | 8.10E-95 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056583.t1 | Q9ZV87 | 65.3 | 170 | 54 | 3 | 5 | 169 | 113 | 282 | 4.7e-59 | 228.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056583.t1 | G7L7V8 | 97.6 | 170 | 4 | 0 | 5 | 174 | 113 | 282 | 5.8e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene056583 | -0.803809 | 2.92E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene056583 | -0.822464 | 2.34E-53 | -1.69E-46 |
| MS.gene053108 | MS.gene056583 | 0.814893 | 1.22E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene056583 | -0.820045 | 8.44E-53 | -1.69E-46 |
| MS.gene056583 | MS.gene056618 | 0.859247 | 4.72E-63 | -1.69E-46 |
| MS.gene056583 | MS.gene063062 | 0.816849 | 4.47E-52 | -1.69E-46 |
| MS.gene056583 | MS.gene066030 | -0.819634 | 1.05E-52 | -1.69E-46 |
| MS.gene056583 | MS.gene066054 | -0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene056583 | MS.gene067960 | 0.894546 | 2.23E-75 | -1.69E-46 |
| MS.gene056583 | MS.gene071308 | -0.803914 | 2.78E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene071422 | 0.820755 | 5.80E-53 | -1.69E-46 |
| MS.gene056583 | MS.gene071713 | 0.929428 | 7.05E-93 | -1.69E-46 |
| MS.gene056583 | MS.gene071714 | 0.804958 | 1.68E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene072496 | -0.824634 | 7.26E-54 | -1.69E-46 |
| MS.gene056583 | MS.gene07302 | -0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene056583 | MS.gene073059 | 0.800696 | 1.28E-48 | -1.69E-46 |
| MS.gene056583 | MS.gene073062 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene056583 | MS.gene074380 | -0.820814 | 5.62E-53 | -1.69E-46 |
| MS.gene056583 | MS.gene09022 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene056583 | MS.gene09795 | -0.804044 | 2.61E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene09797 | -0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene20813 | -0.81752 | 3.16E-52 | -1.69E-46 |
| MS.gene056583 | MS.gene20816 | -0.811072 | 8.41E-51 | -1.69E-46 |
| MS.gene056583 | MS.gene23115 | -0.825958 | 3.53E-54 | -1.69E-46 |
| MS.gene056583 | MS.gene25726 | 0.843371 | 1.46E-58 | -1.69E-46 |
| MS.gene056583 | MS.gene28334 | -0.835771 | 1.38E-56 | -1.69E-46 |
| MS.gene056583 | MS.gene29927 | -0.800405 | 1.46E-48 | -1.69E-46 |
| MS.gene056583 | MS.gene30456 | 0.819517 | 1.11E-52 | -1.69E-46 |
| MS.gene056583 | MS.gene32677 | -0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene056583 | MS.gene35442 | 0.804777 | 1.84E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene40630 | 0.85076 | 1.38E-60 | -1.69E-46 |
| MS.gene056583 | MS.gene40688 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene42376 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene44073 | 0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene45445 | 0.852478 | 4.50E-61 | -1.69E-46 |
| MS.gene056583 | MS.gene46880 | -0.823656 | 1.23E-53 | -1.69E-46 |
| MS.gene056583 | MS.gene47989 | -0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene52976 | -0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene54068 | -0.832014 | 1.20E-55 | -1.69E-46 |
| MS.gene056583 | MS.gene58165 | -0.801328 | 9.48E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene60712 | -0.809535 | 1.80E-50 | -1.69E-46 |
| MS.gene056583 | MS.gene60979 | 0.80351 | 3.37E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene62884 | 0.802446 | 5.59E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene65986 | 0.811921 | 5.50E-51 | -1.69E-46 |
| MS.gene056583 | MS.gene69607 | 0.836905 | 7.11E-57 | -1.69E-46 |
| MS.gene056583 | MS.gene70017 | 0.953228 | 4.35E-111 | -1.69E-46 |
| MS.gene056583 | MS.gene70491 | 0.830592 | 2.69E-55 | -1.69E-46 |
| MS.gene056583 | MS.gene71182 | 0.835274 | 1.85E-56 | -1.69E-46 |
| MS.gene056583 | MS.gene71420 | -0.816873 | 4.42E-52 | -1.69E-46 |
| MS.gene056583 | MS.gene73893 | 0.837499 | 5.01E-57 | -1.69E-46 |
| MS.gene056583 | MS.gene75918 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene056583 | MS.gene78574 | -0.817753 | 2.80E-52 | -1.69E-46 |
| MS.gene056583 | MS.gene82422 | 0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene82768 | 0.813887 | 2.04E-51 | -1.69E-46 |
| MS.gene056583 | MS.gene83388 | 0.956051 | 7.32E-114 | -1.69E-46 |
| MS.gene056583 | MS.gene86293 | -0.822453 | 2.35E-53 | -1.69E-46 |
| MS.gene056583 | MS.gene91527 | 0.822128 | 2.79E-53 | -1.69E-46 |
| MS.gene056583 | MS.gene93165 | -0.80213 | 6.49E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene97986 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene99003 | 0.809292 | 2.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056583.t1 | MTR_8g072400 | 97.647 | 170 | 4 | 0 | 5 | 174 | 113 | 282 | 1.26e-124 | 352 |
| MS.gene056583.t1 | MTR_7g112680 | 41.121 | 107 | 56 | 3 | 7 | 112 | 193 | 293 | 1.37e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056583.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 38 | 209 | 2.26e-75 | 224 |
| MS.gene056583.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 38 | 209 | 2.26e-75 | 224 |
| MS.gene056583.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 113 | 284 | 7.64e-75 | 226 |
| MS.gene056583.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 113 | 284 | 7.64e-75 | 226 |
| MS.gene056583.t1 | AT1G78690 | 84.416 | 77 | 12 | 0 | 5 | 81 | 113 | 189 | 2.55e-43 | 143 |
| MS.gene056583.t1 | AT3G05510 | 37.795 | 127 | 72 | 2 | 7 | 132 | 100 | 220 | 1.01e-20 | 87.8 |
| MS.gene056583.t1 | AT3G05510 | 37.795 | 127 | 72 | 2 | 7 | 132 | 190 | 310 | 1.76e-20 | 87.8 |
Find 48 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGATTAACATAATTAT+TGG | 0.205505 | 8.3:-30270978 | MS.gene056583:CDS |
| ATCCAAACCATCGGAAGTTT+TGG | 0.236147 | 8.3:+30270869 | None:intergenic |
| TCCCCATTTCAATCGCCTTA+TGG | 0.245711 | 8.3:+30272187 | None:intergenic |
| CCCCATTTCAATCGCCTTAT+GGG | 0.322930 | 8.3:+30272188 | None:intergenic |
| GTGTTGCCATGGAGAAATTA+AGG | 0.335963 | 8.3:-30270800 | MS.gene056583:CDS |
| TTAATCTTCTTATTGCATAA+TGG | 0.350456 | 8.3:+30270990 | None:intergenic |
| GCCCAAAACTTCCGATGGTT+TGG | 0.352965 | 8.3:-30270871 | MS.gene056583:CDS |
| GGCAATACAATCGGAGTTAT+AGG | 0.380006 | 8.3:+30272140 | None:intergenic |
| GCTGGAAGGTCAAATTCAAT+TGG | 0.397107 | 8.3:+30270951 | None:intergenic |
| CACCCATAAGGCGATTGAAA+TGG | 0.400448 | 8.3:-30272190 | MS.gene056583:CDS |
| ATGGAGAAATTAAGGTGTTA+TGG | 0.405553 | 8.3:-30270792 | MS.gene056583:CDS |
| TGAAAACCATGATGAACAAT+TGG | 0.407703 | 8.3:+30272119 | None:intergenic |
| ACCCATAAGGCGATTGAAAT+GGG | 0.410412 | 8.3:-30272189 | MS.gene056583:CDS |
| ATAGCCATTTCACTCATTGC+TGG | 0.413100 | 8.3:+30270933 | None:intergenic |
| TCTAAAATGGTAACATTCAC+AGG | 0.423087 | 8.3:-30273965 | None:intergenic |
| GGAATGAATCATTCCGAGAC+TGG | 0.443898 | 8.3:+30270907 | None:intergenic |
| CTACCAAACATATATTTCTC+TGG | 0.451010 | 8.3:+30271026 | None:intergenic |
| AATGATTCATTCCCTGCTAT+CGG | 0.460627 | 8.3:-30270897 | MS.gene056583:CDS |
| CCTTCCAGCAATGAGTGAAA+TGG | 0.466140 | 8.3:-30270937 | MS.gene056583:CDS |
| GGCGCTTAAATGATGGAGAA+TGG | 0.466287 | 8.3:-30273880 | MS.gene056583:CDS |
| ATGCCAGAGAAATATATGTT+TGG | 0.471220 | 8.3:-30271029 | MS.gene056583:CDS |
| TTCTTATTGCATAATGGTAA+AGG | 0.476447 | 8.3:+30270996 | None:intergenic |
| TGCATACCTATTACAAGAGG+TGG | 0.488641 | 8.3:-30273938 | MS.gene056583:CDS |
| GTATTGCCAATTGTTCATCA+TGG | 0.490395 | 8.3:-30272125 | MS.gene056583:CDS |
| AGCACATGAATGAAGCGCTT+GGG | 0.493733 | 8.3:-30273901 | MS.gene056583:CDS |
| GAGCACATGAATGAAGCGCT+TGG | 0.502704 | 8.3:-30273902 | MS.gene056583:CDS |
| ATGATTCATTCCCTGCTATC+GGG | 0.503118 | 8.3:-30270896 | MS.gene056583:CDS |
| TGAACAATTGGCAATACAAT+CGG | 0.512162 | 8.3:+30272131 | None:intergenic |
| GCGCTTGGGCGCTTAAATGA+TGG | 0.515254 | 8.3:-30273887 | MS.gene056583:CDS |
| ATCAAGACGATGCACCCATA+AGG | 0.516940 | 8.3:-30272202 | MS.gene056583:CDS |
| AGAGAAAATTCGTGTTGCCA+TGG | 0.524956 | 8.3:-30270811 | MS.gene056583:CDS |
| AACTTCCGATGGTTTGGATG+AGG | 0.529543 | 8.3:-30270865 | MS.gene056583:CDS |
| GCGCTTAAATGATGGAGAAT+GGG | 0.543995 | 8.3:-30273879 | MS.gene056583:intron |
| TGCTGCCTCATCCAAACCAT+CGG | 0.562631 | 8.3:+30270860 | None:intergenic |
| GCATACCTATTACAAGAGGT+GGG | 0.571063 | 8.3:-30273937 | MS.gene056583:CDS |
| AAATGGCTATTGCCCAGTCT+CGG | 0.571200 | 8.3:-30270920 | MS.gene056583:CDS |
| ATAACACCTTAATTTCTCCA+TGG | 0.579558 | 8.3:+30270794 | None:intergenic |
| CCATTTCACTCATTGCTGGA+AGG | 0.590388 | 8.3:+30270937 | None:intergenic |
| ATACCTATTACAAGAGGTGG+GGG | 0.590840 | 8.3:-30273935 | MS.gene056583:CDS |
| GAATGAATCATTCCGAGACT+GGG | 0.595529 | 8.3:+30270908 | None:intergenic |
| GGGTGGCCCAAAACTTCCGA+TGG | 0.612018 | 8.3:-30270876 | MS.gene056583:CDS |
| CATACCTATTACAAGAGGTG+GGG | 0.616369 | 8.3:-30273936 | MS.gene056583:CDS |
| TTATTGCATAATGGTAAAGG+AGG | 0.636529 | 8.3:+30270999 | None:intergenic |
| ATTCATTCCCTGCTATCGGG+TGG | 0.650574 | 8.3:-30270893 | MS.gene056583:CDS |
| CCCATAAGGCGATTGAAATG+GGG | 0.650823 | 8.3:-30272188 | MS.gene056583:CDS |
| CAATCGGAGTTATAGGTGCA+CGG | 0.652808 | 8.3:+30272147 | None:intergenic |
| AAATGCATACCTATTACAAG+AGG | 0.660468 | 8.3:-30273941 | MS.gene056583:CDS |
| TACCTATTACAAGAGGTGGG+GGG | 0.737152 | 8.3:-30273934 | MS.gene056583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGATTAACATAATTAT+TGG | - | chr8.3:30273751-30273770 | MS.gene056583:intron | 15.0% |
| !! | ACAGTCAAATAAAAAAAAAT+AGG | + | chr8.3:30272068-30272087 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTCACAAATAAT+AGG | + | chr8.3:30271739-30271758 | None:intergenic | 15.0% |
| !!! | ATTTTAATAAACTTACATTC+TGG | - | chr8.3:30271769-30271788 | MS.gene056583:intron | 15.0% |
| !! | AGAACAAAAGCTATAAAAAT+TGG | - | chr8.3:30272126-30272145 | MS.gene056583:CDS | 20.0% |
| !! | AGAACATAATACAAGAAATA+TGG | + | chr8.3:30273476-30273495 | None:intergenic | 20.0% |
| !! | AGAATTCTCAAAGAAAAAAT+TGG | + | chr8.3:30271326-30271345 | None:intergenic | 20.0% |
| !! | AGATTGTTTACCAAATAAAA+AGG | + | chr8.3:30271571-30271590 | None:intergenic | 20.0% |
| !! | ATAATGAGAATGAATATTCA+GGG | - | chr8.3:30271222-30271241 | MS.gene056583:intron | 20.0% |
| !! | ATTAAGCGATAAAAAAAATC+TGG | + | chr8.3:30271867-30271886 | None:intergenic | 20.0% |
| !! | TAATAACCAATAAAACAGAA+GGG | + | chr8.3:30272038-30272057 | None:intergenic | 20.0% |
| !! | TATAAATTTGTCGTAACAAA+AGG | - | chr8.3:30273065-30273084 | MS.gene056583:intron | 20.0% |
| !! | TATAATGAGAATGAATATTC+AGG | - | chr8.3:30271221-30271240 | MS.gene056583:intron | 20.0% |
| !! | TATTATCTTAATCTTCTGAT+TGG | + | chr8.3:30273206-30273225 | None:intergenic | 20.0% |
| !! | TTAATCTTCTTATTGCATAA+TGG | + | chr8.3:30273742-30273761 | None:intergenic | 20.0% |
| !!! | ATTTTGCATCATGAATTTAT+AGG | + | chr8.3:30272850-30272869 | None:intergenic | 20.0% |
| !!! | TTTCCTTGCTTTTTATATTT+GGG | - | chr8.3:30272229-30272248 | MS.gene056583:CDS | 20.0% |
| ! | AACAAGAATCATAAGAGTAA+TGG | + | chr8.3:30273519-30273538 | None:intergenic | 25.0% |
| ! | AAGCATTAAGAAAAAGATCA+TGG | + | chr8.3:30273018-30273037 | None:intergenic | 25.0% |
| ! | ATATATCTTAAGCATACGAT+TGG | - | chr8.3:30273315-30273334 | MS.gene056583:intron | 25.0% |
| ! | CCAAATAATTAGAAAATGAC+AGG | + | chr8.3:30272962-30272981 | None:intergenic | 25.0% |
| ! | CTAATAACCAATAAAACAGA+AGG | + | chr8.3:30272039-30272058 | None:intergenic | 25.0% |
| ! | TAATGAGAATGAATATTCAG+GGG | - | chr8.3:30271223-30271242 | MS.gene056583:intron | 25.0% |
| ! | TGTGATTCATATTTAGAAAC+TGG | - | chr8.3:30273423-30273442 | MS.gene056583:intron | 25.0% |
| ! | TTCTTATTGCATAATGGTAA+AGG | + | chr8.3:30273736-30273755 | None:intergenic | 25.0% |
| !! | AATAGAAGTATAGGATAAAC+AGG | - | chr8.3:30271997-30272016 | MS.gene056583:intron | 25.0% |
| !! | AATTTCTGCTTATGTTTTCT+AGG | - | chr8.3:30273675-30273694 | MS.gene056583:intron | 25.0% |
| !! | ACTCTTTTACGATGATAATT+TGG | - | chr8.3:30270917-30270936 | MS.gene056583:CDS | 25.0% |
| !! | ATTCTCATTATAACACCTTT+TGG | + | chr8.3:30271213-30271232 | None:intergenic | 25.0% |
| !! | CTCTTTTACGATGATAATTT+GGG | - | chr8.3:30270918-30270937 | MS.gene056583:CDS | 25.0% |
| !! | GAATTTAGTTGTTAGACTTT+TGG | - | chr8.3:30272759-30272778 | MS.gene056583:intron | 25.0% |
| !!! | AACTTTGTATCTTTTAGTTC+TGG | + | chr8.3:30272352-30272371 | None:intergenic | 25.0% |
| !!! | ATTGTCTACTCTGAAATATT+GGG | - | chr8.3:30271951-30271970 | MS.gene056583:intron | 25.0% |
| !!! | CCTGTCATTTTCTAATTATT+TGG | - | chr8.3:30272959-30272978 | MS.gene056583:intron | 25.0% |
| !!! | CTTTCCTTGCTTTTTATATT+TGG | - | chr8.3:30272228-30272247 | MS.gene056583:CDS | 25.0% |
| !!! | TATTGTCTACTCTGAAATAT+TGG | - | chr8.3:30271950-30271969 | MS.gene056583:intron | 25.0% |
| !!! | TCTTGTTTTTGATGCATTTA+TGG | - | chr8.3:30271423-30271442 | MS.gene056583:intron | 25.0% |
| !!! | TGTTGGTTTTCCTTTTTATT+TGG | - | chr8.3:30271558-30271577 | MS.gene056583:intron | 25.0% |
| AAAAAAATCTGGTGAAGTTG+AGG | + | chr8.3:30271856-30271875 | None:intergenic | 30.0% | |
| AAATGACAGGACATATATCA+AGG | + | chr8.3:30272949-30272968 | None:intergenic | 30.0% | |
| AAATGCATACCTATTACAAG+AGG | - | chr8.3:30270788-30270807 | MS.gene056583:CDS | 30.0% | |
| ATAACACCTTAATTTCTCCA+TGG | + | chr8.3:30273938-30273957 | None:intergenic | 30.0% | |
| ATGAGATACTTGCATAGTAA+CGG | + | chr8.3:30273565-30273584 | None:intergenic | 30.0% | |
| ATGCCAGAGAAATATATGTT+TGG | - | chr8.3:30273700-30273719 | MS.gene056583:intron | 30.0% | |
| CAGAGAAAAAAAGTCTAGTA+CGG | + | chr8.3:30273371-30273390 | None:intergenic | 30.0% | |
| CTACCAAACATATATTTCTC+TGG | + | chr8.3:30273706-30273725 | None:intergenic | 30.0% | |
| CTACTTGTGAGAATTATTGA+AGG | - | chr8.3:30273142-30273161 | MS.gene056583:intron | 30.0% | |
| CTTTCGTAAAGAGAAAATTG+TGG | - | chr8.3:30271641-30271660 | MS.gene056583:intron | 30.0% | |
| TATAGGATAAACAGGTTTGT+GGG | - | chr8.3:30272005-30272024 | MS.gene056583:intron | 30.0% | |
| TGAAAACCATGATGAACAAT+TGG | + | chr8.3:30272613-30272632 | None:intergenic | 30.0% | |
| TGAACAATTGGCAATACAAT+CGG | + | chr8.3:30272601-30272620 | None:intergenic | 30.0% | |
| TTATTGCATAATGGTAAAGG+AGG | + | chr8.3:30273733-30273752 | None:intergenic | 30.0% | |
| ! | ATCAGCAGTATTTTCTTACA+AGG | - | chr8.3:30272806-30272825 | MS.gene056583:intron | 30.0% |
| ! | ATGGAGAAATTAAGGTGTTA+TGG | - | chr8.3:30273937-30273956 | MS.gene056583:CDS | 30.0% |
| ! | CAAGCAGTTAATAGAAGTAT+AGG | - | chr8.3:30271988-30272007 | MS.gene056583:intron | 30.0% |
| !! | ATAAGATTGCGTTGATTTCA+TGG | - | chr8.3:30272149-30272168 | MS.gene056583:CDS | 30.0% |
| !! | TAAGATTGCGTTGATTTCAT+GGG | - | chr8.3:30272150-30272169 | MS.gene056583:CDS | 30.0% |
| !! | TAATTTCGTTATGCTGATTC+TGG | - | chr8.3:30273641-30273660 | MS.gene056583:intron | 30.0% |
| !! | TTTTCTCGGTTGATGTTAAA+TGG | - | chr8.3:30271007-30271026 | MS.gene056583:CDS | 30.0% |
| !!! | AGTTGTTAGACTTTTGGAAT+TGG | - | chr8.3:30272765-30272784 | MS.gene056583:intron | 30.0% |
| !!! | GTTTTATTTGCATGACCATT+GGG | - | chr8.3:30272086-30272105 | MS.gene056583:intron | 30.0% |
| !!! | TGTTTTATTTGCATGACCAT+TGG | - | chr8.3:30272085-30272104 | MS.gene056583:intron | 30.0% |
| !!! | TTATTGTCCTTGCTTTTTCT+CGG | - | chr8.3:30270993-30271012 | MS.gene056583:CDS | 30.0% |
| AAAACTCTTAGCGATACTAG+AGG | + | chr8.3:30270974-30270993 | None:intergenic | 35.0% | |
| AAACTCTTAGCGATACTAGA+GGG | + | chr8.3:30270973-30270992 | None:intergenic | 35.0% | |
| AAATGGAAAGTTCTCTGAAC+TGG | - | chr8.3:30272428-30272447 | MS.gene056583:intron | 35.0% | |
| AATGATTCATTCCCTGCTAT+CGG | - | chr8.3:30273832-30273851 | MS.gene056583:intron | 35.0% | |
| ACTCAATTGTGGAAAGTTGA+TGG | + | chr8.3:30272188-30272207 | None:intergenic | 35.0% | |
| AGAATATGAGATGATCCTAG+AGG | - | chr8.3:30271067-30271086 | MS.gene056583:intron | 35.0% | |
| AGTGCTGCAAATGGTATATA+AGG | + | chr8.3:30272691-30272710 | None:intergenic | 35.0% | |
| AGTTCAGAGAACTTTCCATT+TGG | + | chr8.3:30272429-30272448 | None:intergenic | 35.0% | |
| ATACTTGCATAGTAACGGTT+AGG | + | chr8.3:30273560-30273579 | None:intergenic | 35.0% | |
| ATCAATTGTCAAACACCCAA+TGG | + | chr8.3:30272104-30272123 | None:intergenic | 35.0% | |
| CATTAAGACAATTGCAGATC+CGG | + | chr8.3:30273399-30273418 | None:intergenic | 35.0% | |
| CTCTTTCCTCTAATACCTTT+GGG | - | chr8.3:30272653-30272672 | MS.gene056583:intron | 35.0% | |
| GATTTCATGGGTAAATTCAG+AGG | - | chr8.3:30272162-30272181 | MS.gene056583:CDS | 35.0% | |
| GCTGCTTATCTTGAAAATGT+GGG | - | chr8.3:30271791-30271810 | MS.gene056583:intron | 35.0% | |
| GTAAAAGAGTTATGCTTGTG+TGG | + | chr8.3:30270907-30270926 | None:intergenic | 35.0% | |
| GTATAGGATAAACAGGTTTG+TGG | - | chr8.3:30272004-30272023 | MS.gene056583:intron | 35.0% | |
| GTATTGCCAATTGTTCATCA+TGG | - | chr8.3:30272604-30272623 | MS.gene056583:intron | 35.0% | |
| GTGCCCAAATATAAAAAGCA+AGG | + | chr8.3:30272235-30272254 | None:intergenic | 35.0% | |
| GTTCAGAGAACTTTCCATTT+GGG | + | chr8.3:30272428-30272447 | None:intergenic | 35.0% | |
| TAATGCTTGCTTTCTTCTCA+AGG | - | chr8.3:30273030-30273049 | MS.gene056583:intron | 35.0% | |
| TAGTAATGAGCATGTATCGA+TGG | - | chr8.3:30272883-30272902 | MS.gene056583:intron | 35.0% | |
| TCTTTCCTCTAATACCTTTG+GGG | - | chr8.3:30272654-30272673 | MS.gene056583:intron | 35.0% | |
| TGCAAGAGATTAGAGATCAA+AGG | - | chr8.3:30273115-30273134 | MS.gene056583:intron | 35.0% | |
| TTCAGAGAACTTTCCATTTG+GGG | + | chr8.3:30272427-30272446 | None:intergenic | 35.0% | |
| TTGTTATCCATGGCAGAAAA+TGG | + | chr8.3:30271375-30271394 | None:intergenic | 35.0% | |
| ! | AATCTTTCTTGTGTGTCACT+GGG | - | chr8.3:30271586-30271605 | MS.gene056583:intron | 35.0% |
| ! | CTGATTGGTCATTGTTCAAT+GGG | + | chr8.3:30273191-30273210 | None:intergenic | 35.0% |
| ! | GATGCATTTATGGACTGAAT+TGG | - | chr8.3:30271433-30271452 | MS.gene056583:intron | 35.0% |
| ! | GTATGTCCCTTCTGTTTTAT+TGG | - | chr8.3:30272029-30272048 | MS.gene056583:intron | 35.0% |
| ! | TATTTGGGCACACTATTTTC+TGG | - | chr8.3:30272244-30272263 | MS.gene056583:intron | 35.0% |
| ! | TCTAGGATCATCTCATATTC+TGG | + | chr8.3:30271068-30271087 | None:intergenic | 35.0% |
| ! | TCTGATTGGTCATTGTTCAA+TGG | + | chr8.3:30273192-30273211 | None:intergenic | 35.0% |
| ! | TCTTGATGAACTTTTCCTTC+TGG | + | chr8.3:30272514-30272533 | None:intergenic | 35.0% |
| ! | TGTACTCCTCTATTACGTTT+TGG | - | chr8.3:30272272-30272291 | MS.gene056583:intron | 35.0% |
| ! | TGTTCATCATGGTTTTCATG+AGG | - | chr8.3:30272615-30272634 | MS.gene056583:intron | 35.0% |
| ! | TTGAGCTTGATTTGACTAAG+AGG | + | chr8.3:30271707-30271726 | None:intergenic | 35.0% |
| !! | AATCACTCGTAGCTTTGATT+TGG | + | chr8.3:30271288-30271307 | None:intergenic | 35.0% |
| !! | ACTCTGAAATATTGGGTGAT+TGG | - | chr8.3:30271958-30271977 | MS.gene056583:intron | 35.0% |
| !! | CAGTTAAAGCTTGTTATCCA+TGG | + | chr8.3:30271385-30271404 | None:intergenic | 35.0% |
| !! | TCAATTAGAAGTGCTGCAAA+TGG | + | chr8.3:30272700-30272719 | None:intergenic | 35.0% |
| !!! | ACTTTTTTTCTCTGCATGAC+CGG | - | chr8.3:30273377-30273396 | MS.gene056583:intron | 35.0% |
| AAAGAGTTATGCTTGTGTGG+AGG | + | chr8.3:30270904-30270923 | None:intergenic | 40.0% | |
| AAGAGTTATGCTTGTGTGGA+GGG | + | chr8.3:30270903-30270922 | None:intergenic | 40.0% | |
| ACATCAACCGAGAAAAAGCA+AGG | + | chr8.3:30271003-30271022 | None:intergenic | 40.0% | |
| ACCCATAAGGCGATTGAAAT+GGG | - | chr8.3:30272540-30272559 | MS.gene056583:intron | 40.0% | |
| AGAGAAAATTCGTGTTGCCA+TGG | - | chr8.3:30273918-30273937 | MS.gene056583:CDS | 40.0% | |
| ATACCTATTACAAGAGGTGG+GGG | - | chr8.3:30270794-30270813 | MS.gene056583:CDS | 40.0% | |
| ATAGCCATTTCACTCATTGC+TGG | + | chr8.3:30273799-30273818 | None:intergenic | 40.0% | |
| ATCTCCATAGAAGTTGCACA+CGG | + | chr8.3:30272309-30272328 | None:intergenic | 40.0% | |
| ATGATTCATTCCCTGCTATC+GGG | - | chr8.3:30273833-30273852 | MS.gene056583:intron | 40.0% | |
| CAATCTTTCTTGTGTGTCAC+TGG | - | chr8.3:30271585-30271604 | MS.gene056583:intron | 40.0% | |
| CATACCTATTACAAGAGGTG+GGG | - | chr8.3:30270793-30270812 | MS.gene056583:CDS | 40.0% | |
| CCTCTTTCCTCTAATACCTT+TGG | - | chr8.3:30272652-30272671 | MS.gene056583:intron | 40.0% | |
| CTTACTCTGTAGCATCCAAA+AGG | - | chr8.3:30271195-30271214 | MS.gene056583:intron | 40.0% | |
| GAATGAATCATTCCGAGACT+GGG | + | chr8.3:30273824-30273843 | None:intergenic | 40.0% | |
| GCATACCTATTACAAGAGGT+GGG | - | chr8.3:30270792-30270811 | MS.gene056583:CDS | 40.0% | |
| GCTGGAAGGTCAAATTCAAT+TGG | + | chr8.3:30273781-30273800 | None:intergenic | 40.0% | |
| GGCAATACAATCGGAGTTAT+AGG | + | chr8.3:30272592-30272611 | None:intergenic | 40.0% | |
| GGCTGCTTATCTTGAAAATG+TGG | - | chr8.3:30271790-30271809 | MS.gene056583:intron | 40.0% | |
| GTAAGTAACAGACTCTCACT+AGG | + | chr8.3:30271180-30271199 | None:intergenic | 40.0% | |
| GTGTTGCCATGGAGAAATTA+AGG | - | chr8.3:30273929-30273948 | MS.gene056583:CDS | 40.0% | |
| TGAGAATGAATATTCAGGGG+AGG | - | chr8.3:30271226-30271245 | MS.gene056583:intron | 40.0% | |
| TGCATACCTATTACAAGAGG+TGG | - | chr8.3:30270791-30270810 | MS.gene056583:CDS | 40.0% | |
| TTGCTAACGAGACTCAATTG+TGG | + | chr8.3:30272199-30272218 | None:intergenic | 40.0% | |
| ! | ATCCAAACCATCGGAAGTTT+TGG | + | chr8.3:30273863-30273882 | None:intergenic | 40.0% |
| ! | GCGCTTAAATGATGGAGAAT+GGG | - | chr8.3:30270850-30270869 | MS.gene056583:CDS | 40.0% |
| ! | TCCAAACCATCGGAAGTTTT+GGG | + | chr8.3:30273862-30273881 | None:intergenic | 40.0% |
| ! | TGGTTGCTAGAGCTTTGATT+TGG | + | chr8.3:30271355-30271374 | None:intergenic | 40.0% |
| !! | CCAAAGGTATTAGAGGAAAG+AGG | + | chr8.3:30272655-30272674 | None:intergenic | 40.0% |
| !! | TCCTCTATTACGTTTTGGCA+GGG | - | chr8.3:30272277-30272296 | MS.gene056583:intron | 40.0% |
| !! | TTGCATTTTAGTGCCCCAAA+TGG | - | chr8.3:30272411-30272430 | MS.gene056583:intron | 40.0% |
| AAATGGCTATTGCCCAGTCT+CGG | - | chr8.3:30273809-30273828 | MS.gene056583:intron | 45.0% | |
| AAGAAGCCACTGTGGTTTAG+TGG | - | chr8.3:30271670-30271689 | MS.gene056583:intron | 45.0% | |
| ACCCTGCCAAAACGTAATAG+AGG | + | chr8.3:30272281-30272300 | None:intergenic | 45.0% | |
| ACTACGAGCACAGTGCTTAT+TGG | + | chr8.3:30273345-30273364 | None:intergenic | 45.0% | |
| AGAAGCCACTGTGGTTTAGT+GGG | - | chr8.3:30271671-30271690 | MS.gene056583:intron | 45.0% | |
| AGTAGGCACCTATTGTCTCA+TGG | - | chr8.3:30271096-30271115 | MS.gene056583:intron | 45.0% | |
| ATCAAGACGATGCACCCATA+AGG | - | chr8.3:30272527-30272546 | MS.gene056583:intron | 45.0% | |
| ATCTCCGTGTGCAACTTCTA+TGG | - | chr8.3:30272302-30272321 | MS.gene056583:intron | 45.0% | |
| CAATCGGAGTTATAGGTGCA+CGG | + | chr8.3:30272585-30272604 | None:intergenic | 45.0% | |
| CACCCATAAGGCGATTGAAA+TGG | - | chr8.3:30272539-30272558 | MS.gene056583:intron | 45.0% | |
| CCATTTCACTCATTGCTGGA+AGG | + | chr8.3:30273795-30273814 | None:intergenic | 45.0% | |
| CCCATAAGGCGATTGAAATG+GGG | - | chr8.3:30272541-30272560 | MS.gene056583:intron | 45.0% | |
| CCCCATTTCAATCGCCTTAT+GGG | + | chr8.3:30272544-30272563 | None:intergenic | 45.0% | |
| CCTTCCAGCAATGAGTGAAA+TGG | - | chr8.3:30273792-30273811 | MS.gene056583:intron | 45.0% | |
| CTCATGGGTCAACACTTGAT+AGG | - | chr8.3:30271112-30271131 | MS.gene056583:intron | 45.0% | |
| GAAGAGTAGCGATGCAAAGA+AGG | - | chr8.3:30271457-30271476 | MS.gene056583:intron | 45.0% | |
| GATCCTAGAGGACAGATAGT+AGG | - | chr8.3:30271079-30271098 | MS.gene056583:intron | 45.0% | |
| GGAATGAATCATTCCGAGAC+TGG | + | chr8.3:30273825-30273844 | None:intergenic | 45.0% | |
| GGATGTAAAAGAAGCCACTG+TGG | - | chr8.3:30271662-30271681 | MS.gene056583:intron | 45.0% | |
| GGGTCAACACTTGATAGGAA+AGG | - | chr8.3:30271117-30271136 | MS.gene056583:intron | 45.0% | |
| GTAGGCACCTATTGTCTCAT+GGG | - | chr8.3:30271097-30271116 | MS.gene056583:intron | 45.0% | |
| TACCTATTACAAGAGGTGGG+GGG | - | chr8.3:30270795-30270814 | MS.gene056583:CDS | 45.0% | |
| TCCCCATTTCAATCGCCTTA+TGG | + | chr8.3:30272545-30272564 | None:intergenic | 45.0% | |
| TCTAAGAAAGTGGCCAGGAT+GGG | - | chr8.3:30271154-30271173 | MS.gene056583:intron | 45.0% | |
| TGATAGGAAAGGTCTACACG+AGG | - | chr8.3:30271128-30271147 | MS.gene056583:intron | 45.0% | |
| ! | AACTTCCGATGGTTTGGATG+AGG | - | chr8.3:30273864-30273883 | MS.gene056583:intron | 45.0% |
| ! | AGCACATGAATGAAGCGCTT+GGG | - | chr8.3:30270828-30270847 | MS.gene056583:CDS | 45.0% |
| ! | CAGCTGCATACTTTTCCAGA+AGG | - | chr8.3:30272496-30272515 | MS.gene056583:intron | 45.0% |
| ! | CTAGCAACCATTTTCTGCCA+TGG | - | chr8.3:30271365-30271384 | MS.gene056583:intron | 45.0% |
| ! | GGAAAAGTATGCAGCTGCAA+TGG | + | chr8.3:30272493-30272512 | None:intergenic | 45.0% |
| ! | GGCGCTTAAATGATGGAGAA+TGG | - | chr8.3:30270849-30270868 | MS.gene056583:CDS | 45.0% |
| ! | GTGTTGACCCATGAGACAAT+AGG | + | chr8.3:30271107-30271126 | None:intergenic | 45.0% |
| ! | GTTTTTGCGCTGTCGTATTG+TGG | - | chr8.3:30273601-30273620 | MS.gene056583:intron | 45.0% |
| !! | CTCCTCTATTACGTTTTGGC+AGG | - | chr8.3:30272276-30272295 | MS.gene056583:intron | 45.0% |
| !! | TCGAACCCCAAAGGTATTAG+AGG | + | chr8.3:30272662-30272681 | None:intergenic | 45.0% |
| !! | TCTAATACCTTTGGGGTTCG+AGG | - | chr8.3:30272661-30272680 | MS.gene056583:intron | 45.0% |
| ATCCCCCCACCTCTTGTAAT+AGG | + | chr8.3:30270800-30270819 | None:intergenic | 50.0% | |
| ATGCTTGTGTGGAGGGAAGA+AGG | + | chr8.3:30270896-30270915 | None:intergenic | 50.0% | |
| ATTCATTCCCTGCTATCGGG+TGG | - | chr8.3:30273836-30273855 | MS.gene056583:intron | 50.0% | |
| CCAACACTGATCAAGCTTCG+TGG | + | chr8.3:30271544-30271563 | None:intergenic | 50.0% | |
| CCACGAAGCTTGATCAGTGT+TGG | - | chr8.3:30271541-30271560 | MS.gene056583:intron | 50.0% | |
| GCCCAAAACTTCCGATGGTT+TGG | - | chr8.3:30273858-30273877 | MS.gene056583:intron | 50.0% | |
| GTCTAAGAAAGTGGCCAGGA+TGG | - | chr8.3:30271153-30271172 | MS.gene056583:intron | 50.0% | |
| GTGCCTACTATCTGTCCTCT+AGG | + | chr8.3:30271085-30271104 | None:intergenic | 50.0% | |
| GTGTTCCCACTAAACCACAG+TGG | + | chr8.3:30271679-30271698 | None:intergenic | 50.0% | |
| TAGGAAAGGTCTACACGAGG+CGG | - | chr8.3:30271131-30271150 | MS.gene056583:intron | 50.0% | |
| TGCTGCCTCATCCAAACCAT+CGG | + | chr8.3:30273872-30273891 | None:intergenic | 50.0% | |
| ! | GAGCACATGAATGAAGCGCT+TGG | - | chr8.3:30270827-30270846 | MS.gene056583:CDS | 50.0% |
| AGGCAATCCTCGAACCCCAA+AGG | + | chr8.3:30272671-30272690 | None:intergenic | 55.0% | |
| CACGAGGCGGTCTAAGAAAG+TGG | - | chr8.3:30271144-30271163 | MS.gene056583:intron | 55.0% | |
| GCGCTTGGGCGCTTAAATGA+TGG | - | chr8.3:30270842-30270861 | MS.gene056583:CDS | 55.0% | |
| ! | TTTTGGGCCACCCGATAGCA+GGG | + | chr8.3:30273846-30273865 | None:intergenic | 55.0% |
| GACTCTCACTAGGCCCATCC+TGG | + | chr8.3:30271170-30271189 | None:intergenic | 60.0% | |
| GGCGGTCTAAGAAAGTGGCC+AGG | - | chr8.3:30271149-30271168 | MS.gene056583:intron | 60.0% | |
| GGGTGGCCCAAAACTTCCGA+TGG | - | chr8.3:30273853-30273872 | MS.gene056583:intron | 60.0% | |
| !! | GTTTTGGGCCACCCGATAGC+AGG | + | chr8.3:30273847-30273866 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 30270770 | 30273981 | 30270770 | ID=MS.gene056583 |
| chr8.3 | mRNA | 30270770 | 30273981 | 30270770 | ID=MS.gene056583.t1;Parent=MS.gene056583 |
| chr8.3 | exon | 30273880 | 30273981 | 30273880 | ID=MS.gene056583.t1.exon1;Parent=MS.gene056583.t1 |
| chr8.3 | CDS | 30273880 | 30273981 | 30273880 | ID=cds.MS.gene056583.t1;Parent=MS.gene056583.t1 |
| chr8.3 | exon | 30272115 | 30272252 | 30272115 | ID=MS.gene056583.t1.exon2;Parent=MS.gene056583.t1 |
| chr8.3 | CDS | 30272115 | 30272252 | 30272115 | ID=cds.MS.gene056583.t1;Parent=MS.gene056583.t1 |
| chr8.3 | exon | 30270770 | 30271054 | 30270770 | ID=MS.gene056583.t1.exon3;Parent=MS.gene056583.t1 |
| chr8.3 | CDS | 30270770 | 30271054 | 30270770 | ID=cds.MS.gene056583.t1;Parent=MS.gene056583.t1 |
| Gene Sequence |
| Protein sequence |
