Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071803.t1 | XP_013444870.1 | 88 | 200 | 22 | 1 | 1 | 198 | 1 | 200 | 4.20E-23 | 118.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071803.t1 | P93788 | 77.6 | 125 | 28 | 0 | 74 | 198 | 74 | 198 | 5.2e-06 | 52.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071803.t1 | A0A072TZF0 | 88.0 | 200 | 22 | 1 | 1 | 198 | 1 | 200 | 3.0e-23 | 118.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056092 | MS.gene071803 | 0.813377 | 2.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071803.t1 | MTR_8g031370 | 97.000 | 200 | 4 | 1 | 1 | 198 | 1 | 200 | 6.53e-131 | 366 |
| MS.gene071803.t1 | MTR_1g100647 | 58.854 | 192 | 66 | 3 | 20 | 198 | 18 | 209 | 1.36e-60 | 188 |
| MS.gene071803.t1 | MTR_7g076730 | 67.769 | 121 | 39 | 0 | 78 | 198 | 13 | 133 | 3.64e-57 | 177 |
| MS.gene071803.t1 | MTR_5g010590 | 59.836 | 122 | 49 | 0 | 77 | 198 | 86 | 207 | 6.87e-44 | 145 |
| MS.gene071803.t1 | MTR_8g097320 | 41.206 | 199 | 115 | 2 | 1 | 198 | 1 | 198 | 1.62e-41 | 139 |
| MS.gene071803.t1 | MTR_8g097320 | 40.594 | 202 | 115 | 3 | 1 | 198 | 1 | 201 | 2.60e-39 | 134 |
| MS.gene071803.t1 | MTR_5g010590 | 60.345 | 58 | 23 | 0 | 77 | 134 | 86 | 143 | 1.80e-15 | 71.6 |
| MS.gene071803.t1 | MTR_1g019280 | 34.615 | 104 | 67 | 1 | 95 | 198 | 451 | 553 | 2.30e-12 | 65.1 |
| MS.gene071803.t1 | MTR_1g052560 | 31.148 | 122 | 84 | 0 | 72 | 193 | 148 | 269 | 2.71e-12 | 64.3 |
| MS.gene071803.t1 | MTR_1g019280 | 32.743 | 113 | 75 | 1 | 86 | 198 | 504 | 615 | 2.97e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071803.t1 | AT3G61260 | 63.030 | 165 | 57 | 3 | 38 | 198 | 48 | 212 | 1.11e-63 | 196 |
| MS.gene071803.t1 | AT3G48940 | 58.784 | 148 | 61 | 0 | 51 | 198 | 28 | 175 | 3.91e-56 | 176 |
| MS.gene071803.t1 | AT5G23750 | 53.158 | 190 | 82 | 3 | 12 | 198 | 16 | 201 | 1.86e-55 | 175 |
| MS.gene071803.t1 | AT2G45820 | 57.754 | 187 | 61 | 4 | 15 | 198 | 19 | 190 | 4.28e-54 | 171 |
| MS.gene071803.t1 | AT5G23750 | 63.492 | 126 | 46 | 0 | 73 | 198 | 77 | 202 | 1.88e-53 | 170 |
| MS.gene071803.t1 | AT5G23750 | 63.492 | 126 | 46 | 0 | 73 | 198 | 104 | 229 | 3.11e-53 | 170 |
| MS.gene071803.t1 | AT1G63295 | 43.802 | 121 | 65 | 2 | 81 | 198 | 31 | 151 | 1.08e-22 | 89.7 |
| MS.gene071803.t1 | AT1G63295 | 43.802 | 121 | 65 | 2 | 81 | 198 | 71 | 191 | 1.49e-22 | 90.5 |
| MS.gene071803.t1 | AT4G00670 | 42.991 | 107 | 60 | 1 | 93 | 198 | 17 | 123 | 3.40e-22 | 87.4 |
| MS.gene071803.t1 | AT1G30320 | 37.037 | 108 | 64 | 1 | 95 | 198 | 401 | 508 | 1.22e-11 | 63.2 |
Find 47 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTGCTCTTGCAGAAAT+AGG | 0.169856 | 8.3:+64096194 | MS.gene071803:intron |
| AAGCATCCAAGGAGTTTCTT+TGG | 0.251656 | 8.3:-64097603 | None:intergenic |
| TTCTTACTTATTCTCTGCTT+TGG | 0.294744 | 8.3:-64096267 | None:intergenic |
| GAGCAGCTTCTTGCTTGGTT+TGG | 0.325803 | 8.3:-64093521 | None:intergenic |
| AACACTTTGGCAGGAGCAAT+TGG | 0.362647 | 8.3:+64097422 | MS.gene071803:intron |
| GCTCTCTACTGTTGCTGCTT+GGG | 0.383440 | 8.3:+64096598 | MS.gene071803:CDS |
| GGCTCAACCGCAGCAGGAGC+TGG | 0.397851 | 8.3:-64093573 | None:intergenic |
| ACCGGTGCCGGTGCCGGAGC+AGG | 0.401388 | 8.3:-64093543 | None:intergenic |
| TCCTGCTCCGGCACCGGCAC+CGG | 0.408876 | 8.3:+64093542 | MS.gene071803:CDS |
| ATATTGCTCTTGCAGAAATA+GGG | 0.422448 | 8.3:+64096195 | MS.gene071803:CDS |
| GTTGGAACCGGTGCCGGTGC+CGG | 0.434603 | 8.3:-64093549 | None:intergenic |
| ACCTCTAGCTGAGGCTCCTC+CGG | 0.444094 | 8.3:+64093596 | MS.gene071803:CDS |
| AGCAGGAGCAGCTTCTTGCT+TGG | 0.444391 | 8.3:-64093526 | None:intergenic |
| AGAGGTGGCTCAACCGCAGC+AGG | 0.447015 | 8.3:-64093579 | None:intergenic |
| AGCTCTCTACTGTTGCTGCT+TGG | 0.453757 | 8.3:+64096597 | MS.gene071803:CDS |
| GCTGCAAAACATAATGCAAC+AGG | 0.462965 | 8.3:+64097573 | MS.gene071803:CDS |
| AGCTGCTCCTGCTCCGGCAC+CGG | 0.468982 | 8.3:+64093536 | MS.gene071803:CDS |
| GCAGGAGCTGGAGTTGGAAC+CGG | 0.472694 | 8.3:-64093561 | None:intergenic |
| CAGAAATAGGGAAAGAGAAA+AGG | 0.476722 | 8.3:+64096207 | MS.gene071803:CDS |
| GCAAGAAGCTGCTCCTGCTC+CGG | 0.483689 | 8.3:+64093530 | MS.gene071803:CDS |
| GCTGGAGTTGGAACCGGTGC+CGG | 0.491097 | 8.3:-64093555 | None:intergenic |
| AACAAGACTAACCTCTATCA+AGG | 0.505662 | 8.3:-64095655 | None:intergenic |
| AAGAATGCATCCCTTGATAG+AGG | 0.508900 | 8.3:+64095644 | MS.gene071803:CDS |
| GGTTATCTAATGTGAAGGCA+TGG | 0.509564 | 8.3:+64096228 | MS.gene071803:CDS |
| TTGGTTTGGAGTTCAGCCAT+AGG | 0.510361 | 8.3:-64093507 | None:intergenic |
| ACAGTTCCAAAGAAACTCCT+TGG | 0.510701 | 8.3:+64097597 | MS.gene071803:CDS |
| GTGTCATCTGCCACAGGTGG+CGG | 0.529057 | 8.3:-64093648 | None:intergenic |
| CATCATATTAAAAGCATCCA+AGG | 0.533934 | 8.3:-64097614 | None:intergenic |
| AATCAAGAACAAGGTGGCAA+TGG | 0.536099 | 8.3:+64097473 | MS.gene071803:CDS |
| ACCGCAGCAGGAGCTGGAGT+TGG | 0.536338 | 8.3:-64093567 | None:intergenic |
| CACAAAAGCACTTGTTGTTG+TGG | 0.554801 | 8.3:+64093668 | MS.gene071803:CDS |
| GTTATCTAATGTGAAGGCAT+GGG | 0.574842 | 8.3:+64096229 | MS.gene071803:CDS |
| AGCGGCGGCACCGCCACCTG+TGG | 0.575668 | 8.3:+64093638 | MS.gene071803:CDS |
| TCCAACTCCAGCTCCTGCTG+CGG | 0.577619 | 8.3:+64093566 | MS.gene071803:CDS |
| GAAAAGGTTATCTAATGTGA+AGG | 0.581637 | 8.3:+64096223 | MS.gene071803:CDS |
| TGAAGCAATTCTCAAGGCAG+AGG | 0.599324 | 8.3:+64097545 | MS.gene071803:CDS |
| ACGTGCTGAAGCAATTCTCA+AGG | 0.603219 | 8.3:+64097539 | MS.gene071803:CDS |
| ACCGGAGGAGCCTCAGCTAG+AGG | 0.609180 | 8.3:-64093597 | None:intergenic |
| ACAAGACTAACCTCTATCAA+GGG | 0.621639 | 8.3:-64095654 | None:intergenic |
| GGAGGAGCCTCAGCTAGAGG+TGG | 0.640678 | 8.3:-64093594 | None:intergenic |
| TGGTGAGAAAATCAAGAACA+AGG | 0.641835 | 8.3:+64097464 | MS.gene071803:CDS |
| AATGGTTCACAAACAAGCAG+AGG | 0.652178 | 8.3:+64097491 | MS.gene071803:CDS |
| TTTGTGTCATCTGCCACAGG+TGG | 0.658313 | 8.3:-64093651 | None:intergenic |
| TGTTGTTGAAAAGAAAGCGG+CGG | 0.659083 | 8.3:+64093623 | MS.gene071803:CDS |
| GGTTGAGCCACCTCTAGCTG+AGG | 0.662051 | 8.3:+64093587 | MS.gene071803:CDS |
| TAATGTTGTTGAAAAGAAAG+CGG | 0.672280 | 8.3:+64093620 | MS.gene071803:CDS |
| TGAGAAAATCAAGAACAAGG+TGG | 0.758003 | 8.3:+64097467 | MS.gene071803:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTGAAATTAGTTTA+AGG | - | chr8.3:64095330-64095349 | None:intergenic | 10.0% |
| !!! | AATTGCATAAAAATATTTTA+GGG | + | chr8.3:64096343-64096362 | MS.gene071803:intron | 10.0% |
| !!! | ATATTTTGAAATTAGTTTAA+GGG | - | chr8.3:64095329-64095348 | None:intergenic | 10.0% |
| !!! | ATTTATTTTTTGATAAGATT+CGG | - | chr8.3:64095015-64095034 | None:intergenic | 10.0% |
| !!! | TAATTGCATAAAAATATTTT+AGG | + | chr8.3:64096342-64096361 | MS.gene071803:intron | 10.0% |
| !!! | TATTATTATTGATTAAAAGA+TGG | + | chr8.3:64096711-64096730 | MS.gene071803:intron | 10.0% |
| !! | AACCTAACTAAATATATAAA+AGG | + | chr8.3:64094572-64094591 | MS.gene071803:intron | 15.0% |
| !! | GTTAATATCAAATATCAATA+AGG | - | chr8.3:64095714-64095733 | None:intergenic | 15.0% |
| !! | GTTTAATATCCTAAAATTTA+GGG | + | chr8.3:64096542-64096561 | MS.gene071803:intron | 15.0% |
| !! | TAATGAAAATCACTTTAATT+TGG | - | chr8.3:64095304-64095323 | None:intergenic | 15.0% |
| !! | TCCTAAAAGAATAATTATTA+TGG | - | chr8.3:64094782-64094801 | None:intergenic | 15.0% |
| !! | TGTTTAATATCCTAAAATTT+AGG | + | chr8.3:64096541-64096560 | MS.gene071803:intron | 15.0% |
| !!! | AAGATAAAGATAAGATTTTA+TGG | + | chr8.3:64096814-64096833 | MS.gene071803:intron | 15.0% |
| !!! | AATTAAATTTTTGAACACTT+TGG | + | chr8.3:64097409-64097428 | MS.gene071803:intron | 15.0% |
| !!! | ATAATTCTGATATATGTTTT+TGG | + | chr8.3:64094218-64094237 | MS.gene071803:intron | 15.0% |
| !!! | ATACATTTTTTCTTTTTTTG+AGG | - | chr8.3:64095536-64095555 | None:intergenic | 15.0% |
| !!! | TAATTCTGATATATGTTTTT+GGG | + | chr8.3:64094219-64094238 | MS.gene071803:intron | 15.0% |
| !!! | TACATTTTTTCTTTTTTTGA+GGG | - | chr8.3:64095535-64095554 | None:intergenic | 15.0% |
| !!! | TATTTTGAAATTAGTTTAAG+GGG | - | chr8.3:64095328-64095347 | None:intergenic | 15.0% |
| !!! | TCCATAATAATTATTCTTTT+AGG | + | chr8.3:64094778-64094797 | MS.gene071803:intron | 15.0% |
| !!! | TTTTGAATGAAAAAATTGAA+GGG | + | chr8.3:64093806-64093825 | MS.gene071803:intron | 15.0% |
| !!! | TTTTGAGTAAATATCTAAAA+TGG | - | chr8.3:64096430-64096449 | None:intergenic | 15.0% |
| !! | AAAAGCCAAAAAATTAAAGA+AGG | - | chr8.3:64093718-64093737 | None:intergenic | 20.0% |
| !! | AATATTTCTCTCATATCATT+AGG | + | chr8.3:64095151-64095170 | MS.gene071803:intron | 20.0% |
| !! | AATTAGAATCCAATAAAGAA+AGG | + | chr8.3:64095487-64095506 | MS.gene071803:intron | 20.0% |
| !! | AGCATAATTCTTTATAAAGA+AGG | - | chr8.3:64097044-64097063 | None:intergenic | 20.0% |
| !! | ATAAAGAAGGATTCAATATA+TGG | - | chr8.3:64097031-64097050 | None:intergenic | 20.0% |
| !! | ATAGAACAAGAAATGATTTA+AGG | - | chr8.3:64095255-64095274 | None:intergenic | 20.0% |
| !! | ATTAGAAAAGAAACTCTAAA+TGG | + | chr8.3:64097072-64097091 | MS.gene071803:intron | 20.0% |
| !! | TGTATCAATATTGTTTCATA+AGG | + | chr8.3:64093777-64093796 | MS.gene071803:intron | 20.0% |
| !! | TTCTTTATTGGATTCTAATT+AGG | - | chr8.3:64095487-64095506 | None:intergenic | 20.0% |
| !! | TTTGAATGAAAAAATTGAAG+GGG | + | chr8.3:64093807-64093826 | MS.gene071803:intron | 20.0% |
| !!! | AAATATTTTAGGGATCATTT+TGG | + | chr8.3:64096353-64096372 | MS.gene071803:intron | 20.0% |
| !!! | AAGACAATGTATAATTTTCT+AGG | - | chr8.3:64095077-64095096 | None:intergenic | 20.0% |
| !!! | ATTTTTGTGTTATCTTTACA+GGG | + | chr8.3:64096565-64096584 | MS.gene071803:intron | 20.0% |
| !!! | GAATTCCTTCTTTAATTTTT+TGG | + | chr8.3:64093710-64093729 | MS.gene071803:intron | 20.0% |
| !!! | GACCTTTTATATATTTAGTT+AGG | - | chr8.3:64094577-64094596 | None:intergenic | 20.0% |
| !!! | GTTTTGAATGAAAAAATTGA+AGG | + | chr8.3:64093805-64093824 | MS.gene071803:intron | 20.0% |
| !!! | TAAATGATTCTTTGATTTGT+AGG | + | chr8.3:64095388-64095407 | MS.gene071803:intron | 20.0% |
| !!! | TATCTTTTCCATTTTTCTTT+TGG | + | chr8.3:64095594-64095613 | MS.gene071803:intron | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+AGG | + | chr8.3:64096031-64096050 | MS.gene071803:intron | 20.0% |
| !!! | TTATATATTTAGTTAGGTTG+AGG | - | chr8.3:64094571-64094590 | None:intergenic | 20.0% |
| !!! | TTTGAGTTAATTTCAATTGT+TGG | + | chr8.3:64093945-64093964 | MS.gene071803:intron | 20.0% |
| ! | AAAAAAACATATTTGAGGAG+AGG | - | chr8.3:64096164-64096183 | None:intergenic | 25.0% |
| ! | AAACATTTATCATATCTCAC+TGG | + | chr8.3:64095423-64095442 | MS.gene071803:intron | 25.0% |
| ! | ACCACAAAAAAACATATTTG+AGG | - | chr8.3:64096169-64096188 | None:intergenic | 25.0% |
| ! | ACTGAACAATTCATTCTTAA+TGG | - | chr8.3:64094635-64094654 | None:intergenic | 25.0% |
| ! | ATGATGTGACATGTAAATAT+GGG | + | chr8.3:64094441-64094460 | MS.gene071803:intron | 25.0% |
| ! | ATTTGGAAAATTCATACAAG+AGG | - | chr8.3:64094346-64094365 | None:intergenic | 25.0% |
| ! | CTATAAATTGTGATGTATGT+TGG | + | chr8.3:64096739-64096758 | MS.gene071803:intron | 25.0% |
| ! | CTCAAATGAAAAATGAGTAT+CGG | + | chr8.3:64094873-64094892 | MS.gene071803:intron | 25.0% |
| ! | GACCATAACTAATAATGAAA+AGG | - | chr8.3:64094408-64094427 | None:intergenic | 25.0% |
| ! | GGTGAAAATTAATGAAAGTA+TGG | + | chr8.3:64093828-64093847 | MS.gene071803:intron | 25.0% |
| ! | TAATGTTGTTGAAAAGAAAG+CGG | + | chr8.3:64093620-64093639 | MS.gene071803:CDS | 25.0% |
| ! | TACATGATTCCTTTCTTTAT+TGG | - | chr8.3:64095499-64095518 | None:intergenic | 25.0% |
| ! | TATGATGTGACATGTAAATA+TGG | + | chr8.3:64094440-64094459 | MS.gene071803:intron | 25.0% |
| ! | TCTGTAAACCAAAAGAAAAA+TGG | - | chr8.3:64095605-64095624 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr8.3:64097195-64097214 | MS.gene071803:intron | 25.0% |
| ! | TTCATTATTAGTTATGGTCT+TGG | + | chr8.3:64094409-64094428 | MS.gene071803:intron | 25.0% |
| ! | TTTCCCAATTCATACAAAAA+TGG | - | chr8.3:64094283-64094302 | None:intergenic | 25.0% |
| !! | AAGTACTTGATAGAGTATTT+GGG | + | chr8.3:64095819-64095838 | MS.gene071803:intron | 25.0% |
| !! | ACTATTTTCATGTAAGCTAT+AGG | - | chr8.3:64095934-64095953 | None:intergenic | 25.0% |
| !! | CACAAAAATCCCTAAATTTT+AGG | - | chr8.3:64096554-64096573 | None:intergenic | 25.0% |
| !! | GATAAAGCACATCTTTTTAA+AGG | + | chr8.3:64096773-64096792 | MS.gene071803:intron | 25.0% |
| !! | GATTTTTGTGTTATCTTTAC+AGG | + | chr8.3:64096564-64096583 | MS.gene071803:intron | 25.0% |
| !! | GTCTAAGATAATTACATCAA+AGG | - | chr8.3:64095565-64095584 | None:intergenic | 25.0% |
| !! | TAAGTACTTGATAGAGTATT+TGG | + | chr8.3:64095818-64095837 | MS.gene071803:intron | 25.0% |
| !! | TGCCTTTTCATTATTAGTTA+TGG | + | chr8.3:64094403-64094422 | MS.gene071803:intron | 25.0% |
| !! | TTCTTTTCAACAACATTAAC+CGG | - | chr8.3:64093618-64093637 | None:intergenic | 25.0% |
| !! | TTGGAATATTGATAACATGA+GGG | + | chr8.3:64096372-64096391 | MS.gene071803:intron | 25.0% |
| !! | TTTGGAATATTGATAACATG+AGG | + | chr8.3:64096371-64096390 | MS.gene071803:intron | 25.0% |
| !!! | AAACTGTTCTAAGAGATTAA+TGG | - | chr8.3:64097372-64097391 | None:intergenic | 25.0% |
| !!! | AATCACTTTAATTTGGACAA+AGG | - | chr8.3:64095297-64095316 | None:intergenic | 25.0% |
| !!! | AGAACCATTTTTGTATGAAT+TGG | + | chr8.3:64094276-64094295 | MS.gene071803:intron | 25.0% |
| !!! | ATTTGTTCATTGTTTTGTGA+AGG | + | chr8.3:64093918-64093937 | MS.gene071803:intron | 25.0% |
| !!! | ATTTTTCTTTTGGTTTACAG+AGG | + | chr8.3:64095604-64095623 | MS.gene071803:intron | 25.0% |
| !!! | GAACCATTTTTGTATGAATT+GGG | + | chr8.3:64094277-64094296 | MS.gene071803:intron | 25.0% |
| !!! | TCCTCAAATATGTTTTTTTG+TGG | + | chr8.3:64096165-64096184 | MS.gene071803:intron | 25.0% |
| !!! | TTTTCTTTTTTTGAGGGAAA+AGG | - | chr8.3:64095529-64095548 | None:intergenic | 25.0% |
| !!! | TTTTGGCTTTTAGAAATCAT+GGG | + | chr8.3:64093727-64093746 | MS.gene071803:intron | 25.0% |
| !!! | TTTTTGGCTTTTAGAAATCA+TGG | + | chr8.3:64093726-64093745 | MS.gene071803:intron | 25.0% |
| AAACGCTAATATTGATAGGT+CGG | + | chr8.3:64097326-64097345 | MS.gene071803:intron | 30.0% | |
| AAAGATGTGCTTTATCTGTT+TGG | - | chr8.3:64096769-64096788 | None:intergenic | 30.0% | |
| AAAGGTCTAACCATGAAATT+TGG | + | chr8.3:64094590-64094609 | MS.gene071803:intron | 30.0% | |
| ACCATTTGAACCAAATTTCA+TGG | - | chr8.3:64094603-64094622 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | + | chr8.3:64095793-64095812 | MS.gene071803:intron | 30.0% | |
| ACTTGTTTCATAACCATCAA+AGG | + | chr8.3:64095757-64095776 | MS.gene071803:intron | 30.0% | |
| AGCTCAACTAAGAAAAATTG+AGG | + | chr8.3:64096646-64096665 | MS.gene071803:CDS | 30.0% | |
| ATATTGCTCTTGCAGAAATA+GGG | + | chr8.3:64096195-64096214 | MS.gene071803:CDS | 30.0% | |
| CAAGACAATAATTGGATTGA+AGG | - | chr8.3:64096970-64096989 | None:intergenic | 30.0% | |
| CTGAAAACGCTAATATTGAT+AGG | + | chr8.3:64097322-64097341 | MS.gene071803:intron | 30.0% | |
| CTTTGATTAAGTGCTTATGT+TGG | + | chr8.3:64094024-64094043 | MS.gene071803:intron | 30.0% | |
| GAAAAGGTTATCTAATGTGA+AGG | + | chr8.3:64096223-64096242 | MS.gene071803:CDS | 30.0% | |
| GACAAAAGCAAGACAATAAT+TGG | - | chr8.3:64096978-64096997 | None:intergenic | 30.0% | |
| GAGAAAAAGAAAGCAGAATA+TGG | + | chr8.3:64097444-64097463 | MS.gene071803:CDS | 30.0% | |
| GCTCTCAATTCTTAAGAAAA+TGG | + | chr8.3:64094162-64094181 | MS.gene071803:intron | 30.0% | |
| TCATATTCTTACCAGACATT+TGG | + | chr8.3:64096942-64096961 | MS.gene071803:intron | 30.0% | |
| TCGATTACTGAAACAATTCA+GGG | + | chr8.3:64094666-64094685 | MS.gene071803:intron | 30.0% | |
| TGATGTGACATGTAAATATG+GGG | + | chr8.3:64094442-64094461 | MS.gene071803:intron | 30.0% | |
| TTCGATTACTGAAACAATTC+AGG | + | chr8.3:64094665-64094684 | MS.gene071803:intron | 30.0% | |
| TTCTTACTTATTCTCTGCTT+TGG | - | chr8.3:64096270-64096289 | None:intergenic | 30.0% | |
| TTTGATCAAATTGAAGAGTG+TGG | + | chr8.3:64094120-64094139 | MS.gene071803:intron | 30.0% | |
| ! | AAATTTTTGAACACTTTGGC+AGG | + | chr8.3:64097413-64097432 | MS.gene071803:intron | 30.0% |
| ! | ACCATGAAATTTGGTTCAAA+TGG | + | chr8.3:64094599-64094618 | MS.gene071803:intron | 30.0% |
| ! | ACTTTATTTCCAAAAACTCG+AGG | + | chr8.3:64095891-64095910 | MS.gene071803:intron | 30.0% |
| ! | ATAAGTTATCCTCGAGTTTT+TGG | - | chr8.3:64095903-64095922 | None:intergenic | 30.0% |
| ! | ATTCAATATATGGACTGCAT+AGG | - | chr8.3:64097021-64097040 | None:intergenic | 30.0% |
| ! | CTGATAATTTAGAGTTCAGT+CGG | - | chr8.3:64094710-64094729 | None:intergenic | 30.0% |
| ! | GAAGATATGAACAAAGCATT+TGG | - | chr8.3:64094363-64094382 | None:intergenic | 30.0% |
| ! | GATTACAGTAATCTAGAGTT+CGG | - | chr8.3:64094977-64094996 | None:intergenic | 30.0% |
| ! | TAGTGTAAGGTACCTTTATT+GGG | - | chr8.3:64095196-64095215 | None:intergenic | 30.0% |
| ! | TGATAAGATTCGGTTCATAA+CGG | - | chr8.3:64095005-64095024 | None:intergenic | 30.0% |
| ! | TGATAATTTAGAGTTCAGTC+GGG | - | chr8.3:64094709-64094728 | None:intergenic | 30.0% |
| ! | TGATACTTTAAGAGTCTGTT+TGG | - | chr8.3:64096500-64096519 | None:intergenic | 30.0% |
| ! | TGTCTTTGAAAAGCTACTTT+GGG | + | chr8.3:64095091-64095110 | MS.gene071803:intron | 30.0% |
| ! | TTGTCTTTGAAAAGCTACTT+TGG | + | chr8.3:64095090-64095109 | MS.gene071803:intron | 30.0% |
| AACAAGACTAACCTCTATCA+AGG | - | chr8.3:64095658-64095677 | None:intergenic | 35.0% | |
| AACTTTCACTCAACAAAGCT+TGG | + | chr8.3:64095225-64095244 | MS.gene071803:intron | 35.0% | |
| AAGAGATTAATGGCGAAACT+CGG | - | chr8.3:64097362-64097381 | None:intergenic | 35.0% | |
| ACAAGACTAACCTCTATCAA+GGG | - | chr8.3:64095657-64095676 | None:intergenic | 35.0% | |
| AGCACATATTCATGTTACCA+AGG | - | chr8.3:64096115-64096134 | None:intergenic | 35.0% | |
| ATAACCATCAAAGGTCTATC+TGG | + | chr8.3:64095766-64095785 | MS.gene071803:intron | 35.0% | |
| CAGAAATAGGGAAAGAGAAA+AGG | + | chr8.3:64096207-64096226 | MS.gene071803:CDS | 35.0% | |
| CGACTGAACTCTAAATTATC+AGG | + | chr8.3:64094708-64094727 | MS.gene071803:intron | 35.0% | |
| GAGCAAAAACTATAGTTAGC+TGG | - | chr8.3:64094549-64094568 | None:intergenic | 35.0% | |
| GATATTGCTCTTGCAGAAAT+AGG | + | chr8.3:64096194-64096213 | MS.gene071803:intron | 35.0% | |
| TATTAATGATGTCAGCGTGT+CGG | - | chr8.3:64097156-64097175 | None:intergenic | 35.0% | |
| TCAACATTGTCAGTTGAGTT+AGG | - | chr8.3:64097296-64097315 | None:intergenic | 35.0% | |
| TCACAATTCTCTATCTTCCT+TGG | + | chr8.3:64096095-64096114 | MS.gene071803:intron | 35.0% | |
| TGACATGTAAATATGGGGTA+GGG | + | chr8.3:64094447-64094466 | MS.gene071803:intron | 35.0% | |
| TGAGAAAATCAAGAACAAGG+TGG | + | chr8.3:64097467-64097486 | MS.gene071803:CDS | 35.0% | |
| TGGTGAGAAAATCAAGAACA+AGG | + | chr8.3:64097464-64097483 | MS.gene071803:CDS | 35.0% | |
| TTGTTTCAGTAATCGAACTC+AGG | - | chr8.3:64094662-64094681 | None:intergenic | 35.0% | |
| TTTCTTTGCCTTGCAAAAGT+TGG | + | chr8.3:64094479-64094498 | MS.gene071803:intron | 35.0% | |
| ! | AGTGTAAGGTACCTTTATTG+GGG | - | chr8.3:64095195-64095214 | None:intergenic | 35.0% |
| ! | CTAGTGTAAGGTACCTTTAT+TGG | - | chr8.3:64095197-64095216 | None:intergenic | 35.0% |
| ! | GTTATCTAATGTGAAGGCAT+GGG | + | chr8.3:64096229-64096248 | MS.gene071803:CDS | 35.0% |
| ! | TAATGAAAAGGCATGCCTAA+CGG | - | chr8.3:64094396-64094415 | None:intergenic | 35.0% |
| ! | TTTTCAACAACATTAACCGG+AGG | - | chr8.3:64093615-64093634 | None:intergenic | 35.0% |
| !!! | AGGGATGCATTCTTTTTTAC+AGG | - | chr8.3:64095638-64095657 | None:intergenic | 35.0% |
| !!! | GCATTCTTTTTTACAGGTTC+TGG | - | chr8.3:64095632-64095651 | None:intergenic | 35.0% |
| AAGAATGCATCCCTTGATAG+AGG | + | chr8.3:64095644-64095663 | MS.gene071803:CDS | 40.0% | |
| AAGCATCCAAGGAGTTTCTT+TGG | - | chr8.3:64097606-64097625 | None:intergenic | 40.0% | |
| AATCAAGAACAAGGTGGCAA+TGG | + | chr8.3:64097473-64097492 | MS.gene071803:CDS | 40.0% | |
| ACAGTTCCAAAGAAACTCCT+TGG | + | chr8.3:64097597-64097616 | MS.gene071803:CDS | 40.0% | |
| AGGTACCTTACACTAGACTT+GGG | + | chr8.3:64095201-64095220 | MS.gene071803:intron | 40.0% | |
| AGTTTCCCAAGTCTAGTGTA+AGG | - | chr8.3:64095209-64095228 | None:intergenic | 40.0% | |
| ATTGTGACAGCAAGAAACCT+AGG | - | chr8.3:64096082-64096101 | None:intergenic | 40.0% | |
| CAATCCAGATAGACCTTTGA+TGG | - | chr8.3:64095773-64095792 | None:intergenic | 40.0% | |
| CACAGTGCTAATATATGCCT+AGG | + | chr8.3:64096062-64096081 | MS.gene071803:intron | 40.0% | |
| GATGTGCTTTATCTGTTTGG+TGG | - | chr8.3:64096766-64096785 | None:intergenic | 40.0% | |
| GATTGAAGGTTCCAAATGTC+TGG | - | chr8.3:64096956-64096975 | None:intergenic | 40.0% | |
| GCTGCAAAACATAATGCAAC+AGG | + | chr8.3:64097573-64097592 | MS.gene071803:CDS | 40.0% | |
| GGTTATCTAATGTGAAGGCA+TGG | + | chr8.3:64096228-64096247 | MS.gene071803:CDS | 40.0% | |
| GTCGGGAGGTAAATTAAGTT+TGG | - | chr8.3:64094692-64094711 | None:intergenic | 40.0% | |
| GTGACATGTAAATATGGGGT+AGG | + | chr8.3:64094446-64094465 | MS.gene071803:intron | 40.0% | |
| GTTGAGTTAGGTATGAAGCA+CGG | - | chr8.3:64097284-64097303 | None:intergenic | 40.0% | |
| TCTTCAATCAGTGATCCGTT+AGG | + | chr8.3:64094378-64094397 | MS.gene071803:intron | 40.0% | |
| TGTTGTTGAAAAGAAAGCGG+CGG | + | chr8.3:64093623-64093642 | MS.gene071803:CDS | 40.0% | |
| TTGAGGAGAGGTTTCATAAG+AGG | - | chr8.3:64096152-64096171 | None:intergenic | 40.0% | |
| ! | AAGGTACCTTACACTAGACT+TGG | + | chr8.3:64095200-64095219 | MS.gene071803:intron | 40.0% |
| ! | CCAATGCATTTAGAACACTC+CGG | - | chr8.3:64094750-64094769 | None:intergenic | 40.0% |
| ! | GAGTCAAACCAACTTTTGCA+AGG | - | chr8.3:64094490-64094509 | None:intergenic | 40.0% |
| ! | GTGTAAGGTACCTTTATTGG+GGG | - | chr8.3:64095194-64095213 | None:intergenic | 40.0% |
| ! | TAATTTAGAGTTCAGTCGGG+AGG | - | chr8.3:64094706-64094725 | None:intergenic | 40.0% |
| ! | TGTAAGGTACCTTTATTGGG+GGG | - | chr8.3:64095193-64095212 | None:intergenic | 40.0% |
| ! | TTTAGAACACTCCGGTTCTA+AGG | - | chr8.3:64094742-64094761 | None:intergenic | 40.0% |
| !! | CACAAAAGCACTTGTTGTTG+TGG | + | chr8.3:64093668-64093687 | MS.gene071803:CDS | 40.0% |
| AACACTTTGGCAGGAGCAAT+TGG | + | chr8.3:64097422-64097441 | MS.gene071803:intron | 45.0% | |
| ACACGACACATGTCTGATAC+CGG | + | chr8.3:64097235-64097254 | MS.gene071803:intron | 45.0% | |
| ACCTAACTCCCTATGAAGCA+CGG | + | chr8.3:64097103-64097122 | MS.gene071803:intron | 45.0% | |
| ACCTGTCATTGCAGCATAGT+GGG | - | chr8.3:64095355-64095374 | None:intergenic | 45.0% | |
| ACGTGCTGAAGCAATTCTCA+AGG | + | chr8.3:64097539-64097558 | MS.gene071803:CDS | 45.0% | |
| CCATAAATCCCCCCCAATAA+AGG | + | chr8.3:64095181-64095200 | MS.gene071803:intron | 45.0% | |
| CCTTTATTGGGGGGGATTTA+TGG | - | chr8.3:64095184-64095203 | None:intergenic | 45.0% | |
| TAATGGCGAAACTCGGATGA+AGG | - | chr8.3:64097355-64097374 | None:intergenic | 45.0% | |
| TGAAGCAATTCTCAAGGCAG+AGG | + | chr8.3:64097545-64097564 | MS.gene071803:CDS | 45.0% | |
| ! | CCGGAGTGTTCTAAATGCAT+TGG | + | chr8.3:64094747-64094766 | MS.gene071803:intron | 45.0% |
| ! | GTAAGGTACCTTTATTGGGG+GGG | - | chr8.3:64095192-64095211 | None:intergenic | 45.0% |
| ! | TCTCTCACCTTTTGACACAC+TGG | - | chr8.3:64095118-64095137 | None:intergenic | 45.0% |
| ! | TTTGGGACCAGTGTGTCAAA+AGG | + | chr8.3:64095108-64095127 | MS.gene071803:intron | 45.0% |
| !! | AACACTCCGGTTCTAAGGAA+AGG | - | chr8.3:64094737-64094756 | None:intergenic | 45.0% |
| !! | ACACTCCGGTTCTAAGGAAA+GGG | - | chr8.3:64094736-64094755 | None:intergenic | 45.0% |
| AGCTCTCTACTGTTGCTGCT+TGG | + | chr8.3:64096597-64096616 | MS.gene071803:CDS | 50.0% | |
| AGGACCCCTTTCCTTAGAAC+CGG | + | chr8.3:64094728-64094747 | MS.gene071803:intron | 50.0% | |
| ATTGGGGGGGATTTATGGTG+AGG | - | chr8.3:64095179-64095198 | None:intergenic | 50.0% | |
| CACGACACATGTCTGATACC+GGG | + | chr8.3:64097236-64097255 | MS.gene071803:intron | 50.0% | |
| CTCCCTATGAAGCACGGATA+CGG | + | chr8.3:64097109-64097128 | MS.gene071803:intron | 50.0% | |
| GACCTGTCATTGCAGCATAG+TGG | - | chr8.3:64095356-64095375 | None:intergenic | 50.0% | |
| GAGCAGCTTCTTGCTTGGTT+TGG | - | chr8.3:64093524-64093543 | None:intergenic | 50.0% | |
| GTCCGTATCCGTGCTTCATA+GGG | - | chr8.3:64097114-64097133 | None:intergenic | 50.0% | |
| TCCCACTATGCTGCAATGAC+AGG | + | chr8.3:64095351-64095370 | MS.gene071803:intron | 50.0% | |
| TCCGTGCTTCATAGGGAGTT+AGG | - | chr8.3:64097107-64097126 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | chr8.3:64097115-64097134 | None:intergenic | 50.0% | |
| TTTGTGTCATCTGCCACAGG+TGG | - | chr8.3:64093654-64093673 | None:intergenic | 50.0% | |
| ! | GCTCTCTACTGTTGCTGCTT+GGG | + | chr8.3:64096598-64096617 | MS.gene071803:CDS | 50.0% |
| ! | GCTTTTGTGTCATCTGCCAC+AGG | - | chr8.3:64093657-64093676 | None:intergenic | 50.0% |
| !! | CACTCCGGTTCTAAGGAAAG+GGG | - | chr8.3:64094735-64094754 | None:intergenic | 50.0% |
| AGCAGGAGCAGCTTCTTGCT+TGG | - | chr8.3:64093529-64093548 | None:intergenic | 55.0% | |
| TATGAAGCACGGACGCTCCT+AGG | - | chr8.3:64097273-64097292 | None:intergenic | 55.0% | |
| TCCTAGGATTAGGCGTGTCC+CGG | - | chr8.3:64097257-64097276 | None:intergenic | 55.0% | |
| ACCGGGACACGCCTAATCCT+AGG | + | chr8.3:64097253-64097272 | MS.gene071803:intron | 60.0% | |
| ACCTCTAGCTGAGGCTCCTC+CGG | + | chr8.3:64093596-64093615 | MS.gene071803:CDS | 60.0% | |
| GCAAGAAGCTGCTCCTGCTC+CGG | + | chr8.3:64093530-64093549 | MS.gene071803:CDS | 60.0% | |
| GCACGGACGCTCCTAGGATT+AGG | - | chr8.3:64097267-64097286 | None:intergenic | 60.0% | |
| GCAGGAGCTGGAGTTGGAAC+CGG | - | chr8.3:64093564-64093583 | None:intergenic | 60.0% | |
| GGTTGAGCCACCTCTAGCTG+AGG | + | chr8.3:64093587-64093606 | MS.gene071803:CDS | 60.0% | |
| GTGTCATCTGCCACAGGTGG+CGG | - | chr8.3:64093651-64093670 | None:intergenic | 60.0% | |
| TCCAACTCCAGCTCCTGCTG+CGG | + | chr8.3:64093566-64093585 | MS.gene071803:CDS | 60.0% | |
| ACCGCAGCAGGAGCTGGAGT+TGG | - | chr8.3:64093570-64093589 | None:intergenic | 65.0% | |
| ACCGGAGGAGCCTCAGCTAG+AGG | - | chr8.3:64093600-64093619 | None:intergenic | 65.0% | |
| AGAGGTGGCTCAACCGCAGC+AGG | - | chr8.3:64093582-64093601 | None:intergenic | 65.0% | |
| GCTGGAGTTGGAACCGGTGC+CGG | - | chr8.3:64093558-64093577 | None:intergenic | 65.0% | |
| GGAGGAGCCTCAGCTAGAGG+TGG | - | chr8.3:64093597-64093616 | None:intergenic | 65.0% | |
| AGCTGCTCCTGCTCCGGCAC+CGG | + | chr8.3:64093536-64093555 | MS.gene071803:CDS | 70.0% | |
| GGCTCAACCGCAGCAGGAGC+TGG | - | chr8.3:64093576-64093595 | None:intergenic | 70.0% | |
| !! | GTTGGAACCGGTGCCGGTGC+CGG | - | chr8.3:64093552-64093571 | None:intergenic | 70.0% |
| !! | TCCTGCTCCGGCACCGGCAC+CGG | + | chr8.3:64093542-64093561 | MS.gene071803:CDS | 75.0% |
| ! | AGCGGCGGCACCGCCACCTG+TGG | + | chr8.3:64093638-64093657 | MS.gene071803:CDS | 80.0% |
| !!! | ACCGGTGCCGGTGCCGGAGC+AGG | - | chr8.3:64093546-64093565 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 64093510 | 64097629 | 64093510 | ID=MS.gene071803 |
| chr8.3 | mRNA | 64093510 | 64097629 | 64093510 | ID=MS.gene071803.t1;Parent=MS.gene071803 |
| chr8.3 | exon | 64093510 | 64093699 | 64093510 | ID=MS.gene071803.t1.exon1;Parent=MS.gene071803.t1 |
| chr8.3 | CDS | 64093510 | 64093699 | 64093510 | ID=cds.MS.gene071803.t1;Parent=MS.gene071803.t1 |
| chr8.3 | exon | 64095624 | 64095665 | 64095624 | ID=MS.gene071803.t1.exon2;Parent=MS.gene071803.t1 |
| chr8.3 | CDS | 64095624 | 64095665 | 64095624 | ID=cds.MS.gene071803.t1;Parent=MS.gene071803.t1 |
| chr8.3 | exon | 64096195 | 64096282 | 64096195 | ID=MS.gene071803.t1.exon3;Parent=MS.gene071803.t1 |
| chr8.3 | CDS | 64096195 | 64096282 | 64096195 | ID=cds.MS.gene071803.t1;Parent=MS.gene071803.t1 |
| chr8.3 | exon | 64096586 | 64096667 | 64096586 | ID=MS.gene071803.t1.exon4;Parent=MS.gene071803.t1 |
| chr8.3 | CDS | 64096586 | 64096667 | 64096586 | ID=cds.MS.gene071803.t1;Parent=MS.gene071803.t1 |
| chr8.3 | exon | 64097435 | 64097629 | 64097435 | ID=MS.gene071803.t1.exon5;Parent=MS.gene071803.t1 |
| chr8.3 | CDS | 64097435 | 64097629 | 64097435 | ID=cds.MS.gene071803.t1;Parent=MS.gene071803.t1 |
| Gene Sequence |
| Protein sequence |
